Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045838.t1 | RHN74160.1 | 86.2 | 334 | 41 | 2 | 1 | 333 | 1 | 330 | 1.00E-146 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045838.t1 | Q9T072 | 50.0 | 158 | 76 | 2 | 178 | 333 | 148 | 304 | 8.7e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045838.t1 | A0A396J7S7 | 86.2 | 334 | 41 | 2 | 1 | 333 | 1 | 330 | 7.4e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene045838.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045838.t1 | MTR_0011s0260 | 88.462 | 338 | 30 | 4 | 1 | 333 | 1 | 334 | 0.0 | 551 |
| MS.gene045838.t1 | MTR_0011s0210 | 87.574 | 338 | 33 | 4 | 1 | 333 | 1 | 334 | 0.0 | 542 |
| MS.gene045838.t1 | MTR_6g047570 | 70.833 | 336 | 69 | 5 | 1 | 333 | 1 | 310 | 1.15e-161 | 455 |
| MS.gene045838.t1 | MTR_4g067010 | 65.373 | 335 | 74 | 7 | 1 | 333 | 1 | 295 | 1.07e-136 | 391 |
| MS.gene045838.t1 | MTR_4g066460 | 63.610 | 349 | 65 | 9 | 1 | 333 | 1 | 303 | 1.61e-126 | 365 |
| MS.gene045838.t1 | MTR_4g066380 | 63.506 | 348 | 64 | 6 | 1 | 333 | 1 | 300 | 3.96e-125 | 362 |
| MS.gene045838.t1 | MTR_0246s0020 | 59.669 | 362 | 108 | 9 | 1 | 333 | 1 | 353 | 3.14e-123 | 359 |
| MS.gene045838.t1 | MTR_0246s0020 | 59.669 | 362 | 108 | 9 | 1 | 333 | 1 | 353 | 3.92e-123 | 358 |
| MS.gene045838.t1 | MTR_6g047550 | 70.039 | 257 | 57 | 4 | 1 | 251 | 1 | 243 | 2.17e-114 | 332 |
| MS.gene045838.t1 | MTR_0250s0040 | 54.430 | 316 | 62 | 5 | 23 | 333 | 1 | 239 | 1.34e-103 | 305 |
| MS.gene045838.t1 | MTR_4g098035 | 48.980 | 343 | 138 | 10 | 1 | 333 | 1 | 316 | 2.08e-89 | 271 |
| MS.gene045838.t1 | MTR_0246s0050 | 48.101 | 316 | 127 | 10 | 28 | 333 | 7 | 295 | 9.90e-79 | 243 |
| MS.gene045838.t1 | MTR_5g014560 | 40.909 | 330 | 120 | 11 | 17 | 333 | 15 | 282 | 5.99e-58 | 189 |
| MS.gene045838.t1 | MTR_5g014520 | 39.701 | 335 | 138 | 8 | 17 | 333 | 20 | 308 | 1.45e-54 | 181 |
| MS.gene045838.t1 | MTR_2g010450 | 46.369 | 179 | 89 | 3 | 162 | 333 | 151 | 329 | 1.62e-41 | 148 |
| MS.gene045838.t1 | MTR_5g014600 | 34.402 | 343 | 173 | 10 | 10 | 333 | 4 | 313 | 3.74e-41 | 146 |
| MS.gene045838.t1 | MTR_4g097920 | 38.723 | 235 | 125 | 4 | 115 | 333 | 58 | 289 | 1.06e-39 | 142 |
| MS.gene045838.t1 | MTR_4g097920 | 38.723 | 235 | 125 | 4 | 115 | 333 | 73 | 304 | 1.88e-39 | 142 |
| MS.gene045838.t1 | MTR_4g097940 | 38.723 | 235 | 125 | 4 | 115 | 333 | 73 | 304 | 2.14e-38 | 139 |
| MS.gene045838.t1 | MTR_4g009540 | 37.991 | 229 | 121 | 4 | 112 | 333 | 95 | 309 | 2.18e-38 | 139 |
| MS.gene045838.t1 | MTR_4g009110 | 38.767 | 227 | 122 | 4 | 114 | 333 | 112 | 328 | 3.22e-38 | 139 |
| MS.gene045838.t1 | MTR_4g009540 | 37.991 | 229 | 121 | 4 | 112 | 333 | 95 | 309 | 4.66e-38 | 138 |
| MS.gene045838.t1 | MTR_2g104550 | 38.426 | 216 | 123 | 4 | 121 | 333 | 82 | 290 | 2.07e-36 | 134 |
| MS.gene045838.t1 | MTR_4g092700 | 45.062 | 162 | 89 | 0 | 172 | 333 | 148 | 309 | 2.91e-36 | 134 |
| MS.gene045838.t1 | MTR_2g104490 | 37.727 | 220 | 121 | 6 | 127 | 333 | 70 | 286 | 6.11e-36 | 132 |
| MS.gene045838.t1 | MTR_2g104490 | 37.727 | 220 | 121 | 6 | 127 | 333 | 70 | 286 | 7.93e-36 | 132 |
| MS.gene045838.t1 | MTR_5g014640 | 36.797 | 231 | 132 | 4 | 114 | 333 | 75 | 302 | 1.90e-35 | 131 |
| MS.gene045838.t1 | MTR_4g097950 | 47.977 | 173 | 75 | 4 | 172 | 333 | 60 | 228 | 5.43e-35 | 128 |
| MS.gene045838.t1 | MTR_8g009020 | 32.867 | 286 | 149 | 7 | 84 | 333 | 23 | 301 | 9.20e-35 | 129 |
| MS.gene045838.t1 | MTR_8g069740 | 40.116 | 172 | 98 | 3 | 166 | 333 | 95 | 265 | 7.88e-34 | 125 |
| MS.gene045838.t1 | MTR_7g080780 | 40.462 | 173 | 93 | 2 | 161 | 333 | 132 | 294 | 3.37e-31 | 120 |
| MS.gene045838.t1 | MTR_7g080780 | 40.462 | 173 | 93 | 2 | 161 | 333 | 145 | 307 | 4.04e-31 | 120 |
| MS.gene045838.t1 | MTR_2g104560 | 33.333 | 201 | 130 | 3 | 134 | 333 | 6 | 203 | 1.12e-28 | 110 |
| MS.gene045838.t1 | MTR_5g014550 | 52.381 | 126 | 52 | 2 | 212 | 333 | 54 | 175 | 1.55e-28 | 109 |
| MS.gene045838.t1 | MTR_2g104650 | 34.274 | 248 | 146 | 5 | 100 | 333 | 3 | 247 | 1.39e-27 | 109 |
| MS.gene045838.t1 | MTR_8g009010 | 31.873 | 251 | 125 | 5 | 92 | 333 | 37 | 250 | 1.47e-25 | 104 |
| MS.gene045838.t1 | MTR_2g104530 | 39.474 | 152 | 86 | 3 | 183 | 333 | 106 | 252 | 4.29e-24 | 100 |
| MS.gene045838.t1 | MTR_2g104500 | 37.209 | 172 | 94 | 5 | 170 | 333 | 85 | 250 | 1.07e-22 | 95.9 |
| MS.gene045838.t1 | MTR_2g104590 | 34.524 | 168 | 85 | 4 | 170 | 333 | 56 | 202 | 1.99e-21 | 91.7 |
| MS.gene045838.t1 | MTR_1g072320 | 33.103 | 145 | 83 | 3 | 182 | 315 | 470 | 611 | 1.26e-18 | 87.0 |
| MS.gene045838.t1 | MTR_5g058600 | 51.765 | 85 | 12 | 1 | 246 | 330 | 34 | 89 | 2.45e-17 | 77.0 |
| MS.gene045838.t1 | MTR_8g067280 | 33.939 | 165 | 95 | 3 | 168 | 318 | 445 | 609 | 2.84e-17 | 83.2 |
| MS.gene045838.t1 | MTR_8g024790 | 33.088 | 136 | 82 | 3 | 182 | 311 | 291 | 423 | 1.40e-15 | 77.8 |
| MS.gene045838.t1 | MTR_4g009420 | 34.559 | 136 | 57 | 2 | 205 | 333 | 65 | 175 | 1.93e-15 | 74.3 |
| MS.gene045838.t1 | MTR_5g030430 | 32.402 | 179 | 79 | 6 | 168 | 318 | 476 | 640 | 2.29e-15 | 77.4 |
| MS.gene045838.t1 | MTR_7g451650 | 34.884 | 129 | 74 | 2 | 205 | 333 | 57 | 175 | 4.02e-15 | 73.2 |
| MS.gene045838.t1 | MTR_7g451650 | 34.884 | 129 | 74 | 2 | 205 | 333 | 57 | 175 | 5.77e-15 | 72.8 |
| MS.gene045838.t1 | MTR_4g009420 | 34.559 | 136 | 57 | 2 | 205 | 333 | 65 | 175 | 6.10e-15 | 72.8 |
| MS.gene045838.t1 | MTR_8g064700 | 25.946 | 185 | 110 | 4 | 161 | 331 | 227 | 398 | 8.14e-14 | 72.0 |
| MS.gene045838.t1 | MTR_4g009510 | 34.667 | 150 | 70 | 5 | 193 | 333 | 53 | 183 | 1.14e-13 | 69.3 |
| MS.gene045838.t1 | MTR_7g117670 | 52.381 | 63 | 26 | 1 | 179 | 237 | 395 | 457 | 4.17e-13 | 70.5 |
| MS.gene045838.t1 | MTR_8g027495 | 47.692 | 65 | 34 | 0 | 182 | 246 | 458 | 522 | 5.48e-13 | 70.1 |
| MS.gene045838.t1 | MTR_7g050350 | 33.333 | 123 | 72 | 2 | 211 | 333 | 1 | 113 | 5.55e-13 | 65.9 |
| MS.gene045838.t1 | MTR_7g451650 | 33.333 | 123 | 72 | 2 | 211 | 333 | 1 | 113 | 5.55e-13 | 65.9 |
| MS.gene045838.t1 | MTR_7g096350 | 43.333 | 90 | 42 | 2 | 155 | 235 | 319 | 408 | 6.30e-13 | 69.7 |
| MS.gene045838.t1 | MTR_3g030700 | 30.178 | 169 | 107 | 3 | 173 | 333 | 187 | 352 | 1.18e-12 | 68.6 |
| MS.gene045838.t1 | MTR_8g024770 | 34.188 | 117 | 67 | 3 | 182 | 291 | 279 | 392 | 1.44e-12 | 68.6 |
| MS.gene045838.t1 | MTR_1g112680 | 26.606 | 218 | 128 | 6 | 133 | 318 | 264 | 481 | 2.77e-12 | 67.8 |
| MS.gene045838.t1 | MTR_8g098275 | 39.726 | 73 | 44 | 0 | 174 | 246 | 393 | 465 | 8.48e-11 | 63.5 |
| MS.gene045838.t1 | MTR_8g098275 | 40.278 | 72 | 43 | 0 | 174 | 245 | 300 | 371 | 8.65e-11 | 63.2 |
| MS.gene045838.t1 | MTR_8g098275 | 40.278 | 72 | 43 | 0 | 174 | 245 | 236 | 307 | 8.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045838.t1 | AT4G37850 | 47.647 | 170 | 86 | 2 | 166 | 333 | 136 | 304 | 9.36e-40 | 143 |
| MS.gene045838.t1 | AT4G37850 | 47.647 | 170 | 86 | 2 | 166 | 333 | 136 | 304 | 9.36e-40 | 143 |
| MS.gene045838.t1 | AT2G22750 | 47.977 | 173 | 84 | 2 | 166 | 333 | 110 | 281 | 2.21e-34 | 128 |
| MS.gene045838.t1 | AT2G22750 | 47.977 | 173 | 84 | 2 | 166 | 333 | 110 | 281 | 2.23e-34 | 128 |
| MS.gene045838.t1 | AT2G22750 | 47.977 | 173 | 84 | 2 | 166 | 333 | 138 | 309 | 2.90e-34 | 128 |
| MS.gene045838.t1 | AT2G22750 | 47.977 | 173 | 84 | 2 | 166 | 333 | 138 | 309 | 3.42e-34 | 128 |
| MS.gene045838.t1 | AT2G22750 | 47.977 | 173 | 84 | 2 | 166 | 333 | 134 | 305 | 3.46e-34 | 128 |
| MS.gene045838.t1 | AT2G22760 | 34.066 | 273 | 142 | 6 | 86 | 333 | 14 | 273 | 5.11e-34 | 126 |
| MS.gene045838.t1 | AT2G22760 | 34.066 | 273 | 142 | 6 | 86 | 333 | 14 | 273 | 8.13e-34 | 126 |
| MS.gene045838.t1 | AT2G22770 | 32.922 | 243 | 109 | 7 | 120 | 333 | 81 | 298 | 2.00e-27 | 109 |
| MS.gene045838.t1 | AT5G46760 | 35.556 | 180 | 93 | 7 | 151 | 315 | 388 | 559 | 6.20e-18 | 85.1 |
| MS.gene045838.t1 | AT4G17880 | 35.802 | 162 | 86 | 5 | 168 | 315 | 399 | 556 | 1.56e-17 | 84.0 |
| MS.gene045838.t1 | AT1G32640 | 32.704 | 159 | 95 | 4 | 168 | 318 | 435 | 589 | 1.38e-16 | 81.3 |
| MS.gene045838.t1 | AT1G01260 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.45e-14 | 75.1 |
| MS.gene045838.t1 | AT1G01260 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.45e-14 | 75.1 |
| MS.gene045838.t1 | AT1G01260 | 29.091 | 165 | 91 | 3 | 171 | 331 | 418 | 560 | 1.45e-14 | 75.1 |
| MS.gene045838.t1 | AT1G63650 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 1.74e-14 | 74.7 |
| MS.gene045838.t1 | AT1G63650 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 1.74e-14 | 74.7 |
| MS.gene045838.t1 | AT1G63650 | 29.825 | 171 | 93 | 5 | 182 | 330 | 405 | 570 | 1.74e-14 | 74.7 |
| MS.gene045838.t1 | AT2G46510 | 45.000 | 80 | 39 | 2 | 168 | 244 | 378 | 455 | 8.03e-14 | 72.8 |
| MS.gene045838.t1 | AT4G16430 | 46.154 | 78 | 39 | 1 | 168 | 242 | 303 | 380 | 1.45e-13 | 71.6 |
| MS.gene045838.t1 | AT4G09820 | 33.333 | 126 | 54 | 3 | 183 | 303 | 364 | 464 | 2.76e-13 | 70.9 |
| MS.gene045838.t1 | AT5G41315 | 28.495 | 186 | 100 | 6 | 172 | 330 | 437 | 616 | 1.43e-12 | 68.9 |
| MS.gene045838.t1 | AT5G41315 | 28.495 | 186 | 100 | 6 | 172 | 330 | 440 | 619 | 1.48e-12 | 68.9 |
| MS.gene045838.t1 | AT5G41315 | 28.495 | 186 | 100 | 6 | 172 | 330 | 432 | 611 | 1.55e-12 | 68.9 |
| MS.gene045838.t1 | AT4G00870 | 33.036 | 112 | 72 | 1 | 183 | 291 | 250 | 361 | 2.76e-11 | 64.7 |
| MS.gene045838.t1 | AT1G12860 | 30.189 | 159 | 91 | 5 | 183 | 328 | 268 | 419 | 9.88e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATATGAAAAAAAAAAAT+AGG | - | 17162:24145-24164 | MS.gene045838:intergenic | 10.0% |
| !! | GTATTTATTCAATTTAAAAA+GGG | - | 17162:22954-22973 | MS.gene045838:intergenic | 10.0% |
| !! | TGTATTTATTCAATTTAAAA+AGG | - | 17162:22955-22974 | MS.gene045838:intergenic | 10.0% |
| !! | TTAAATAATAAAAAATGTGA+AGG | + | 17162:22617-22636 | MS.gene045838:intron | 10.0% |
| !! | ATAAATACAACAACAAAAAA+TGG | + | 17162:22966-22985 | MS.gene045838:intron | 15.0% |
| !! | ATTTAATATGTCATAAGAAA+TGG | + | 17162:23018-23037 | MS.gene045838:intron | 15.0% |
| !!! | ATAGTTAGACTTTTTTAAAA+TGG | - | 17162:22719-22738 | MS.gene045838:intergenic | 15.0% |
| !! | TTGTGTAAAATTATGTTAGA+TGG | + | 17162:24181-24200 | MS.gene045838:intron | 20.0% |
| !!! | AACATGTAAAAACATTCTTT+TGG | - | 17162:22844-22863 | MS.gene045838:intergenic | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | - | 17162:24042-24061 | MS.gene045838:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGAGTTTA+AGG | - | 17162:23852-23871 | MS.gene045838:intergenic | 20.0% |
| ! | AATTTGTCCATGACAATATT+TGG | - | 17162:22794-22813 | MS.gene045838:intergenic | 25.0% |
| ! | ACTTAGGGATATTATGTATT+AGG | - | 17162:22432-22451 | MS.gene045838:intergenic | 25.0% |
| ! | ATTTAGTGATGAAACAAAGT+TGG | + | 17162:23643-23662 | MS.gene045838:CDS | 25.0% |
| ! | ATTTGTCCATGACAATATTT+GGG | - | 17162:22793-22812 | MS.gene045838:intergenic | 25.0% |
| ! | CAATTATTAAGAATATCGAC+AGG | + | 17162:22492-22511 | MS.gene045838:intron | 25.0% |
| ! | CGATATTGATAAGACAATTA+TGG | + | 17162:23679-23698 | MS.gene045838:CDS | 25.0% |
| ! | CGTAGTTAATCACAAATAAA+TGG | + | 17162:23407-23426 | MS.gene045838:intron | 25.0% |
| ! | TGCACATGTTAATAAATTCA+AGG | - | 17162:23351-23370 | MS.gene045838:intergenic | 25.0% |
| ! | TTATTATTGAAGTGTGTTAG+AGG | + | 17162:23159-23178 | MS.gene045838:intron | 25.0% |
| ! | TTATTTAAGAGATATTGCCA+GGG | - | 17162:23202-23221 | MS.gene045838:intergenic | 25.0% |
| !! | TAAACAACAACGTTTAACTT+CGG | + | 17162:23592-23611 | MS.gene045838:CDS | 25.0% |
| !! | TAGGGAAATATATGTTGATT+CGG | + | 17162:24414-24433 | MS.gene045838:CDS | 25.0% |
| !! | TGAAGAAAGTTTTTGTGTAA+AGG | - | 17162:23744-23763 | MS.gene045838:intergenic | 25.0% |
| !!! | AAATCGAAGCAAAAGTATTA+GGG | + | 17162:24396-24415 | MS.gene045838:CDS | 25.0% |
| !!! | ACGGTAAACAATTCATTTTT+CGG | + | 17162:22590-22609 | MS.gene045838:intron | 25.0% |
| !!! | AGACTTTTTTAAAATGGATC+CGG | - | 17162:22713-22732 | MS.gene045838:intergenic | 25.0% |
| !!! | ATCTATACTGTTTTAGAGAT+AGG | - | 17162:23048-23067 | MS.gene045838:intergenic | 25.0% |
| !!! | ATTTTGTTTTGAGTTTAAGG+TGG | - | 17162:23849-23868 | MS.gene045838:intergenic | 25.0% |
| !!! | GGGACTTTTAGTTAAAATTA+TGG | + | 17162:24457-24476 | MS.gene045838:CDS | 25.0% |
| !!! | GTTGTTGTTTATTTTGTTCT+TGG | - | 17162:23583-23602 | MS.gene045838:intergenic | 25.0% |
| !!! | GTTTTCTTCTGTACTTTTTA+CGG | + | 17162:22571-22590 | MS.gene045838:intron | 25.0% |
| !!! | TATCTGATTTGGTAAGAAAA+TGG | + | 17162:22248-22267 | MS.gene045838:intron | 25.0% |
| !!! | TATTGTACCTTTTTAAGGTT+GGG | - | 17162:24037-24056 | MS.gene045838:intergenic | 25.0% |
| !!! | TCTATACTGTTTTAGAGATA+GGG | - | 17162:23047-23066 | MS.gene045838:intergenic | 25.0% |
| !!! | TCTCACTAGTGTTTTTTTAT+AGG | - | 17162:23293-23312 | MS.gene045838:intergenic | 25.0% |
| !!! | TTAATTTGTTGACCTATTAC+CGG | + | 17162:22691-22710 | MS.gene045838:intron | 25.0% |
| !!! | TTATTGTACCTTTTTAAGGT+TGG | - | 17162:24038-24057 | MS.gene045838:intergenic | 25.0% |
| !!! | TTCTTATTTTCCAATTCAGT+TGG | - | 17162:23890-23909 | MS.gene045838:intergenic | 25.0% |
| !!! | TTTTGTTTTGAGTTTAAGGT+GGG | - | 17162:23848-23867 | MS.gene045838:intergenic | 25.0% |
| AAATATGAGATGGTCAACTT+AGG | - | 17162:22448-22467 | MS.gene045838:intergenic | 30.0% | |
| AACCTAGCGAAAATTAAAGA+TGG | + | 17162:22989-23008 | MS.gene045838:intron | 30.0% | |
| AAGTTGACCATCTCATATTT+AGG | + | 17162:22448-22467 | MS.gene045838:intron | 30.0% | |
| AATAAAAACAGAGTCACATG+TGG | + | 17162:24289-24308 | MS.gene045838:CDS | 30.0% | |
| AATATGAGATGGTCAACTTA+GGG | - | 17162:22447-22466 | MS.gene045838:intergenic | 30.0% | |
| AATGTATAAAAAAGTGACCC+TGG | + | 17162:23182-23201 | MS.gene045838:intron | 30.0% | |
| ATGAGAACCTAAATATGAGA+TGG | - | 17162:22458-22477 | MS.gene045838:intergenic | 30.0% | |
| CAAAAACCTCAAAAAGCAAA+AGG | + | 17162:23918-23937 | MS.gene045838:CDS | 30.0% | |
| GAGCAATGATAGTAATATCA+AGG | - | 17162:24547-24566 | MS.gene045838:intergenic | 30.0% | |
| GTCAAATCCAGAAAATTGTT+GGG | - | 17162:23825-23844 | MS.gene045838:intergenic | 30.0% | |
| GTTATAAACGTACTACGAAA+TGG | - | 17162:22360-22379 | MS.gene045838:intergenic | 30.0% | |
| GTTATGCTTCTGTATATGAA+CGG | + | 17162:22904-22923 | MS.gene045838:intron | 30.0% | |
| GTTATTTAAGAGATATTGCC+AGG | - | 17162:23203-23222 | MS.gene045838:intergenic | 30.0% | |
| TGACATGTTAGTGTTATACT+TGG | - | 17162:22662-22681 | MS.gene045838:intergenic | 30.0% | |
| TTTGTCCATGACAATATTTG+GGG | - | 17162:22792-22811 | MS.gene045838:intergenic | 30.0% | |
| ! | AAACAACAACGTTTAACTTC+GGG | + | 17162:23593-23612 | MS.gene045838:CDS | 30.0% |
| ! | CGAACACAATTTATTTGTTG+AGG | + | 17162:23490-23509 | MS.gene045838:CDS | 30.0% |
| ! | CTCAACTTGAAATATTTTGC+AGG | - | 17162:22313-22332 | MS.gene045838:intergenic | 30.0% |
| ! | TTTAAAATGGATCCGGTAAT+AGG | - | 17162:22706-22725 | MS.gene045838:intergenic | 30.0% |
| ! | TTTTTCCCCAAATATTGTCA+TGG | + | 17162:22784-22803 | MS.gene045838:intron | 30.0% |
| !! | CAAATCGAAGCAAAAGTATT+AGG | + | 17162:24395-24414 | MS.gene045838:CDS | 30.0% |
| !! | TTCCATCTTTAATTTTCGCT+AGG | - | 17162:22994-23013 | MS.gene045838:intergenic | 30.0% |
| !!! | TTTGTTTTGAGTTTAAGGTG+GGG | - | 17162:23847-23866 | MS.gene045838:intergenic | 30.0% |
| AAAAGGTCTCGTGCTAATAA+TGG | + | 17162:23935-23954 | MS.gene045838:CDS | 35.0% | |
| AACCTGAATTTCCTTGATAC+TGG | + | 17162:23518-23537 | MS.gene045838:CDS | 35.0% | |
| AACTAGTGGTAGGTGAATTT+GGG | - | 17162:23802-23821 | MS.gene045838:intergenic | 35.0% | |
| AGAAAATTGTTGGGAACTAG+TGG | - | 17162:23816-23835 | MS.gene045838:intergenic | 35.0% | |
| AGAGCTAGTTAATAGCTATG+AGG | - | 17162:24076-24095 | MS.gene045838:intergenic | 35.0% | |
| ATCAAGGATTGAATCTCCAA+AGG | - | 17162:24531-24550 | MS.gene045838:intergenic | 35.0% | |
| ATCCAATGTAAGGAACACAA+GGG | + | 17162:24437-24456 | MS.gene045838:CDS | 35.0% | |
| CAAAAGATGGGATTTGAACT+TGG | - | 17162:23772-23791 | MS.gene045838:intergenic | 35.0% | |
| GAGCTAGTTAATAGCTATGA+GGG | - | 17162:24075-24094 | MS.gene045838:intergenic | 35.0% | |
| GGGATATTATGTATTAGGAG+AGG | - | 17162:22427-22446 | MS.gene045838:intergenic | 35.0% | |
| GGTCAAATCCAGAAAATTGT+TGG | - | 17162:23826-23845 | MS.gene045838:intergenic | 35.0% | |
| TAATGGTGAGGATCATATCA+TGG | + | 17162:23952-23971 | MS.gene045838:CDS | 35.0% | |
| TCAAGGATTGAATCTCCAAA+GGG | - | 17162:24530-24549 | MS.gene045838:intergenic | 35.0% | |
| TCTTGTTCCCAACCTTAAAA+AGG | + | 17162:24027-24046 | MS.gene045838:CDS | 35.0% | |
| ! | AACAACAACGTTTAACTTCG+GGG | + | 17162:23594-23613 | MS.gene045838:CDS | 35.0% |
| ! | AATAGCAGTGTTTTACCCTT+TGG | + | 17162:24512-24531 | MS.gene045838:CDS | 35.0% |
| ! | ACTAGTTCCCAACAATTTTC+TGG | + | 17162:23815-23834 | MS.gene045838:CDS | 35.0% |
| ! | GCAGGAAATTTCAAGTGTTA+AGG | - | 17162:22295-22314 | MS.gene045838:intergenic | 35.0% |
| !! | GAAAGAGCTTAAAAAGCGTT+TGG | + | 17162:24241-24260 | MS.gene045838:CDS | 35.0% |
| !!! | TTAACAGTTCCTTTTTTCCC+AGG | + | 17162:23460-23479 | MS.gene045838:intron | 35.0% |
| AATCTTCCACACCAGTATCA+AGG | - | 17162:23532-23551 | MS.gene045838:intergenic | 40.0% | |
| AATTGTGTTCGTCCATTTCC+TGG | - | 17162:23481-23500 | MS.gene045838:intergenic | 40.0% | |
| AATTGTTGGGAACTAGTGGT+AGG | - | 17162:23812-23831 | MS.gene045838:intergenic | 40.0% | |
| ACTAGTGGTAGGTGAATTTG+GGG | - | 17162:23801-23820 | MS.gene045838:intergenic | 40.0% | |
| ACTATTGACCAAGCCATTGA+TGG | + | 17162:23069-23088 | MS.gene045838:intron | 40.0% | |
| ATTGCGCTCATCAAATGATG+AGG | - | 17162:24351-24370 | MS.gene045838:intergenic | 40.0% | |
| ATTGTGTTCGTCCATTTCCT+GGG | - | 17162:23480-23499 | MS.gene045838:intergenic | 40.0% | |
| CACCAGTATCAAGGAAATTC+AGG | - | 17162:23523-23542 | MS.gene045838:intergenic | 40.0% | |
| CATATTACACTGCTCACTGA+TGG | + | 17162:24157-24176 | MS.gene045838:intron | 40.0% | |
| GAACTAGTGGTAGGTGAATT+TGG | - | 17162:23803-23822 | MS.gene045838:intergenic | 40.0% | |
| GAATTTCCTTGATACTGGTG+TGG | + | 17162:23523-23542 | MS.gene045838:CDS | 40.0% | |
| GATCCAATGTAAGGAACACA+AGG | + | 17162:24436-24455 | MS.gene045838:CDS | 40.0% | |
| TGCAAGAGCAATGAAGCTTT+GGG | - | 17162:24005-24024 | MS.gene045838:intergenic | 40.0% | |
| TTCAGTGTCTCCAACTGAAT+TGG | + | 17162:23877-23896 | MS.gene045838:CDS | 40.0% | |
| ! | GGACAAGTTTTCTGTACTAG+TGG | + | 17162:24202-24221 | MS.gene045838:CDS | 40.0% |
| !! | GTTGATTCGGATCCAATGTA+AGG | + | 17162:24427-24446 | MS.gene045838:CDS | 40.0% |
| !!! | ACGAGACCTTTTGCTTTTTG+AGG | - | 17162:23927-23946 | MS.gene045838:intergenic | 40.0% |
| !!! | GTTCCTTTTTTCCCAGGAAA+TGG | + | 17162:23466-23485 | MS.gene045838:intron | 40.0% |
| CAGCAGCTGGTTATCTGATT+TGG | + | 17162:22237-22256 | MS.gene045838:CDS | 45.0% | |
| CGTCCATTTCCTGGGAAAAA+AGG | - | 17162:23472-23491 | MS.gene045838:intergenic | 45.0% | |
| CTAGTGGTAGGTGAATTTGG+GGG | - | 17162:23800-23819 | MS.gene045838:intergenic | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | - | 17162:24006-24025 | MS.gene045838:intergenic | 45.0% | |
| GTCCCTTGTGTTCCTTACAT+TGG | - | 17162:24442-24461 | MS.gene045838:intergenic | 45.0% | |
| GTCTCGTGCTAATAATGGTG+AGG | + | 17162:23940-23959 | MS.gene045838:CDS | 45.0% | |
| TAGTGGTAGGTGAATTTGGG+GGG | - | 17162:23799-23818 | MS.gene045838:intergenic | 45.0% | |
| TCTGTCTCATCTCAAAGCTC+TGG | - | 17162:23098-23117 | MS.gene045838:intergenic | 45.0% | |
| ! | AAAGCTCTGGTGTCCATCAA+TGG | - | 17162:23085-23104 | MS.gene045838:intergenic | 45.0% |
| !! | AGGAGAGGCATTTGTATGTG+AGG | - | 17162:22412-22431 | MS.gene045838:intergenic | 45.0% |
| !! | GAGCGCAATGAAAGTGTTGT+TGG | + | 17162:24362-24381 | MS.gene045838:CDS | 45.0% |
| ACGTATCATCAAGCAGCAGC+TGG | + | 17162:22224-22243 | MS.gene045838:CDS | 50.0% | |
| AGGAATCATCATCGCTGCAG+AGG | - | 17162:24331-24350 | MS.gene045838:intergenic | 50.0% | |
| GAGATGAGACAGATCGATCG+CGG | + | 17162:23105-23124 | MS.gene045838:intron | 50.0% | |
| GTTGCTGAGAGTTGTGCAAG+TGG | - | 17162:23621-23640 | MS.gene045838:intergenic | 50.0% | |
| TCTGGTGTCCATCAATGGCT+TGG | - | 17162:23080-23099 | MS.gene045838:intergenic | 50.0% | |
| TTGGGGGGCTGTCAAAAGAT+GGG | - | 17162:23784-23803 | MS.gene045838:intergenic | 50.0% | |
| TTTGGGGGGCTGTCAAAAGA+TGG | - | 17162:23785-23804 | MS.gene045838:intergenic | 50.0% | |
| ATCGCTGCAGAGGTCTGGTT+TGG | - | 17162:24321-24340 | MS.gene045838:intergenic | 55.0% | |
| TCATCATCGCTGCAGAGGTC+TGG | - | 17162:24326-24345 | MS.gene045838:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 17162 | gene | 22196 | 24568 | 22196 | ID=MS.gene045838 |
| 17162 | mRNA | 22196 | 24568 | 22196 | ID=MS.gene045838.t1;Parent=MS.gene045838 |
| 17162 | exon | 22196 | 22258 | 22196 | ID=MS.gene045838.t1.exon1;Parent=MS.gene045838.t1 |
| 17162 | CDS | 22196 | 22258 | 22196 | ID=cds.MS.gene045838.t1;Parent=MS.gene045838.t1 |
| 17162 | exon | 23482 | 24048 | 23482 | ID=MS.gene045838.t1.exon2;Parent=MS.gene045838.t1 |
| 17162 | CDS | 23482 | 24048 | 23482 | ID=cds.MS.gene045838.t1;Parent=MS.gene045838.t1 |
| 17162 | exon | 24200 | 24568 | 24200 | ID=MS.gene045838.t1.exon3;Parent=MS.gene045838.t1 |
| 17162 | CDS | 24200 | 24568 | 24200 | ID=cds.MS.gene045838.t1;Parent=MS.gene045838.t1 |
| Gene Sequence |
| Protein sequence |
