AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045804

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045804.t1 MTR_2g056000 99.265 136 1 0 1 136 51 186 2.20e-99 283
MS.gene045804.t1 MTR_4g112380 84.211 133 21 0 1 133 21 153 1.71e-83 241
MS.gene045804.t1 MTR_1g072790 35.417 96 60 1 1 94 39 134 2.89e-16 71.6
MS.gene045804.t1 MTR_4g133952 40.580 69 41 0 3 71 70 138 1.75e-15 70.5
MS.gene045804.t1 MTR_7g061270 32.000 100 66 1 1 98 36 135 2.06e-15 68.9
MS.gene045804.t1 MTR_7g100650 32.000 100 66 1 1 98 36 135 2.62e-15 68.9
MS.gene045804.t1 MTR_1g088860 37.313 67 42 0 3 69 48 114 3.91e-15 68.9
MS.gene045804.t1 MTR_1g039040 33.803 71 47 0 1 71 16 86 6.30e-14 65.5
MS.gene045804.t1 MTR_4g119500 32.468 77 52 0 3 79 34 110 6.40e-14 64.3
MS.gene045804.t1 MTR_3g058980 35.211 71 46 0 1 71 37 107 7.07e-14 65.5
MS.gene045804.t1 MTR_1g083070 34.783 69 45 0 3 71 16 84 1.00e-13 63.5
MS.gene045804.t1 MTR_0392s0020 32.979 94 57 1 3 90 30 123 1.11e-13 63.9
MS.gene045804.t1 MTR_5g095740 35.211 71 46 0 1 71 33 103 1.58e-13 64.3
MS.gene045804.t1 MTR_8g093920 29.412 102 66 1 3 104 52 147 5.88e-13 63.5
MS.gene045804.t1 MTR_2g026710 31.884 69 47 0 1 69 27 95 3.95e-12 60.5
MS.gene045804.t1 MTR_4g133938 34.328 67 44 0 3 69 31 97 1.54e-11 58.2
MS.gene045804.t1 MTR_8g091720 32.353 68 46 0 1 68 38 105 2.32e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045804.t1 AT5G23090 78.358 134 27 1 1 132 21 154 2.73e-75 221
MS.gene045804.t1 AT5G23090 78.358 134 27 1 1 132 21 154 2.73e-75 221
MS.gene045804.t1 AT5G23090 78.358 134 27 1 1 132 21 154 2.73e-75 221
MS.gene045804.t1 AT5G23090 77.612 134 27 2 1 132 21 153 1.15e-72 214
MS.gene045804.t1 AT5G23090 76.190 126 28 1 9 132 16 141 1.18e-67 201
MS.gene045804.t1 AT5G08190 82.787 122 21 0 1 122 21 142 2.18e-65 196
MS.gene045804.t1 AT5G08190 81.967 122 21 1 1 122 21 141 8.71e-63 189
MS.gene045804.t1 AT2G38880 34.524 84 53 1 1 82 31 114 4.68e-16 70.9
MS.gene045804.t1 AT2G38880 34.524 84 53 1 1 82 31 114 4.68e-16 70.9
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 5.38e-16 70.1
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 6.41e-16 69.7
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 6.41e-16 69.7
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 6.41e-16 69.7
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 8.76e-16 68.6
MS.gene045804.t1 AT2G38880 35.526 76 47 1 1 74 31 106 8.82e-16 69.3
MS.gene045804.t1 AT2G37060 38.028 71 44 0 1 71 40 110 8.39e-15 67.8
MS.gene045804.t1 AT2G37060 38.028 71 44 0 1 71 40 110 8.39e-15 67.8
MS.gene045804.t1 AT2G37060 38.028 71 44 0 1 71 40 110 8.39e-15 67.8
MS.gene045804.t1 AT2G38880 31.034 87 60 0 1 87 31 117 1.24e-14 66.6
MS.gene045804.t1 AT2G38880 31.034 87 60 0 1 87 31 117 1.24e-14 66.6
MS.gene045804.t1 AT2G38880 31.034 87 60 0 1 87 31 117 1.24e-14 66.6
MS.gene045804.t1 AT3G53340 31.667 120 76 2 1 114 39 158 1.30e-14 67.0
MS.gene045804.t1 AT3G53340 31.667 120 76 2 1 114 39 158 1.30e-14 67.0
MS.gene045804.t1 AT4G14540 30.380 79 55 0 1 79 31 109 5.90e-14 65.1
MS.gene045804.t1 AT5G47670 39.130 69 42 0 3 71 41 109 5.92e-14 65.9
MS.gene045804.t1 AT3G53340 38.028 71 44 0 1 71 39 109 7.03e-14 63.9
MS.gene045804.t1 AT5G47670 39.130 69 42 0 3 71 70 138 8.52e-14 66.2
MS.gene045804.t1 AT5G47670 39.130 69 42 0 3 71 70 138 8.52e-14 66.2
MS.gene045804.t1 AT3G53340 34.177 79 52 0 1 79 39 117 3.03e-13 63.2
MS.gene045804.t1 AT3G53340 34.177 79 52 0 1 79 39 117 3.03e-13 63.2
MS.gene045804.t1 AT5G47640 33.803 71 47 0 1 71 37 107 8.13e-13 62.8
MS.gene045804.t1 AT1G21970 36.232 69 44 0 3 71 71 139 1.14e-12 63.2
MS.gene045804.t1 AT1G09030 31.884 69 47 0 3 71 15 83 1.27e-11 58.5
MS.gene045804.t1 AT2G13570 34.848 66 43 0 3 68 48 113 1.51e-11 59.7
MS.gene045804.t1 AT2G47810 32.308 65 44 0 3 67 63 127 7.50e-11 57.0

Find 34 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCATGTATTGAAAGCTTT+AGG 0.251459 2.1:+36198768 MS.gene045804:CDS
TTATATCAGGTTCTTGGATT+TGG 0.252299 2.1:+36199548 MS.gene045804:intron
TCATATTTATATCAGGTTCT+TGG 0.296989 2.1:+36199542 MS.gene045804:intron
CTGCAGCAAGACTCTATAAA+AGG 0.332402 2.1:+36200532 MS.gene045804:intron
AACATTCAATTAACAAATCC+TGG 0.352577 2.1:-36197791 None:intergenic
AGCATGTATTGAAAGCTTTA+GGG 0.375222 2.1:+36198769 MS.gene045804:CDS
TCTAAACTTTGGTCAGCATC+TGG 0.377371 2.1:-36200670 None:intergenic
TTGGTCAGCATCTGGTTGAT+TGG 0.384189 2.1:-36200662 None:intergenic
TCTCTTGCAACACGCACATC+TGG 0.398229 2.1:-36197765 None:intergenic
AAAGTTAGTTCTCTAAACTT+TGG 0.415113 2.1:-36200681 None:intergenic
CTCTGCTAATGCTTGTTCCT+CGG 0.457821 2.1:-36200584 None:intergenic
CTCGGCTGCACCACTCCACT+TGG 0.459644 2.1:-36200557 None:intergenic
TGCTTGTTCCTCGGTCATCT+CGG 0.471970 2.1:-36200575 None:intergenic
AAAGCTTTCAATACATGCTC+AGG 0.488874 2.1:-36198765 None:intergenic
GAGGCACGTGCTAGAATGAA+TGG 0.500006 2.1:+36200625 MS.gene045804:CDS
TATGTAACAGAGAGGAAAGA+AGG 0.521621 2.1:+36198733 MS.gene045804:CDS
TTGTTAATTGAATGTTGTGT+AGG 0.530693 2.1:+36197798 MS.gene045804:CDS
AAGCATTAGCAGAGCAGCAA+AGG 0.547129 2.1:+36200593 MS.gene045804:CDS
CATTTGACTCTGATGAGACG+AGG 0.555057 2.1:-36198707 None:intergenic
ATCTGGTTGATTGGAAGTAA+CGG 0.576071 2.1:-36200653 None:intergenic
TGGATTTGGCGAGTACATTG+AGG 0.592411 2.1:+36199562 MS.gene045804:CDS
ACATTCAATTAACAAATCCT+GGG 0.595298 2.1:-36197790 None:intergenic
AGCATATGAACAACACAAGA+TGG 0.603905 2.1:+36199595 MS.gene045804:CDS
GCATGTATTGAAAGCTTTAG+GGG 0.617694 2.1:+36198770 MS.gene045804:CDS
CTTGCAACACGCACATCTGG+AGG 0.618892 2.1:-36197762 None:intergenic
ATAAAAGGTGCCAAGTGGAG+TGG 0.637786 2.1:+36200547 MS.gene045804:CDS
GCAGCAAAGGATGTTTGCAG+AGG 0.645184 2.1:+36200606 MS.gene045804:CDS
GCGTGTTGCAAGAGATACCC+AGG 0.645605 2.1:+36197773 MS.gene045804:CDS
ACTCTATAAAAGGTGCCAAG+TGG 0.653102 2.1:+36200542 MS.gene045804:CDS
GCACGTGCTAGAATGAATGG+AGG 0.666011 2.1:+36200628 MS.gene045804:CDS
TGGTGCAGCCGAGATGACCG+AGG 0.683047 2.1:+36200567 MS.gene045804:CDS
CACGTGCTAGAATGAATGGA+GGG 0.684842 2.1:+36200629 MS.gene045804:CDS
ACAACACAAGATGGAGACAG+TGG 0.698542 2.1:+36199604 MS.gene045804:CDS
AAATGAAGTATGTAACAGAG+AGG 0.704349 2.1:+36198725 MS.gene045804:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAAAATAAATAAAAA+AGG - chr2.1:36197837-36197856 None:intergenic 0.0%
!!! TTTATTTTTTTTAAAATAAA+AGG + chr2.1:36199136-36199155 MS.gene045804:intron 0.0%
!!! AAGTTTTTTTTTTTTAGTTT+AGG + chr2.1:36197908-36197927 MS.gene045804:intron 10.0%
!!! ATTTTTTTTAAAATAAAAGG+AGG + chr2.1:36199139-36199158 MS.gene045804:intron 10.0%
!!! TTTTTTTTAAAATAAAAGGA+GGG + chr2.1:36199140-36199159 MS.gene045804:intron 10.0%
!! ATTGAATTCTTTATGATTTA+TGG + chr2.1:36200238-36200257 MS.gene045804:intron 15.0%
!! CAATCAAATTAAAATTGAAA+AGG - chr2.1:36198844-36198863 None:intergenic 15.0%
!! TAAACAAATGATAGTTAATA+TGG - chr2.1:36199027-36199046 None:intergenic 15.0%
!!! TACTTTTCTTTTAATTGATT+TGG + chr2.1:36199519-36199538 MS.gene045804:intron 15.0%
!! AAAATAATAGATGAATTACG+AGG - chr2.1:36198136-36198155 None:intergenic 20.0%
!! AATCAGTTAATTTCTGTTTA+TGG + chr2.1:36200467-36200486 MS.gene045804:intron 20.0%
!! CATAATACTCATAACAATTT+GGG - chr2.1:36199881-36199900 None:intergenic 20.0%
!! TCATAATACTCATAACAATT+TGG - chr2.1:36199882-36199901 None:intergenic 20.0%
!! TGAAAATTATGATAGTTCTT+TGG + chr2.1:36198110-36198129 MS.gene045804:intron 20.0%
!!! AAACAAAAGTATGTTGTATT+TGG - chr2.1:36199439-36199458 None:intergenic 20.0%
!!! ATCAAAATTTGGAGTTAAAA+TGG - chr2.1:36198815-36198834 None:intergenic 20.0%
!!! GTTTAGAATTTTGCAATAAA+AGG + chr2.1:36199382-36199401 MS.gene045804:intron 20.0%
!!! TGTATTATTTTGTTGTATCT+GGG + chr2.1:36199354-36199373 MS.gene045804:intron 20.0%
!!! TTTACTAATTGAAGTTTTGT+TGG + chr2.1:36198664-36198683 MS.gene045804:intron 20.0%
! AACATTCAATTAACAAATCC+TGG - chr2.1:36197794-36197813 None:intergenic 25.0%
! ACATTCAATTAACAAATCCT+GGG - chr2.1:36197793-36197812 None:intergenic 25.0%
! ATACTGTAATCAATTGTCAA+TGG - chr2.1:36199282-36199301 None:intergenic 25.0%
! GAAAATATTAAGAGTAACCT+TGG + chr2.1:36199900-36199919 MS.gene045804:intron 25.0%
! TATTTGGAAAACTTAAACTC+AGG - chr2.1:36199423-36199442 None:intergenic 25.0%
! TCAAACAAATTGGATGTATT+TGG + chr2.1:36198375-36198394 MS.gene045804:intron 25.0%
! TCATATTTATATCAGGTTCT+TGG + chr2.1:36199542-36199561 MS.gene045804:intron 25.0%
! TCTTTATGATTTATGGATCT+GGG + chr2.1:36200245-36200264 MS.gene045804:intron 25.0%
! TTATCTTCGAATAATACTAC+TGG + chr2.1:36199949-36199968 MS.gene045804:intron 25.0%
! TTCTTTATGATTTATGGATC+TGG + chr2.1:36200244-36200263 MS.gene045804:intron 25.0%
! TTGTTAATTGAATGTTGTGT+AGG + chr2.1:36197798-36197817 MS.gene045804:CDS 25.0%
!! AATTTGGAGTTAAAATGGTT+TGG - chr2.1:36198810-36198829 None:intergenic 25.0%
!! CTTCTGCTTATATTTTGTAA+CGG + chr2.1:36198438-36198457 MS.gene045804:intron 25.0%
!! GATTTGGTCATATTTATATC+AGG + chr2.1:36199535-36199554 MS.gene045804:intron 25.0%
!! TTACATTTTCGTAACCAAAA+GGG - chr2.1:36198342-36198361 None:intergenic 25.0%
!! TTTAAAATAAAAGGAGGGAA+AGG + chr2.1:36199145-36199164 MS.gene045804:intron 25.0%
!!! GTGTATTATTTTGTTGTATC+TGG + chr2.1:36199353-36199372 MS.gene045804:intron 25.0%
!!! TCAAAGAAAGTTGATGTATT+TGG - chr2.1:36198414-36198433 None:intergenic 25.0%
!!! TTTAACTCCAAATTTTGATG+TGG + chr2.1:36198816-36198835 MS.gene045804:intron 25.0%
AAAGGATCCACATCAAAATT+TGG - chr2.1:36198826-36198845 None:intergenic 30.0%
AAATGAAGTATGTAACAGAG+AGG + chr2.1:36198725-36198744 MS.gene045804:CDS 30.0%
AATGTTAGTAATTGCAGATC+GGG - chr2.1:36198091-36198110 None:intergenic 30.0%
AATTCATCTCTAACAATGCA+AGG - chr2.1:36199811-36199830 None:intergenic 30.0%
AGCATGTATTGAAAGCTTTA+GGG + chr2.1:36198769-36198788 MS.gene045804:CDS 30.0%
ATCAGATAGAAACATTGAAC+TGG - chr2.1:36199930-36199949 None:intergenic 30.0%
ATCGATTGTGGATATATTGT+AGG + chr2.1:36199770-36199789 MS.gene045804:intron 30.0%
ATCTTAATGATACGATGTAG+CGG + chr2.1:36199052-36199071 MS.gene045804:intron 30.0%
CAAGAATAACACCATTGAAA+AGG - chr2.1:36198930-36198949 None:intergenic 30.0%
CAATGTTAGTAATTGCAGAT+CGG - chr2.1:36198092-36198111 None:intergenic 30.0%
CATATCATCTAAGCTGTAAA+TGG + chr2.1:36198472-36198491 MS.gene045804:intron 30.0%
CATGAATCATCTATCAAAAC+TGG - chr2.1:36198623-36198642 None:intergenic 30.0%
GCAAAAATGTGTAAAATCGT+CGG - chr2.1:36198250-36198269 None:intergenic 30.0%
GGCACATCATATTAATTAAC+TGG + chr2.1:36200430-36200449 MS.gene045804:intron 30.0%
TAAGTTTATCGCGAATTTCT+TGG + chr2.1:36198050-36198069 MS.gene045804:intron 30.0%
TCTATATCTCAACTATAACG+AGG + chr2.1:36198571-36198590 MS.gene045804:intron 30.0%
TTATAGAAGGACCCATAAAA+CGG + chr2.1:36200141-36200160 MS.gene045804:intron 30.0%
TTATATCAGGTTCTTGGATT+TGG + chr2.1:36199548-36199567 MS.gene045804:intron 30.0%
! CTTACATTTTCGTAACCAAA+AGG - chr2.1:36198343-36198362 None:intergenic 30.0%
! GATGTATTTGGTTCAAAATC+TGG + chr2.1:36198387-36198406 MS.gene045804:intron 30.0%
! TCTTGATTTGAAAGCGATAA+AGG + chr2.1:36198302-36198321 MS.gene045804:intron 30.0%
! TGATTTGTATCTTTCTCATG+TGG + chr2.1:36198902-36198921 MS.gene045804:intron 30.0%
! TTCTGTTTATGGATTGACTT+TGG + chr2.1:36200478-36200497 MS.gene045804:intron 30.0%
! TTTTATGGGTCCTTCTATAA+TGG - chr2.1:36200141-36200160 None:intergenic 30.0%
!! CAGTTTTGATAGATGATTCA+TGG + chr2.1:36198621-36198640 MS.gene045804:intron 30.0%
!! TGCTTATATTTTGTAACGGA+GGG + chr2.1:36198442-36198461 MS.gene045804:intron 30.0%
!!! AATTTTTTTTAAACCCGCCA+CGG + chr2.1:36199251-36199270 MS.gene045804:intron 30.0%
AAAGCGAGAGTCAAACAAAT+TGG + chr2.1:36198365-36198384 MS.gene045804:intron 35.0%
AAAGCTTTCAATACATGCTC+AGG - chr2.1:36198768-36198787 None:intergenic 35.0%
AATTGAATGTTGTGTAGGTC+AGG + chr2.1:36197803-36197822 MS.gene045804:intron 35.0%
ACCCATGACTTAGGTTAATT+GGG + chr2.1:36199842-36199861 MS.gene045804:intron 35.0%
ACTTATGCTGTTATCACCTA+TGG - chr2.1:36198035-36198054 None:intergenic 35.0%
AGCATATGAACAACACAAGA+TGG + chr2.1:36199595-36199614 MS.gene045804:CDS 35.0%
ATCTGGTTGATTGGAAGTAA+CGG - chr2.1:36200656-36200675 None:intergenic 35.0%
GAGCATGTATTGAAAGCTTT+AGG + chr2.1:36198768-36198787 MS.gene045804:CDS 35.0%
GCATTAAGAAAAATCACCCT+TGG - chr2.1:36200003-36200022 None:intergenic 35.0%
GGTTAGTGATTAATTGACGT+TGG + chr2.1:36197929-36197948 MS.gene045804:intron 35.0%
TACAAAGACCTCTCAATTTG+AGG + chr2.1:36199734-36199753 MS.gene045804:intron 35.0%
TAGCCATCAAACTAACTACA+AGG - chr2.1:36198964-36198983 None:intergenic 35.0%
TAGTTAATATGGCTCCCTAA+AGG - chr2.1:36199016-36199035 None:intergenic 35.0%
TATATTATTTGCCCACTCCT+TGG + chr2.1:36198866-36198885 MS.gene045804:intron 35.0%
TATGTAACAGAGAGGAAAGA+AGG + chr2.1:36198733-36198752 MS.gene045804:CDS 35.0%
TATTCCGAAAGCAAATAGAC+TGG + chr2.1:36200164-36200183 MS.gene045804:intron 35.0%
TCCCAATTAACCTAAGTCAT+GGG - chr2.1:36199846-36199865 None:intergenic 35.0%
TCGAGTGATATTAGACAACA+TGG + chr2.1:36199668-36199687 MS.gene045804:intron 35.0%
TGAGAGGTCTTTGTATCTTA+AGG - chr2.1:36199729-36199748 None:intergenic 35.0%
TGGCATAAATTATGTCCTGT+GGG + chr2.1:36200061-36200080 MS.gene045804:intron 35.0%
TTGGCATAAATTATGTCCTG+TGG + chr2.1:36200060-36200079 MS.gene045804:intron 35.0%
! AGATTAGCTAGGATCCTTTA+GGG + chr2.1:36198999-36199018 MS.gene045804:intron 35.0%
! CTGCTTATATTTTGTAACGG+AGG + chr2.1:36198441-36198460 MS.gene045804:intron 35.0%
! CTTTCGGAATACCGTTTTAT+GGG - chr2.1:36200155-36200174 None:intergenic 35.0%
! GCATGTATTGAAAGCTTTAG+GGG + chr2.1:36198770-36198789 MS.gene045804:CDS 35.0%
! TAGATTAGCTAGGATCCTTT+AGG + chr2.1:36198998-36199017 MS.gene045804:intron 35.0%
! TTGCCTTGTAGTTAGTTTGA+TGG + chr2.1:36198958-36198977 MS.gene045804:intron 35.0%
! TTTTATAGAGTCTTGCTGCA+GGG - chr2.1:36200533-36200552 None:intergenic 35.0%
!! AAGCCATAACTGATTTTGTG+CGG + chr2.1:36198006-36198025 MS.gene045804:intron 35.0%
AAACACCCAAATGCAAAGAG+TGG - chr2.1:36199119-36199138 None:intergenic 40.0%
AACACCCAAATGCAAAGAGT+GGG - chr2.1:36199118-36199137 None:intergenic 40.0%
ATCAATGCACAGAACTTCCA+AGG - chr2.1:36198886-36198905 None:intergenic 40.0%
ATGCCAAGTTGCCTACAATA+TGG - chr2.1:36200047-36200066 None:intergenic 40.0%
CACCCATGACTTAGGTTAAT+TGG + chr2.1:36199841-36199860 MS.gene045804:intron 40.0%
CGAGCAATTCAAAATGCACA+TGG - chr2.1:36199651-36199670 None:intergenic 40.0%
CTACTGGAAGCTGAATTTCT+AGG + chr2.1:36199965-36199984 MS.gene045804:intron 40.0%
CTCCCAATTAACCTAAGTCA+TGG - chr2.1:36199847-36199866 None:intergenic 40.0%
CTGCAGCAAGACTCTATAAA+AGG + chr2.1:36200532-36200551 MS.gene045804:intron 40.0%
CTGTCCAGTCTATTTGCTTT+CGG - chr2.1:36200171-36200190 None:intergenic 40.0%
GAATCCCACTCTTTGCATTT+GGG + chr2.1:36199111-36199130 MS.gene045804:intron 40.0%
GGGATCGTATCCATTATAGA+AGG + chr2.1:36200128-36200147 MS.gene045804:intron 40.0%
GTAACCAAAAGGGAGTCATT+AGG - chr2.1:36198332-36198351 None:intergenic 40.0%
GTGGATATATTGTAGGCACT+AGG + chr2.1:36199777-36199796 MS.gene045804:intron 40.0%
TAAATTATGTCCTGTGGGCA+AGG + chr2.1:36200066-36200085 MS.gene045804:intron 40.0%
TAACAACATACTAAGCCCTC+TGG + chr2.1:36199214-36199233 MS.gene045804:intron 40.0%
TAACCTTACTGTGGGTTCTT+TGG + chr2.1:36200207-36200226 MS.gene045804:intron 40.0%
TATGGATCTGGGTGTTTGTA+TGG + chr2.1:36200256-36200275 MS.gene045804:intron 40.0%
TATGTTGTTATGCACCCAGA+GGG - chr2.1:36199204-36199223 None:intergenic 40.0%
TCTAAACTTTGGTCAGCATC+TGG - chr2.1:36200673-36200692 None:intergenic 40.0%
TGAATCCCACTCTTTGCATT+TGG + chr2.1:36199110-36199129 MS.gene045804:intron 40.0%
TGAGAGGTCTCTGTATCTTT+AGG - chr2.1:36200095-36200114 None:intergenic 40.0%
TGCCAAGTTGCCTACAATAT+GGG - chr2.1:36200046-36200065 None:intergenic 40.0%
TTCCCATATTGTAGGCAACT+TGG + chr2.1:36200041-36200060 MS.gene045804:intron 40.0%
TTTATCGCGAATTTCTTGGC+CGG + chr2.1:36198054-36198073 MS.gene045804:intron 40.0%
! AACATTGAACTGGTTCACCA+AGG - chr2.1:36199920-36199939 None:intergenic 40.0%
! AATGCTGTTTGTACCAGTCT+GGG + chr2.1:36200018-36200037 MS.gene045804:intron 40.0%
! CTCATGTGGATCCTTTTCAA+TGG + chr2.1:36198916-36198935 MS.gene045804:intron 40.0%
! CTTTTATAGAGTCTTGCTGC+AGG - chr2.1:36200534-36200553 None:intergenic 40.0%
! GCTTTCGGAATACCGTTTTA+TGG - chr2.1:36200156-36200175 None:intergenic 40.0%
! TAATGCTGTTTGTACCAGTC+TGG + chr2.1:36200017-36200036 MS.gene045804:intron 40.0%
! TTGACCTAATGACTCCCTTT+TGG + chr2.1:36198325-36198344 MS.gene045804:intron 40.0%
! TTTGATGGCTATCTGTGCAA+TGG + chr2.1:36198973-36198992 MS.gene045804:intron 40.0%
!! ACTCTATAAAAGGTGCCAAG+TGG + chr2.1:36200542-36200561 MS.gene045804:CDS 40.0%
!! CTTCTAGTTTCTGGAAGACA+CGG + chr2.1:36198276-36198295 MS.gene045804:intron 40.0%
!! TGCTAGTCACTTCTAGTTTC+TGG + chr2.1:36198267-36198286 MS.gene045804:intron 40.0%
AAGCATTAGCAGAGCAGCAA+AGG + chr2.1:36200593-36200612 MS.gene045804:CDS 45.0%
AATTTGTGTCCAGTGACCTG+TGG + chr2.1:36199694-36199713 MS.gene045804:intron 45.0%
ACAAACACTATTGCGAGAGC+AGG + chr2.1:36199083-36199102 MS.gene045804:intron 45.0%
ACAACACAAGATGGAGACAG+TGG + chr2.1:36199604-36199623 MS.gene045804:CDS 45.0%
AGTCTGGGTTCCCATATTGT+AGG + chr2.1:36200033-36200052 MS.gene045804:intron 45.0%
ATGTTGTTATGCACCCAGAG+GGG - chr2.1:36199203-36199222 None:intergenic 45.0%
ATTTGTGTCCAGTGACCTGT+GGG + chr2.1:36199695-36199714 MS.gene045804:intron 45.0%
CAAACACTATTGCGAGAGCA+GGG + chr2.1:36199084-36199103 MS.gene045804:intron 45.0%
CAACCAAAGAACCCACAGTA+AGG - chr2.1:36200213-36200232 None:intergenic 45.0%
CACGTGCTAGAATGAATGGA+GGG + chr2.1:36200629-36200648 MS.gene045804:CDS 45.0%
CATTTGACTCTGATGAGACG+AGG - chr2.1:36198710-36198729 None:intergenic 45.0%
CGAAAGCAAATAGACTGGAC+AGG + chr2.1:36200169-36200188 MS.gene045804:intron 45.0%
CGGTCCGAAAAAACATGTGA+CGG - chr2.1:36198230-36198249 None:intergenic 45.0%
CTCTGCTAATGCTTGTTCCT+CGG - chr2.1:36200587-36200606 None:intergenic 45.0%
CTTACTGTGGGTTCTTTGGT+TGG + chr2.1:36200211-36200230 MS.gene045804:intron 45.0%
GGTCCGAAAAAACATGTGAC+GGG - chr2.1:36198229-36198248 None:intergenic 45.0%
GTAAGGTTAACCCGCTCATT+AGG - chr2.1:36200196-36200215 None:intergenic 45.0%
GTATGTTGTTATGCACCCAG+AGG - chr2.1:36199205-36199224 None:intergenic 45.0%
TACAATATGGGAACCCAGAC+TGG - chr2.1:36200034-36200053 None:intergenic 45.0%
TACAGAGACCTCTCAATGTG+AGG + chr2.1:36200100-36200119 MS.gene045804:intron 45.0%
TAGGATCTCTGTCTGACCAA+GGG + chr2.1:36199984-36200003 MS.gene045804:intron 45.0%
TCGCCGCACAAAATCAGTTA+TGG - chr2.1:36198012-36198031 None:intergenic 45.0%
TGGATTTGGCGAGTACATTG+AGG + chr2.1:36199562-36199581 MS.gene045804:CDS 45.0%
TTATCGCGAATTTCTTGGCC+GGG + chr2.1:36198055-36198074 MS.gene045804:intron 45.0%
TTGGTCAGCATCTGGTTGAT+TGG - chr2.1:36200665-36200684 None:intergenic 45.0%
! ACCTCTCAATTTGAGGTCCA+GGG + chr2.1:36199741-36199760 MS.gene045804:intron 45.0%
! TGCAATGGCGTAGATTAGCT+AGG + chr2.1:36198988-36199007 MS.gene045804:intron 45.0%
!! ATAAAAGGTGCCAAGTGGAG+TGG + chr2.1:36200547-36200566 MS.gene045804:CDS 45.0%
!!! CTGCCCGTCACATGTTTTTT+CGG + chr2.1:36198223-36198242 MS.gene045804:intron 45.0%
!!! TTTTTTTAAACCCGCCACGG+AGG + chr2.1:36199254-36199273 MS.gene045804:intron 45.0%
AATTGTCAATGGTGCCTCCG+TGG - chr2.1:36199271-36199290 None:intergenic 50.0%
ACCTCTCAATGTGAGGTCGA+GGG + chr2.1:36200107-36200126 MS.gene045804:intron 50.0%
ACGAACCTTGTGCCGTGTAT+TGG + chr2.1:36198180-36198199 MS.gene045804:intron 50.0%
ACTGGACAGGTCCTAATGAG+CGG + chr2.1:36200182-36200201 MS.gene045804:intron 50.0%
AGATCGGGAATTCTGACACC+CGG - chr2.1:36198076-36198095 None:intergenic 50.0%
AGGCGTGGAGATCCAATACA+CGG - chr2.1:36198195-36198214 None:intergenic 50.0%
AGTCGATCATGAACCCCTCT+GGG + chr2.1:36199187-36199206 MS.gene045804:intron 50.0%
CAACATACTAAGCCCTCTGG+CGG + chr2.1:36199217-36199236 MS.gene045804:intron 50.0%
CCACAATCGATATGATCCCC+TGG - chr2.1:36199761-36199780 None:intergenic 50.0%
CTAGGATCTCTGTCTGACCA+AGG + chr2.1:36199983-36200002 MS.gene045804:intron 50.0%
GAGATCCAATACACGGCACA+AGG - chr2.1:36198188-36198207 None:intergenic 50.0%
GAGGCACGTGCTAGAATGAA+TGG + chr2.1:36200625-36200644 MS.gene045804:CDS 50.0%
GATGAGCATGCACACACACA+AGG + chr2.1:36200356-36200375 MS.gene045804:intron 50.0%
GCACAGAACTTCCAAGGAGT+GGG - chr2.1:36198880-36198899 None:intergenic 50.0%
GCACGTGCTAGAATGAATGG+AGG + chr2.1:36200628-36200647 MS.gene045804:CDS 50.0%
GCAGCAAAGGATGTTTGCAG+AGG + chr2.1:36200606-36200625 MS.gene045804:CDS 50.0%
GTATTGGATCTCCACGCCTT+CGG + chr2.1:36198196-36198215 MS.gene045804:intron 50.0%
GTTACTCGCACCCATGACTT+AGG + chr2.1:36199833-36199852 MS.gene045804:intron 50.0%
TAGTCGATCATGAACCCCTC+TGG + chr2.1:36199186-36199205 MS.gene045804:intron 50.0%
TCTCTTGCAACACGCACATC+TGG - chr2.1:36197768-36197787 None:intergenic 50.0%
TGCACAGAACTTCCAAGGAG+TGG - chr2.1:36198881-36198900 None:intergenic 50.0%
TGCTTGTTCCTCGGTCATCT+CGG - chr2.1:36200578-36200597 None:intergenic 50.0%
! ATGATGTGCCCTGCTGCTTA+TGG - chr2.1:36200420-36200439 None:intergenic 50.0%
! CCAGGGGATCATATCGATTG+TGG + chr2.1:36199758-36199777 MS.gene045804:intron 50.0%
! CCTCTCAATTTGAGGTCCAG+GGG + chr2.1:36199742-36199761 MS.gene045804:intron 50.0%
! GACCTCTCAATTTGAGGTCC+AGG + chr2.1:36199740-36199759 MS.gene045804:intron 50.0%
! TGATGTGCCCTGCTGCTTAT+GGG - chr2.1:36200419-36200438 None:intergenic 50.0%
! TGATTTTGTGCGGCGACCAT+AGG + chr2.1:36198016-36198035 MS.gene045804:intron 50.0%
!! CGAAAAAACATGTGACGGGC+AGG - chr2.1:36198225-36198244 None:intergenic 50.0%
!! GAGCGGGTTAACCTTACTGT+GGG + chr2.1:36200199-36200218 MS.gene045804:intron 50.0%
!! TGAGCGGGTTAACCTTACTG+TGG + chr2.1:36200198-36200217 MS.gene045804:intron 50.0%
CCCCTGGACCTCAAATTGAG+AGG - chr2.1:36199745-36199764 None:intergenic 55.0%
CCGCAATCCCATAAGCAGCA+GGG + chr2.1:36200409-36200428 MS.gene045804:intron 55.0%
CCTCTCAATGTGAGGTCGAG+GGG + chr2.1:36200108-36200127 MS.gene045804:intron 55.0%
CTGGACAGGTCCTAATGAGC+GGG + chr2.1:36200183-36200202 MS.gene045804:intron 55.0%
CTTGCAACACGCACATCTGG+AGG - chr2.1:36197765-36197784 None:intergenic 55.0%
GACCTCTCAATGTGAGGTCG+AGG + chr2.1:36200106-36200125 MS.gene045804:intron 55.0%
GCGTGTTGCAAGAGATACCC+AGG + chr2.1:36197773-36197792 MS.gene045804:CDS 55.0%
GGATTGCGGCTCTCAAGCAT+TGG - chr2.1:36200398-36200417 None:intergenic 55.0%
TACTAAGCCCTCTGGCGGAA+TGG + chr2.1:36199222-36199241 MS.gene045804:intron 55.0%
TGCATTGCCATTCCGCCAGA+GGG - chr2.1:36199232-36199251 None:intergenic 55.0%
TTGCATTGCCATTCCGCCAG+AGG - chr2.1:36199233-36199252 None:intergenic 55.0%
! CCCTGCTGCTTATGGGATTG+CGG - chr2.1:36200412-36200431 None:intergenic 55.0%
!! CTTTAGGTTGCCTTGCCCAC+AGG - chr2.1:36200079-36200098 None:intergenic 55.0%
CCCCTCGACCTCACATTGAG+AGG - chr2.1:36200111-36200130 None:intergenic 60.0%
CTTAAGGCTGCCATGCCCAC+AGG - chr2.1:36199713-36199732 None:intergenic 60.0%
GCCGCAATCCCATAAGCAGC+AGG + chr2.1:36200408-36200427 MS.gene045804:intron 60.0%
TGTCAATGGTGCCTCCGTGG+CGG - chr2.1:36199268-36199287 None:intergenic 60.0%
TGTCCAGTGACCTGTGGGCA+TGG + chr2.1:36199700-36199719 MS.gene045804:intron 60.0%
!! TGTGACGGGCAGGAAACCGA+AGG - chr2.1:36198215-36198234 None:intergenic 60.0%
CTCGGCTGCACCACTCCACT+TGG - chr2.1:36200560-36200579 None:intergenic 65.0%
CTGCCATGCCCACAGGTCAC+TGG - chr2.1:36199706-36199725 None:intergenic 65.0%
GTCAATGGTGCCTCCGTGGC+GGG - chr2.1:36199267-36199286 None:intergenic 65.0%
TGGTGCAGCCGAGATGACCG+AGG + chr2.1:36200567-36200586 MS.gene045804:CDS 65.0%
CGGGCAGGAAACCGAAGGCG+TGG - chr2.1:36198210-36198229 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 36197735 36200699 36197735 ID=MS.gene045804
chr2.1 mRNA 36197735 36200699 36197735 ID=MS.gene045804.t1;Parent=MS.gene045804
chr2.1 exon 36197735 36197819 36197735 ID=MS.gene045804.t1.exon1;Parent=MS.gene045804.t1
chr2.1 CDS 36197735 36197819 36197735 ID=cds.MS.gene045804.t1;Parent=MS.gene045804.t1
chr2.1 exon 36198697 36198791 36198697 ID=MS.gene045804.t1.exon2;Parent=MS.gene045804.t1
chr2.1 CDS 36198697 36198791 36198697 ID=cds.MS.gene045804.t1;Parent=MS.gene045804.t1
chr2.1 exon 36199557 36199625 36199557 ID=MS.gene045804.t1.exon3;Parent=MS.gene045804.t1
chr2.1 CDS 36199557 36199625 36199557 ID=cds.MS.gene045804.t1;Parent=MS.gene045804.t1
chr2.1 exon 36200538 36200699 36200538 ID=MS.gene045804.t1.exon4;Parent=MS.gene045804.t1
chr2.1 CDS 36200538 36200699 36200538 ID=cds.MS.gene045804.t1;Parent=MS.gene045804.t1
Gene Sequence

>MS.gene045804

ATGACGAAAATTATTAAAGAGATGTTGCCTCCAGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTAATTGAATGTTGTGTAGGTCAGGATTTCAAACCTTTTTTATTTATTTTTTATAAATTTGATGAATTGTGTTGTCAATTTTATTTTAAAAAAATTATTTTAGTTCAAAGTTTTTTTTTTTTAGTTTAGGTTAGTGATTAATTGACGTTGGTTTGTTTCAGATTTTTTCAATATATGTGTATATTAAGTGTCACTATAATTAATGAAGCCATAACTGATTTTGTGCGGCGACCATAGGTGATAACAGCATAAGTTTATCGCGAATTTCTTGGCCGGGTGTCAGAATTCCCGATCTGCAATTACTAACATTGAAAATTATGATAGTTCTTTGGCCTCGTAATTCATCTATTATTTTTATTTACAATTTACAATATAAATGACGAACCTTGTGCCGTGTATTGGATCTCCACGCCTTCGGTTTCCTGCCCGTCACATGTTTTTTCGGACCGACGATTTTACACATTTTTGCTAGTCACTTCTAGTTTCTGGAAGACACGGATGTCTTGATTTGAAAGCGATAAAGGTTGACCTAATGACTCCCTTTTGGTTACGAAAATGTAAGCAAAAGCGAGAGTCAAACAAATTGGATGTATTTGGTTCAAAATCTGGTCCAAATACATCAACTTTCTTTGACTTGCTTCTGCTTATATTTTGTAACGGAGGGAGTATATCATATCATCTAAGCTGTAAATGGCGTTGAATGTTAAATATATATTACATTTTTTATGCTAATTTGTTTTATATCTAAATATAAACTTGTGTTGTTTGCTTCTATATCTCAACTATAACGAGGTGCTCTATAAATGTGTTGTTTTAGCTCCAGTTTTGATAGATGATTCATGGTTTATGATCATAGTTTTCTCTTTACTAATTGAAGTTTTGTTGGCTGATTGTAGAGTTCATAAACCTCGTCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACGATTGCACCTGAGCATGTATTGAAAGCTTTAGGGGTATTCATCTAATGTCCAAACCATTTTAACTCCAAATTTTGATGTGGATCCTTTTCAATTTTAATTTGATTGCTTATATTATTTGCCCACTCCTTGGAAGTTCTGTGCATTGATTTGTATCTTTCTCATGTGGATCCTTTTCAATGGTGTTATTCTTGATTTTTCTTTGCCTTGTAGTTAGTTTGATGGCTATCTGTGCAATGGCGTAGATTAGCTAGGATCCTTTAGGGAGCCATATTAACTATCATTTGTTTATTGACATCTTAATGATACGATGTAGCGGTATTTGCTACAAACACTATTGCGAGAGCAGGGATTTGAATCCCACTCTTTGCATTTGGGTGTTTATTTTTTTTAAAATAAAAGGAGGGAAAGGCTATAATTTCGTACATCATAGTCGATCATGAACCCCTCTGGGTGCATAACAACATACTAAGCCCTCTGGCGGAATGGCAATGCAATTTTTTTTAAACCCGCCACGGAGGCACCATTGACAATTGATTACAGTATTATTTCGAAATACTATATATATATATATATATATATATATATTATATATGCGTGTATTATTTTGTTGTATCTGGGATTGTGTTTAGAATTTTGCAATAAAAGGTTATTCACTGTAATTCCTGAGTTTAAGTTTTCCAAATACAACATACTTTTGTTTACTTGTGTTATACTTGCATTCATTAAAATGAGATTGTTAATAGTACAACATGTCTGTTATTACTTTTCTTTTAATTGATTTGGTCATATTTATATCAGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGATGGAGACAGTGGTAAATGTTTAATGCTAACAATCCATGTGCATTTTGAATTGCTCGAGTGATATTAGACAACATGGCATAATTTGTGTCCAGTGACCTGTGGGCATGGCAGCCTTAAGATACAAAGACCTCTCAATTTGAGGTCCAGGGGATCATATCGATTGTGGATATATTGTAGGCACTAGGCACACTCGCCTTGCATTGTTAGAGATGAATTCAGTTACTCGCACCCATGACTTAGGTTAATTGGGAGATGTAAGCATTCCCAAATTGTTATGAGTATTATGAAAATATTAAGAGTAACCTTGGTGAACCAGTTCAATGTTTCTATCTGATTATCTTCGAATAATACTACTGGAAGCTGAATTTCTAGGATCTCTGTCTGACCAAGGGTGATTTTTCTTAATGCTGTTTGTACCAGTCTGGGTTCCCATATTGTAGGCAACTTGGCATAAATTATGTCCTGTGGGCAAGGCAACCTAAAGATACAGAGACCTCTCAATGTGAGGTCGAGGGGATCGTATCCATTATAGAAGGACCCATAAAACGGTATTCCGAAAGCAAATAGACTGGACAGGTCCTAATGAGCGGGTTAACCTTACTGTGGGTTCTTTGGTTGGTGAAATTGAATTCTTTATGATTTATGGATCTGGGTGTTTGTATGGTCATCTATGTTTTAGAGTTCATAGATTGAACTTGAATGTAATTTTGCAGATTGTTGTGTAGTTTGCGTTTTGAGAGTGATGAGCATGCACACACACAAGGTCTAGATTTTATTATTCCAATGCTTGAGAGCCGCAATCCCATAAGCAGCAGGGCACATCATATTAATTAACTGGACAAGTGAAATTTGAATCAGTTAATTTCTGTTTATGGATTGACTTTGGTGTAAAATTATTTTCTGATATATTTGTTGCCCTGCAGCAAGACTCTATAAAAGGTGCCAAGTGGAGTGGTGCAGCCGAGATGACCGAGGAACAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGACCGTTACTTCCAATCAACCAGATGCTGACCAAAGTTTAGAGAACTAA
Protein sequence

>MS.gene045804.t1

MTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTVTSNQPDADQSLEN