AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045613

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045613.t1 MTR_5g042030 91.930 285 21 2 1 284 1 284 3.87e-172 477
MS.gene045613.t1 MTR_4g082230 41.742 333 113 8 7 261 12 341 2.67e-74 233
MS.gene045613.t1 MTR_4g082290 49.801 251 75 5 5 207 10 257 5.08e-72 227
MS.gene045613.t1 MTR_6g012690 51.351 222 84 3 5 220 10 213 3.19e-71 223
MS.gene045613.t1 MTR_7g011170 61.350 163 58 2 5 163 10 171 1.12e-69 218
MS.gene045613.t1 MTR_8g031360 58.974 156 59 2 5 155 11 166 5.19e-62 198
MS.gene045613.t1 MTR_2g011660 69.748 119 36 0 6 124 12 130 9.09e-60 194
MS.gene045613.t1 MTR_7g076740 57.692 156 61 2 6 156 11 166 1.83e-59 191
MS.gene045613.t1 MTR_5g029840 66.935 124 41 0 5 128 10 133 3.46e-59 192
MS.gene045613.t1 MTR_4g091490 68.908 119 37 0 6 124 12 130 7.55e-59 192
MS.gene045613.t1 MTR_3g074520 65.289 121 42 0 6 126 11 131 3.92e-58 189
MS.gene045613.t1 MTR_2g089620 68.908 119 37 0 6 124 11 129 1.42e-56 185
MS.gene045613.t1 MTR_4g478180 64.706 119 42 0 6 124 12 130 4.95e-56 184
MS.gene045613.t1 MTR_5g007370 42.411 224 118 4 6 224 11 228 5.03e-55 180
MS.gene045613.t1 MTR_1g100653 51.190 168 75 3 6 173 11 171 5.40e-55 180
MS.gene045613.t1 MTR_4g073420 51.829 164 78 1 9 172 14 176 4.91e-54 177
MS.gene045613.t1 MTR_1g085640 62.121 132 48 1 7 136 12 143 6.16e-54 180
MS.gene045613.t1 MTR_1g085040 65.854 123 42 0 7 129 12 134 1.19e-53 178
MS.gene045613.t1 MTR_7g110830 63.200 125 46 0 7 131 12 136 8.82e-53 176
MS.gene045613.t1 MTR_7g111290 62.222 135 51 0 7 141 12 146 1.50e-52 176
MS.gene045613.t1 MTR_4g102380 63.025 119 44 0 5 123 10 128 7.41e-52 171
MS.gene045613.t1 MTR_3g461490 60.833 120 47 0 7 126 12 131 1.32e-51 172
MS.gene045613.t1 MTR_1g112760 44.828 203 95 2 7 206 13 201 2.76e-51 168
MS.gene045613.t1 MTR_8g095390 66.087 115 39 0 9 123 14 128 3.35e-51 171
MS.gene045613.t1 MTR_3g077110 52.532 158 61 2 7 164 12 155 2.03e-50 169
MS.gene045613.t1 MTR_4g105130 63.248 117 43 0 7 123 12 128 2.27e-50 170
MS.gene045613.t1 MTR_2g064160 61.739 115 44 0 7 121 11 125 2.98e-50 168
MS.gene045613.t1 MTR_1g043080 67.290 107 35 0 6 112 11 117 6.01e-50 166
MS.gene045613.t1 MTR_5g078140 57.037 135 58 0 5 139 10 144 8.77e-50 167
MS.gene045613.t1 MTR_5g079670 62.069 116 44 0 7 122 11 126 1.92e-49 163
MS.gene045613.t1 MTR_3g065440 62.295 122 46 0 5 126 10 131 4.07e-49 165
MS.gene045613.t1 MTR_1g043050 67.290 107 35 0 6 112 11 117 5.77e-49 163
MS.gene045613.t1 MTR_3g097450 64.035 114 41 0 9 122 14 127 7.97e-49 164
MS.gene045613.t1 MTR_1g076150 65.421 107 37 0 5 111 10 116 2.11e-48 162
MS.gene045613.t1 MTR_4g485530 62.832 113 42 0 9 121 14 126 8.27e-48 158
MS.gene045613.t1 MTR_2g089450 65.741 108 37 0 6 113 11 118 9.50e-48 160
MS.gene045613.t1 MTR_7g096930 66.355 107 36 0 5 111 10 116 9.87e-48 160
MS.gene045613.t1 MTR_7g115650 61.682 107 41 0 5 111 10 116 2.45e-47 157
MS.gene045613.t1 MTR_3g083540 57.143 119 51 0 5 123 39 157 5.92e-47 159
MS.gene045613.t1 MTR_6g009430 55.462 119 53 0 7 125 12 130 1.22e-46 159
MS.gene045613.t1 MTR_0008s0390 63.551 107 39 0 6 112 12 118 2.62e-46 157
MS.gene045613.t1 MTR_2g067420 68.687 99 31 0 7 105 14 112 4.07e-46 158
MS.gene045613.t1 MTR_3g039990 40.437 183 96 2 5 182 11 185 7.34e-46 157
MS.gene045613.t1 MTR_0008s0470 62.617 107 40 0 6 112 12 118 7.78e-46 156
MS.gene045613.t1 MTR_8g027345 61.017 118 41 1 1 113 1 118 1.04e-45 156
MS.gene045613.t1 MTR_2g089420 44.554 202 95 5 6 206 10 195 1.37e-45 159
MS.gene045613.t1 MTR_0251s0050 62.264 106 40 0 6 111 12 117 4.57e-45 153
MS.gene045613.t1 MTR_7g117730 60.748 107 42 0 5 111 10 116 9.76e-45 152
MS.gene045613.t1 MTR_7g087130 55.556 117 50 1 5 119 10 126 4.23e-44 153
MS.gene045613.t1 MTR_0140s0030 57.944 107 45 0 5 111 11 117 5.59e-44 152
MS.gene045613.t1 MTR_0489s0020 57.944 107 45 0 5 111 11 117 5.59e-44 152
MS.gene045613.t1 MTR_2g099740 59.649 114 46 0 7 120 12 125 7.74e-44 154
MS.gene045613.t1 MTR_7g010210 57.547 106 45 0 6 111 11 116 8.84e-44 152
MS.gene045613.t1 MTR_7g010210 57.547 106 45 0 6 111 11 116 9.99e-44 150
MS.gene045613.t1 MTR_4g125520 54.478 134 53 1 6 139 11 136 1.44e-43 150
MS.gene045613.t1 MTR_8g017440 58.407 113 47 0 7 119 12 124 1.46e-43 151
MS.gene045613.t1 MTR_4g065017 58.268 127 51 1 7 131 17 143 3.21e-43 150
MS.gene045613.t1 MTR_8g098860 60.000 105 42 0 7 111 12 116 9.83e-43 149
MS.gene045613.t1 MTR_8g017540 58.407 113 47 0 7 119 58 170 1.32e-42 150
MS.gene045613.t1 MTR_2g097910 63.810 105 38 0 7 111 20 124 1.63e-42 148
MS.gene045613.t1 MTR_4g057635 58.621 116 46 2 7 121 12 126 2.42e-42 148
MS.gene045613.t1 MTR_4g121460 58.879 107 44 0 5 111 10 116 2.82e-42 148
MS.gene045613.t1 MTR_6g012180 60.000 100 40 0 6 105 11 110 3.18e-42 147
MS.gene045613.t1 MTR_8g017500 52.273 132 57 1 7 132 12 143 3.63e-42 148
MS.gene045613.t1 MTR_1g100667 58.261 115 47 1 8 122 14 127 1.78e-41 144
MS.gene045613.t1 MTR_2g034790 36.170 235 113 6 5 227 10 219 2.80e-41 145
MS.gene045613.t1 MTR_8g017340 61.468 109 41 1 12 119 17 125 3.47e-41 148
MS.gene045613.t1 MTR_5g010020 61.616 99 38 0 7 105 12 110 5.74e-41 145
MS.gene045613.t1 MTR_5g014990 58.879 107 43 1 7 112 12 118 6.82e-41 144
MS.gene045613.t1 MTR_1g017140 58.879 107 43 1 7 112 12 118 8.77e-41 144
MS.gene045613.t1 MTR_0063s0090 61.165 103 40 0 6 108 11 113 8.89e-41 141
MS.gene045613.t1 MTR_3g028740 61.905 105 40 0 7 111 22 126 1.35e-40 144
MS.gene045613.t1 MTR_1g017000 52.419 124 55 3 7 129 12 132 1.41e-40 141
MS.gene045613.t1 MTR_3g103570 57.009 107 45 1 7 112 12 118 1.77e-40 144
MS.gene045613.t1 MTR_0008s0280 58.654 104 43 0 6 109 11 114 3.24e-40 140
MS.gene045613.t1 MTR_2g095520 64.000 100 35 1 7 105 12 111 3.45e-40 142
MS.gene045613.t1 MTR_8g017350 60.550 109 42 1 12 119 17 125 1.49e-39 146
MS.gene045613.t1 MTR_6g055910 58.491 106 44 0 8 113 15 120 2.84e-39 139
MS.gene045613.t1 MTR_7g102110 55.046 109 48 1 7 114 12 120 7.51e-39 137
MS.gene045613.t1 MTR_8g017390 61.765 102 38 1 12 112 17 118 7.66e-39 142
MS.gene045613.t1 MTR_3g052450 58.182 110 45 1 7 116 40 148 9.72e-39 142
MS.gene045613.t1 MTR_3g052430 58.182 110 45 1 7 116 41 149 1.33e-38 142
MS.gene045613.t1 MTR_7g111290 65.049 103 36 0 39 141 2 104 1.74e-38 138
MS.gene045613.t1 MTR_4g097570 60.606 99 38 1 7 104 12 110 2.70e-38 136
MS.gene045613.t1 MTR_1g073170 52.500 120 53 1 8 127 21 136 1.13e-37 134
MS.gene045613.t1 MTR_8g042410 55.046 109 49 0 2 110 32 140 2.41e-37 139
MS.gene045613.t1 MTR_5g079120 36.449 214 116 5 1 212 55 250 2.44e-37 134
MS.gene045613.t1 MTR_4g100720 58.586 99 41 0 12 110 18 116 2.51e-37 130
MS.gene045613.t1 MTR_3g011610 53.636 110 50 1 7 116 37 145 3.19e-37 138
MS.gene045613.t1 MTR_6g090405 55.140 107 47 1 7 112 12 118 3.48e-37 132
MS.gene045613.t1 MTR_4g097570 60.000 100 38 2 7 104 12 111 9.77e-37 132
MS.gene045613.t1 MTR_7g035075 56.190 105 46 0 7 111 14 118 1.37e-36 129
MS.gene045613.t1 MTR_1g110460 51.351 111 54 0 7 117 26 136 1.57e-36 132
MS.gene045613.t1 MTR_5g078860 52.679 112 53 0 1 112 1 112 1.65e-36 132
MS.gene045613.t1 MTR_0193s0090 41.143 175 88 3 1 175 1 160 3.55e-36 128
MS.gene045613.t1 MTR_7g017260 36.111 216 101 6 1 210 19 203 3.67e-36 130
MS.gene045613.t1 MTR_1g021230 56.731 104 45 0 7 110 57 160 3.68e-36 134
MS.gene045613.t1 MTR_8g020490 58.252 103 43 0 9 111 10 112 3.70e-36 130
MS.gene045613.t1 MTR_1g045610 55.340 103 46 0 8 110 22 124 3.91e-36 130
MS.gene045613.t1 MTR_3g045430 47.899 119 62 0 7 125 13 131 4.26e-36 131
MS.gene045613.t1 MTR_5g078800 51.786 112 54 0 1 112 1 112 4.95e-36 130
MS.gene045613.t1 MTR_5g079220 52.336 107 51 0 6 112 20 126 9.62e-36 129
MS.gene045613.t1 MTR_1g062940 55.238 105 47 0 7 111 6 110 1.08e-35 127
MS.gene045613.t1 MTR_1g086510 50.893 112 55 0 6 117 20 131 1.08e-35 129
MS.gene045613.t1 MTR_0197s0010 55.000 100 45 0 12 111 6 105 1.10e-35 128
MS.gene045613.t1 MTR_5g079290 49.107 112 57 0 1 112 11 122 1.31e-35 129
MS.gene045613.t1 MTR_4g128670 57.000 100 42 1 7 105 12 111 1.45e-35 130
MS.gene045613.t1 MTR_0247s0040 52.778 108 51 0 1 108 1 108 1.55e-35 126
MS.gene045613.t1 MTR_6g006030 55.238 105 47 0 7 111 14 118 4.49e-35 125
MS.gene045613.t1 MTR_5g078930 56.436 101 44 0 8 108 10 110 4.58e-35 126
MS.gene045613.t1 MTR_5g078950 50.926 108 53 0 1 108 1 108 1.86e-34 125
MS.gene045613.t1 MTR_5g078910 35.681 213 120 4 1 209 1 200 2.17e-34 126
MS.gene045613.t1 MTR_7g109320 59.813 107 43 0 5 111 10 116 3.11e-34 127
MS.gene045613.t1 MTR_4g094982 58.824 102 41 1 9 110 5 105 5.91e-34 124
MS.gene045613.t1 MTR_3g101290 59.804 102 40 1 9 110 37 137 5.99e-34 123
MS.gene045613.t1 MTR_8g060940 51.402 107 52 0 1 107 1 107 6.78e-34 124
MS.gene045613.t1 MTR_5g016510 53.043 115 53 1 9 123 5 118 6.96e-34 125
MS.gene045613.t1 MTR_1g086530 34.951 206 109 4 4 188 30 231 1.07e-33 124
MS.gene045613.t1 MTR_4g019370 57.692 104 43 1 9 112 38 140 1.14e-33 125
MS.gene045613.t1 MTR_0001s0360 48.214 112 58 0 1 112 1 112 1.29e-33 123
MS.gene045613.t1 MTR_2g088170 45.342 161 64 3 6 166 28 164 2.81e-33 126
MS.gene045613.t1 MTR_5g062790 50.000 118 57 2 2 118 4 120 5.85e-33 123
MS.gene045613.t1 MTR_5g007300 66.667 78 26 0 6 83 63 140 6.81e-33 118
MS.gene045613.t1 MTR_4g063100 49.515 103 52 0 8 110 8 110 1.02e-32 120
MS.gene045613.t1 MTR_5g088080 50.893 112 53 2 8 118 13 123 1.10e-32 121
MS.gene045613.t1 MTR_5g088150 50.893 112 53 2 8 118 13 123 1.10e-32 121
MS.gene045613.t1 MTR_5g488210 50.893 112 53 2 8 118 13 123 1.10e-32 121
MS.gene045613.t1 MTR_5g088640 50.893 112 53 2 8 118 13 123 1.18e-32 121
MS.gene045613.t1 MTR_5g488170 50.893 112 53 2 8 118 13 123 1.69e-32 120
MS.gene045613.t1 MTR_2g033170 50.442 113 56 0 5 117 22 134 6.70e-32 120
MS.gene045613.t1 MTR_8g006470 30.526 285 169 10 7 280 10 276 7.06e-32 119
MS.gene045613.t1 MTR_2g096380 42.188 128 71 1 7 131 6 133 9.40e-32 118
MS.gene045613.t1 MTR_4g029540 37.963 216 110 9 7 207 10 216 2.23e-31 118
MS.gene045613.t1 MTR_6g015455 52.294 109 51 1 9 117 5 112 1.10e-30 121
MS.gene045613.t1 MTR_1g083630 48.696 115 58 1 2 116 7 120 2.56e-30 120
MS.gene045613.t1 MTR_4g123040 45.833 120 65 0 5 124 22 141 6.38e-30 115
MS.gene045613.t1 MTR_5g088610 46.610 118 61 2 2 118 4 120 3.31e-28 111
MS.gene045613.t1 MTR_5g082910 52.525 99 46 1 9 107 19 116 1.13e-26 105
MS.gene045613.t1 MTR_6g055910 62.162 74 28 0 40 113 18 91 1.93e-26 104
MS.gene045613.t1 MTR_7g061330 48.571 105 53 1 7 111 111 214 4.42e-26 107
MS.gene045613.t1 MTR_7g461410 48.571 105 53 1 7 111 111 214 4.42e-26 107
MS.gene045613.t1 MTR_7g061330 48.571 105 53 1 7 111 75 178 6.14e-26 107
MS.gene045613.t1 MTR_1g026870 45.714 105 56 1 7 111 83 186 4.35e-25 105
MS.gene045613.t1 MTR_3g110028 43.810 105 58 1 7 111 83 186 4.45e-25 105
MS.gene045613.t1 MTR_5g070020 44.231 104 57 1 7 110 120 222 1.02e-24 102
MS.gene045613.t1 MTR_3g463400 42.056 107 61 1 4 110 128 233 1.04e-24 103
MS.gene045613.t1 MTR_4g063100 55.556 72 32 0 39 110 10 81 1.23e-24 99.0
MS.gene045613.t1 MTR_7g037260 31.628 215 133 5 3 212 139 344 1.34e-24 101
MS.gene045613.t1 MTR_3g077650 43.243 111 60 2 1 110 173 281 7.47e-24 100
MS.gene045613.t1 MTR_6g027340 43.363 113 62 2 12 124 19 129 1.57e-23 95.5
MS.gene045613.t1 MTR_4g082040 46.465 99 52 1 12 110 108 205 1.72e-23 99.4
MS.gene045613.t1 MTR_5g049190 48.421 95 48 1 9 103 19 112 2.16e-23 96.3
MS.gene045613.t1 MTR_7g035350 35.374 147 88 2 3 149 219 358 3.51e-23 98.6
MS.gene045613.t1 MTR_5g041570 48.387 93 47 1 12 104 137 228 3.93e-23 98.6
MS.gene045613.t1 MTR_6g027360 42.373 118 66 2 7 124 76 191 4.61e-23 96.7
MS.gene045613.t1 MTR_7g451170 32.995 197 113 5 12 202 194 377 6.74e-23 97.4
MS.gene045613.t1 MTR_4g128190 45.614 114 48 2 6 118 10 110 7.31e-23 94.7
MS.gene045613.t1 MTR_2g096380 44.792 96 50 1 39 131 19 114 1.46e-22 93.2
MS.gene045613.t1 MTR_4g105660 43.590 117 53 3 3 110 168 280 1.48e-22 96.7
MS.gene045613.t1 MTR_3g089045 49.462 93 46 1 12 104 19 110 1.58e-22 94.7
MS.gene045613.t1 MTR_6g074860 47.872 94 46 2 12 104 7 98 1.98e-22 93.6
MS.gene045613.t1 MTR_6g027370 47.826 92 47 1 12 103 102 192 6.45e-22 94.0
MS.gene045613.t1 MTR_0023s0210 49.398 83 42 0 1 83 1 83 6.57e-22 87.8
MS.gene045613.t1 MTR_5g010650 30.453 243 125 8 7 206 108 349 7.91e-22 95.1
MS.gene045613.t1 MTR_4g088015 42.857 98 55 1 12 109 224 320 1.09e-21 94.4
MS.gene045613.t1 MTR_7g086960 45.455 99 53 1 12 110 92 189 2.41e-21 92.4
MS.gene045613.t1 MTR_7g037130 31.308 214 133 6 3 211 139 343 3.15e-21 92.4
MS.gene045613.t1 MTR_1g085880 47.475 99 51 1 12 109 17 115 3.99e-20 86.3
MS.gene045613.t1 MTR_1g085770 47.475 99 51 1 12 109 17 115 1.48e-19 87.0
MS.gene045613.t1 MTR_1g057980 43.434 99 55 1 7 105 78 175 1.95e-19 86.3
MS.gene045613.t1 MTR_7g450950 40.206 97 57 1 9 105 157 252 1.36e-18 84.7
MS.gene045613.t1 MTR_7g061550 44.211 95 51 1 12 104 10 104 9.52e-18 82.4
MS.gene045613.t1 MTR_5g038910 34.454 119 77 1 12 130 29 146 7.28e-17 80.1
MS.gene045613.t1 MTR_5g038910 34.454 119 77 1 12 130 29 146 8.44e-17 80.5
MS.gene045613.t1 MTR_8g468380 34.343 99 64 1 12 110 25 122 8.27e-15 74.3
MS.gene045613.t1 MTR_1g008970 29.605 152 71 4 34 185 120 235 3.00e-12 65.5
MS.gene045613.t1 MTR_6g055910 55.102 49 22 0 65 113 2 50 2.82e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045613.t1 AT5G15310 45.552 281 132 6 5 268 10 286 5.18e-73 227
MS.gene045613.t1 AT5G15310 66.013 153 48 2 5 153 10 162 1.19e-70 221
MS.gene045613.t1 AT5G15310 66.013 153 48 2 5 153 10 162 2.09e-70 218
MS.gene045613.t1 AT3G01140 64.474 152 50 1 6 153 11 162 4.94e-70 220
MS.gene045613.t1 AT3G01140 64.474 152 50 1 6 153 54 205 1.61e-69 220
MS.gene045613.t1 AT3G61250 56.863 153 64 1 5 155 10 162 4.50e-62 198
MS.gene045613.t1 AT4G05100 70.588 119 35 0 6 124 12 130 4.41e-61 196
MS.gene045613.t1 AT3G02940 66.935 124 41 0 6 129 11 134 3.09e-60 194
MS.gene045613.t1 AT3G02940 66.935 124 41 0 6 129 11 134 4.79e-60 194
MS.gene045613.t1 AT3G02940 66.935 124 41 0 6 129 11 134 4.79e-60 194
MS.gene045613.t1 AT4G21440 68.908 119 37 0 6 124 11 129 3.74e-59 192
MS.gene045613.t1 AT4G28110 68.908 119 37 0 6 124 11 129 2.08e-58 188
MS.gene045613.t1 AT5G65230 65.079 126 44 0 2 127 7 132 5.22e-58 188
MS.gene045613.t1 AT5G10280 66.116 121 41 0 6 126 11 131 5.51e-58 189
MS.gene045613.t1 AT5G16770 64.516 124 44 0 6 129 11 134 9.77e-58 188
MS.gene045613.t1 AT5G16770 64.516 124 44 0 6 129 11 134 9.77e-58 188
MS.gene045613.t1 AT5G54230 67.500 120 39 0 7 126 12 131 1.74e-57 187
MS.gene045613.t1 AT5G16770 64.516 124 44 0 6 129 11 134 2.25e-57 187
MS.gene045613.t1 AT5G16770 64.516 124 44 0 6 129 11 134 2.25e-57 187
MS.gene045613.t1 AT1G34670 47.030 202 87 4 6 204 11 195 2.55e-57 188
MS.gene045613.t1 AT4G17785 65.574 122 42 0 6 127 12 133 4.92e-57 187
MS.gene045613.t1 AT4G17785 65.574 122 42 0 6 127 12 133 6.20e-57 187
MS.gene045613.t1 AT1G18570 64.286 126 45 0 5 130 11 136 3.22e-56 185
MS.gene045613.t1 AT5G61420 64.516 124 44 0 6 129 11 134 4.37e-56 185
MS.gene045613.t1 AT5G60890 67.797 118 38 0 6 123 11 128 6.58e-56 182
MS.gene045613.t1 AT1G57560 64.062 128 46 0 7 134 12 139 1.12e-55 181
MS.gene045613.t1 AT1G74080 67.500 120 39 0 3 122 8 127 1.34e-55 182
MS.gene045613.t1 AT5G07690 63.492 126 46 0 6 131 11 136 2.00e-55 182
MS.gene045613.t1 AT1G57560 63.433 134 45 1 7 136 12 145 2.86e-55 181
MS.gene045613.t1 AT5G07700 64.228 123 44 0 6 128 11 133 8.86e-55 181
MS.gene045613.t1 AT5G07700 64.228 123 44 0 6 128 11 133 8.86e-55 181
MS.gene045613.t1 AT1G74430 60.163 123 49 0 6 128 11 133 8.66e-54 176
MS.gene045613.t1 AT4G38620 58.209 134 55 1 9 141 14 147 2.56e-53 175
MS.gene045613.t1 AT5G26660 67.521 117 38 0 7 123 12 128 6.65e-53 176
MS.gene045613.t1 AT4G22680 65.546 119 41 0 5 123 10 128 8.67e-53 173
MS.gene045613.t1 AT4G34990 66.087 115 39 0 9 123 14 128 1.16e-52 173
MS.gene045613.t1 AT1G18710 62.712 118 44 0 6 123 11 128 1.92e-52 172
MS.gene045613.t1 AT4G12350 64.706 119 42 0 5 123 10 128 2.33e-52 173
MS.gene045613.t1 AT1G09540 65.546 119 41 0 7 125 12 130 3.49e-52 174
MS.gene045613.t1 AT4G01680 65.517 116 40 0 7 122 12 127 2.07e-51 169
MS.gene045613.t1 AT3G23250 47.753 178 87 2 5 180 10 183 4.45e-51 169
MS.gene045613.t1 AT3G13540 42.857 196 102 2 5 200 21 206 4.61e-51 168
MS.gene045613.t1 AT5G16600 64.463 121 43 0 5 125 10 130 5.38e-51 171
MS.gene045613.t1 AT2G16720 62.931 116 43 0 7 122 12 127 6.76e-51 168
MS.gene045613.t1 AT4G01680 65.517 116 40 0 7 122 12 127 8.65e-51 170
MS.gene045613.t1 AT5G56110 60.000 120 48 0 7 126 12 131 9.72e-51 169
MS.gene045613.t1 AT4G09460 63.158 114 42 0 9 122 14 127 3.35e-50 166
MS.gene045613.t1 AT1G06180 60.606 132 43 1 5 136 10 132 7.41e-50 165
MS.gene045613.t1 AT1G22640 38.776 245 118 5 7 250 12 225 1.59e-49 164
MS.gene045613.t1 AT3G12720 60.870 115 45 0 7 121 22 136 4.23e-49 165
MS.gene045613.t1 AT1G66230 58.268 127 53 0 5 131 10 136 1.24e-48 163
MS.gene045613.t1 AT1G35515 60.000 115 46 0 7 121 12 126 3.59e-48 159
MS.gene045613.t1 AT2G31180 65.421 107 37 0 5 111 10 116 4.09e-48 160
MS.gene045613.t1 AT1G56160 66.667 105 35 0 7 111 14 118 1.79e-47 160
MS.gene045613.t1 AT4G01680 59.375 128 40 1 7 122 12 139 2.35e-47 162
MS.gene045613.t1 AT1G79180 65.421 107 37 0 7 113 14 120 3.07e-47 160
MS.gene045613.t1 AT1G16490 66.667 105 35 0 7 111 14 118 4.16e-47 159
MS.gene045613.t1 AT5G62320 56.800 125 47 1 5 122 11 135 2.29e-46 156
MS.gene045613.t1 AT5G62470 50.350 143 66 2 5 144 10 150 2.88e-46 159
MS.gene045613.t1 AT3G47600 58.182 110 46 0 5 114 10 119 1.70e-45 156
MS.gene045613.t1 AT5G14340 55.462 119 53 0 5 123 22 140 9.23e-45 153
MS.gene045613.t1 AT3G13890 63.208 106 39 0 7 112 12 117 1.60e-44 154
MS.gene045613.t1 AT1G08810 59.813 107 43 0 5 111 10 116 1.65e-44 152
MS.gene045613.t1 AT1G74650 58.182 110 46 0 5 114 10 119 2.12e-44 153
MS.gene045613.t1 AT5G62470 49.650 143 66 3 5 144 10 149 1.01e-43 152
MS.gene045613.t1 AT1G63910 57.265 117 50 0 7 123 12 128 1.05e-43 152
MS.gene045613.t1 AT5G35550 49.383 162 73 3 7 165 14 169 4.38e-43 148
MS.gene045613.t1 AT3G28910 55.357 112 50 0 6 117 11 122 4.53e-43 150
MS.gene045613.t1 AT3G12820 60.748 107 42 0 7 113 14 120 1.36e-42 146
MS.gene045613.t1 AT5G12870 62.037 108 41 0 7 114 18 125 2.59e-42 147
MS.gene045613.t1 AT3G28470 57.143 119 51 0 7 125 12 130 8.82e-42 146
MS.gene045613.t1 AT3G13890 58.261 115 39 1 7 112 12 126 1.58e-41 147
MS.gene045613.t1 AT1G79180 50.000 140 37 1 7 113 14 153 1.18e-40 144
MS.gene045613.t1 AT5G49330 55.172 116 47 1 1 111 1 116 1.21e-40 144
MS.gene045613.t1 AT5G23000 58.879 107 43 1 7 112 12 118 2.45e-40 143
MS.gene045613.t1 AT3G62610 57.944 107 45 0 5 111 10 116 3.00e-40 143
MS.gene045613.t1 AT5G57620 57.944 107 44 1 7 112 12 118 1.01e-39 141
MS.gene045613.t1 AT3G08500 61.905 105 40 0 7 111 30 134 1.44e-39 141
MS.gene045613.t1 AT5G65790 58.879 107 43 1 7 112 12 118 1.55e-39 142
MS.gene045613.t1 AT2G36890 55.172 116 51 1 7 121 12 127 2.51e-39 139
MS.gene045613.t1 AT5G14750 54.808 104 47 0 8 111 17 120 3.17e-39 136
MS.gene045613.t1 AT3G49690 57.944 107 44 1 7 112 12 118 3.80e-39 139
MS.gene045613.t1 AT4G37780 54.128 109 49 1 5 112 10 118 4.56e-39 139
MS.gene045613.t1 AT5G26660 72.093 86 24 0 38 123 12 97 4.63e-39 139
MS.gene045613.t1 AT2G36890 55.172 116 51 1 7 121 53 168 5.49e-39 139
MS.gene045613.t1 AT4G26930 33.333 276 152 7 7 265 19 279 6.47e-39 140
MS.gene045613.t1 AT5G40350 55.963 109 48 0 7 115 17 125 1.09e-38 135
MS.gene045613.t1 AT2G26960 56.364 110 47 1 7 116 20 128 1.59e-38 140
MS.gene045613.t1 AT5G40330 53.846 104 48 0 8 111 13 116 1.96e-38 135
MS.gene045613.t1 AT5G55020 57.273 110 46 1 7 116 26 134 2.34e-38 141
MS.gene045613.t1 AT5G06100 58.095 105 44 0 6 110 31 135 3.56e-38 140
MS.gene045613.t1 AT2G47460 55.140 107 48 0 5 111 10 116 4.17e-38 138
MS.gene045613.t1 AT5G06100 58.095 105 44 0 6 110 31 135 8.57e-38 140
MS.gene045613.t1 AT5G06100 58.095 105 44 0 6 110 31 135 8.57e-38 140
MS.gene045613.t1 AT5G06100 58.095 105 44 0 6 110 31 135 8.57e-38 140
MS.gene045613.t1 AT5G06100 58.095 105 44 0 6 110 31 135 8.57e-38 140
MS.gene045613.t1 AT4G25560 55.660 106 47 0 8 113 11 116 1.13e-37 134
MS.gene045613.t1 AT5G52260 59.434 106 43 0 8 113 13 118 3.43e-37 133
MS.gene045613.t1 AT2G32460 52.991 117 54 1 6 122 17 132 3.93e-37 137
MS.gene045613.t1 AT2G32460 52.991 117 54 1 6 122 5 120 4.81e-37 137
MS.gene045613.t1 AT3G48920 54.902 102 46 0 8 109 19 120 1.10e-36 131
MS.gene045613.t1 AT3G24310 56.190 105 46 0 6 110 17 121 1.50e-36 131
MS.gene045613.t1 AT3G11440 55.769 104 46 0 7 110 41 144 1.78e-36 135
MS.gene045613.t1 AT3G27920 51.429 105 51 0 8 112 15 119 2.13e-36 130
MS.gene045613.t1 AT4G13480 51.220 123 50 1 8 130 7 119 2.86e-36 130
MS.gene045613.t1 AT3G53200 55.769 104 46 0 7 110 9 112 2.97e-36 130
MS.gene045613.t1 AT3G27810 51.754 114 55 0 7 120 20 133 3.59e-36 129
MS.gene045613.t1 AT3G11440 55.769 104 46 0 7 110 41 144 4.16e-36 135
MS.gene045613.t1 AT3G11440 55.769 104 46 0 7 110 41 144 4.16e-36 135
MS.gene045613.t1 AT3G11440 55.769 104 46 0 7 110 41 144 4.16e-36 135
MS.gene045613.t1 AT3G30210 55.769 104 46 0 6 109 26 129 4.19e-36 130
MS.gene045613.t1 AT3G01530 54.286 105 48 0 7 111 25 129 5.72e-36 128
MS.gene045613.t1 AT1G48000 52.381 105 50 0 5 109 30 134 1.27e-35 128
MS.gene045613.t1 AT5G52600 54.808 104 47 0 7 110 12 115 1.32e-35 127
MS.gene045613.t1 AT1G25340 47.826 115 60 0 8 122 19 133 3.07e-35 128
MS.gene045613.t1 AT2G47190 48.649 111 57 0 7 117 20 130 3.63e-35 128
MS.gene045613.t1 AT1G68320 46.552 116 62 0 7 122 19 134 1.93e-33 124
MS.gene045613.t1 AT5G35550 51.938 129 53 3 40 165 50 172 3.34e-33 122
MS.gene045613.t1 AT1G66370 50.476 105 52 0 6 110 7 111 4.18e-33 122
MS.gene045613.t1 AT3G06490 47.581 124 65 0 1 124 13 136 1.42e-32 122
MS.gene045613.t1 AT2G23290 57.843 102 42 1 9 110 13 113 1.72e-32 122
MS.gene045613.t1 AT4G37260 57.843 102 42 1 9 110 13 113 2.43e-32 121
MS.gene045613.t1 AT3G46130 47.273 110 58 0 1 110 3 112 1.92e-31 117
MS.gene045613.t1 AT5G59780 48.544 103 53 0 8 110 9 111 2.24e-31 117
MS.gene045613.t1 AT2G39880 56.863 102 43 1 9 110 50 150 3.48e-31 119
MS.gene045613.t1 AT5G49620 45.161 124 68 0 1 124 20 143 3.96e-31 118
MS.gene045613.t1 AT3G60460 50.459 109 52 2 7 114 11 118 4.23e-31 118
MS.gene045613.t1 AT1G66380 53.333 105 49 0 6 110 7 111 6.39e-31 113
MS.gene045613.t1 AT2G26950 49.091 110 55 1 7 116 16 124 1.02e-30 118
MS.gene045613.t1 AT5G67300 53.922 102 46 1 9 110 6 106 1.46e-30 116
MS.gene045613.t1 AT1G56650 53.333 105 49 0 6 110 7 111 2.32e-30 114
MS.gene045613.t1 AT1G25340 45.217 115 58 1 8 122 19 128 2.41e-30 115
MS.gene045613.t1 AT3G09230 54.808 104 46 1 9 112 55 157 2.96e-30 117
MS.gene045613.t1 AT3G50060 51.961 102 48 1 9 110 6 106 4.65e-30 115
MS.gene045613.t1 AT1G25340 42.029 138 65 2 8 135 19 151 4.90e-30 115
MS.gene045613.t1 AT3G47600 64.000 75 27 0 40 114 39 113 1.62e-29 114
MS.gene045613.t1 AT3G12820 69.014 71 22 0 43 113 2 72 1.65e-29 110
MS.gene045613.t1 AT1G66390 51.429 105 51 0 6 110 7 111 3.08e-29 112
MS.gene045613.t1 AT3G55730 40.854 164 76 3 9 152 56 218 6.87e-29 114
MS.gene045613.t1 AT5G40350 61.842 76 29 0 40 115 5 80 1.20e-28 108
MS.gene045613.t1 AT5G14750 59.740 77 28 1 35 111 13 86 1.25e-28 108
MS.gene045613.t1 AT3G53200 65.753 73 25 0 38 110 7 79 3.23e-28 107
MS.gene045613.t1 AT1G22640 35.176 199 97 5 53 250 1 168 7.36e-28 107
MS.gene045613.t1 AT5G49620 40.580 138 68 1 1 124 20 157 1.45e-27 108
MS.gene045613.t1 AT1G71030 54.217 83 38 0 46 128 5 87 2.40e-27 105
MS.gene045613.t1 AT1G71030 54.217 83 38 0 46 128 19 101 3.65e-27 105
MS.gene045613.t1 AT5G58850 44.000 125 64 2 7 131 103 221 9.29e-27 108
MS.gene045613.t1 AT3G27810 55.556 81 36 0 40 120 4 84 1.62e-26 102
MS.gene045613.t1 AT1G18960 40.945 127 71 3 1 126 1 124 1.49e-25 103
MS.gene045613.t1 AT5G02320 45.714 105 56 1 7 111 125 228 6.12e-25 104
MS.gene045613.t1 AT5G02320 45.714 105 56 1 7 111 125 228 6.12e-25 104
MS.gene045613.t1 AT5G02320 45.714 105 56 1 7 111 65 168 6.42e-25 103
MS.gene045613.t1 AT4G32730 45.714 105 56 1 7 111 85 188 7.69e-25 104
MS.gene045613.t1 AT4G32730 45.714 105 56 1 7 111 85 188 7.69e-25 104
MS.gene045613.t1 AT4G32730 45.714 105 56 1 7 111 85 188 7.69e-25 104
MS.gene045613.t1 AT4G32730 45.714 105 56 1 7 111 85 188 7.69e-25 104
MS.gene045613.t1 AT4G32730 45.714 105 56 1 7 111 85 188 9.28e-25 104
MS.gene045613.t1 AT5G59780 56.164 73 32 0 38 110 18 90 1.12e-24 99.0
MS.gene045613.t1 AT5G11050 46.078 102 54 1 9 110 105 205 1.15e-24 102
MS.gene045613.t1 AT1G69560 37.162 148 81 2 12 148 110 256 1.19e-24 101
MS.gene045613.t1 AT1G69560 37.162 148 81 2 12 148 126 272 1.26e-24 101
MS.gene045613.t1 AT3G09370 46.296 108 49 2 7 110 133 235 1.62e-24 102
MS.gene045613.t1 AT3G09370 46.296 108 49 2 7 110 128 230 1.68e-24 102
MS.gene045613.t1 AT5G40360 44.762 105 56 2 7 111 156 258 1.69e-24 101
MS.gene045613.t1 AT3G09370 46.296 108 49 2 7 110 141 243 1.80e-24 102
MS.gene045613.t1 AT3G46130 56.164 73 32 0 38 110 18 90 2.57e-24 98.6
MS.gene045613.t1 AT5G15310 35.266 207 113 6 79 268 5 207 3.62e-24 98.2
MS.gene045613.t1 AT1G17950 45.455 99 53 1 12 110 8 105 4.22e-24 98.2
MS.gene045613.t1 AT4G18770 44.762 105 57 1 7 111 215 318 4.40e-24 101
MS.gene045613.t1 AT3G46130 55.556 72 32 0 39 110 9 80 5.46e-24 97.4
MS.gene045613.t1 AT3G27785 41.071 112 65 1 2 113 182 292 8.43e-24 100
MS.gene045613.t1 AT1G26780 47.475 99 51 1 12 110 101 198 2.82e-23 96.7
MS.gene045613.t1 AT1G26780 47.475 99 51 1 12 110 101 198 3.58e-23 97.8
MS.gene045613.t1 AT3G23250 43.077 130 68 2 53 180 1 126 4.91e-23 94.7
MS.gene045613.t1 AT5G11510 40.000 105 62 1 7 111 79 182 7.92e-23 98.6
MS.gene045613.t1 AT5G11510 40.000 105 62 1 7 111 79 182 7.92e-23 98.6
MS.gene045613.t1 AT5G11510 40.000 105 62 1 7 111 79 182 7.92e-23 98.6
MS.gene045613.t1 AT5G11510 40.000 105 62 1 7 111 79 182 1.11e-22 98.2
MS.gene045613.t1 AT5G11510 40.000 105 62 1 7 111 79 182 1.19e-22 98.2
MS.gene045613.t1 AT5G17800 47.475 99 51 1 12 110 96 193 1.26e-22 95.9
MS.gene045613.t1 AT1G73410 46.465 99 52 1 12 110 9 106 4.13e-22 92.8
MS.gene045613.t1 AT1G73410 46.465 99 52 1 12 110 9 106 4.93e-22 91.7
MS.gene045613.t1 AT4G33450 42.424 99 56 1 12 110 22 119 7.95e-22 92.0
MS.gene045613.t1 AT1G66380 59.722 72 29 0 39 110 7 78 6.43e-21 85.9
MS.gene045613.t1 AT3G29020 43.564 101 54 2 12 111 68 166 1.05e-20 88.6
MS.gene045613.t1 AT3G29020 43.564 101 54 2 12 111 70 168 2.41e-20 89.0
MS.gene045613.t1 AT1G66380 51.220 82 40 0 6 87 7 88 2.48e-20 84.3
MS.gene045613.t1 AT5G39700 44.118 102 55 2 12 113 59 158 3.71e-20 86.3
MS.gene045613.t1 AT5G14750 55.932 59 26 0 53 111 1 59 7.53e-19 81.3
MS.gene045613.t1 AT5G14750 55.932 59 26 0 53 111 1 59 7.53e-19 81.3
MS.gene045613.t1 AT2G25230 43.000 100 55 2 12 111 29 126 2.33e-18 82.4
MS.gene045613.t1 AT2G02820 40.404 99 58 1 12 110 33 130 3.01e-18 83.6
MS.gene045613.t1 AT5G61420 66.667 54 18 0 76 129 2 55 4.11e-18 82.8
MS.gene045613.t1 AT4G00540 42.593 108 58 2 7 111 101 207 4.31e-18 84.0
MS.gene045613.t1 AT2G02820 40.404 99 58 1 12 110 33 130 5.69e-18 84.0
MS.gene045613.t1 AT2G02820 40.404 99 58 1 12 110 33 130 6.33e-18 84.0
MS.gene045613.t1 AT4G00540 42.593 108 58 2 7 111 99 205 7.24e-18 83.6
MS.gene045613.t1 AT2G37630 45.263 95 50 1 12 104 7 101 7.40e-18 82.8
MS.gene045613.t1 AT1G14350 39.394 99 59 1 12 110 28 125 3.73e-17 81.3
MS.gene045613.t1 AT1G14350 39.394 99 59 1 12 110 28 125 3.73e-17 81.3
MS.gene045613.t1 AT4G28110 71.429 42 12 0 83 124 4 45 1.52e-15 73.9
MS.gene045613.t1 AT5G40430 36.190 105 64 3 7 111 52 153 8.28e-15 72.8
MS.gene045613.t1 AT3G18100 37.500 96 59 1 8 103 497 591 6.34e-13 69.3
MS.gene045613.t1 AT3G18100 37.500 96 59 1 8 103 545 639 6.62e-13 69.3
MS.gene045613.t1 AT4G25560 58.333 48 20 0 66 113 3 50 6.95e-13 67.0
MS.gene045613.t1 AT3G18100 37.500 96 59 1 8 103 384 478 9.91e-13 68.6
MS.gene045613.t1 AT3G18100 37.500 96 59 1 8 103 332 426 1.02e-12 68.6
MS.gene045613.t1 AT1G74430 49.123 57 29 0 72 128 8 64 2.15e-12 65.1
MS.gene045613.t1 AT1G74650 61.905 42 16 0 73 114 2 43 4.28e-12 65.1
MS.gene045613.t1 AT3G28910 55.556 45 20 0 73 117 2 46 4.25e-11 62.4
MS.gene045613.t1 AT5G14340 60.976 41 16 0 83 123 10 50 4.45e-11 61.2
MS.gene045613.t1 AT1G14350 45.000 60 33 0 51 110 23 82 4.50e-11 63.2
MS.gene045613.t1 AT1G14350 45.000 60 33 0 51 110 23 82 4.50e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCTTCTTGTCTTCTTT+TGG 0.163262 5.3:-29631034 None:intergenic
TTGTTGTTGTTGTTAGATTT+TGG 0.239668 5.3:-29632483 None:intergenic
CTTCAATGGTGACACTTTCA+TGG 0.293424 5.3:+29632908 MS.gene045613:CDS
CTTACCAATGAATTGAAGTT+TGG 0.297168 5.3:+29632753 MS.gene045613:CDS
TTCTCCAAACTTCAATTCAT+TGG 0.311193 5.3:-29632757 None:intergenic
TTCATGGACTTCAATGGAAA+TGG 0.348493 5.3:+29632924 MS.gene045613:CDS
TGCTGTAATGTTACCTGCTC+TGG 0.350524 5.3:-29631104 None:intergenic
ATCAACATGGCCATAGAAAC+TGG 0.362850 5.3:+29631068 MS.gene045613:CDS
GCAAAGAATGCCAGTTTCTA+TGG 0.366432 5.3:-29631078 None:intergenic
GTAAGACAAGGAAGCTCATT+AGG 0.370376 5.3:-29632735 None:intergenic
CATTATCTGTTCTCCTTGGC+AGG 0.386660 5.3:-29632386 None:intergenic
ATTCAGCTTCATGCACTTCT+CGG 0.394016 5.3:+29631303 MS.gene045613:CDS
CATGAAAGTGTCACCATTGA+AGG 0.398904 5.3:-29632907 None:intergenic
GAAGCAAGATCATCAATGTT+AGG 0.403364 5.3:+29632567 MS.gene045613:CDS
AAGAAAAGACTTATCAGAAT+GGG 0.406171 5.3:+29632438 MS.gene045613:CDS
ATACATTGCATTGTTGTGTT+TGG 0.412941 5.3:-29632646 None:intergenic
TTGAAGTTTGGAGAAGGCTT+AGG 0.428185 5.3:+29632765 MS.gene045613:CDS
GCATTTGGAGATTCCTTCAA+TGG 0.432077 5.3:+29632894 MS.gene045613:CDS
GACACTTTCATGGACTTCAA+TGG 0.435257 5.3:+29632918 MS.gene045613:CDS
ATAATGAAATAAAGAATCAT+TGG 0.440805 5.3:+29632403 MS.gene045613:CDS
TTCAGCTTCATGCACTTCTC+GGG 0.444052 5.3:+29631304 MS.gene045613:CDS
CTATCAAACACGTGGCTCAA+TGG 0.446074 5.3:+29632523 MS.gene045613:CDS
ATTTCATTATCTGTTCTCCT+TGG 0.449445 5.3:-29632390 None:intergenic
TATCAAACACGTGGCTCAAT+GGG 0.451135 5.3:+29632524 MS.gene045613:CDS
ATGGTGGCATTGGATGCATT+TGG 0.456791 5.3:+29632879 MS.gene045613:CDS
TTGAAAATGAGTAGGGCTCT+AGG 0.461511 5.3:+29630989 None:intergenic
CATTCTTTGCCCTCCAGAGC+AGG 0.475255 5.3:+29631091 MS.gene045613:CDS
ATCATTATTTGCAAGCATGA+TGG 0.476845 5.3:-29632679 None:intergenic
GCAAGGTGATGATGATCTAA+TGG 0.487418 5.3:+29632860 MS.gene045613:CDS
CAAGAAAAGACTTATCAGAA+TGG 0.489082 5.3:+29632437 MS.gene045613:CDS
TGGCAGGAGAGCTGCTATTG+TGG 0.496430 5.3:-29632370 None:intergenic
TTGTGATTTGAAAATGAGTA+GGG 0.505830 5.3:+29630982 None:intergenic
TATATAGGTCTTAGAAGATG+TGG 0.511267 5.3:+29631195 MS.gene045613:intron
TGATGATCTAATGGTGGCAT+TGG 0.519218 5.3:+29632869 MS.gene045613:CDS
TGTTCGTAATAATAATATCA+TGG 0.528566 5.3:+29632800 MS.gene045613:CDS
TGAAAATGAGTAGGGCTCTA+GGG 0.531154 5.3:+29630990 None:intergenic
TTTGTGATTTGAAAATGAGT+AGG 0.538258 5.3:+29630981 None:intergenic
AATGAATTGAAGTTTGGAGA+AGG 0.539551 5.3:+29632759 MS.gene045613:CDS
CAATAGCAGCTCTCCTGCCA+AGG 0.575828 5.3:+29632373 MS.gene045613:CDS
TTCAATTCATTGGTAAGACA+AGG 0.599973 5.3:-29632747 None:intergenic
TGTAATGTTACCTGCTCTGG+AGG 0.601213 5.3:-29631101 None:intergenic
GAACTTGATGAAGATAGTAA+AGG 0.608417 5.3:-29632606 None:intergenic
GTTTATGTGTCAAAATTGCA+AGG 0.632220 5.3:+29632843 MS.gene045613:CDS
GAAAGAGTTGCAGACTGAGG+TGG 0.635300 5.3:+29631217 MS.gene045613:CDS
AGAAAAGACTTATCAGAATG+GGG 0.641194 5.3:+29632439 MS.gene045613:CDS
CTCATTAGGAAAGCTCAATG+TGG 0.651845 5.3:-29632721 None:intergenic
CAATACTGCTATCAAACACG+TGG 0.670954 5.3:+29632515 MS.gene045613:CDS
ACGAGGAAACTTCAGCTCAG+AGG 0.673756 5.3:+29631266 MS.gene045613:CDS
ATAGCATATGTTAATCAACA+TGG 0.677757 5.3:+29631055 MS.gene045613:CDS
GTAATGTTACCTGCTCTGGA+GGG 0.677991 5.3:-29631100 None:intergenic
CTGAATCCTGATATAAAACG+AGG 0.681945 5.3:+29631249 MS.gene045613:CDS
AAAATCTAACAACAACAACA+AGG 0.689545 5.3:+29632485 MS.gene045613:CDS
TAGGGTTGAAGAAAAGACCA+TGG 0.702833 5.3:+29631008 MS.gene045613:CDS
AGGTGATGATGATCTAATGG+TGG 0.729997 5.3:+29632863 MS.gene045613:CDS
GTGGAAAGAGTTGCAGACTG+AGG 0.736692 5.3:+29631214 MS.gene045613:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAGAAAGAAAAAAA+TGG - chr5.3:29632025-29632044 None:intergenic 10.0%
!! TTTGAAAAAGAAAAATAAAT+GGG + chr5.3:29631576-29631595 MS.gene045613:intron 10.0%
!!! TTTTGAAAAAGAAAAATAAA+TGG + chr5.3:29631575-29631594 MS.gene045613:intron 10.0%
!! ATAATGAAATAAAGAATCAT+TGG + chr5.3:29632403-29632422 MS.gene045613:CDS 15.0%
!!! TTTTATCTTATACTTAAGAT+CGG - chr5.3:29631839-29631858 None:intergenic 15.0%
!! AGATAAAATTGAGTCAAAAA+AGG + chr5.3:29631851-29631870 MS.gene045613:intron 20.0%
!! ATATATAAACTCAAGATTAC+TGG - chr5.3:29631180-29631199 None:intergenic 20.0%
!! ATATTACTCATAATTGAAGA+TGG - chr5.3:29631152-29631171 None:intergenic 20.0%
!! ATCAACTTTCTTTGATATTT+AGG + chr5.3:29631896-29631915 MS.gene045613:intron 20.0%
!! GTAATCTTGAGTTTATATAT+AGG + chr5.3:29631180-29631199 MS.gene045613:intron 20.0%
!! TAGTGAATAATAACATAACA+TGG - chr5.3:29632122-29632141 None:intergenic 20.0%
!! TGTATATTAACCTATTTACA+TGG + chr5.3:29631381-29631400 MS.gene045613:intron 20.0%
!! TGTTCGTAATAATAATATCA+TGG + chr5.3:29632800-29632819 MS.gene045613:CDS 20.0%
!! TTAAATGTAACAACATCTAT+TGG + chr5.3:29631766-29631785 MS.gene045613:intron 20.0%
!!! AGTCAAGTCTTAATATTTTT+TGG - chr5.3:29632247-29632266 None:intergenic 20.0%
! AAAATCTAACAACAACAACA+AGG + chr5.3:29632485-29632504 MS.gene045613:CDS 25.0%
! AAGAAAAGACTTATCAGAAT+GGG + chr5.3:29632438-29632457 MS.gene045613:CDS 25.0%
! ATAGCATATGTTAATCAACA+TGG + chr5.3:29631055-29631074 MS.gene045613:CDS 25.0%
! CTTTCTTCATATTCTCTATT+TGG + chr5.3:29631351-29631370 MS.gene045613:intron 25.0%
! GACAATGCATAATATATGTA+AGG + chr5.3:29632192-29632211 MS.gene045613:intron 25.0%
! TTGATAAAGAGTAATGTTCA+TGG + chr5.3:29632318-29632337 MS.gene045613:intron 25.0%
! TTGATACAATGATACTAACA+CGG + chr5.3:29631706-29631725 MS.gene045613:intron 25.0%
!! TGATAACTTTGTATTTTCGT+TGG - chr5.3:29631629-29631648 None:intergenic 25.0%
!!! CAAGTCTTAATATTTTTTGG+TGG - chr5.3:29632244-29632263 None:intergenic 25.0%
!!! TCTCAAAGTTTTAGAGTTTT+TGG - chr5.3:29631480-29631499 None:intergenic 25.0%
!!! TTGTTGTTGTTGTTAGATTT+TGG - chr5.3:29632486-29632505 None:intergenic 25.0%
!!! TTTTTTTAATCGACAGTATC+TGG - chr5.3:29631973-29631992 None:intergenic 25.0%
AATGAATTGAAGTTTGGAGA+AGG + chr5.3:29632759-29632778 MS.gene045613:CDS 30.0%
ACTTACACGCAAATTAAAGT+AGG + chr5.3:29631931-29631950 MS.gene045613:intron 30.0%
AGAAAAGACTTATCAGAATG+GGG + chr5.3:29632439-29632458 MS.gene045613:CDS 30.0%
ATACATTGCATTGTTGTGTT+TGG - chr5.3:29632649-29632668 None:intergenic 30.0%
ATCATTATTTGCAAGCATGA+TGG - chr5.3:29632682-29632701 None:intergenic 30.0%
ATTTCATTATCTGTTCTCCT+TGG - chr5.3:29632393-29632412 None:intergenic 30.0%
CAAGAAAAGACTTATCAGAA+TGG + chr5.3:29632437-29632456 MS.gene045613:CDS 30.0%
CTTACACGCAAATTAAAGTA+GGG + chr5.3:29631932-29631951 MS.gene045613:intron 30.0%
CTTACCAATGAATTGAAGTT+TGG + chr5.3:29632753-29632772 MS.gene045613:CDS 30.0%
GAACATATAATGTCAGTATC+TGG - chr5.3:29632003-29632022 None:intergenic 30.0%
GAACTTGATGAAGATAGTAA+AGG - chr5.3:29632609-29632628 None:intergenic 30.0%
GTTTATGTGTCAAAATTGCA+AGG + chr5.3:29632843-29632862 MS.gene045613:CDS 30.0%
TATATAGGTCTTAGAAGATG+TGG + chr5.3:29631195-29631214 MS.gene045613:intron 30.0%
TGATACAATGATACTAACAC+GGG + chr5.3:29631707-29631726 MS.gene045613:intron 30.0%
TGCATAATATATGTAAGGTC+CGG + chr5.3:29632197-29632216 MS.gene045613:intron 30.0%
TTCAATTCATTGGTAAGACA+AGG - chr5.3:29632750-29632769 None:intergenic 30.0%
TTCTCCAAACTTCAATTCAT+TGG - chr5.3:29632760-29632779 None:intergenic 30.0%
! AAGTTTCCTCGTTTTATATC+AGG - chr5.3:29631258-29631277 None:intergenic 30.0%
! ATAAGCTTCTTGTCTTCTTT+TGG - chr5.3:29631037-29631056 None:intergenic 30.0%
! GAACAAGTGAGATATTCTTT+TGG + chr5.3:29631326-29631345 MS.gene045613:intron 30.0%
! TAAGCTTCTTGTCTTCTTTT+GGG - chr5.3:29631036-29631055 None:intergenic 30.0%
!! TCAAAGAAAGTTGATGCATT+TGG - chr5.3:29631891-29631910 None:intergenic 30.0%
!!! GTCTTAATATTTTTTGGTGG+TGG - chr5.3:29632241-29632260 None:intergenic 30.0%
AACAATATGCACTTCACAGA+TGG + chr5.3:29632346-29632365 MS.gene045613:intron 35.0%
AGTGCAGTTTCCATGTAAAT+AGG - chr5.3:29631394-29631413 None:intergenic 35.0%
CATAATATATGTAAGGTCCG+GGG + chr5.3:29632199-29632218 MS.gene045613:intron 35.0%
CTGAATCCTGATATAAAACG+AGG + chr5.3:29631249-29631268 MS.gene045613:CDS 35.0%
GAAGCAAGATCATCAATGTT+AGG + chr5.3:29632567-29632586 MS.gene045613:CDS 35.0%
GCATAATATATGTAAGGTCC+GGG + chr5.3:29632198-29632217 MS.gene045613:intron 35.0%
TCGTAACTTCGTATTTGTGT+TGG - chr5.3:29631681-29631700 None:intergenic 35.0%
TTATGTGACCTTGTCTCATT+GGG - chr5.3:29631531-29631550 None:intergenic 35.0%
TTCATGGACTTCAATGGAAA+TGG + chr5.3:29632924-29632943 MS.gene045613:CDS 35.0%
! AAGCTTCTTGTCTTCTTTTG+GGG - chr5.3:29631035-29631054 None:intergenic 35.0%
! CTCGTTTTATATCAGGATTC+AGG - chr5.3:29631251-29631270 None:intergenic 35.0%
!!! GTTAGATTTTGGTTTGTGAG+TGG - chr5.3:29632475-29632494 None:intergenic 35.0%
!!! TAATATTTTTTGGTGGTGGC+CGG - chr5.3:29632237-29632256 None:intergenic 35.0%
ATCAACATGGCCATAGAAAC+TGG + chr5.3:29631068-29631087 MS.gene045613:CDS 40.0%
ATTCAGCTTCATGCACTTCT+CGG + chr5.3:29631303-29631322 MS.gene045613:CDS 40.0%
CAATACTGCTATCAAACACG+TGG + chr5.3:29632515-29632534 MS.gene045613:CDS 40.0%
CACGCAAATTAAAGTAGGGA+AGG + chr5.3:29631936-29631955 MS.gene045613:intron 40.0%
CTCATTAGGAAAGCTCAATG+TGG - chr5.3:29632724-29632743 None:intergenic 40.0%
CTTATGTGACCTTGTCTCAT+TGG - chr5.3:29631532-29631551 None:intergenic 40.0%
CTTCAATGGTGACACTTTCA+TGG + chr5.3:29632908-29632927 MS.gene045613:CDS 40.0%
GACACTTTCATGGACTTCAA+TGG + chr5.3:29632918-29632937 MS.gene045613:CDS 40.0%
GCAAAGAATGCCAGTTTCTA+TGG - chr5.3:29631081-29631100 None:intergenic 40.0%
GCATTTGGAGATTCCTTCAA+TGG + chr5.3:29632894-29632913 MS.gene045613:CDS 40.0%
GTAAGACAAGGAAGCTCATT+AGG - chr5.3:29632738-29632757 None:intergenic 40.0%
TAGGGTTGAAGAAAAGACCA+TGG + chr5.3:29631008-29631027 MS.gene045613:CDS 40.0%
TATCAAACACGTGGCTCAAT+GGG + chr5.3:29632524-29632543 MS.gene045613:CDS 40.0%
TGATGATCTAATGGTGGCAT+TGG + chr5.3:29632869-29632888 MS.gene045613:CDS 40.0%
TTGAAGTTTGGAGAAGGCTT+AGG + chr5.3:29632765-29632784 MS.gene045613:CDS 40.0%
! AGGTGATGATGATCTAATGG+TGG + chr5.3:29632863-29632882 MS.gene045613:CDS 40.0%
! GCAAGGTGATGATGATCTAA+TGG + chr5.3:29632860-29632879 MS.gene045613:CDS 40.0%
!! CATGAAAGTGTCACCATTGA+AGG - chr5.3:29632910-29632929 None:intergenic 40.0%
!!! AATATTTTTTGGTGGTGGCC+GGG - chr5.3:29632236-29632255 None:intergenic 40.0%
!!! AGATTTTGGTTTGTGAGTGG+TGG - chr5.3:29632472-29632491 None:intergenic 40.0%
!!! GATTTTGGTTTGTGAGTGGT+GGG - chr5.3:29632471-29632490 None:intergenic 40.0%
ACCTTGTCTCATTGGGAGTA+GGG - chr5.3:29631524-29631543 None:intergenic 45.0%
CATTATCTGTTCTCCTTGGC+AGG - chr5.3:29632389-29632408 None:intergenic 45.0%
CTATCAAACACGTGGCTCAA+TGG + chr5.3:29632523-29632542 MS.gene045613:CDS 45.0%
TGCTGTAATGTTACCTGCTC+TGG - chr5.3:29631107-29631126 None:intergenic 45.0%
TGTAATGTTACCTGCTCTGG+AGG - chr5.3:29631104-29631123 None:intergenic 45.0%
TTCAGCTTCATGCACTTCTC+GGG + chr5.3:29631304-29631323 MS.gene045613:CDS 45.0%
! ATGGTGGCATTGGATGCATT+TGG + chr5.3:29632879-29632898 MS.gene045613:CDS 45.0%
! GTAATGTTACCTGCTCTGGA+GGG - chr5.3:29631103-29631122 None:intergenic 45.0%
! TGAGTTCAGCTCAGTTGGTA+TGG + chr5.3:29632170-29632189 MS.gene045613:intron 45.0%
!! CATCTATTGGTTTGTGTCGC+AGG + chr5.3:29631779-29631798 MS.gene045613:intron 45.0%
!! TTGTCTTCTTTTGGGGACCA+TGG - chr5.3:29631028-29631047 None:intergenic 45.0%
!!! ATATTTTTTGGTGGTGGCCG+GGG - chr5.3:29632235-29632254 None:intergenic 45.0%
ACCCTACTCCCAATGAGACA+AGG + chr5.3:29631520-29631539 MS.gene045613:intron 50.0%
ACGAGGAAACTTCAGCTCAG+AGG + chr5.3:29631266-29631285 MS.gene045613:CDS 50.0%
CCAACTGAGCTGAACTCACA+AGG - chr5.3:29632168-29632187 None:intergenic 50.0%
CCTTGTGAGTTCAGCTCAGT+TGG + chr5.3:29632165-29632184 MS.gene045613:intron 50.0%
GAAAGAGTTGCAGACTGAGG+TGG + chr5.3:29631217-29631236 MS.gene045613:CDS 50.0%
GACCTTGTCTCATTGGGAGT+AGG - chr5.3:29631525-29631544 None:intergenic 50.0%
GTGGAAAGAGTTGCAGACTG+AGG + chr5.3:29631214-29631233 MS.gene045613:CDS 50.0%
CAATAGCAGCTCTCCTGCCA+AGG + chr5.3:29632373-29632392 MS.gene045613:CDS 55.0%
CATTCTTTGCCCTCCAGAGC+AGG + chr5.3:29631091-29631110 MS.gene045613:CDS 55.0%
TCCGGGGTTCAAATCAACCC+CGG + chr5.3:29632215-29632234 MS.gene045613:intron 55.0%
TGGCAGGAGAGCTGCTATTG+TGG - chr5.3:29632373-29632392 None:intergenic 55.0%
!! GCCGGGGTTGATTTGAACCC+CGG - chr5.3:29632219-29632238 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 29630995 29632971 29630995 ID=MS.gene045613
chr5.3 mRNA 29630995 29632971 29630995 ID=MS.gene045613.t1;Parent=MS.gene045613
chr5.3 exon 29630995 29631112 29630995 ID=MS.gene045613.t1.exon1;Parent=MS.gene045613.t1
chr5.3 CDS 29630995 29631112 29630995 ID=cds.MS.gene045613.t1;Parent=MS.gene045613.t1
chr5.3 exon 29631202 29631331 29631202 ID=MS.gene045613.t1.exon2;Parent=MS.gene045613.t1
chr5.3 CDS 29631202 29631331 29631202 ID=cds.MS.gene045613.t1;Parent=MS.gene045613.t1
chr5.3 exon 29632365 29632971 29632365 ID=MS.gene045613.t1.exon3;Parent=MS.gene045613.t1
chr5.3 CDS 29632365 29632971 29632365 ID=cds.MS.gene045613.t1;Parent=MS.gene045613.t1
Gene Sequence

>MS.gene045613

ATGAGTAGGGCTCTAGGGTTGAAGAAAAGACCATGGTCCCCAAAAGAAGACAAGAAGCTTATAGCATATGTTAATCAACATGGCCATAGAAACTGGCATTCTTTGCCCTCCAGAGCAGGTAACATTACAGCATAGCTTGCTATATATAAAATATCCATCTTCAATTATGAGTAATATATTAACCAGTAATCTTGAGTTTATATATAGGTCTTAGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTACCTGAATCCTGATATAAAACGAGGAAACTTCAGCTCAGAGGAAGATCACACTATTATTCAGCTTCATGCACTTCTCGGGAACAAGTGAGATATTCTTTTGGATCTTTCTTCATATTCTCTATTTGGAAATCTTTGTATATTAACCTATTTACATGGAAACTGCACTTGTTTTATTTTGTTTCTATGAAGTTATAACAAGAGAGACATAATTTTGAAGCATAGTGATTTACCAAAAACTCTAAAACTTTGAGAGAAAACAAACGATAAAAGAAACCCTACTCCCAATGAGACAAGGTCACATAAGATATTGTATCACATGTTTTATTTTTTTGAAAAAGAAAAATAAATGGGTTATTAAGAAGAAAAAACAAGAGAATTCCAACGAAAATACAAAGTTATCAGTCAAAAAAGAAGAATAAGTAAGAGTATTCCAACACAAATACGAAGTTACGAAGAACTTGATACAATGATACTAACACGGGACACAACACAGATAATAATGTGAGAAAGTTGAATAATTAAATGTAACAACATCTATTGGTTTGTGTCGCAGGTTAGCTTTACATAAGAAGTCTCTGTGCTATTTCTCCGATCTTAAGTATAAGATAAAATTGAGTCAAAAAAGGTTAATGAATTAGATCCAAATGCATCAACTTTCTTTGATATTTAGGATCAGAGATAGCACTTACACGCAAATTAAAGTAGGGAAGGAAAATCAGAAACCAGATACTGTCGATTAAAAAAAAAAGAAACCAGATACTGACATTATATGTTCCATTTTTTTCTTTCTAATTTTATGTCATCTATAAAATCACATACAAGAAGTAAAGAATATTATTATTCACTATTCATATATTAGAACACTTGAATGCCATGTTATGTTATTATTCACTATTCGTATATTAAGACTTGACTGTCCTTGTGAGTTCAGCTCAGTTGGTATGGACAATGCATAATATATGTAAGGTCCGGGGTTCAAATCAACCCCGGCCACCACCAAAAAATATTAAGACTTGACTAAGAGAAAACAGAATAGTGATTTTTGTCTAGTACTTGTTGAGATTTAATTTTTGATAAAGAGTAATGTTCATGGATGTGAACAATATGCACTTCACAGATGGTCCACAATAGCAGCTCTCCTGCCAAGGAGAACAGATAATGAAATAAAGAATCATTGGAACAGTAACATCAAGAAAAGACTTATCAGAATGGGGATAGATCCCACCACTCACAAACCAAAATCTAACAACAACAACAAGGACAATGTCAATACTGCTATCAAACACGTGGCTCAATGGGAGAATGTTAGATTAGAAGCTGAAGCAAGATCATCAATGTTAGGAAAAACTCAAACTCAACCTTTACTATCTTCATCAAGTTCATCAAAGTTATCACTAACCAAACACAACAATGCAATGTATAACTTGTGTGCCATCATGCTTGCAAATAATGATGACTCTTTTTCTTCAACATCCACATTGAGCTTTCCTAATGAGCTTCCTTGTCTTACCAATGAATTGAAGTTTGGAGAAGGCTTAGGATCATATGAGAGTGTTCGTAATAATAATATCATGGAAACTATTGCTCAAGATGATGTTTATGTGTCAAAATTGCAAGGTGATGATGATCTAATGGTGGCATTGGATGCATTTGGAGATTCCTTCAATGGTGACACTTTCATGGACTTCAATGGAAATGGAATGTACAATTTTGATGCTAGCTAG
Protein sequence

>MS.gene045613.t1

MSRALGLKKRPWSPKEDKKLIAYVNQHGHRNWHSLPSRAGLRRCGKSCRLRWINYLNPDIKRGNFSSEEDHTIIQLHALLGNKWSTIAALLPRRTDNEIKNHWNSNIKKRLIRMGIDPTTHKPKSNNNNKDNVNTAIKHVAQWENVRLEAEARSSMLGKTQTQPLLSSSSSSKLSLTKHNNAMYNLCAIMLANNDDSFSSTSTLSFPNELPCLTNELKFGEGLGSYESVRNNNIMETIAQDDVYVSKLQGDDDLMVALDAFGDSFNGDTFMDFNGNGMYNFDAS