AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045670.t1 MTR_6g477900 35.338 133 72 6 4 129 6 131 1.12e-15 72.0
MS.gene045670.t1 MTR_7g105170 29.252 147 95 4 1 140 1 145 4.49e-15 70.9
MS.gene045670.t1 MTR_7g100990 36.296 135 68 7 4 129 11 136 5.27e-15 71.2
MS.gene045670.t1 MTR_1g097300 32.432 148 84 5 6 145 21 160 1.01e-13 68.2
MS.gene045670.t1 MTR_8g023840 33.577 137 71 7 4 129 11 138 1.51e-13 67.4
MS.gene045670.t1 MTR_1g008740 34.074 135 76 6 2 129 25 153 1.55e-13 67.4
MS.gene045670.t1 MTR_1g008740 34.074 135 76 6 2 129 11 139 1.83e-13 67.0
MS.gene045670.t1 MTR_5g012080 28.105 153 94 4 4 147 7 152 3.44e-13 66.2
MS.gene045670.t1 MTR_6g011860 32.061 131 78 4 4 129 15 139 8.82e-13 65.5
MS.gene045670.t1 MTR_4g098630 34.815 135 73 8 4 129 6 134 1.15e-12 64.7
MS.gene045670.t1 MTR_8g023900 30.178 169 100 6 7 165 196 356 1.31e-12 65.1
MS.gene045670.t1 MTR_8g023900 32.857 140 74 7 4 132 12 142 1.37e-12 65.1
MS.gene045670.t1 MTR_5g021710 31.579 133 78 5 4 129 8 134 1.50e-12 64.7
MS.gene045670.t1 MTR_8g094580 31.618 136 78 5 4 133 7 133 2.53e-12 63.5
MS.gene045670.t1 MTR_8g023930 29.825 171 106 5 2 164 22 186 3.98e-12 63.5
MS.gene045670.t1 MTR_8g023860 30.935 139 78 6 1 129 9 139 4.00e-12 63.5
MS.gene045670.t1 MTR_4g035590 32.847 137 71 8 4 129 8 134 5.76e-12 62.8
MS.gene045670.t1 MTR_4g036030 31.818 132 79 4 4 129 7 133 5.92e-12 62.8
MS.gene045670.t1 MTR_8g467490 32.593 135 77 6 2 129 12 139 8.64e-12 62.4
MS.gene045670.t1 MTR_3g109340 32.593 135 77 6 2 129 20 147 1.23e-11 62.0
MS.gene045670.t1 MTR_3g109340 32.593 135 77 6 2 129 20 147 1.27e-11 62.0
MS.gene045670.t1 MTR_7g085220 32.414 145 77 7 4 134 8 145 1.31e-11 62.0
MS.gene045670.t1 MTR_8g059170 33.835 133 72 6 4 129 14 137 1.59e-11 61.6
MS.gene045670.t1 MTR_3g093040 31.387 137 72 8 4 129 108 233 1.88e-11 61.2
MS.gene045670.t1 MTR_5g014300 29.655 145 83 6 4 135 6 144 3.45e-11 60.5
MS.gene045670.t1 MTR_2157s0010 28.859 149 85 6 4 141 8 146 4.45e-11 60.1
MS.gene045670.t1 MTR_3g093050 29.496 139 78 7 1 129 19 147 5.54e-11 60.5
MS.gene045670.t1 MTR_2g079990 31.081 148 86 6 4 144 16 154 6.28e-11 60.1
MS.gene045670.t1 MTR_3g093050 29.496 139 78 7 1 129 19 147 6.33e-11 60.1
MS.gene045670.t1 MTR_2g079990 33.083 133 73 6 4 129 16 139 7.04e-11 59.7
MS.gene045670.t1 MTR_5g090970 28.931 159 97 5 2 152 16 166 9.35e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045670.t1 AT2G27300 30.657 137 86 4 4 136 14 145 1.15e-14 70.5
MS.gene045670.t1 AT1G61110 34.848 132 73 4 4 129 16 140 1.20e-14 70.5
MS.gene045670.t1 AT3G44290 31.387 137 75 6 6 133 16 142 2.92e-14 68.2
MS.gene045670.t1 AT2G24430 34.815 135 74 6 2 129 14 141 3.45e-14 68.9
MS.gene045670.t1 AT2G24430 34.815 135 74 6 2 129 14 141 3.45e-14 68.9
MS.gene045670.t1 AT5G46590 32.331 133 77 5 4 129 6 132 4.43e-14 68.6
MS.gene045670.t1 AT5G46590 32.331 133 77 5 4 129 6 132 5.42e-14 68.2
MS.gene045670.t1 AT4G17980 34.328 134 74 6 4 129 6 133 5.53e-14 68.2
MS.gene045670.t1 AT4G17980 34.328 134 74 6 4 129 6 133 6.23e-14 68.2
MS.gene045670.t1 AT3G44290 29.851 134 81 5 6 133 16 142 1.23e-13 67.8
MS.gene045670.t1 AT5G22290 32.331 133 71 6 6 129 23 145 1.41e-13 67.4
MS.gene045670.t1 AT1G54330 31.250 144 87 5 4 141 6 143 2.63e-13 66.6
MS.gene045670.t1 AT4G27410 30.409 171 93 7 4 157 14 175 2.67e-13 66.6
MS.gene045670.t1 AT1G32510 32.653 147 76 7 3 134 5 143 2.71e-13 66.2
MS.gene045670.t1 AT1G65910 34.328 134 72 7 4 129 6 131 3.45e-13 66.6
MS.gene045670.t1 AT1G26870 34.559 136 73 6 2 129 14 141 4.24e-13 66.2
MS.gene045670.t1 AT3G10480 32.450 151 88 6 4 147 27 170 4.58e-13 66.2
MS.gene045670.t1 AT5G39820 33.588 131 73 5 6 129 22 145 1.07e-12 65.1
MS.gene045670.t1 AT1G76420 27.647 170 103 6 4 163 22 181 3.29e-12 63.5
MS.gene045670.t1 AT2G18060 30.827 133 79 5 4 129 9 135 3.33e-12 63.5
MS.gene045670.t1 AT2G18060 30.827 133 79 5 4 129 9 135 3.33e-12 63.5
MS.gene045670.t1 AT1G71930 29.167 144 91 4 4 141 9 147 3.39e-12 63.5
MS.gene045670.t1 AT1G71930 29.167 144 91 4 4 141 9 147 3.39e-12 63.5
MS.gene045670.t1 AT3G29035 32.576 132 75 5 4 129 24 147 3.72e-12 63.5
MS.gene045670.t1 AT1G52890 31.757 148 85 6 4 144 14 152 4.55e-12 63.2
MS.gene045670.t1 AT3G15500 31.973 147 86 7 4 144 14 152 4.97e-12 63.2
MS.gene045670.t1 AT5G62380 32.877 146 80 6 1 135 4 142 7.00e-12 62.8
MS.gene045670.t1 AT5G62380 32.877 146 80 6 1 135 4 142 7.00e-12 62.8
MS.gene045670.t1 AT4G10350 31.333 150 82 8 4 141 9 149 7.86e-12 62.4
MS.gene045670.t1 AT1G34190 28.333 180 110 6 2 168 14 187 1.11e-11 62.4
MS.gene045670.t1 AT4G27410 28.108 185 96 7 4 157 14 192 2.19e-11 61.2
MS.gene045670.t1 AT1G33060 32.857 140 72 7 1 129 21 149 2.22e-11 61.6
MS.gene045670.t1 AT1G33060 32.857 140 72 7 1 129 21 149 2.35e-11 61.6
MS.gene045670.t1 AT2G33480 30.323 155 88 7 4 150 15 157 3.21e-11 60.5
MS.gene045670.t1 AT5G39610 31.061 132 77 5 4 129 20 143 3.57e-11 60.5
MS.gene045670.t1 AT3G18400 30.597 134 79 6 2 129 3 128 3.68e-11 60.5
MS.gene045670.t1 AT2G43000 32.308 130 74 5 6 129 20 141 3.90e-11 60.1
MS.gene045670.t1 AT5G64530 33.594 128 71 5 4 130 3 117 5.24e-11 58.2
MS.gene045670.t1 AT3G04070 26.404 178 98 8 4 156 10 179 6.00e-11 60.1
MS.gene045670.t1 AT5G64530 33.594 128 71 5 4 130 3 117 8.25e-11 58.2
MS.gene045670.t1 AT1G32870 31.298 131 80 5 4 130 10 134 8.27e-11 59.7
MS.gene045670.t1 AT1G32870 31.298 131 80 5 4 130 10 134 9.21e-11 59.7
MS.gene045670.t1 AT1G32870 31.298 131 80 5 4 130 46 170 9.35e-11 59.7

Find 37 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTTAAGCTTGCAATTA+TGG 0.167377 4.3:-64334349 MS.gene045670:CDS
CAATGGTTCTGACCTGATTA+AGG 0.258535 4.3:-64335907 MS.gene045670:CDS
CAGAGGAGGCATTGTAAGAT+TGG 0.351545 4.3:-64335780 MS.gene045670:CDS
GGCATTGTAAGATTGGGTTT+TGG 0.353732 4.3:-64335773 MS.gene045670:CDS
ATAAGTTCAGCTCCTTAATC+AGG 0.404146 4.3:+64335895 None:intergenic
GAAGAGGTTCAGAATTTCAA+TGG 0.424440 4.3:-64335924 MS.gene045670:CDS
CCTCCTCTGCTCATCAACTT+TGG 0.447718 4.3:+64335794 None:intergenic
AGAGGAGGCATTGTAAGATT+GGG 0.450614 4.3:-64335779 MS.gene045670:CDS
TGGAGTTGATAACGTGGTTG+TGG 0.453423 4.3:-64335721 MS.gene045670:CDS
GAATTCCTTCCACCTGGTGT+TGG 0.454396 4.3:-64336002 MS.gene045670:CDS
GCAATTCTAACGGATCATAC+TGG 0.483561 4.3:+64335871 None:intergenic
GTGAAGCAGTAAAATTCCCT+TGG 0.511128 4.3:+64335819 None:intergenic
GGAGTTGATAACGTGGTTGT+GGG 0.517524 4.3:-64335720 MS.gene045670:CDS
GGAGTTGTTCGAGACATTTG+TGG 0.527780 4.3:-64335741 MS.gene045670:CDS
ATTGCAAGCTTAAGTTGCTC+CGG 0.538652 4.3:+64334354 None:intergenic
AGTAAAATTCCCTTGGGTGA+CGG 0.539767 4.3:+64335826 None:intergenic
TAACAAGGAGCTCATCTGAA+GGG 0.545729 4.3:+64335973 None:intergenic
AGGACGCGATCAAAACTAGC+TGG 0.546737 4.3:-64335656 MS.gene045670:CDS
CCACATGGAAGCTATGACGC+CGG 0.546830 4.3:-64334373 MS.gene045670:CDS
TGAAGCAGTAAAATTCCCTT+GGG 0.559532 4.3:+64335820 None:intergenic
GAAGGGGCGAAGCCAACACC+AGG 0.562826 4.3:+64335990 None:intergenic
CGAAGCCAACACCAGGTGGA+AGG 0.569669 4.3:+64335997 None:intergenic
CTATATAGGAAATTCCCCTC+AGG 0.570864 4.3:-64335676 MS.gene045670:CDS
CCAAAGTTGATGAGCAGAGG+AGG 0.574327 4.3:-64335794 MS.gene045670:CDS
CACTCAGGTTAACAACCCTC+AGG 0.585811 4.3:-64335619 MS.gene045670:intron
CTAACAAGGAGCTCATCTGA+AGG 0.597005 4.3:+64335972 None:intergenic
GCAATGGAATTCCTTCCACC+TGG 0.603855 4.3:-64336008 MS.gene045670:CDS
GGACTAAGAGGCAATTCTAA+CGG 0.613861 4.3:+64335861 None:intergenic
TGGCAAGGTAGTAGCTAACA+AGG 0.615826 4.3:+64335958 None:intergenic
AACAAGGAGCTCATCTGAAG+GGG 0.618835 4.3:+64335974 None:intergenic
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 4.3:-64335797 MS.gene045670:CDS
CCGGCGTCATAGCTTCCATG+TGG 0.629672 4.3:+64334373 None:intergenic
TGACTATGTTGTGTCCCACA+TGG 0.631632 4.3:-64334388 MS.gene045670:CDS
GGGGCGAAGCCAACACCAGG+TGG 0.632420 4.3:+64335993 None:intergenic
CGGCGTCATAGCTTCCATGT+GGG 0.637767 4.3:+64334374 None:intergenic
GACTATGTACGAGTACACTC+AGG 0.643748 4.3:-64335634 MS.gene045670:CDS
CATTTGTGGAGTTGATAACG+TGG 0.688917 4.3:-64335727 MS.gene045670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAAGAAAAATAAAA+AGG + chr4.3:64335755-64335774 None:intergenic 10.0%
!! TCAAAAAATATGTTTAATTA+CGG - chr4.3:64335504-64335523 MS.gene045670:intron 10.0%
!! TTTAATATAAATAATTATGC+AGG - chr4.3:64334826-64334845 MS.gene045670:intron 10.0%
!!! AATGAAATATATTTTACCTA+AGG + chr4.3:64335064-64335083 None:intergenic 15.0%
!!! ATTTTTCTTTAAGTTTTTTG+TGG - chr4.3:64335759-64335778 MS.gene045670:CDS 15.0%
!!! CATTTTTTCATGTAATTTTA+TGG - chr4.3:64335845-64335864 MS.gene045670:CDS 15.0%
!! ATATGTATTTCACTTTCTAT+TGG - chr4.3:64335187-64335206 MS.gene045670:intron 20.0%
!! CATGAAAATTATTGATATTG+TGG + chr4.3:64335250-64335269 None:intergenic 20.0%
!! TATTCAAAACCTTTATGTAT+TGG - chr4.3:64335381-64335400 MS.gene045670:intron 20.0%
!! TCGATGATTAATTTATGTAT+TGG - chr4.3:64334785-64334804 MS.gene045670:intron 20.0%
!!! CATATTTTTTGATACAATTG+TGG + chr4.3:64335496-64335515 None:intergenic 20.0%
!!! GTTTTGAATAACAACAAATA+TGG + chr4.3:64335371-64335390 None:intergenic 20.0%
!!! TCTCTTTTTATGTTCTATAT+AGG - chr4.3:64334647-64334666 MS.gene045670:intron 20.0%
!!! TTTTGTGGTATTTTTTTTTG+TGG - chr4.3:64335774-64335793 MS.gene045670:CDS 20.0%
!!! TTTTTCATGTAATTTTATGG+TGG - chr4.3:64335848-64335867 MS.gene045670:CDS 20.0%
! AATCAATTGAGTTTGTAAAG+AGG + chr4.3:64335568-64335587 None:intergenic 25.0%
! CAAAAACTACCAATACATAA+AGG + chr4.3:64335393-64335412 None:intergenic 25.0%
! GTTTGATATTGATGTTTATC+AGG - chr4.3:64335907-64335926 MS.gene045670:CDS 25.0%
! TCGATGAAATAATGAACATA+TGG + chr4.3:64334769-64334788 None:intergenic 25.0%
! TTAGTGTGAGATTTAAAAGT+TGG + chr4.3:64335282-64335301 None:intergenic 25.0%
! TTTAAATCTCACACTAATTG+TGG - chr4.3:64335285-64335304 MS.gene045670:intron 25.0%
!! AATATATTTTACCTAAGGAG+TGG + chr4.3:64335059-64335078 None:intergenic 25.0%
!! TTAATCTGTTACATGTTTTG+AGG + chr4.3:64335691-64335710 None:intergenic 25.0%
!!! TTATGTATTGGTAGTTTTTG+TGG - chr4.3:64335393-64335412 MS.gene045670:intron 25.0%
AATAAAAAGGACATGTTTCG+AGG + chr4.3:64335742-64335761 None:intergenic 30.0%
ACAATTGTGGATGTAGAATT+CGG + chr4.3:64335483-64335502 None:intergenic 30.0%
CATAAATAATCCAAACGCAA+TGG + chr4.3:64335442-64335461 None:intergenic 30.0%
! AACTCAATTGATTCATGTGA+TGG - chr4.3:64335575-64335594 MS.gene045670:intron 30.0%
!! AAGAAAAATGATGGACTAAG+AGG + chr4.3:64334491-64334510 None:intergenic 30.0%
!!! AACCTCTTCATTGTTTTTGT+TGG + chr4.3:64334402-64334421 None:intergenic 30.0%
AGAGGATCAACAACATTAAC+TGG + chr4.3:64335550-64335569 None:intergenic 35.0%
ATAAGTTCAGCTCCTTAATC+AGG + chr4.3:64334445-64334464 None:intergenic 35.0%
ATATTGTGGCTCACATATGA+TGG + chr4.3:64335236-64335255 None:intergenic 35.0%
ATGGATCTTGACTCTGAATT+TGG - chr4.3:64334890-64334909 MS.gene045670:intron 35.0%
GAAGAGGTTCAGAATTTCAA+TGG - chr4.3:64334413-64334432 MS.gene045670:intron 35.0%
GCAACTTAAGCTTGCAATTA+TGG - chr4.3:64335988-64336007 MS.gene045670:CDS 35.0%
TGAAGCAGTAAAATTCCCTT+GGG + chr4.3:64334520-64334539 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG - chr4.3:64334397-64334416 MS.gene045670:CDS 35.0%
TGGATGTAGAATTCGGTAAT+TGG + chr4.3:64335476-64335495 None:intergenic 35.0%
! CTCGATATCAATTTTCGCAT+CGG - chr4.3:64335091-64335110 MS.gene045670:intron 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG + chr4.3:64334397-64334416 None:intergenic 35.0%
AAAACGCGGCAAACAACAAA+AGG + chr4.3:64334854-64334873 None:intergenic 40.0%
AAGGAACTCAGCAACTTAAG+GGG - chr4.3:64334975-64334994 MS.gene045670:intron 40.0%
ACCTTCATCGACATCAGAAA+AGG + chr4.3:64334918-64334937 None:intergenic 40.0%
AGTAAAATTCCCTTGGGTGA+CGG + chr4.3:64334514-64334533 None:intergenic 40.0%
CTATATAGGAAATTCCCCTC+AGG - chr4.3:64334661-64334680 MS.gene045670:intron 40.0%
GAAGGAACTCAGCAACTTAA+GGG - chr4.3:64334974-64334993 MS.gene045670:intron 40.0%
GGACTAAGAGGCAATTCTAA+CGG + chr4.3:64334479-64334498 None:intergenic 40.0%
GTGAAGCAGTAAAATTCCCT+TGG + chr4.3:64334521-64334540 None:intergenic 40.0%
TAACAAGGAGCTCATCTGAA+GGG + chr4.3:64334367-64334386 None:intergenic 40.0%
TGAAGGAACTCAGCAACTTA+AGG - chr4.3:64334973-64334992 MS.gene045670:intron 40.0%
TTCCCAAATGACATACCTGA+GGG + chr4.3:64334736-64334755 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG + chr4.3:64334737-64334756 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG - chr4.3:64334731-64334750 MS.gene045670:intron 40.0%
! ATTGCAAGCTTAAGTTGCTC+CGG + chr4.3:64335986-64336005 None:intergenic 40.0%
! ATTTTTCTTCCGTCACCCAA+GGG - chr4.3:64334502-64334521 MS.gene045670:intron 40.0%
! GCAATTCTAACGGATCATAC+TGG + chr4.3:64334469-64334488 None:intergenic 40.0%
! GGCATTGTAAGATTGGGTTT+TGG - chr4.3:64334564-64334583 MS.gene045670:intron 40.0%
!! AGAGGAGGCATTGTAAGATT+GGG - chr4.3:64334558-64334577 MS.gene045670:intron 40.0%
!! CAATGGTTCTGACCTGATTA+AGG - chr4.3:64334430-64334449 MS.gene045670:intron 40.0%
!! CATTTGTGGAGTTGATAACG+TGG - chr4.3:64334610-64334629 MS.gene045670:intron 40.0%
!!! ATTGGGTTTTGGATGCGTAA+GGG - chr4.3:64334575-64334594 MS.gene045670:intron 40.0%
AACAAGGAGCTCATCTGAAG+GGG + chr4.3:64334366-64334385 None:intergenic 45.0%
AGGAACTCAGCAACTTAAGG+GGG - chr4.3:64334976-64334995 MS.gene045670:intron 45.0%
AGGACATGTTTCGAGGAATC+TGG + chr4.3:64335735-64335754 None:intergenic 45.0%
AGTCAAGATCCATCCCTCTA+GGG + chr4.3:64334883-64334902 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG - chr4.3:64334730-64334749 MS.gene045670:intron 45.0%
CCAAACGCAATGGAGCTATT+TGG + chr4.3:64335432-64335451 None:intergenic 45.0%
CCAAATAGCTCCATTGCGTT+TGG - chr4.3:64335429-64335448 MS.gene045670:intron 45.0%
CTAACAAGGAGCTCATCTGA+AGG + chr4.3:64334368-64334387 None:intergenic 45.0%
GACTATGTACGAGTACACTC+AGG - chr4.3:64334703-64334722 MS.gene045670:intron 45.0%
GGAGTTGTTCGAGACATTTG+TGG - chr4.3:64334596-64334615 MS.gene045670:intron 45.0%
TGACTATGTTGTGTCCCACA+TGG - chr4.3:64335949-64335968 MS.gene045670:CDS 45.0%
TGGCAAGGTAGTAGCTAACA+AGG + chr4.3:64334382-64334401 None:intergenic 45.0%
TTCGATGACAAGGCGAATGA+AGG - chr4.3:64334956-64334975 MS.gene045670:intron 45.0%
TTGTGGCTCACATATGATGG+AGG + chr4.3:64335233-64335252 None:intergenic 45.0%
! CATTTTTCTTCCGTCACCCA+AGG - chr4.3:64334501-64334520 MS.gene045670:intron 45.0%
! GCCTTTTCTGATGTCGATGA+AGG - chr4.3:64334914-64334933 MS.gene045670:intron 45.0%
! TGATGACGACTTCGATGACA+AGG - chr4.3:64334946-64334965 MS.gene045670:intron 45.0%
!! ACTAGTTCTAGTGCTGAGCA+AGG - chr4.3:64335004-64335023 MS.gene045670:intron 45.0%
!! CAGAGGAGGCATTGTAAGAT+TGG - chr4.3:64334557-64334576 MS.gene045670:intron 45.0%
!! GGAGTTGATAACGTGGTTGT+GGG - chr4.3:64334617-64334636 MS.gene045670:intron 45.0%
!! GGGTGACGGAAGAAAAATGA+TGG + chr4.3:64334500-64334519 None:intergenic 45.0%
!! TGGAGTTGATAACGTGGTTG+TGG - chr4.3:64334616-64334635 MS.gene045670:intron 45.0%
!!! GATTGGGTTTTGGATGCGTA+AGG - chr4.3:64334574-64334593 MS.gene045670:intron 45.0%
!!! TAGTTTTGATCGCGTCCTGA+GGG + chr4.3:64334679-64334698 None:intergenic 45.0%
AGGACGCGATCAAAACTAGC+TGG - chr4.3:64334681-64334700 MS.gene045670:intron 50.0%
AGGCTATGCATCGCATTCCA+TGG - chr4.3:64335024-64335043 MS.gene045670:intron 50.0%
CACTCAGGTTAACAACCCTC+AGG - chr4.3:64334718-64334737 MS.gene045670:intron 50.0%
CCTCCTCTGCTCATCAACTT+TGG + chr4.3:64334546-64334565 None:intergenic 50.0%
GAATTCCTTCCACCTGGTGT+TGG - chr4.3:64334335-64334354 MS.gene045670:CDS 50.0%
GAGTCAAGATCCATCCCTCT+AGG + chr4.3:64334884-64334903 None:intergenic 50.0%
!! AGTTTTGATCGCGTCCTGAG+GGG + chr4.3:64334678-64334697 None:intergenic 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG - chr4.3:64334543-64334562 MS.gene045670:intron 50.0%
!! CTCTAGGGCAGTCAAAAACG+CGG + chr4.3:64334868-64334887 None:intergenic 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG - chr4.3:64334540-64334559 MS.gene045670:intron 50.0%
!! GCGTTTTTGACTGCCCTAGA+GGG - chr4.3:64334867-64334886 MS.gene045670:intron 50.0%
!! TTTTGACTGCCCTAGAGGGA+TGG - chr4.3:64334871-64334890 MS.gene045670:intron 50.0%
!!! CTAGTTTTGATCGCGTCCTG+AGG + chr4.3:64334680-64334699 None:intergenic 50.0%
ACTCAGCAACTTAAGGGGGC+TGG - chr4.3:64334980-64334999 MS.gene045670:intron 55.0%
AGGAGTGGCTTGAGTAGCCA+TGG + chr4.3:64335044-64335063 None:intergenic 55.0%
CCACATGGAAGCTATGACGC+CGG - chr4.3:64335964-64335983 MS.gene045670:CDS 55.0%
CGGCGTCATAGCTTCCATGT+GGG + chr4.3:64335966-64335985 None:intergenic 55.0%
CTCAGCAACTTAAGGGGGCT+GGG - chr4.3:64334981-64335000 MS.gene045670:intron 55.0%
GGCTACTCAAGCCACTCCTT+AGG - chr4.3:64335045-64335064 MS.gene045670:intron 55.0%
!! CGCGTTTTTGACTGCCCTAG+AGG - chr4.3:64334866-64334885 MS.gene045670:intron 55.0%
CCGGCGTCATAGCTTCCATG+TGG + chr4.3:64335967-64335986 None:intergenic 60.0%
CGAAGCCAACACCAGGTGGA+AGG + chr4.3:64334343-64334362 None:intergenic 60.0%
GAAGGGGCGAAGCCAACACC+AGG + chr4.3:64334350-64334369 None:intergenic 65.0%
GGGGCGAAGCCAACACCAGG+TGG + chr4.3:64334347-64334366 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 64334332 64336027 64334332 ID=MS.gene045670
chr4.3 mRNA 64334332 64336027 64334332 ID=MS.gene045670.t1;Parent=MS.gene045670
chr4.3 exon 64335620 64336027 64335620 ID=MS.gene045670.t1.exon1;Parent=MS.gene045670.t1
chr4.3 CDS 64335620 64336027 64335620 ID=cds.MS.gene045670.t1;Parent=MS.gene045670.t1
chr4.3 exon 64334332 64334430 64334332 ID=MS.gene045670.t1.exon2;Parent=MS.gene045670.t1
chr4.3 CDS 64334332 64334430 64334332 ID=cds.MS.gene045670.t1;Parent=MS.gene045670.t1
Gene Sequence

>MS.gene045670

ATGGAATTCCTTCCACCTGGTGTTGGCTTCGCCCCTTCAGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCAATGGTTCTGACCTGATTAAGGAGCTGAACTTATACCAGTATGATCCGTTAGAATTGCCTCTTAGTCCATCATTTTTCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGCATTGTAAGATTGGGTTTTGGATGCGTAAGGGAGTTGTTCGAGACATTTGTGGAGTTGATAACGTGGTTGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCCCTCAGGACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCAGGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAAGTTTCCATATGTTCATTATTTCATCGATGATTAATTTATGTATTGGTAACGACAAACTTTTTTTTTTAATATAAATAATTATGCAGGCTCCTTTTGTTGTTTGCCGCGTTTTTGACTGCCCTAGAGGGATGGATCTTGACTCTGAATTTGGAGCCTTTTCTGATGTCGATGAAGGTGATGCTGCTGATGACGACTTCGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAGGGGGCTGGGACTAGTTCTAGTGCTGAGCAAGGCTATGCATCGCATTCCATGGCTACTCAAGCCACTCCTTAGGTAAAATATATTTCATTTTGATCTCTCGATATCAATTTTCGCATCGGCAAAAATTTTACAATGCTTAAATTTGTTTGAAATCAAAATTCAAAATTGTTTTTTGTCTGTTTTTGTTTATGTATATGTATTTCACTTTCTATTGGACATAAGTTTTAATAAAATACCTCCATCATATGTGAGCCACAATATCAATAATTTTCATGTATGTATGACCAACTTTTAAATCTCACACTAATTGTGGCTATTGCATGAAAATCATTGATATTGCAAATAATAATGATCAAAAGTGAAGCTGCATTAGCCATATTTGTTGTTATTCAAAACCTTTATGTATTGGTAGTTTTTGTGGTAGATATTTGAATCCAAATAGCTCCATTGCGTTTGGATTATTTATGTTTTGCAGTTACCAATTACCGAATTCTACATCCACAATTGTATCAAAAAATATGTTTAATTACGGAAGTCAATATTGACAGTTAACCAGTTAATGTTGTTGATCCTCTTTACAAACTCAATTGATTCATGTGATGGTATTTTTATTTTTATTTTGATCAATTTTATTGAATGTATCACTCTGCATATGATTATTTTCTTTTCTGTGTGTAGAAATTAAGTGATGATCCTCAAAACATGTAACAGATTAATAGTTAACATAGCTATTCTAACCAGATTCCTCGAAACATGTCCTTTTTATTTTTCTTTAAGTTTTTTGTGGTATTTTTTTTTGTGGTATTAAATTCATTATTATTATTAATATCATCATCACTTTTTGACAAAGCATTTTTTCATGTAATTTTATGGTGGAGAAAAGAGAGTGTTGCTAAAATATTGAATTTCTTTGTTTGATATTGATGTTTATCAGGCAAGTTATACTGAATTTCTTGACTATGTTGTGTCCCACATGGAAGCTATGACGCCGGAGCAACTTAAGCTTGCAATTATGGATGAAGATTTTATTTAA
Protein sequence

>MS.gene045670.t1

MEFLPPGVGFAPSDELLVSYYLANKNNEEVQNFNGSDLIKELNLYQYDPLELPLSPSFFFRHPREFYCFTAKVDEQRRHCKIGFWMRKGVVRDICGVDNVVVGKKSLFMFYIGNSPQDAIKTSWTMYEYTQVNNPQASYTEFLDYVVSHMEAMTPEQLKLAIMDEDFI