Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045630.t1 | XP_024639182.1 | 94.2 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 2.50E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045630.t1 | Q84X53 | 46.9 | 245 | 129 | 1 | 50 | 293 | 26 | 270 | 3.4e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045630.t1 | A0A396HQ05 | 94.2 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 1.8e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045630.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045630.t1 | MTR_5g041630 | 96.575 | 292 | 10 | 0 | 1 | 292 | 1 | 292 | 0.0 | 568 |
| MS.gene045630.t1 | MTR_2g049780 | 44.030 | 268 | 144 | 1 | 25 | 292 | 43 | 304 | 3.88e-70 | 219 |
| MS.gene045630.t1 | MTR_2g067230 | 35.069 | 288 | 169 | 5 | 9 | 292 | 26 | 299 | 2.64e-50 | 169 |
| MS.gene045630.t1 | MTR_7g081270 | 35.573 | 253 | 148 | 7 | 51 | 292 | 31 | 279 | 3.42e-33 | 123 |
| MS.gene045630.t1 | MTR_2g034600 | 34.135 | 208 | 131 | 5 | 87 | 293 | 281 | 483 | 5.23e-28 | 112 |
| MS.gene045630.t1 | MTR_2g034600 | 34.135 | 208 | 131 | 5 | 87 | 293 | 342 | 544 | 7.57e-28 | 112 |
| MS.gene045630.t1 | MTR_2g034600 | 34.135 | 208 | 131 | 5 | 87 | 293 | 346 | 548 | 9.26e-28 | 112 |
| MS.gene045630.t1 | MTR_6g003960 | 28.216 | 241 | 166 | 4 | 57 | 292 | 349 | 587 | 3.49e-25 | 105 |
| MS.gene045630.t1 | MTR_5g094610 | 30.000 | 190 | 130 | 1 | 89 | 275 | 262 | 451 | 1.25e-22 | 97.8 |
| MS.gene045630.t1 | MTR_4g070060 | 29.487 | 234 | 157 | 5 | 64 | 293 | 357 | 586 | 9.62e-20 | 89.7 |
| MS.gene045630.t1 | MTR_4g084630 | 26.638 | 229 | 151 | 4 | 74 | 292 | 97 | 318 | 1.26e-16 | 79.3 |
| MS.gene045630.t1 | MTR_4g084630 | 29.252 | 147 | 100 | 3 | 96 | 239 | 48 | 193 | 7.91e-11 | 62.4 |
| MS.gene045630.t1 | MTR_1g115415 | 26.230 | 244 | 140 | 4 | 88 | 293 | 210 | 451 | 1.52e-15 | 77.0 |
| MS.gene045630.t1 | MTR_5g068860 | 24.542 | 273 | 162 | 6 | 63 | 293 | 213 | 483 | 2.00e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045630.t1 | AT2G03050 | 60.816 | 245 | 95 | 1 | 50 | 293 | 26 | 270 | 9.08e-103 | 302 |
| MS.gene045630.t1 | AT2G03050 | 60.816 | 245 | 95 | 1 | 50 | 293 | 25 | 269 | 1.03e-102 | 301 |
| MS.gene045630.t1 | AT2G34620 | 45.188 | 239 | 131 | 0 | 55 | 293 | 53 | 291 | 1.04e-66 | 211 |
| MS.gene045630.t1 | AT2G36000 | 37.975 | 237 | 140 | 3 | 59 | 292 | 75 | 307 | 8.19e-45 | 154 |
| MS.gene045630.t1 | AT2G36000 | 37.975 | 237 | 140 | 3 | 59 | 292 | 75 | 307 | 1.42e-44 | 154 |
| MS.gene045630.t1 | AT3G18870 | 35.833 | 240 | 141 | 5 | 58 | 292 | 37 | 268 | 4.60e-35 | 128 |
| MS.gene045630.t1 | AT1G78930 | 32.174 | 230 | 148 | 3 | 67 | 292 | 349 | 574 | 3.44e-31 | 122 |
| MS.gene045630.t1 | AT4G14605 | 33.010 | 206 | 132 | 5 | 89 | 293 | 268 | 468 | 1.25e-26 | 108 |
| MS.gene045630.t1 | AT4G14605 | 33.010 | 206 | 132 | 5 | 89 | 293 | 268 | 468 | 1.25e-26 | 108 |
| MS.gene045630.t1 | AT5G55580 | 31.088 | 193 | 126 | 3 | 88 | 275 | 148 | 338 | 3.19e-22 | 95.9 |
| MS.gene045630.t1 | AT5G55580 | 31.088 | 193 | 126 | 3 | 88 | 275 | 254 | 444 | 3.87e-22 | 96.3 |
| MS.gene045630.t1 | AT2G21710 | 29.150 | 247 | 162 | 6 | 56 | 293 | 351 | 593 | 2.51e-21 | 94.4 |
| MS.gene045630.t1 | AT4G38160 | 25.000 | 212 | 150 | 2 | 84 | 292 | 115 | 320 | 2.05e-15 | 75.9 |
| MS.gene045630.t1 | AT4G38160 | 25.000 | 212 | 150 | 2 | 84 | 292 | 115 | 320 | 2.05e-15 | 75.9 |
| MS.gene045630.t1 | AT4G38160 | 25.000 | 212 | 150 | 2 | 84 | 292 | 115 | 320 | 2.38e-15 | 75.9 |
| MS.gene045630.t1 | AT4G38160 | 25.000 | 212 | 150 | 2 | 84 | 292 | 115 | 320 | 2.53e-15 | 75.9 |
| MS.gene045630.t1 | AT4G02990 | 25.091 | 275 | 162 | 6 | 61 | 293 | 219 | 491 | 3.58e-13 | 70.1 |
| MS.gene045630.t1 | AT4G02990 | 25.091 | 275 | 162 | 6 | 61 | 293 | 219 | 491 | 3.58e-13 | 70.1 |
| MS.gene045630.t1 | AT2G44020 | 24.180 | 244 | 145 | 5 | 88 | 293 | 215 | 456 | 5.52e-13 | 69.3 |
| MS.gene045630.t1 | AT5G55580 | 29.747 | 158 | 99 | 5 | 129 | 277 | 223 | 377 | 8.58e-12 | 65.5 |
| MS.gene045630.t1 | AT2G21710 | 25.962 | 208 | 145 | 5 | 56 | 256 | 351 | 556 | 1.44e-11 | 65.1 |
Find 56 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATTTGGGATTGAAATT+AGG | 0.172000 | 5.3:+29279219 | None:intergenic |
| ATTGAAGATTTGATAAGATT+TGG | 0.223942 | 5.3:+29279206 | None:intergenic |
| CGGAAAATTAAGCCACGATT+TGG | 0.260905 | 5.3:+29279138 | None:intergenic |
| AAGATTTGGGATTGAAATTA+GGG | 0.261296 | 5.3:+29279220 | None:intergenic |
| TTGAAGATTTGATAAGATTT+GGG | 0.295378 | 5.3:+29279207 | None:intergenic |
| GGAAAATTAAGCCACGATTT+GGG | 0.320963 | 5.3:+29279139 | None:intergenic |
| TAGTGATGGGGAGTTTGATT+AGG | 0.324423 | 5.3:-29277837 | None:intergenic |
| GTGCCAGACGACATTGCTTT+TGG | 0.336067 | 5.3:-29278746 | MS.gene045630:CDS |
| GGGTAGTGGTTGTTGATTGA+TGG | 0.339017 | 5.3:+29279160 | None:intergenic |
| GAACAATGTCTTTCATCAAT+TGG | 0.344109 | 5.3:-29279012 | MS.gene045630:CDS |
| TTGAGGGAATTAGGGTTTGT+TGG | 0.348767 | 5.3:-29278784 | MS.gene045630:CDS |
| TGAGGGAATTAGGGTTTGTT+GGG | 0.358434 | 5.3:-29278783 | MS.gene045630:CDS |
| AACATGGTTGTGAGGTCACC+TGG | 0.360440 | 5.3:-29278646 | MS.gene045630:CDS |
| GGTTCACACGTGAGAAGTTC+AGG | 0.376179 | 5.3:+29278949 | None:intergenic |
| AGAGGACAAGAACGAAGATT+AGG | 0.381324 | 5.3:+29279054 | None:intergenic |
| GAGGACAAGAACGAAGATTA+GGG | 0.384337 | 5.3:+29279055 | None:intergenic |
| CACGCGATGTTGGTTCGGCT+TGG | 0.386943 | 5.3:-29278484 | MS.gene045630:CDS |
| CACGGCACGCGATGTTGGTT+CGG | 0.395457 | 5.3:-29278489 | MS.gene045630:CDS |
| TCCTTTGCAAGAGATGTTGC+AGG | 0.404002 | 5.3:-29278452 | MS.gene045630:intron |
| AAAACTCAACTTTAGGCAAA+AGG | 0.404268 | 5.3:+29278704 | None:intergenic |
| TATCAAGAATTCGACCCATT+TGG | 0.406724 | 5.3:+29278977 | None:intergenic |
| TGATGGGAAAATTGAGAGAT+TGG | 0.409400 | 5.3:+29279177 | None:intergenic |
| CTTGCGGTGTCCTAGATTGT+TGG | 0.417943 | 5.3:-29278848 | MS.gene045630:CDS |
| TTCCTTTGCAGATTAGTGAT+GGG | 0.434300 | 5.3:-29277850 | MS.gene045630:intron |
| CTTCCTTTGCAGATTAGTGA+TGG | 0.436707 | 5.3:-29277851 | MS.gene045630:intron |
| ACACTACTAACCAACAATCT+AGG | 0.454380 | 5.3:+29278838 | None:intergenic |
| TGGCATACACAGAAGCCAAA+TGG | 0.456472 | 5.3:-29278992 | MS.gene045630:CDS |
| TAAGCCACGATTTGGGGTAG+TGG | 0.490119 | 5.3:+29279146 | None:intergenic |
| ATTGAAATTAGGGTTTAAGA+AGG | 0.496197 | 5.3:+29279230 | None:intergenic |
| GGTAGTGGTTGTTGATTGAT+GGG | 0.497264 | 5.3:+29279161 | None:intergenic |
| TCCTTTGCAGATTAGTGATG+GGG | 0.499558 | 5.3:-29277849 | MS.gene045630:intron |
| AAACCAAAAGCAATGTCGTC+TGG | 0.503937 | 5.3:+29278743 | None:intergenic |
| GGGTTTGGGGTTCACACGTG+TGG | 0.504748 | 5.3:-29278677 | MS.gene045630:CDS |
| AAACTCAACTTTAGGCAAAA+GGG | 0.506451 | 5.3:+29278705 | None:intergenic |
| GGCATACACAGAAGCCAAAT+GGG | 0.513752 | 5.3:-29278991 | MS.gene045630:CDS |
| TTGAAATTAGGGTTTAAGAA+GGG | 0.543369 | 5.3:+29279231 | None:intergenic |
| ATTGAGAAGAAAATCAAGAA+GGG | 0.544003 | 5.3:+29278909 | None:intergenic |
| GAAAATTAAGCCACGATTTG+GGG | 0.545355 | 5.3:+29279140 | None:intergenic |
| ACGTGTGGAGGTTTCGAACA+TGG | 0.545852 | 5.3:-29278662 | MS.gene045630:CDS |
| CGTCTGGCACGTGAGAGAGT+GGG | 0.547888 | 5.3:+29278759 | None:intergenic |
| TTTGGGGTTCACACGTGTGG+AGG | 0.549501 | 5.3:-29278674 | MS.gene045630:CDS |
| TCGTCTGGCACGTGAGAGAG+TGG | 0.562386 | 5.3:+29278758 | None:intergenic |
| CATTGAGAAGAAAATCAAGA+AGG | 0.567057 | 5.3:+29278908 | None:intergenic |
| TAAGCCACGGCACGCGATGT+TGG | 0.567872 | 5.3:-29278494 | MS.gene045630:CDS |
| GTCTGGCACGTGAGAGAGTG+GGG | 0.572333 | 5.3:+29278760 | None:intergenic |
| ACCTGCAACATCTCTTGCAA+AGG | 0.590277 | 5.3:+29278451 | None:intergenic |
| TTTGAGAGAAGAAGGGTTTG+GGG | 0.590553 | 5.3:+29279268 | None:intergenic |
| CGAACCAACATCGCGTGCCG+TGG | 0.597886 | 5.3:+29278490 | None:intergenic |
| TTGAGAAGAAAATCAAGAAG+GGG | 0.620983 | 5.3:+29278910 | None:intergenic |
| GTGATGTTGCTGAGTTGAAG+AGG | 0.621889 | 5.3:-29278555 | MS.gene045630:CDS |
| ACATGGTTGTGAGGTCACCT+GGG | 0.651345 | 5.3:-29278645 | MS.gene045630:CDS |
| AGGTTTCGAACATGGTTGTG+AGG | 0.657263 | 5.3:-29278654 | MS.gene045630:CDS |
| TGGAAGGGAGGATTAAGCCA+CGG | 0.663571 | 5.3:-29278507 | MS.gene045630:CDS |
| TGAGAAGAAAATCAAGAAGG+GGG | 0.672373 | 5.3:+29278911 | None:intergenic |
| ACAACCACTACCCCAAATCG+TGG | 0.681573 | 5.3:-29279150 | MS.gene045630:CDS |
| ACACTAAAAGTCAATAACCC+AGG | 0.692067 | 5.3:+29278628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAGATTTGATAAGATT+TGG | + | chr5.3:29277923-29277942 | None:intergenic | 20.0% |
| !! | TTGAAGATTTGATAAGATTT+GGG | + | chr5.3:29277922-29277941 | None:intergenic | 20.0% |
| ! | AAGCTAAAAGAAAAATACTG+AGG | + | chr5.3:29278600-29278619 | None:intergenic | 25.0% |
| ! | ATGTTGAAAAATCAATCTTG+CGG | - | chr5.3:29278262-29278281 | MS.gene045630:intron | 25.0% |
| ! | ATTGAAATTAGGGTTTAAGA+AGG | + | chr5.3:29277899-29277918 | None:intergenic | 25.0% |
| ! | ATTGAGAAGAAAATCAAGAA+GGG | + | chr5.3:29278220-29278239 | None:intergenic | 25.0% |
| ! | GTAGAAAAATTTGAATAAGC+TGG | - | chr5.3:29278800-29278819 | MS.gene045630:CDS | 25.0% |
| ! | TATCAAATAGTGGCATTATA+TGG | - | chr5.3:29278778-29278797 | MS.gene045630:CDS | 25.0% |
| ! | TTCACGAAAAACTCAAATTT+CGG | + | chr5.3:29278540-29278559 | None:intergenic | 25.0% |
| ! | TTGAAATTAGGGTTTAAGAA+GGG | + | chr5.3:29277898-29277917 | None:intergenic | 25.0% |
| !! | AAGATTTGGGATTGAAATTA+GGG | + | chr5.3:29277909-29277928 | None:intergenic | 25.0% |
| !! | ACATTGTTCTACAGATTTTA+GGG | + | chr5.3:29278103-29278122 | None:intergenic | 25.0% |
| !! | ATTAGTTGAAGTAGTTGTTT+TGG | - | chr5.3:29278946-29278965 | MS.gene045630:CDS | 25.0% |
| !! | GATAACTTGTGTTAAAGATA+GGG | - | chr5.3:29279175-29279194 | MS.gene045630:CDS | 25.0% |
| !! | TAAGATTTGGGATTGAAATT+AGG | + | chr5.3:29277910-29277929 | None:intergenic | 25.0% |
| !! | TGATAACTTGTGTTAAAGAT+AGG | - | chr5.3:29279174-29279193 | MS.gene045630:CDS | 25.0% |
| !! | TTTTAGTGTGGATAAGAATT+TGG | - | chr5.3:29278512-29278531 | MS.gene045630:CDS | 25.0% |
| !!! | AGATTGATTTTTCAACATCA+TGG | + | chr5.3:29278260-29278279 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTAGCTTGGAA+GGG | - | chr5.3:29278604-29278623 | MS.gene045630:CDS | 25.0% |
| !!! | CAAGGTATATAACTTTTTCT+CGG | + | chr5.3:29278011-29278030 | None:intergenic | 25.0% |
| !!! | TATTTTTCTTTTAGCTTGGA+AGG | - | chr5.3:29278603-29278622 | MS.gene045630:CDS | 25.0% |
| !!! | TCAGTATTTTTCTTTTAGCT+TGG | - | chr5.3:29278599-29278618 | MS.gene045630:CDS | 25.0% |
| AAAACTCAACTTTAGGCAAA+AGG | + | chr5.3:29278425-29278444 | None:intergenic | 30.0% | |
| AAACTCAACTTTAGGCAAAA+GGG | + | chr5.3:29278424-29278443 | None:intergenic | 30.0% | |
| ATTGTGTCAATCGCATATAA+TGG | + | chr5.3:29278928-29278947 | None:intergenic | 30.0% | |
| CATTGAGAAGAAAATCAAGA+AGG | + | chr5.3:29278221-29278240 | None:intergenic | 30.0% | |
| GAACAATGTCTTTCATCAAT+TGG | - | chr5.3:29278114-29278133 | MS.gene045630:intron | 30.0% | |
| GATACGCATTTAATACAAAG+TGG | - | chr5.3:29278834-29278853 | MS.gene045630:CDS | 30.0% | |
| TTGAGAAGAAAATCAAGAAG+GGG | + | chr5.3:29278219-29278238 | None:intergenic | 30.0% | |
| TTTGTATTAAATGCGTATCG+CGG | + | chr5.3:29278833-29278852 | None:intergenic | 30.0% | |
| ! | CCTAAAGTTGAGTTTTTGAT+GGG | - | chr5.3:29278429-29278448 | MS.gene045630:intron | 30.0% |
| ! | GACATTGTTCTACAGATTTT+AGG | + | chr5.3:29278104-29278123 | None:intergenic | 30.0% |
| ! | TCTTGATTTTCTTCTCAATG+AGG | - | chr5.3:29278221-29278240 | MS.gene045630:intron | 30.0% |
| !! | GAAATTTGAGTTTTTCGTGA+AGG | - | chr5.3:29278539-29278558 | MS.gene045630:CDS | 30.0% |
| !! | GATTTTTCAACATCATGGTA+AGG | + | chr5.3:29278255-29278274 | None:intergenic | 30.0% |
| !! | GGTTTACTTTGAGTTTTTCA+AGG | + | chr5.3:29278029-29278048 | None:intergenic | 30.0% |
| !! | TTGGTGTTGTTATCAAATAG+TGG | - | chr5.3:29278768-29278787 | MS.gene045630:CDS | 30.0% |
| !! | TTTGTTTGAAGGCTTTTTCT+GGG | + | chr5.3:29278050-29278069 | None:intergenic | 30.0% |
| !! | TTTTGTTTGAAGGCTTTTTC+TGG | + | chr5.3:29278051-29278070 | None:intergenic | 30.0% |
| !!! | AAGATTAGGGTTTTGTTTGA+AGG | + | chr5.3:29278061-29278080 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGAGGGAATTA+GGG | - | chr5.3:29278334-29278353 | MS.gene045630:intron | 30.0% |
| ACACTAAAAGTCAATAACCC+AGG | + | chr5.3:29278501-29278520 | None:intergenic | 35.0% | |
| ACACTACTAACCAACAATCT+AGG | + | chr5.3:29278291-29278310 | None:intergenic | 35.0% | |
| ATTATAGGTTGCTCGAATTG+CGG | - | chr5.3:29279039-29279058 | MS.gene045630:CDS | 35.0% | |
| CCCATCAAAAACTCAACTTT+AGG | + | chr5.3:29278432-29278451 | None:intergenic | 35.0% | |
| GAAAATTAAGCCACGATTTG+GGG | + | chr5.3:29277989-29278008 | None:intergenic | 35.0% | |
| GCTATAGCAATATAGCATAG+CGG | - | chr5.3:29278880-29278899 | MS.gene045630:CDS | 35.0% | |
| GGAAAATTAAGCCACGATTT+GGG | + | chr5.3:29277990-29278009 | None:intergenic | 35.0% | |
| TATCAAGAATTCGACCCATT+TGG | + | chr5.3:29278152-29278171 | None:intergenic | 35.0% | |
| TGAGAAGAAAATCAAGAAGG+GGG | + | chr5.3:29278218-29278237 | None:intergenic | 35.0% | |
| TGATGGGAAAATTGAGAGAT+TGG | + | chr5.3:29277952-29277971 | None:intergenic | 35.0% | |
| TTCCTTTGCAGATTAGTGAT+GGG | - | chr5.3:29279276-29279295 | MS.gene045630:CDS | 35.0% | |
| ! | ATTCTAGGTTGCTTGATTTG+CGG | - | chr5.3:29278715-29278734 | MS.gene045630:CDS | 35.0% |
| ! | GCCTAAAGTTGAGTTTTTGA+TGG | - | chr5.3:29278428-29278447 | MS.gene045630:intron | 35.0% |
| ! | TCGCATATAATGGAAAACAG+CGG | + | chr5.3:29278918-29278937 | None:intergenic | 35.0% |
| ! | TTAAGAAGGGTTTTGCGATT+GGG | + | chr5.3:29277885-29277904 | None:intergenic | 35.0% |
| ! | TTTAAGAAGGGTTTTGCGAT+TGG | + | chr5.3:29277886-29277905 | None:intergenic | 35.0% |
| ! | TTTTTCGTGAAGGAGATGAA+TGG | - | chr5.3:29278549-29278568 | MS.gene045630:CDS | 35.0% |
| !! | TTTTGAGAGAAGAAGGGTTT+GGG | + | chr5.3:29277862-29277881 | None:intergenic | 35.0% |
| !!! | ACAGATTTTAGGGTTCTTAG+AGG | + | chr5.3:29278093-29278112 | None:intergenic | 35.0% |
| !!! | AGTTGAGTTTTTGATGGGTT+TGG | - | chr5.3:29278434-29278453 | MS.gene045630:intron | 35.0% |
| !!! | ATTGGGTTTTGAGAGAAGAA+GGG | + | chr5.3:29277868-29277887 | None:intergenic | 35.0% |
| !!! | CTGTGTTTTTTGAGGGAATT+AGG | - | chr5.3:29278333-29278352 | MS.gene045630:intron | 35.0% |
| !!! | GTTGAGTTTTTGATGGGTTT+GGG | - | chr5.3:29278435-29278454 | MS.gene045630:intron | 35.0% |
| !!! | TGGGTTATTGACTTTTAGTG+TGG | - | chr5.3:29278500-29278519 | MS.gene045630:CDS | 35.0% |
| !!! | TTGAGTTTTTGATGGGTTTG+GGG | - | chr5.3:29278436-29278455 | MS.gene045630:intron | 35.0% |
| AAACCAAAAGCAATGTCGTC+TGG | + | chr5.3:29278386-29278405 | None:intergenic | 40.0% | |
| AAGGAACTTGAGGGAAGATA+AGG | - | chr5.3:29278741-29278760 | MS.gene045630:CDS | 40.0% | |
| ACCAAAGTGAAATGCTAACC+AGG | + | chr5.3:29279215-29279234 | None:intergenic | 40.0% | |
| ACCTGGTTAGCATTTCACTT+TGG | - | chr5.3:29279211-29279230 | MS.gene045630:CDS | 40.0% | |
| AGAGGACAAGAACGAAGATT+AGG | + | chr5.3:29278075-29278094 | None:intergenic | 40.0% | |
| AGGGCTAAATCATAGATACC+TGG | - | chr5.3:29279194-29279213 | MS.gene045630:CDS | 40.0% | |
| ATATTGCTATAGCGCTGCTA+AGG | + | chr5.3:29278873-29278892 | None:intergenic | 40.0% | |
| ATCCTTTGCAAGAGATGTTG+CGG | - | chr5.3:29278998-29279017 | MS.gene045630:CDS | 40.0% | |
| CGGAAAATTAAGCCACGATT+TGG | + | chr5.3:29277991-29278010 | None:intergenic | 40.0% | |
| CTTCCTTTGCAGATTAGTGA+TGG | - | chr5.3:29279275-29279294 | MS.gene045630:CDS | 40.0% | |
| GAGGACAAGAACGAAGATTA+GGG | + | chr5.3:29278074-29278093 | None:intergenic | 40.0% | |
| TAGCATTTCACTTTGGTACG+TGG | - | chr5.3:29279218-29279237 | MS.gene045630:CDS | 40.0% | |
| TCCTTTGCAGATTAGTGATG+GGG | - | chr5.3:29279277-29279296 | MS.gene045630:CDS | 40.0% | |
| TGAGGGAAGATAAGGTTAGT+TGG | - | chr5.3:29278749-29278768 | MS.gene045630:CDS | 40.0% | |
| TTGAGGGAATTAGGGTTTGT+TGG | - | chr5.3:29278342-29278361 | MS.gene045630:intron | 40.0% | |
| TTGCGGTTAAAGGAACTTGA+GGG | - | chr5.3:29278732-29278751 | MS.gene045630:CDS | 40.0% | |
| TTTCACTTTGGTACGTGGTA+CGG | - | chr5.3:29279223-29279242 | MS.gene045630:CDS | 40.0% | |
| TTTGAGAGAAGAAGGGTTTG+GGG | + | chr5.3:29277861-29277880 | None:intergenic | 40.0% | |
| TTTGCGGTTAAAGGAACTTG+AGG | - | chr5.3:29278731-29278750 | MS.gene045630:CDS | 40.0% | |
| ! | GGTAGTGGTTGTTGATTGAT+GGG | + | chr5.3:29277968-29277987 | None:intergenic | 40.0% |
| ! | GTGATGGAGGGTTTGATTAT+AGG | - | chr5.3:29279024-29279043 | MS.gene045630:CDS | 40.0% |
| ! | TGAGGGAATTAGGGTTTGTT+GGG | - | chr5.3:29278343-29278362 | MS.gene045630:intron | 40.0% |
| !! | GTTGCTTGATTTGCGGTTAA+AGG | - | chr5.3:29278722-29278741 | MS.gene045630:CDS | 40.0% |
| !!! | ACCTGCTCTGTGTTTTTTGA+GGG | - | chr5.3:29278326-29278345 | MS.gene045630:intron | 40.0% |
| !!! | GATTGGGTTTTGAGAGAAGA+AGG | + | chr5.3:29277869-29277888 | None:intergenic | 40.0% |
| !!! | GTGATGGTGGTTTTGATTCT+AGG | - | chr5.3:29278700-29278719 | MS.gene045630:CDS | 40.0% |
| !!! | GTTTTGAGAGAAGAAGGGTT+TGG | + | chr5.3:29277863-29277882 | None:intergenic | 40.0% |
| !!! | TTTCTTTTAGCTTGGAAGGG+AGG | - | chr5.3:29278607-29278626 | MS.gene045630:CDS | 40.0% |
| AACCGCAACATCTCTTGCAA+AGG | + | chr5.3:29279003-29279022 | None:intergenic | 45.0% | |
| AAGGAGCTTGAGGGAAGATA+AGG | - | chr5.3:29279065-29279084 | MS.gene045630:CDS | 45.0% | |
| ACCTGCAACATCTCTTGCAA+AGG | + | chr5.3:29278678-29278697 | None:intergenic | 45.0% | |
| AGAGATGTTGCGGTTAGTGA+TGG | - | chr5.3:29279008-29279027 | MS.gene045630:CDS | 45.0% | |
| AGGAGCTTGAGGGAAGATAA+GGG | - | chr5.3:29279066-29279085 | MS.gene045630:CDS | 45.0% | |
| AGGGGGTAAATATCACTGTG+TGG | + | chr5.3:29278201-29278220 | None:intergenic | 45.0% | |
| AGGTTTCGAACATGGTTGTG+AGG | - | chr5.3:29278472-29278491 | MS.gene045630:CDS | 45.0% | |
| ATGTTGCAGGTTAGTGATGG+TGG | - | chr5.3:29278687-29278706 | MS.gene045630:CDS | 45.0% | |
| GAGATGTTGCAGGTTAGTGA+TGG | - | chr5.3:29278684-29278703 | MS.gene045630:CDS | 45.0% | |
| GGCATACACAGAAGCCAAAT+GGG | - | chr5.3:29278135-29278154 | MS.gene045630:intron | 45.0% | |
| TCCCCATCACTAATCTGCAA+AGG | + | chr5.3:29279281-29279300 | None:intergenic | 45.0% | |
| TCCCTCAAAAAACACAGAGC+AGG | + | chr5.3:29278330-29278349 | None:intergenic | 45.0% | |
| TCCTTTGCAAGAGATGTTGC+AGG | - | chr5.3:29278674-29278693 | MS.gene045630:CDS | 45.0% | |
| TGGCATACACAGAAGCCAAA+TGG | - | chr5.3:29278134-29278153 | MS.gene045630:intron | 45.0% | |
| TTCACTTTGGTACGTGGTAC+GGG | - | chr5.3:29279224-29279243 | MS.gene045630:CDS | 45.0% | |
| ! | ATGTTGCGGTTAGTGATGGA+GGG | - | chr5.3:29279012-29279031 | MS.gene045630:CDS | 45.0% |
| ! | GGGTAGTGGTTGTTGATTGA+TGG | + | chr5.3:29277969-29277988 | None:intergenic | 45.0% |
| ! | GTGATGTTGCTGAGTTGAAG+AGG | - | chr5.3:29278571-29278590 | MS.gene045630:CDS | 45.0% |
| !!! | GACCTGCTCTGTGTTTTTTG+AGG | - | chr5.3:29278325-29278344 | MS.gene045630:intron | 45.0% |
| !!! | GCTTTTGGTTTCGAGTGTTG+AGG | - | chr5.3:29278395-29278414 | MS.gene045630:intron | 45.0% |
| AACATGGTTGTGAGGTCACC+TGG | - | chr5.3:29278480-29278499 | MS.gene045630:CDS | 50.0% | |
| ACAACCACTACCCCAAATCG+TGG | - | chr5.3:29277976-29277995 | MS.gene045630:intron | 50.0% | |
| ACATGGTTGTGAGGTCACCT+GGG | - | chr5.3:29278481-29278500 | MS.gene045630:CDS | 50.0% | |
| ACGTGTGGAGGTTTCGAACA+TGG | - | chr5.3:29278464-29278483 | MS.gene045630:CDS | 50.0% | |
| ATTGCGGTGAAAGGAGCTTG+AGG | - | chr5.3:29279055-29279074 | MS.gene045630:CDS | 50.0% | |
| CTTGCGGTGTCCTAGATTGT+TGG | - | chr5.3:29278278-29278297 | MS.gene045630:intron | 50.0% | |
| GATGTTGCGGTTAGTGATGG+AGG | - | chr5.3:29279011-29279030 | MS.gene045630:CDS | 50.0% | |
| GGACTGTGGTACACTCTGTT+TGG | - | chr5.3:29279245-29279264 | MS.gene045630:CDS | 50.0% | |
| GGTTCACACGTGAGAAGTTC+AGG | + | chr5.3:29278180-29278199 | None:intergenic | 50.0% | |
| GTTGCTCGAATTGCGGTGAA+AGG | - | chr5.3:29279046-29279065 | MS.gene045630:CDS | 50.0% | |
| TGGAAGGGAGGATTAAGCCA+CGG | - | chr5.3:29278619-29278638 | MS.gene045630:CDS | 50.0% | |
| TTGCGGTGAAAGGAGCTTGA+GGG | - | chr5.3:29279056-29279075 | MS.gene045630:CDS | 50.0% | |
| ! | GTGCCAGACGACATTGCTTT+TGG | - | chr5.3:29278380-29278399 | MS.gene045630:intron | 50.0% |
| ! | TAAGCCACGATTTGGGGTAG+TGG | + | chr5.3:29277983-29278002 | None:intergenic | 50.0% |
| ! | TTTGGGGTTCACACGTGTGG+AGG | - | chr5.3:29278452-29278471 | MS.gene045630:intron | 55.0% |
| CGTCTGGCACGTGAGAGAGT+GGG | + | chr5.3:29278370-29278389 | None:intergenic | 60.0% | |
| GTCTGGCACGTGAGAGAGTG+GGG | + | chr5.3:29278369-29278388 | None:intergenic | 60.0% | |
| TAAGCCACGGCACGCGATGT+TGG | - | chr5.3:29278632-29278651 | MS.gene045630:CDS | 60.0% | |
| TCGTCTGGCACGTGAGAGAG+TGG | + | chr5.3:29278371-29278390 | None:intergenic | 60.0% | |
| TGGTACGTGGTACGGGACTG+TGG | - | chr5.3:29279231-29279250 | MS.gene045630:CDS | 60.0% | |
| ! | CACGGCACGCGATGTTGGTT+CGG | - | chr5.3:29278637-29278656 | MS.gene045630:CDS | 60.0% |
| ! | GGGTTTGGGGTTCACACGTG+TGG | - | chr5.3:29278449-29278468 | MS.gene045630:intron | 60.0% |
| !! | CACGCGATGTTGGTTCGGCT+TGG | - | chr5.3:29278642-29278661 | MS.gene045630:CDS | 60.0% |
| CGAACCAACATCGCGTGCCG+TGG | + | chr5.3:29278639-29278658 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 29277838 | 29279310 | 29277838 | ID=MS.gene045630 |
| chr5.3 | mRNA | 29277838 | 29279310 | 29277838 | ID=MS.gene045630.t1;Parent=MS.gene045630 |
| chr5.3 | exon | 29278453 | 29279310 | 29278453 | ID=MS.gene045630.t1.exon1;Parent=MS.gene045630.t1 |
| chr5.3 | CDS | 29278453 | 29279310 | 29278453 | ID=cds.MS.gene045630.t1;Parent=MS.gene045630.t1 |
| chr5.3 | exon | 29277838 | 29277861 | 29277838 | ID=MS.gene045630.t1.exon2;Parent=MS.gene045630.t1 |
| chr5.3 | CDS | 29277838 | 29277861 | 29277838 | ID=cds.MS.gene045630.t1;Parent=MS.gene045630.t1 |
| Gene Sequence |
| Protein sequence |
