Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045528.t1 | RHN61826.1 | 95.3 | 192 | 8 | 1 | 1 | 191 | 1 | 192 | 2.00E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045528.t1 | Q9LNB9 | 66.3 | 92 | 31 | 0 | 4 | 95 | 14 | 105 | 7.2e-32 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045528.t1 | A0A396I891 | 95.3 | 192 | 8 | 1 | 1 | 191 | 1 | 192 | 1.4e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045528.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045528.t1 | MTR_4g088035 | 47.191 | 89 | 47 | 0 | 14 | 102 | 6 | 94 | 1.64e-26 | 102 |
| MS.gene045528.t1 | MTR_3g073690 | 45.161 | 93 | 51 | 0 | 15 | 107 | 10 | 102 | 1.66e-23 | 92.8 |
| MS.gene045528.t1 | MTR_2g093310 | 41.935 | 93 | 54 | 0 | 15 | 107 | 34 | 126 | 2.96e-23 | 92.0 |
| MS.gene045528.t1 | MTR_2g100020 | 41.176 | 102 | 60 | 0 | 10 | 111 | 15 | 116 | 3.47e-23 | 94.0 |
| MS.gene045528.t1 | MTR_3g031660 | 42.105 | 95 | 55 | 0 | 15 | 109 | 8 | 102 | 7.38e-23 | 90.5 |
| MS.gene045528.t1 | MTR_4g107450 | 41.837 | 98 | 57 | 0 | 10 | 107 | 6 | 103 | 2.17e-22 | 92.0 |
| MS.gene045528.t1 | MTR_8g017090 | 41.667 | 108 | 52 | 2 | 13 | 111 | 11 | 116 | 4.58e-22 | 91.3 |
| MS.gene045528.t1 | MTR_1g095850 | 34.884 | 129 | 77 | 1 | 15 | 136 | 73 | 201 | 4.72e-22 | 89.7 |
| MS.gene045528.t1 | MTR_4g105170 | 43.011 | 93 | 53 | 0 | 15 | 107 | 12 | 104 | 7.57e-22 | 88.2 |
| MS.gene045528.t1 | MTR_5g083230 | 40.000 | 100 | 56 | 1 | 10 | 109 | 2 | 97 | 8.77e-22 | 87.4 |
| MS.gene045528.t1 | MTR_7g033800 | 41.935 | 93 | 54 | 0 | 15 | 107 | 12 | 104 | 1.53e-21 | 87.0 |
| MS.gene045528.t1 | MTR_3g077240 | 38.835 | 103 | 63 | 0 | 5 | 107 | 1 | 103 | 1.70e-21 | 87.4 |
| MS.gene045528.t1 | MTR_6g011250 | 45.679 | 81 | 43 | 1 | 12 | 91 | 7 | 87 | 1.95e-21 | 87.0 |
| MS.gene045528.t1 | MTR_4g083680 | 41.379 | 87 | 51 | 0 | 10 | 96 | 11 | 97 | 2.27e-21 | 86.7 |
| MS.gene045528.t1 | MTR_3g071590 | 41.053 | 95 | 52 | 1 | 15 | 109 | 9 | 99 | 2.65e-21 | 86.3 |
| MS.gene045528.t1 | MTR_6g011200 | 39.806 | 103 | 58 | 2 | 12 | 110 | 7 | 109 | 5.78e-21 | 87.4 |
| MS.gene045528.t1 | MTR_2g068760 | 37.838 | 111 | 59 | 2 | 10 | 120 | 9 | 109 | 7.35e-21 | 85.1 |
| MS.gene045528.t1 | MTR_5g083960 | 35.185 | 108 | 68 | 1 | 15 | 120 | 40 | 147 | 8.70e-21 | 85.9 |
| MS.gene045528.t1 | MTR_6g005070 | 39.785 | 93 | 56 | 0 | 15 | 107 | 10 | 102 | 9.45e-21 | 84.3 |
| MS.gene045528.t1 | MTR_7g074990 | 41.176 | 102 | 59 | 1 | 15 | 115 | 21 | 122 | 1.34e-20 | 86.3 |
| MS.gene045528.t1 | MTR_6g005080 | 39.785 | 93 | 56 | 0 | 15 | 107 | 11 | 103 | 2.39e-20 | 83.2 |
| MS.gene045528.t1 | MTR_5g083010 | 47.436 | 78 | 41 | 0 | 14 | 91 | 11 | 88 | 2.65e-20 | 84.0 |
| MS.gene045528.t1 | MTR_6g011230 | 38.053 | 113 | 67 | 1 | 7 | 116 | 4 | 116 | 2.75e-20 | 84.7 |
| MS.gene045528.t1 | MTR_4g060950 | 39.362 | 94 | 56 | 1 | 15 | 107 | 25 | 118 | 3.84e-20 | 84.0 |
| MS.gene045528.t1 | MTR_5g017950 | 40.860 | 93 | 55 | 0 | 15 | 107 | 9 | 101 | 6.23e-20 | 85.9 |
| MS.gene045528.t1 | MTR_5g075020 | 45.455 | 77 | 42 | 0 | 15 | 91 | 44 | 120 | 7.84e-20 | 84.0 |
| MS.gene045528.t1 | MTR_5g075020 | 45.455 | 77 | 42 | 0 | 15 | 91 | 48 | 124 | 7.92e-20 | 84.0 |
| MS.gene045528.t1 | MTR_3g094690 | 37.113 | 97 | 61 | 0 | 15 | 111 | 48 | 144 | 9.66e-20 | 84.0 |
| MS.gene045528.t1 | MTR_8g079580 | 39.623 | 106 | 60 | 2 | 15 | 119 | 9 | 111 | 1.01e-19 | 83.6 |
| MS.gene045528.t1 | MTR_3g071420 | 44.872 | 78 | 43 | 0 | 14 | 91 | 14 | 91 | 1.20e-19 | 82.4 |
| MS.gene045528.t1 | MTR_5g080470 | 31.579 | 133 | 89 | 2 | 10 | 140 | 3 | 135 | 3.44e-19 | 81.3 |
| MS.gene045528.t1 | MTR_4g099230 | 36.585 | 123 | 72 | 2 | 15 | 131 | 3 | 125 | 3.48e-19 | 80.5 |
| MS.gene045528.t1 | MTR_8g040900 | 45.455 | 77 | 42 | 0 | 15 | 91 | 8 | 84 | 4.36e-19 | 82.0 |
| MS.gene045528.t1 | MTR_6g027700 | 35.644 | 101 | 64 | 1 | 15 | 114 | 8 | 108 | 9.38e-19 | 80.5 |
| MS.gene045528.t1 | MTR_8g079620 | 37.000 | 100 | 63 | 0 | 13 | 112 | 7 | 106 | 1.23e-18 | 80.9 |
| MS.gene045528.t1 | MTR_3g452660 | 38.144 | 97 | 60 | 0 | 15 | 111 | 8 | 104 | 1.57e-18 | 81.6 |
| MS.gene045528.t1 | MTR_3g094690 | 38.144 | 97 | 59 | 1 | 15 | 111 | 48 | 143 | 1.75e-18 | 80.5 |
| MS.gene045528.t1 | MTR_8g036085 | 39.000 | 100 | 60 | 1 | 15 | 113 | 24 | 123 | 6.03e-18 | 79.0 |
| MS.gene045528.t1 | MTR_5g093010 | 35.484 | 93 | 60 | 0 | 15 | 107 | 6 | 98 | 7.16e-18 | 76.6 |
| MS.gene045528.t1 | MTR_8g079660 | 35.714 | 98 | 63 | 0 | 15 | 112 | 9 | 106 | 8.01e-18 | 79.3 |
| MS.gene045528.t1 | MTR_7g028905 | 32.673 | 101 | 68 | 0 | 11 | 111 | 2 | 102 | 1.23e-17 | 75.5 |
| MS.gene045528.t1 | MTR_5g085390 | 36.937 | 111 | 66 | 2 | 13 | 119 | 8 | 118 | 1.99e-17 | 77.8 |
| MS.gene045528.t1 | MTR_8g036105 | 48.000 | 75 | 38 | 1 | 15 | 88 | 19 | 93 | 5.36e-17 | 76.3 |
| MS.gene045528.t1 | MTR_6g027710 | 36.190 | 105 | 63 | 2 | 15 | 118 | 41 | 142 | 8.10e-17 | 75.9 |
| MS.gene045528.t1 | MTR_7g096530 | 34.677 | 124 | 70 | 3 | 1 | 123 | 1 | 114 | 8.23e-17 | 75.9 |
| MS.gene045528.t1 | MTR_1g070220 | 29.936 | 157 | 92 | 5 | 15 | 169 | 16 | 156 | 1.64e-15 | 72.0 |
| MS.gene045528.t1 | MTR_7g096610 | 33.333 | 108 | 71 | 1 | 10 | 116 | 4 | 111 | 2.82e-15 | 71.6 |
| MS.gene045528.t1 | MTR_7g075230 | 48.052 | 77 | 37 | 2 | 15 | 88 | 13 | 89 | 6.24e-15 | 70.1 |
| MS.gene045528.t1 | MTR_1g070205 | 41.333 | 75 | 43 | 1 | 15 | 88 | 13 | 87 | 1.12e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045528.t1 | AT1G06280 | 59.406 | 101 | 34 | 1 | 12 | 112 | 22 | 115 | 1.71e-40 | 137 |
| MS.gene045528.t1 | AT3G13850 | 43.363 | 113 | 53 | 2 | 13 | 116 | 35 | 145 | 3.53e-28 | 106 |
| MS.gene045528.t1 | AT3G50510 | 37.383 | 107 | 67 | 0 | 15 | 121 | 13 | 119 | 5.94e-25 | 96.7 |
| MS.gene045528.t1 | AT3G50510 | 37.383 | 107 | 67 | 0 | 15 | 121 | 13 | 119 | 5.94e-25 | 96.7 |
| MS.gene045528.t1 | AT1G72980 | 44.231 | 104 | 58 | 0 | 8 | 111 | 7 | 110 | 2.63e-24 | 95.5 |
| MS.gene045528.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.79e-22 | 90.1 |
| MS.gene045528.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.79e-22 | 90.1 |
| MS.gene045528.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.79e-22 | 90.1 |
| MS.gene045528.t1 | AT5G63090 | 41.176 | 102 | 60 | 0 | 6 | 107 | 3 | 104 | 1.79e-22 | 90.1 |
| MS.gene045528.t1 | AT1G07900 | 48.052 | 77 | 40 | 0 | 15 | 91 | 34 | 110 | 2.73e-22 | 89.7 |
| MS.gene045528.t1 | AT5G66870 | 33.571 | 140 | 78 | 2 | 15 | 140 | 8 | 146 | 4.30e-22 | 91.7 |
| MS.gene045528.t1 | AT2G28500 | 39.423 | 104 | 60 | 1 | 15 | 118 | 56 | 156 | 4.82e-22 | 89.7 |
| MS.gene045528.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 2.83e-21 | 89.4 |
| MS.gene045528.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 2.83e-21 | 89.4 |
| MS.gene045528.t1 | AT2G23660 | 41.935 | 93 | 54 | 0 | 15 | 107 | 6 | 98 | 2.83e-21 | 89.4 |
| MS.gene045528.t1 | AT3G27650 | 35.849 | 106 | 68 | 0 | 3 | 108 | 28 | 133 | 9.13e-21 | 84.7 |
| MS.gene045528.t1 | AT2G30130 | 38.947 | 95 | 58 | 0 | 15 | 109 | 9 | 103 | 1.05e-20 | 85.5 |
| MS.gene045528.t1 | AT1G16530 | 31.967 | 122 | 79 | 2 | 15 | 135 | 15 | 133 | 1.56e-20 | 84.3 |
| MS.gene045528.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 2.14e-20 | 84.7 |
| MS.gene045528.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 2.14e-20 | 84.7 |
| MS.gene045528.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 2.14e-20 | 84.7 |
| MS.gene045528.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 2.14e-20 | 84.7 |
| MS.gene045528.t1 | AT1G65620 | 48.052 | 77 | 40 | 0 | 15 | 91 | 10 | 86 | 2.14e-20 | 84.7 |
| MS.gene045528.t1 | AT2G30340 | 40.206 | 97 | 58 | 0 | 15 | 111 | 54 | 150 | 7.22e-20 | 84.7 |
| MS.gene045528.t1 | AT2G30340 | 40.206 | 97 | 58 | 0 | 15 | 111 | 53 | 149 | 9.20e-20 | 84.7 |
| MS.gene045528.t1 | AT3G47870 | 35.780 | 109 | 63 | 2 | 10 | 111 | 32 | 140 | 1.01e-19 | 85.5 |
| MS.gene045528.t1 | AT4G00210 | 35.897 | 117 | 74 | 1 | 7 | 122 | 4 | 120 | 1.05e-19 | 83.6 |
| MS.gene045528.t1 | AT1G31320 | 37.363 | 91 | 57 | 0 | 6 | 96 | 5 | 95 | 1.55e-19 | 82.0 |
| MS.gene045528.t1 | AT3G11090 | 38.776 | 98 | 60 | 0 | 14 | 111 | 11 | 108 | 1.79e-19 | 81.6 |
| MS.gene045528.t1 | AT3G26660 | 33.333 | 93 | 62 | 0 | 15 | 107 | 6 | 98 | 1.83e-18 | 77.8 |
| MS.gene045528.t1 | AT3G26620 | 33.333 | 93 | 62 | 0 | 15 | 107 | 6 | 98 | 1.97e-18 | 77.8 |
| MS.gene045528.t1 | AT2G40470 | 36.735 | 98 | 62 | 0 | 15 | 112 | 21 | 118 | 2.53e-18 | 79.3 |
| MS.gene045528.t1 | AT2G40470 | 36.735 | 98 | 62 | 0 | 15 | 112 | 46 | 143 | 8.61e-18 | 78.6 |
| MS.gene045528.t1 | AT2G42430 | 43.750 | 80 | 44 | 1 | 10 | 88 | 11 | 90 | 1.64e-17 | 78.2 |
| MS.gene045528.t1 | AT4G00220 | 39.216 | 102 | 61 | 1 | 17 | 117 | 20 | 121 | 3.47e-17 | 77.0 |
| MS.gene045528.t1 | AT5G35900 | 33.333 | 108 | 67 | 2 | 14 | 120 | 5 | 108 | 3.58e-17 | 76.6 |
| MS.gene045528.t1 | AT5G06080 | 34.694 | 98 | 63 | 1 | 14 | 110 | 7 | 104 | 7.91e-17 | 74.7 |
| MS.gene045528.t1 | AT2G31310 | 38.542 | 96 | 55 | 2 | 9 | 103 | 2 | 94 | 1.07e-16 | 74.7 |
| MS.gene045528.t1 | AT2G45410 | 32.773 | 119 | 79 | 1 | 17 | 134 | 19 | 137 | 1.73e-16 | 74.3 |
| MS.gene045528.t1 | AT3G58190 | 30.216 | 139 | 79 | 3 | 15 | 142 | 12 | 143 | 5.11e-16 | 73.6 |
| MS.gene045528.t1 | AT2G19820 | 35.106 | 94 | 60 | 1 | 4 | 96 | 2 | 95 | 5.58e-16 | 71.2 |
| MS.gene045528.t1 | AT2G42440 | 38.272 | 81 | 49 | 1 | 9 | 88 | 2 | 82 | 1.74e-15 | 72.8 |
| MS.gene045528.t1 | AT3G03760 | 35.238 | 105 | 64 | 2 | 15 | 118 | 52 | 153 | 1.21e-14 | 70.9 |
| MS.gene045528.t1 | AT2G45420 | 37.255 | 102 | 63 | 1 | 17 | 117 | 40 | 141 | 1.23e-14 | 70.5 |
| MS.gene045528.t1 | AT5G15060 | 29.661 | 118 | 71 | 4 | 7 | 122 | 10 | 117 | 4.57e-12 | 61.2 |
Find 34 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGACTGCTGCTGAATATT+TGG | 0.145265 | 4.3:-29690151 | None:intergenic |
| TGAACAATATGTATTATAAA+TGG | 0.237268 | 4.3:-29690083 | None:intergenic |
| AGAAATATTAGTAATAATAA+TGG | 0.289856 | 4.3:+29689626 | MS.gene045528:CDS |
| TCTCCATAAGAACCATTTAT+AGG | 0.292857 | 4.3:-29689872 | None:intergenic |
| AATTCTCTACTTCTGCTTGA+TGG | 0.303337 | 4.3:-29689725 | None:intergenic |
| GCACTTGCACCAATTGGTTT+TGG | 0.305386 | 4.3:-29689958 | None:intergenic |
| AAGTTGTGGATTCATTGATA+TGG | 0.307263 | 4.3:+29689825 | MS.gene045528:CDS |
| AGGCAAAGGGATCCTATAAA+TGG | 0.334383 | 4.3:+29689860 | MS.gene045528:CDS |
| GATCCTATAAATGGTTCTTA+TGG | 0.354301 | 4.3:+29689869 | MS.gene045528:CDS |
| TACAAGATCTTGATAGTTTG+AGG | 0.357044 | 4.3:+29690113 | MS.gene045528:CDS |
| GCAACATAACAAAGTTTGTA+AGG | 0.400470 | 4.3:+29689777 | MS.gene045528:CDS |
| GTGACTGCTGCTGAATATTT+GGG | 0.405388 | 4.3:-29690150 | None:intergenic |
| AGTTGTGGATTCATTGATAT+GGG | 0.416674 | 4.3:+29689826 | MS.gene045528:CDS |
| GAAATATTAGTAATAATAAT+GGG | 0.417105 | 4.3:+29689627 | MS.gene045528:CDS |
| AAAGCAGTGCACAAAGTGTT+TGG | 0.418599 | 4.3:+29689749 | MS.gene045528:CDS |
| GAGGTGGCACTTGCACCAAT+TGG | 0.438774 | 4.3:-29689964 | None:intergenic |
| GATTATCATCATCTTCATCA+TGG | 0.452314 | 4.3:+29690028 | MS.gene045528:CDS |
| TCACAGTCATACTATATTGC+AGG | 0.457053 | 4.3:+29690169 | MS.gene045528:CDS |
| TAGAGATCACCAAAACCAAT+TGG | 0.474361 | 4.3:+29689949 | MS.gene045528:CDS |
| CTTCTGCTTGATGGAAAGTA+AGG | 0.478129 | 4.3:-29689716 | None:intergenic |
| TAATCAACTGCATTATGATC+AGG | 0.493064 | 4.3:-29690010 | None:intergenic |
| ATTATCATCATCTTCATCAT+GGG | 0.522912 | 4.3:+29690029 | MS.gene045528:CDS |
| GCTCTAACTTTCCCTTGAGG+TGG | 0.530192 | 4.3:-29689980 | None:intergenic |
| CATCATGGGAATCATAAGAA+TGG | 0.531608 | 4.3:+29690043 | MS.gene045528:CDS |
| GGGAGATAGAAGAAAAGTTG+TGG | 0.539608 | 4.3:+29689811 | MS.gene045528:CDS |
| TGATATGGGAAGCACTCTCT+AGG | 0.540083 | 4.3:+29689840 | MS.gene045528:CDS |
| GCGCAGCATGCAAGCATCAA+AGG | 0.554577 | 4.3:+29689663 | MS.gene045528:CDS |
| GGAAGCACTCTCTAGGCAAA+GGG | 0.561200 | 4.3:+29689847 | MS.gene045528:CDS |
| GGGAAGCACTCTCTAGGCAA+AGG | 0.562224 | 4.3:+29689846 | MS.gene045528:CDS |
| TTGGTGCAAGTGCCACCTCA+AGG | 0.577515 | 4.3:+29689968 | MS.gene045528:CDS |
| TGGTGCAAGTGCCACCTCAA+GGG | 0.587697 | 4.3:+29689969 | MS.gene045528:CDS |
| GTTTGTAAGGAATGCTCAAG+AGG | 0.591028 | 4.3:+29689790 | MS.gene045528:CDS |
| TCTGCTCTAACTTTCCCTTG+AGG | 0.597530 | 4.3:-29689983 | None:intergenic |
| TTTGTAAGGAATGCTCAAGA+GGG | 0.633179 | 4.3:+29689791 | MS.gene045528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATATTAGTAATAATAA+TGG | + | chr4.3:29689626-29689645 | MS.gene045528:CDS | 10.0% |
| !! | GAAATATTAGTAATAATAAT+GGG | + | chr4.3:29689627-29689646 | MS.gene045528:CDS | 10.0% |
| !! | CACTAAATTAGTAATTAATT+TGG | + | chr4.3:29690487-29690506 | MS.gene045528:intron | 15.0% |
| !! | TGAACAATATGTATTATAAA+TGG | - | chr4.3:29690086-29690105 | None:intergenic | 15.0% |
| !! | TTTAACAAAAAACATGAGAT+TGG | - | chr4.3:29690200-29690219 | None:intergenic | 20.0% |
| !!! | TTTTCCTGTTTCAATATTTT+AGG | + | chr4.3:29690553-29690572 | MS.gene045528:intron | 20.0% |
| ! | AATTTGGTCAAACTATACTA+AGG | + | chr4.3:29690503-29690522 | MS.gene045528:intron | 25.0% |
| ! | AGTTGTGACATTATCAAATA+TGG | + | chr4.3:29690347-29690366 | MS.gene045528:intron | 25.0% |
| ! | ATTATCATCATCTTCATCAT+GGG | + | chr4.3:29690029-29690048 | MS.gene045528:CDS | 25.0% |
| AACAAAAAACATGAGATTGG+TGG | - | chr4.3:29690197-29690216 | None:intergenic | 30.0% | |
| AAGTTGTGGATTCATTGATA+TGG | + | chr4.3:29689825-29689844 | MS.gene045528:CDS | 30.0% | |
| AGTTGTGGATTCATTGATAT+GGG | + | chr4.3:29689826-29689845 | MS.gene045528:CDS | 30.0% | |
| GATCCTATAAATGGTTCTTA+TGG | + | chr4.3:29689869-29689888 | MS.gene045528:CDS | 30.0% | |
| GATTATCATCATCTTCATCA+TGG | + | chr4.3:29690028-29690047 | MS.gene045528:CDS | 30.0% | |
| GCAACATAACAAAGTTTGTA+AGG | + | chr4.3:29689777-29689796 | MS.gene045528:CDS | 30.0% | |
| GTCACCTAAAATATTGAAAC+AGG | - | chr4.3:29690560-29690579 | None:intergenic | 30.0% | |
| TAATCAACTGCATTATGATC+AGG | - | chr4.3:29690013-29690032 | None:intergenic | 30.0% | |
| TCTCCATAAGAACCATTTAT+AGG | - | chr4.3:29689875-29689894 | None:intergenic | 30.0% | |
| ! | TACAAGATCTTGATAGTTTG+AGG | + | chr4.3:29690113-29690132 | MS.gene045528:CDS | 30.0% |
| !! | ACTACAAAAGAGCACTATAT+GGG | - | chr4.3:29690415-29690434 | None:intergenic | 30.0% |
| AATTCTCTACTTCTGCTTGA+TGG | - | chr4.3:29689728-29689747 | None:intergenic | 35.0% | |
| CATCATGGGAATCATAAGAA+TGG | + | chr4.3:29690043-29690062 | MS.gene045528:CDS | 35.0% | |
| TAGAGATCACCAAAACCAAT+TGG | + | chr4.3:29689949-29689968 | MS.gene045528:CDS | 35.0% | |
| TCACAGTCATACTATATTGC+AGG | + | chr4.3:29690169-29690188 | MS.gene045528:CDS | 35.0% | |
| TTTGTAAGGAATGCTCAAGA+GGG | + | chr4.3:29689791-29689810 | MS.gene045528:CDS | 35.0% | |
| ! | CATATAGTGCTCTTTTGTAG+TGG | + | chr4.3:29690414-29690433 | MS.gene045528:intron | 35.0% |
| !! | CACTACAAAAGAGCACTATA+TGG | - | chr4.3:29690416-29690435 | None:intergenic | 35.0% |
| AGGCAAAGGGATCCTATAAA+TGG | + | chr4.3:29689860-29689879 | MS.gene045528:CDS | 40.0% | |
| CTTCTGCTTGATGGAAAGTA+AGG | - | chr4.3:29689719-29689738 | None:intergenic | 40.0% | |
| GAGCATACTTGTGACTAGTA+AGG | - | chr4.3:29690393-29690412 | None:intergenic | 40.0% | |
| GGGAGATAGAAGAAAAGTTG+TGG | + | chr4.3:29689811-29689830 | MS.gene045528:CDS | 40.0% | |
| GTGACTGCTGCTGAATATTT+GGG | - | chr4.3:29690153-29690172 | None:intergenic | 40.0% | |
| GTTTGTAAGGAATGCTCAAG+AGG | + | chr4.3:29689790-29689809 | MS.gene045528:CDS | 40.0% | |
| TGTGACTGCTGCTGAATATT+TGG | - | chr4.3:29690154-29690173 | None:intergenic | 40.0% | |
| ! | AAAGCAGTGCACAAAGTGTT+TGG | + | chr4.3:29689749-29689768 | MS.gene045528:CDS | 40.0% |
| TCTGCTCTAACTTTCCCTTG+AGG | - | chr4.3:29689986-29690005 | None:intergenic | 45.0% | |
| !! | GCACTTGCACCAATTGGTTT+TGG | - | chr4.3:29689961-29689980 | None:intergenic | 45.0% |
| !! | TGATATGGGAAGCACTCTCT+AGG | + | chr4.3:29689840-29689859 | MS.gene045528:CDS | 45.0% |
| GCTCTAACTTTCCCTTGAGG+TGG | - | chr4.3:29689983-29690002 | None:intergenic | 50.0% | |
| !! | GGAAGCACTCTCTAGGCAAA+GGG | + | chr4.3:29689847-29689866 | MS.gene045528:CDS | 50.0% |
| GAGGTGGCACTTGCACCAAT+TGG | - | chr4.3:29689967-29689986 | None:intergenic | 55.0% | |
| GCGCAGCATGCAAGCATCAA+AGG | + | chr4.3:29689663-29689682 | MS.gene045528:CDS | 55.0% | |
| TGGTGCAAGTGCCACCTCAA+GGG | + | chr4.3:29689969-29689988 | MS.gene045528:CDS | 55.0% | |
| TTGGTGCAAGTGCCACCTCA+AGG | + | chr4.3:29689968-29689987 | MS.gene045528:CDS | 55.0% | |
| !! | GGGAAGCACTCTCTAGGCAA+AGG | + | chr4.3:29689846-29689865 | MS.gene045528:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 29689620 | 29690594 | 29689620 | ID=MS.gene045528 |
| chr4.3 | mRNA | 29689620 | 29690594 | 29689620 | ID=MS.gene045528.t1;Parent=MS.gene045528 |
| chr4.3 | exon | 29689620 | 29690190 | 29689620 | ID=MS.gene045528.t1.exon1;Parent=MS.gene045528.t1 |
| chr4.3 | CDS | 29689620 | 29690190 | 29689620 | ID=cds.MS.gene045528.t1;Parent=MS.gene045528.t1 |
| chr4.3 | exon | 29690575 | 29690594 | 29690575 | ID=MS.gene045528.t1.exon2;Parent=MS.gene045528.t1 |
| chr4.3 | CDS | 29690575 | 29690594 | 29690575 | ID=cds.MS.gene045528.t1;Parent=MS.gene045528.t1 |
| Gene Sequence |
| Protein sequence |
