Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04558.t1 | XP_013460192.1 | 94.6 | 389 | 20 | 1 | 1 | 388 | 1 | 389 | 2.20E-201 | 711.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04558.t1 | G7ZYI5 | 94.6 | 389 | 20 | 1 | 1 | 388 | 1 | 389 | 1.6e-201 | 711.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04558.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04558.t1 | MTR_3g463270 | 97.943 | 389 | 7 | 1 | 1 | 388 | 1 | 389 | 0.0 | 788 |
| MS.gene04558.t1 | MTR_3g072920 | 49.798 | 247 | 109 | 11 | 146 | 386 | 212 | 449 | 3.37e-63 | 209 |
| MS.gene04558.t1 | MTR_1g024980 | 45.200 | 250 | 111 | 9 | 147 | 388 | 170 | 401 | 7.46e-59 | 196 |
| MS.gene04558.t1 | MTR_4g081420 | 45.417 | 240 | 114 | 9 | 153 | 385 | 205 | 434 | 6.54e-57 | 192 |
| MS.gene04558.t1 | MTR_2g010860 | 36.226 | 265 | 150 | 6 | 132 | 386 | 120 | 375 | 7.24e-45 | 159 |
| MS.gene04558.t1 | MTR_2g010870 | 36.131 | 274 | 145 | 8 | 133 | 386 | 91 | 354 | 7.67e-43 | 153 |
| MS.gene04558.t1 | MTR_5g012220 | 38.009 | 221 | 95 | 7 | 175 | 388 | 105 | 290 | 6.77e-32 | 122 |
| MS.gene04558.t1 | MTR_4g101450 | 37.559 | 213 | 96 | 7 | 178 | 388 | 98 | 275 | 2.36e-30 | 117 |
| MS.gene04558.t1 | MTR_5g094440 | 31.224 | 237 | 128 | 10 | 159 | 387 | 61 | 270 | 1.33e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04558.t1 | AT2G29660 | 55.319 | 329 | 122 | 8 | 73 | 388 | 57 | 373 | 5.66e-111 | 330 |
| MS.gene04558.t1 | AT4G27240 | 42.294 | 279 | 135 | 9 | 115 | 385 | 168 | 428 | 2.87e-58 | 196 |
| MS.gene04558.t1 | AT5G54630 | 42.537 | 268 | 121 | 10 | 133 | 385 | 220 | 469 | 4.23e-58 | 196 |
| MS.gene04558.t1 | AT1G75710 | 42.754 | 276 | 114 | 10 | 144 | 388 | 197 | 459 | 8.14e-57 | 193 |
| MS.gene04558.t1 | AT4G27240 | 41.667 | 252 | 123 | 8 | 115 | 357 | 168 | 404 | 4.16e-49 | 172 |
| MS.gene04558.t1 | AT1G11490 | 36.032 | 247 | 139 | 9 | 150 | 386 | 126 | 363 | 2.25e-36 | 136 |
| MS.gene04558.t1 | AT1G11490 | 36.032 | 247 | 139 | 9 | 150 | 386 | 126 | 363 | 2.25e-36 | 136 |
| MS.gene04558.t1 | AT4G22560 | 34.440 | 241 | 109 | 10 | 153 | 388 | 68 | 264 | 1.80e-28 | 112 |
| MS.gene04558.t1 | AT1G62520 | 33.178 | 214 | 109 | 6 | 176 | 388 | 100 | 280 | 7.17e-24 | 100 |
| MS.gene04558.t1 | AT4G12450 | 30.000 | 280 | 129 | 9 | 118 | 388 | 56 | 277 | 1.43e-22 | 96.7 |
Find 107 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGAGGAGGTTCGGTTTC+TGG | 0.118508 | 3.1:-47224165 | None:intergenic |
| ATAAAACTCTTTCTTCTTCT+TGG | 0.198943 | 3.1:+47223882 | MS.gene04558:CDS |
| TTTGGGAAGGTGTTTGTTTC+GGG | 0.206736 | 3.1:-47224277 | None:intergenic |
| TCTGGCTGTTATGGATCTTC+AGG | 0.257483 | 3.1:-47224312 | None:intergenic |
| GTTTGGGAAGGTGTTTGTTT+CGG | 0.289642 | 3.1:-47224278 | None:intergenic |
| GGTGAAGAGGGTTGTGATAA+AGG | 0.305338 | 3.1:-47223836 | None:intergenic |
| ATTTGTGAAATTATTAAATC+AGG | 0.308391 | 3.1:+47224523 | MS.gene04558:CDS |
| TTCAGGATTCGGTGTATGTT+TGG | 0.313472 | 3.1:-47224295 | None:intergenic |
| CTCGTTTGTCGTGTTATTGC+GGG | 0.338857 | 3.1:+47224661 | MS.gene04558:CDS |
| TGATGATTGGGTGGTGGGAG+TGG | 0.349559 | 3.1:-47223954 | None:intergenic |
| CACGCTGTATCGGAGCTTAT+CGG | 0.371706 | 3.1:+47224205 | MS.gene04558:CDS |
| GTGGAAATTCCATCTAATTT+CGG | 0.372427 | 3.1:-47224553 | None:intergenic |
| GTGTTATTGCGGGTCGGGTT+GGG | 0.374604 | 3.1:+47224671 | MS.gene04558:CDS |
| TGAGGTGATGATTGGGTGGT+GGG | 0.378568 | 3.1:-47223959 | None:intergenic |
| CACACAATCACTTATCTCAT+TGG | 0.390501 | 3.1:+47224012 | MS.gene04558:CDS |
| TCAGGATTCGGTGTATGTTT+GGG | 0.398697 | 3.1:-47224294 | None:intergenic |
| AGTGCAAATCATCTTCAAAT+CGG | 0.403452 | 3.1:+47224249 | MS.gene04558:CDS |
| GGGTCGGGTTGGGTCAGATT+TGG | 0.405968 | 3.1:+47224681 | MS.gene04558:CDS |
| CGTGGTGGATCTTGAAAACT+CGG | 0.422260 | 3.1:-47224046 | None:intergenic |
| TGTTATGGATCTTCAGGATT+CGG | 0.422603 | 3.1:-47224306 | None:intergenic |
| ATCTCGCCACACGCGGTACA+TGG | 0.424031 | 3.1:-47224139 | None:intergenic |
| TCCGGCGGTCGCGGCGGCGA+CGG | 0.425018 | 3.1:-47223765 | None:intergenic |
| TGATGATTCTCGAGGAGGTT+CGG | 0.429355 | 3.1:-47224172 | None:intergenic |
| AACTCCCGCTCGATGTCATC+AGG | 0.433180 | 3.1:-47224610 | None:intergenic |
| CTGAGGTGATGATTGGGTGG+TGG | 0.435680 | 3.1:-47223960 | None:intergenic |
| CTCCGATACAGCGTGGTTTG+CGG | 0.437651 | 3.1:-47224197 | None:intergenic |
| TTGTCGTGTTATTGCGGGTC+GGG | 0.439477 | 3.1:+47224666 | MS.gene04558:CDS |
| TTTGGATGAGAAGGTGAAGA+GGG | 0.441888 | 3.1:-47223848 | None:intergenic |
| CGTGTTATTGCGGGTCGGGT+TGG | 0.446697 | 3.1:+47224670 | MS.gene04558:CDS |
| TATGTGAGTTGGGACACAAC+GGG | 0.453359 | 3.1:+47224467 | MS.gene04558:CDS |
| TGGTGGACTGAGGTGATGAT+TGG | 0.454282 | 3.1:-47223967 | None:intergenic |
| TTTCCACGCTGTCGACTAGC+TGG | 0.463808 | 3.1:+47224569 | MS.gene04558:CDS |
| GCTCGTTTGTCGTGTTATTG+CGG | 0.468948 | 3.1:+47224660 | MS.gene04558:CDS |
| TTAAGTTCATGAATGTCAAA+CGG | 0.473933 | 3.1:+47224632 | MS.gene04558:CDS |
| AGGGAAGAAGAGGTTGTTAT+CGG | 0.474066 | 3.1:-47224098 | None:intergenic |
| TGATTGGGTGGTGGGAGTGG+TGG | 0.477345 | 3.1:-47223951 | None:intergenic |
| ACCGTCGCCGCCGCGACCGC+CGG | 0.483078 | 3.1:+47223764 | MS.gene04558:CDS |
| TAAGTTCATGAATGTCAAAC+GGG | 0.487621 | 3.1:+47224633 | MS.gene04558:CDS |
| GGTGGACTGAGGTGATGATT+GGG | 0.493956 | 3.1:-47223966 | None:intergenic |
| TCTTTGATGGTAATAATTGA+CGG | 0.507796 | 3.1:-47223799 | None:intergenic |
| GTGCAAATCATCTTCAAATC+GGG | 0.509342 | 3.1:+47224250 | MS.gene04558:CDS |
| ATCGGCGGAGATATCTGATT+CGG | 0.513214 | 3.1:-47224080 | None:intergenic |
| GGATCTTGAAAACTCGGGTC+GGG | 0.515307 | 3.1:-47224040 | None:intergenic |
| AAGACTTGATGAGGAGGAGT+TGG | 0.519786 | 3.1:+47224774 | MS.gene04558:CDS |
| GCTCTCGCCGCGCGCCATCA+CGG | 0.521082 | 3.1:-47224740 | None:intergenic |
| TTGATCCTCATTGTCCACCT+TGG | 0.524541 | 3.1:+47223728 | MS.gene04558:CDS |
| CACTATGTTATGACCCGGGT+CGG | 0.525279 | 3.1:-47224230 | None:intergenic |
| ATCCGCAAACCACGCTGTAT+CGG | 0.525656 | 3.1:+47224195 | MS.gene04558:CDS |
| GATTCGGATTGTTTCTTCCG+TGG | 0.532122 | 3.1:-47224064 | None:intergenic |
| TGATTTCACGGTGGTTGTAA+TGG | 0.533659 | 3.1:-47223987 | None:intergenic |
| CGGATTGATGATTCTCGAGG+AGG | 0.544832 | 3.1:-47224177 | None:intergenic |
| TGATTGTGTGGATGATTTCA+CGG | 0.545394 | 3.1:-47223999 | None:intergenic |
| TTTGTCGTGTTATTGCGGGT+CGG | 0.546791 | 3.1:+47224665 | MS.gene04558:CDS |
| TGGATCTTGAAAACTCGGGT+CGG | 0.548817 | 3.1:-47224041 | None:intergenic |
| GAAAGATATCATTGCGGAGA+GGG | 0.550984 | 3.1:-47224117 | None:intergenic |
| TCGGATTGTTTCTTCCGTGG+TGG | 0.552111 | 3.1:-47224061 | None:intergenic |
| GGAGCTTATCGGATCCGACC+CGG | 0.553645 | 3.1:+47224216 | MS.gene04558:CDS |
| CGGTGAACATGAAGCATCCA+AGG | 0.563804 | 3.1:-47223745 | None:intergenic |
| GTGATGGCGCGCGGCGAGAG+CGG | 0.566946 | 3.1:+47224742 | MS.gene04558:CDS |
| GACGAACGCTGTATCGCCGA+CGG | 0.570666 | 3.1:+47224409 | MS.gene04558:CDS |
| GTCAGATTTGGACGATGAGG+TGG | 0.571954 | 3.1:+47224693 | MS.gene04558:CDS |
| GCGGCGCGTGACACCACGCG+CGG | 0.573694 | 3.1:-47224383 | None:intergenic |
| GGACTGAGGTGATGATTGGG+TGG | 0.579372 | 3.1:-47223963 | None:intergenic |
| ATTTGCACTATGTTATGACC+CGG | 0.580907 | 3.1:-47224235 | None:intergenic |
| TTTGATTCCGTGATGGCGCG+CGG | 0.584494 | 3.1:+47224733 | MS.gene04558:CDS |
| ATCTTTCCATGTACCGCGTG+TGG | 0.586799 | 3.1:+47224133 | MS.gene04558:CDS |
| GATTCGGTGTATGTTTGGGA+AGG | 0.587325 | 3.1:-47224290 | None:intergenic |
| AAGCAAGGAAGAACAGCCCT+AGG | 0.591167 | 3.1:-47224808 | None:intergenic |
| CGGCGATACAGCGTTCGTCA+TGG | 0.591215 | 3.1:-47224405 | None:intergenic |
| CTGGAAAATCTCGCCACACG+CGG | 0.595711 | 3.1:-47224146 | None:intergenic |
| GGAAAGATATCATTGCGGAG+AGG | 0.602436 | 3.1:-47224118 | None:intergenic |
| CCACGCTGTCGACTAGCTGG+AGG | 0.602472 | 3.1:+47224572 | MS.gene04558:CDS |
| CACGCTGTCGACTAGCTGGA+GGG | 0.602474 | 3.1:+47224573 | MS.gene04558:CDS |
| GATGAGGTGGATAAAACCGA+TGG | 0.603948 | 3.1:+47224706 | MS.gene04558:CDS |
| AGCATCCAAGGTGGACAATG+AGG | 0.604755 | 3.1:-47223733 | None:intergenic |
| CATTGCGGAGAGGGAAGAAG+AGG | 0.607506 | 3.1:-47224108 | None:intergenic |
| TTGCGGATTGATGATTCTCG+AGG | 0.608605 | 3.1:-47224180 | None:intergenic |
| CTATACACAATCACAAAGCA+AGG | 0.609481 | 3.1:-47224823 | None:intergenic |
| ACGAACGCTGTATCGCCGAC+GGG | 0.610056 | 3.1:+47224410 | MS.gene04558:CDS |
| ATTCGAAGAATATCGCGAAA+CGG | 0.611767 | 3.1:+47224348 | MS.gene04558:CDS |
| ATGAGGTGGATAAAACCGAT+GGG | 0.612087 | 3.1:+47224707 | MS.gene04558:CDS |
| AATTCCTGATGACATCGAGC+GGG | 0.613181 | 3.1:+47224606 | MS.gene04558:CDS |
| GAGCTTATCGGATCCGACCC+GGG | 0.613363 | 3.1:+47224217 | MS.gene04558:CDS |
| GATATTCTTCGAATTTCGAG+AGG | 0.614943 | 3.1:-47224339 | None:intergenic |
| TGTTTACACAAGACTTGATG+AGG | 0.624213 | 3.1:+47224765 | MS.gene04558:CDS |
| CAATGAGATAAGTGATTGTG+TGG | 0.625536 | 3.1:-47224011 | None:intergenic |
| AAATCATCTTCAAATCGGGT+TGG | 0.627452 | 3.1:+47224254 | MS.gene04558:CDS |
| CAATTCCTGATGACATCGAG+CGG | 0.650943 | 3.1:+47224605 | MS.gene04558:CDS |
| ACGCATGAGTTCATTCCCGT+CGG | 0.655062 | 3.1:-47224425 | None:intergenic |
| TTTGCACTATGTTATGACCC+GGG | 0.656909 | 3.1:-47224234 | None:intergenic |
| TGGGTCAGATTTGGACGATG+AGG | 0.659548 | 3.1:+47224690 | MS.gene04558:CDS |
| GTGAAGATTAAAGCCGCGCG+TGG | 0.662281 | 3.1:+47224370 | MS.gene04558:CDS |
| TTTCACGGTGGTTGTAATGG+TGG | 0.665508 | 3.1:-47223984 | None:intergenic |
| TTATGTGAGTTGGGACACAA+CGG | 0.667875 | 3.1:+47224466 | MS.gene04558:CDS |
| ATGTGAGTTGGGACACAACG+GGG | 0.671355 | 3.1:+47224468 | MS.gene04558:CDS |
| TGAGGTGGATAAAACCGATG+GGG | 0.677373 | 3.1:+47224708 | MS.gene04558:CDS |
| GAAGAAGAGGTTGTTATCGG+CGG | 0.680562 | 3.1:-47224095 | None:intergenic |
| GAGGTGGATAAAACCGATGG+GGG | 0.685349 | 3.1:+47224709 | MS.gene04558:CDS |
| GTGGTGGATCTTGAAAACTC+GGG | 0.686707 | 3.1:-47224045 | None:intergenic |
| CGATACAGCGTTCGTCATGG+CGG | 0.694124 | 3.1:-47224402 | None:intergenic |
| TTACACAAGACTTGATGAGG+AGG | 0.695990 | 3.1:+47224768 | MS.gene04558:CDS |
| TGAACATGAAGCATCCAAGG+TGG | 0.710959 | 3.1:-47223742 | None:intergenic |
| CCTCCAGCTAGTCGACAGCG+TGG | 0.733625 | 3.1:-47224572 | None:intergenic |
| CGATAAGCTCCGATACAGCG+TGG | 0.733944 | 3.1:-47224204 | None:intergenic |
| GTGGTTGTAATGGTGGACTG+AGG | 0.746411 | 3.1:-47223977 | None:intergenic |
| TACATGGAAAGATATCATTG+CGG | 0.753530 | 3.1:-47224123 | None:intergenic |
| TTGTGTGGATGATTTCACGG+TGG | 0.773275 | 3.1:-47223996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGAAATTATTAAATC+AGG | + | chr3.1:47224523-47224542 | MS.gene04558:CDS | 15.0% |
| ! | ATAAAACTCTTTCTTCTTCT+TGG | + | chr3.1:47223882-47223901 | MS.gene04558:CDS | 25.0% |
| ! | TTAAGTTCATGAATGTCAAA+CGG | + | chr3.1:47224632-47224651 | MS.gene04558:CDS | 25.0% |
| !! | AAGAAGAAGAAAGAGTTTTA+TGG | - | chr3.1:47223883-47223902 | None:intergenic | 25.0% |
| !! | TCTTTGATGGTAATAATTGA+CGG | - | chr3.1:47223802-47223821 | None:intergenic | 25.0% |
| !!! | AGAAGAAGAAAGAGTTTTAT+GGG | - | chr3.1:47223882-47223901 | None:intergenic | 25.0% |
| !!! | GTTTTATGGGTTTTGAATTT+TGG | - | chr3.1:47223869-47223888 | None:intergenic | 25.0% |
| AGTGCAAATCATCTTCAAAT+CGG | + | chr3.1:47224249-47224268 | MS.gene04558:CDS | 30.0% | |
| GTGGAAATTCCATCTAATTT+CGG | - | chr3.1:47224556-47224575 | None:intergenic | 30.0% | |
| TAAGTTCATGAATGTCAAAC+GGG | + | chr3.1:47224633-47224652 | MS.gene04558:CDS | 30.0% | |
| TACATGGAAAGATATCATTG+CGG | - | chr3.1:47224126-47224145 | None:intergenic | 30.0% | |
| ! | GAGATTTTTCGTTTCTTTGA+TGG | - | chr3.1:47223815-47223834 | None:intergenic | 30.0% |
| !! | GTTTTGAATTTTGGATGAGA+AGG | - | chr3.1:47223860-47223879 | None:intergenic | 30.0% |
| !!! | AGTTGGTTGTTTTTAATCCT+AGG | + | chr3.1:47224791-47224810 | MS.gene04558:CDS | 30.0% |
| !!! | GTTGGTTGTTTTTAATCCTA+GGG | + | chr3.1:47224792-47224811 | MS.gene04558:CDS | 30.0% |
| !!! | TCCACTTTTTTATGTGAGTT+GGG | + | chr3.1:47224457-47224476 | MS.gene04558:CDS | 30.0% |
| AAATCATCTTCAAATCGGGT+TGG | + | chr3.1:47224254-47224273 | MS.gene04558:CDS | 35.0% | |
| ATTCGAAGAATATCGCGAAA+CGG | + | chr3.1:47224348-47224367 | MS.gene04558:CDS | 35.0% | |
| ATTTGCACTATGTTATGACC+CGG | - | chr3.1:47224238-47224257 | None:intergenic | 35.0% | |
| CAATGAGATAAGTGATTGTG+TGG | - | chr3.1:47224014-47224033 | None:intergenic | 35.0% | |
| CACACAATCACTTATCTCAT+TGG | + | chr3.1:47224012-47224031 | MS.gene04558:CDS | 35.0% | |
| CTATACACAATCACAAAGCA+AGG | - | chr3.1:47224826-47224845 | None:intergenic | 35.0% | |
| GATATTCTTCGAATTTCGAG+AGG | - | chr3.1:47224342-47224361 | None:intergenic | 35.0% | |
| GTGCAAATCATCTTCAAATC+GGG | + | chr3.1:47224250-47224269 | MS.gene04558:CDS | 35.0% | |
| TCCCAACTCACATAAAAAAG+TGG | - | chr3.1:47224461-47224480 | None:intergenic | 35.0% | |
| TGATTGTGTGGATGATTTCA+CGG | - | chr3.1:47224002-47224021 | None:intergenic | 35.0% | |
| TGTTATGGATCTTCAGGATT+CGG | - | chr3.1:47224309-47224328 | None:intergenic | 35.0% | |
| TGTTTACACAAGACTTGATG+AGG | + | chr3.1:47224765-47224784 | MS.gene04558:CDS | 35.0% | |
| !!! | CTCCACTTTTTTATGTGAGT+TGG | + | chr3.1:47224456-47224475 | MS.gene04558:CDS | 35.0% |
| !!! | TTGACGGTTATCTTGTTTTC+CGG | - | chr3.1:47223786-47223805 | None:intergenic | 35.0% |
| AGGGAAGAAGAGGTTGTTAT+CGG | - | chr3.1:47224101-47224120 | None:intergenic | 40.0% | |
| ATGAGGTGGATAAAACCGAT+GGG | + | chr3.1:47224707-47224726 | MS.gene04558:CDS | 40.0% | |
| GAAAGATATCATTGCGGAGA+GGG | - | chr3.1:47224120-47224139 | None:intergenic | 40.0% | |
| TGATTTCACGGTGGTTGTAA+TGG | - | chr3.1:47223990-47224009 | None:intergenic | 40.0% | |
| TTACACAAGACTTGATGAGG+AGG | + | chr3.1:47224768-47224787 | MS.gene04558:CDS | 40.0% | |
| TTTGCACTATGTTATGACCC+GGG | - | chr3.1:47224237-47224256 | None:intergenic | 40.0% | |
| TTTGGATGAGAAGGTGAAGA+GGG | - | chr3.1:47223851-47223870 | None:intergenic | 40.0% | |
| ! | CGAATTTCGAGAGGATTTTC+TGG | - | chr3.1:47224333-47224352 | None:intergenic | 40.0% |
| ! | GGATTTTCGCCGAAATTAGA+TGG | + | chr3.1:47224544-47224563 | MS.gene04558:CDS | 40.0% |
| ! | TGCACGAATTTTTGCAGAAG+AGG | - | chr3.1:47223922-47223941 | None:intergenic | 40.0% |
| ! | TTATGTGAGTTGGGACACAA+CGG | + | chr3.1:47224466-47224485 | MS.gene04558:CDS | 40.0% |
| ! | TTTTGGATGAGAAGGTGAAG+AGG | - | chr3.1:47223852-47223871 | None:intergenic | 40.0% |
| !! | GTTTGGGAAGGTGTTTGTTT+CGG | - | chr3.1:47224281-47224300 | None:intergenic | 40.0% |
| !! | TCAGGATTCGGTGTATGTTT+GGG | - | chr3.1:47224297-47224316 | None:intergenic | 40.0% |
| !! | TTCAGGATTCGGTGTATGTT+TGG | - | chr3.1:47224298-47224317 | None:intergenic | 40.0% |
| !! | TTTGGGAAGGTGTTTGTTTC+GGG | - | chr3.1:47224280-47224299 | None:intergenic | 40.0% |
| !!! | AGAGGATTTTCTGGCTGTTA+TGG | - | chr3.1:47224324-47224343 | None:intergenic | 40.0% |
| AAGACTTGATGAGGAGGAGT+TGG | + | chr3.1:47224774-47224793 | MS.gene04558:CDS | 45.0% | |
| AATTCCTGATGACATCGAGC+GGG | + | chr3.1:47224606-47224625 | MS.gene04558:CDS | 45.0% | |
| ATCGGCGGAGATATCTGATT+CGG | - | chr3.1:47224083-47224102 | None:intergenic | 45.0% | |
| CAATTCCTGATGACATCGAG+CGG | + | chr3.1:47224605-47224624 | MS.gene04558:CDS | 45.0% | |
| GAAGAAGAGGTTGTTATCGG+CGG | - | chr3.1:47224098-47224117 | None:intergenic | 45.0% | |
| GATGAGGTGGATAAAACCGA+TGG | + | chr3.1:47224706-47224725 | MS.gene04558:CDS | 45.0% | |
| GGAAAGATATCATTGCGGAG+AGG | - | chr3.1:47224121-47224140 | None:intergenic | 45.0% | |
| GGTGAAGAGGGTTGTGATAA+AGG | - | chr3.1:47223839-47223858 | None:intergenic | 45.0% | |
| TCTGGCTGTTATGGATCTTC+AGG | - | chr3.1:47224315-47224334 | None:intergenic | 45.0% | |
| TGAGGTGGATAAAACCGATG+GGG | + | chr3.1:47224708-47224727 | MS.gene04558:CDS | 45.0% | |
| TGATGATTCTCGAGGAGGTT+CGG | - | chr3.1:47224175-47224194 | None:intergenic | 45.0% | |
| TGGATCTTGAAAACTCGGGT+CGG | - | chr3.1:47224044-47224063 | None:intergenic | 45.0% | |
| TTGATCCTCATTGTCCACCT+TGG | + | chr3.1:47223728-47223747 | MS.gene04558:CDS | 45.0% | |
| TTGTGTGGATGATTTCACGG+TGG | - | chr3.1:47223999-47224018 | None:intergenic | 45.0% | |
| TTTCACGGTGGTTGTAATGG+TGG | - | chr3.1:47223987-47224006 | None:intergenic | 45.0% | |
| ! | CTCGTTTGTCGTGTTATTGC+GGG | + | chr3.1:47224661-47224680 | MS.gene04558:CDS | 45.0% |
| ! | GATTCGGATTGTTTCTTCCG+TGG | - | chr3.1:47224067-47224086 | None:intergenic | 45.0% |
| ! | GCTCGTTTGTCGTGTTATTG+CGG | + | chr3.1:47224660-47224679 | MS.gene04558:CDS | 45.0% |
| ! | TATGTGAGTTGGGACACAAC+GGG | + | chr3.1:47224467-47224486 | MS.gene04558:CDS | 45.0% |
| ! | TGAACATGAAGCATCCAAGG+TGG | - | chr3.1:47223745-47223764 | None:intergenic | 45.0% |
| ! | TTGCGGATTGATGATTCTCG+AGG | - | chr3.1:47224183-47224202 | None:intergenic | 45.0% |
| ! | TTTGTCGTGTTATTGCGGGT+CGG | + | chr3.1:47224665-47224684 | MS.gene04558:CDS | 45.0% |
| !! | CGAGTTTTCAAGATCCACCA+CGG | + | chr3.1:47224047-47224066 | MS.gene04558:CDS | 45.0% |
| !! | CGTGGTGGATCTTGAAAACT+CGG | - | chr3.1:47224049-47224068 | None:intergenic | 45.0% |
| !! | GATTCGGTGTATGTTTGGGA+AGG | - | chr3.1:47224293-47224312 | None:intergenic | 45.0% |
| !! | GTGGTGGATCTTGAAAACTC+GGG | - | chr3.1:47224048-47224067 | None:intergenic | 45.0% |
| !!! | ACGGTTATCTTGTTTTCCGG+CGG | - | chr3.1:47223783-47223802 | None:intergenic | 45.0% |
| AAGCAAGGAAGAACAGCCCT+AGG | - | chr3.1:47224811-47224830 | None:intergenic | 50.0% | |
| ACGCATGAGTTCATTCCCGT+CGG | - | chr3.1:47224428-47224447 | None:intergenic | 50.0% | |
| AGCATCCAAGGTGGACAATG+AGG | - | chr3.1:47223736-47223755 | None:intergenic | 50.0% | |
| ATCCGCAAACCACGCTGTAT+CGG | + | chr3.1:47224195-47224214 | MS.gene04558:CDS | 50.0% | |
| ATCTTTCCATGTACCGCGTG+TGG | + | chr3.1:47224133-47224152 | MS.gene04558:CDS | 50.0% | |
| CACGCTGTATCGGAGCTTAT+CGG | + | chr3.1:47224205-47224224 | MS.gene04558:CDS | 50.0% | |
| CACGGAATCAAAACCCCCAT+CGG | - | chr3.1:47224725-47224744 | None:intergenic | 50.0% | |
| CACTATGTTATGACCCGGGT+CGG | - | chr3.1:47224233-47224252 | None:intergenic | 50.0% | |
| GAGGTGGATAAAACCGATGG+GGG | + | chr3.1:47224709-47224728 | MS.gene04558:CDS | 50.0% | |
| GGATCTTGAAAACTCGGGTC+GGG | - | chr3.1:47224043-47224062 | None:intergenic | 50.0% | |
| GTCAGATTTGGACGATGAGG+TGG | + | chr3.1:47224693-47224712 | MS.gene04558:CDS | 50.0% | |
| TGAGGTGATGATTGGGTGGT+GGG | - | chr3.1:47223962-47223981 | None:intergenic | 50.0% | |
| TGGGTCAGATTTGGACGATG+AGG | + | chr3.1:47224690-47224709 | MS.gene04558:CDS | 50.0% | |
| ! | ATGTGAGTTGGGACACAACG+GGG | + | chr3.1:47224468-47224487 | MS.gene04558:CDS | 50.0% |
| ! | CGGATTGATGATTCTCGAGG+AGG | - | chr3.1:47224180-47224199 | None:intergenic | 50.0% |
| ! | CGGTGAACATGAAGCATCCA+AGG | - | chr3.1:47223748-47223767 | None:intergenic | 50.0% |
| ! | TCGGATTGTTTCTTCCGTGG+TGG | - | chr3.1:47224064-47224083 | None:intergenic | 50.0% |
| ! | TTGTCGTGTTATTGCGGGTC+GGG | + | chr3.1:47224666-47224685 | MS.gene04558:CDS | 50.0% |
| !! | GGTGGACTGAGGTGATGATT+GGG | - | chr3.1:47223969-47223988 | None:intergenic | 50.0% |
| !! | GTGGTTGTAATGGTGGACTG+AGG | - | chr3.1:47223980-47223999 | None:intergenic | 50.0% |
| !! | TGGTGGACTGAGGTGATGAT+TGG | - | chr3.1:47223970-47223989 | None:intergenic | 50.0% |
| !!! | TGGGGGTTTTGATTCCGTGA+TGG | + | chr3.1:47224726-47224745 | MS.gene04558:CDS | 50.0% |
| AACTCCCGCTCGATGTCATC+AGG | - | chr3.1:47224613-47224632 | None:intergenic | 55.0% | |
| CATTGCGGAGAGGGAAGAAG+AGG | - | chr3.1:47224111-47224130 | None:intergenic | 55.0% | |
| CGATAAGCTCCGATACAGCG+TGG | - | chr3.1:47224207-47224226 | None:intergenic | 55.0% | |
| CGATACAGCGTTCGTCATGG+CGG | - | chr3.1:47224405-47224424 | None:intergenic | 55.0% | |
| CTCCGATACAGCGTGGTTTG+CGG | - | chr3.1:47224200-47224219 | None:intergenic | 55.0% | |
| CTGAGGTGATGATTGGGTGG+TGG | - | chr3.1:47223963-47223982 | None:intergenic | 55.0% | |
| CTGGAAAATCTCGCCACACG+CGG | - | chr3.1:47224149-47224168 | None:intergenic | 55.0% | |
| GGACTGAGGTGATGATTGGG+TGG | - | chr3.1:47223966-47223985 | None:intergenic | 55.0% | |
| GTGAAGATTAAAGCCGCGCG+TGG | + | chr3.1:47224370-47224389 | MS.gene04558:CDS | 55.0% | |
| ! | GTGTTATTGCGGGTCGGGTT+GGG | + | chr3.1:47224671-47224690 | MS.gene04558:CDS | 55.0% |
| ! | TCTCGAGGAGGTTCGGTTTC+TGG | - | chr3.1:47224168-47224187 | None:intergenic | 55.0% |
| ! | TTTCCACGCTGTCGACTAGC+TGG | + | chr3.1:47224569-47224588 | MS.gene04558:CDS | 55.0% |
| ! | TTTGATTCCGTGATGGCGCG+CGG | + | chr3.1:47224733-47224752 | MS.gene04558:CDS | 55.0% |
| !! | TGATGATTGGGTGGTGGGAG+TGG | - | chr3.1:47223957-47223976 | None:intergenic | 55.0% |
| !!! | ATCTTGTTTTCCGGCGGTCG+CGG | - | chr3.1:47223777-47223796 | None:intergenic | 55.0% |
| ACGAACGCTGTATCGCCGAC+GGG | + | chr3.1:47224410-47224429 | MS.gene04558:CDS | 60.0% | |
| ATCTCGCCACACGCGGTACA+TGG | - | chr3.1:47224142-47224161 | None:intergenic | 60.0% | |
| CGGCGATACAGCGTTCGTCA+TGG | - | chr3.1:47224408-47224427 | None:intergenic | 60.0% | |
| GACGAACGCTGTATCGCCGA+CGG | + | chr3.1:47224409-47224428 | MS.gene04558:CDS | 60.0% | |
| GAGCTTATCGGATCCGACCC+GGG | + | chr3.1:47224217-47224236 | MS.gene04558:CDS | 60.0% | |
| GGAGCTTATCGGATCCGACC+CGG | + | chr3.1:47224216-47224235 | MS.gene04558:CDS | 60.0% | |
| ! | CACGCTGTCGACTAGCTGGA+GGG | + | chr3.1:47224573-47224592 | MS.gene04558:CDS | 60.0% |
| ! | CGTGTTATTGCGGGTCGGGT+TGG | + | chr3.1:47224670-47224689 | MS.gene04558:CDS | 60.0% |
| !! | GGGTCGGGTTGGGTCAGATT+TGG | + | chr3.1:47224681-47224700 | MS.gene04558:CDS | 60.0% |
| !! | TGATTGGGTGGTGGGAGTGG+TGG | - | chr3.1:47223954-47223973 | None:intergenic | 60.0% |
| CCTCCAGCTAGTCGACAGCG+TGG | - | chr3.1:47224575-47224594 | None:intergenic | 65.0% | |
| ! | CCACGCTGTCGACTAGCTGG+AGG | + | chr3.1:47224572-47224591 | MS.gene04558:CDS | 65.0% |
| ! | TTGTTTTCCGGCGGTCGCGG+CGG | - | chr3.1:47223774-47223793 | None:intergenic | 65.0% |
| GCTCTCGCCGCGCGCCATCA+CGG | - | chr3.1:47224743-47224762 | None:intergenic | 75.0% | |
| ! | GTGATGGCGCGCGGCGAGAG+CGG | + | chr3.1:47224742-47224761 | MS.gene04558:CDS | 75.0% |
| ! | GCGGCGCGTGACACCACGCG+CGG | - | chr3.1:47224386-47224405 | None:intergenic | 80.0% |
| ! | ACCGTCGCCGCCGCGACCGC+CGG | + | chr3.1:47223764-47223783 | MS.gene04558:CDS | 85.0% |
| ! | TCCGGCGGTCGCGGCGGCGA+CGG | - | chr3.1:47223768-47223787 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 47223686 | 47224852 | 47223686 | ID=MS.gene04558 |
| chr3.1 | mRNA | 47223686 | 47224852 | 47223686 | ID=MS.gene04558.t1;Parent=MS.gene04558 |
| chr3.1 | exon | 47223686 | 47224852 | 47223686 | ID=MS.gene04558.t1.exon1;Parent=MS.gene04558.t1 |
| chr3.1 | CDS | 47223686 | 47224852 | 47223686 | ID=cds.MS.gene04558.t1;Parent=MS.gene04558.t1 |
| Gene Sequence |
| Protein sequence |
