AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045953.t1 MTR_8g467340 96.096 333 11 2 1 332 60 391 0.0 651
MS.gene045953.t1 MTR_7g010300 39.759 332 120 8 3 332 86 339 9.00e-58 190
MS.gene045953.t1 MTR_6g012280 72.131 61 17 0 4 64 90 150 6.78e-25 103
MS.gene045953.t1 MTR_6g073013 57.746 71 29 1 213 282 101 171 5.59e-23 94.4
MS.gene045953.t1 MTR_6g073013 53.521 71 27 2 5 75 19 83 2.51e-17 79.0
MS.gene045953.t1 MTR_4g134580 60.938 64 25 0 213 276 284 347 1.64e-22 97.1
MS.gene045953.t1 MTR_4g134580 62.963 54 18 1 5 58 113 164 7.04e-16 78.2
MS.gene045953.t1 MTR_1g077020 60.317 63 25 0 213 275 124 186 9.10e-22 91.3
MS.gene045953.t1 MTR_1g077020 64.407 59 17 2 1 58 5 60 1.86e-20 87.8
MS.gene045953.t1 MTR_5g032600 55.696 79 35 0 197 275 193 271 1.86e-21 92.4
MS.gene045953.t1 MTR_5g032600 46.154 104 51 3 5 106 78 178 2.93e-19 86.3
MS.gene045953.t1 MTR_5g020510 56.250 64 28 0 213 276 233 296 3.30e-20 89.4
MS.gene045953.t1 MTR_5g020510 54.545 66 21 2 3 61 97 160 4.59e-18 83.6
MS.gene045953.t1 MTR_3g100650 53.968 63 29 0 213 275 211 273 2.12e-19 87.0
MS.gene045953.t1 MTR_3g100650 59.259 54 20 1 3 56 78 129 6.86e-15 73.9
MS.gene045953.t1 MTR_2g076780 40.426 94 55 1 178 271 140 232 1.04e-18 84.3
MS.gene045953.t1 MTR_2g076780 61.538 52 18 1 5 56 37 86 1.28e-15 75.5
MS.gene045953.t1 MTR_8g069080 54.839 62 28 0 210 271 202 263 1.35e-17 81.6
MS.gene045953.t1 MTR_8g069080 63.462 52 17 1 5 56 69 118 3.64e-16 77.8
MS.gene045953.t1 MTR_8g051480 49.296 71 35 1 201 271 55 124 1.36e-17 78.2
MS.gene045953.t1 MTR_6g012220 62.963 54 14 1 2 55 18 65 9.90e-17 74.3
MS.gene045953.t1 MTR_3g039810 56.667 60 24 1 3 62 18 75 2.77e-16 73.2
MS.gene045953.t1 MTR_8g069380 46.377 69 37 0 203 271 42 110 1.08e-15 72.8
MS.gene045953.t1 MTR_5g065440 55.556 54 22 1 3 56 56 107 2.48e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045953.t1 AT3G28920 41.776 304 101 7 3 306 50 277 2.11e-53 178
MS.gene045953.t1 AT1G69600 38.768 276 86 7 1 276 27 219 4.06e-51 170
MS.gene045953.t1 AT5G15210 81.818 55 10 0 2 56 53 107 1.75e-26 106
MS.gene045953.t1 AT5G15210 64.407 59 21 0 213 271 179 237 5.60e-22 94.0
MS.gene045953.t1 AT5G60480 72.881 59 16 0 1 59 33 91 4.08e-24 98.6
MS.gene045953.t1 AT5G60480 52.459 61 29 0 209 269 143 203 8.90e-17 78.6
MS.gene045953.t1 AT1G75240 61.905 63 24 0 210 272 237 299 2.05e-22 95.9
MS.gene045953.t1 AT1G75240 64.815 54 17 1 3 56 74 125 9.77e-17 80.1
MS.gene045953.t1 AT5G39760 77.193 57 13 0 1 57 52 108 8.60e-22 94.7
MS.gene045953.t1 AT1G14440 66.667 57 19 0 213 269 218 274 9.57e-22 94.0
MS.gene045953.t1 AT1G14440 54.545 66 28 1 2 67 87 150 1.08e-17 82.8
MS.gene045953.t1 AT1G14440 66.667 57 19 0 213 269 218 274 9.57e-22 94.0
MS.gene045953.t1 AT1G14440 54.545 66 28 1 2 67 87 150 1.08e-17 82.8
MS.gene045953.t1 AT4G24660 54.545 77 33 1 201 275 143 219 1.59e-21 91.7
MS.gene045953.t1 AT4G24660 62.500 56 19 1 3 58 47 100 2.68e-18 82.8
MS.gene045953.t1 AT4G24660 56.164 73 30 1 201 271 143 215 2.07e-21 91.7
MS.gene045953.t1 AT4G24660 62.500 56 19 1 3 58 47 100 1.98e-18 83.2
MS.gene045953.t1 AT2G02540 46.000 100 36 3 213 310 222 305 2.83e-21 92.8
MS.gene045953.t1 AT2G02540 60.345 58 21 1 1 58 83 138 8.83e-19 85.9
MS.gene045953.t1 AT2G02540 46.000 100 36 3 213 310 222 305 2.83e-21 92.8
MS.gene045953.t1 AT2G02540 60.345 58 21 1 1 58 83 138 8.83e-19 85.9
MS.gene045953.t1 AT2G18350 60.317 63 25 0 213 275 198 260 7.83e-21 90.5
MS.gene045953.t1 AT2G18350 65.385 52 16 1 5 56 82 131 5.14e-15 74.3
MS.gene045953.t1 AT5G65410 52.542 59 28 0 213 271 191 249 7.85e-19 85.5
MS.gene045953.t1 AT5G65410 62.963 54 18 1 3 56 73 124 2.63e-17 81.3
MS.gene045953.t1 AT1G74660 61.111 54 19 1 3 56 37 88 2.11e-17 76.6
MS.gene045953.t1 AT3G50890 56.140 57 25 0 218 274 186 242 1.14e-16 79.0
MS.gene045953.t1 AT3G50890 50.000 70 26 2 3 65 58 125 5.35e-14 71.2
MS.gene045953.t1 AT1G74660 61.111 54 19 1 3 56 37 88 1.34e-16 74.7
MS.gene045953.t1 AT3G28917 52.308 65 30 1 3 67 31 94 4.67e-16 73.2
MS.gene045953.t1 AT1G18835 61.111 54 16 1 3 56 24 72 2.29e-15 70.9
MS.gene045953.t1 AT5G42780 65.385 52 14 2 5 56 64 111 2.23e-13 69.3
MS.gene045953.t1 AT5G42780 45.000 60 33 0 214 273 180 239 2.15e-12 66.6
MS.gene045953.t1 AT1G14687 50.980 51 18 1 5 55 7 50 2.38e-12 64.7

Find 80 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCATGTTTCTTCTGTTAA+TGG 0.168810 8.3:-43573267 MS.gene045953:CDS
GGGCTTGTGCTTTGACTAAT+TGG 0.181458 8.3:+43573903 None:intergenic
GGTGATGATGGGCTTGAAAT+TGG 0.322434 8.3:+43573846 None:intergenic
CTTGGGCTTGTACTTTGACT+TGG 0.355993 8.3:+43573882 None:intergenic
TCAGAATCTGATGTTGGAAT+TGG 0.361684 8.3:-43573402 MS.gene045953:CDS
GCAGCACATTTGAGGGATCT+TGG 0.362520 8.3:+43574119 None:intergenic
TTTGAGGGATCTTGGGTCAT+TGG 0.365376 8.3:+43574127 None:intergenic
TTGAGGGATCTTGGGTCATT+GGG 0.378829 8.3:+43574128 None:intergenic
GATAAGAATAATGCTGATAA+TGG 0.396329 8.3:-43573348 MS.gene045953:CDS
TTGGGCTTGTACTTTGACTT+GGG 0.420438 8.3:+43573883 None:intergenic
GAGAGTGGTGGTGGTGATGA+TGG 0.424010 8.3:+43573834 None:intergenic
GCTCTTGTGGCTCACGGCGG+TGG 0.424923 8.3:+43574075 None:intergenic
GGTGGTGGTGGTTGTGGTGG+TGG 0.428852 8.3:+43573948 None:intergenic
AAAATTAAACACTAATTAAG+AGG 0.431684 8.3:+43573239 None:intergenic
CACGACCTCGACAACCACTA+TGG 0.432372 8.3:-43574039 MS.gene045953:CDS
CAGCACATTTGAGGGATCTT+GGG 0.434610 8.3:+43574120 None:intergenic
CTAGGTGGACATGCACTTGA+TGG 0.436606 8.3:-43574185 MS.gene045953:CDS
CATAACAACAACACAAGTAG+TGG 0.439261 8.3:-43573618 MS.gene045953:CDS
GGTAACGGTGGTGGTGGTTG+TGG 0.441537 8.3:+43573942 None:intergenic
GATGGGCTTGAAATTGGACT+TGG 0.452481 8.3:+43573852 None:intergenic
AATTGAGATTCCTTTGAAGA+TGG 0.453296 8.3:+43573688 None:intergenic
TTGGACTTGGGCTATGACTT+GGG 0.456233 8.3:+43573865 None:intergenic
GCAAAAGAGTGATGATGGTT+TGG 0.463952 8.3:-43573514 MS.gene045953:CDS
ATTGGACTTGGGCTATGACT+TGG 0.471642 8.3:+43573864 None:intergenic
GGTGGTGGAACTGTTGTTGA+AGG 0.472822 8.3:+43573963 None:intergenic
GCTGAAGAGTGATGATAAGA+AGG 0.480903 8.3:+43573801 None:intergenic
AACGGTGGTGGTGGTTGTGG+TGG 0.489441 8.3:+43573945 None:intergenic
CAGAAATTCTGCAATGACAT+TGG 0.496065 8.3:-43573489 MS.gene045953:CDS
GCCACAAGCAGCACATTTGA+GGG 0.496943 8.3:+43574112 None:intergenic
GGCGCTGACTGTTGCCATAG+TGG 0.500941 8.3:+43574025 None:intergenic
AGAGTGGTGGTGGTGATGAT+GGG 0.502065 8.3:+43573835 None:intergenic
CATATGATGAATGACATTGT+TGG 0.516395 8.3:+43573311 None:intergenic
AAGAAATCAGAATCTGATGT+TGG 0.519643 8.3:-43573408 MS.gene045953:CDS
TGTGGCAGTGGTAACGGTGG+TGG 0.520746 8.3:+43573933 None:intergenic
ATTCATCATATGAATGAAGA+TGG 0.520970 8.3:-43573300 MS.gene045953:CDS
GGCAGTGGTAACGGTGGTGG+TGG 0.524973 8.3:+43573936 None:intergenic
GTGCTGCTTGTGGCTGTCAT+CGG 0.528504 8.3:-43574103 MS.gene045953:CDS
AGCCACAAGCAGCACATTTG+AGG 0.529295 8.3:+43574111 None:intergenic
AAAATGCAAAAGAGTGATGA+TGG 0.531947 8.3:-43573519 MS.gene045953:CDS
TCATTGGGATTGAGAGATGA+TGG 0.533214 8.3:+43574143 None:intergenic
GTGTAGATACAGCTAAGAAA+AGG 0.535424 8.3:+43573990 None:intergenic
TATGATTGTTGCTGTTGTTG+TGG 0.538470 8.3:+43573637 None:intergenic
CATCAAGTGCATGTCCACCT+AGG 0.550202 8.3:+43574186 None:intergenic
ACCATCAAAACCATCTTCAA+AGG 0.550321 8.3:-43573698 MS.gene045953:CDS
GGATGTGCTCTTGTGGCTCA+CGG 0.553701 8.3:+43574069 None:intergenic
ATCAAGTGCATGTCCACCTA+GGG 0.558096 8.3:+43574187 None:intergenic
GCTGATAATGGTAATGATGA+TGG 0.572134 8.3:-43573336 MS.gene045953:CDS
CCACGATGTGGCAGTGGTAA+CGG 0.572478 8.3:+43573927 None:intergenic
TCCCTCAAATGTGCTGCTTG+TGG 0.575497 8.3:-43574113 MS.gene045953:CDS
CATAGTGGTTGTCGAGGTCG+TGG 0.576505 8.3:+43574040 None:intergenic
TAGATACAGCTAAGAAAAGG+TGG 0.577392 8.3:+43573993 None:intergenic
ATTGGACCACGATGTGGCAG+TGG 0.581906 8.3:+43573921 None:intergenic
GGTAAATGTGAGAGTGGTGG+TGG 0.585939 8.3:+43573825 None:intergenic
GAAGAGTGATGATAAGAAGG+TGG 0.597173 8.3:+43573804 None:intergenic
ATGGGCTTGAAATTGGACTT+GGG 0.599703 8.3:+43573853 None:intergenic
AATGACATTGGTGTTTCTAG+AGG 0.607705 8.3:-43573477 MS.gene045953:CDS
CCAAGAGCTAAAAGCATGTG+AGG 0.612524 8.3:+43573777 None:intergenic
TTCTTTGTAAGAAACAACCA+TGG 0.618488 8.3:+43574232 None:intergenic
ATAACAACAACACAAGTAGT+GGG 0.619615 8.3:-43573617 MS.gene045953:CDS
GAAGGTGGTAAATGTGAGAG+TGG 0.625404 8.3:+43573819 None:intergenic
GGACATGCACTTGATGGATG+TGG 0.627027 8.3:-43574179 MS.gene045953:CDS
GAGCAGAAAGAGAAGATGCA+TGG 0.627308 8.3:-43573564 MS.gene045953:CDS
TTGTCGAGGTCGTGGTGGTG+AGG 0.627359 8.3:+43574048 None:intergenic
TGATCATGATCAGAGTGTTG+TGG 0.633373 8.3:+43573732 None:intergenic
GTGGTGAGGATGTGCTCTTG+TGG 0.640303 8.3:+43574062 None:intergenic
TCTTTGTAAGAAACAACCAT+GGG 0.642323 8.3:+43574233 None:intergenic
TGACTAATTGGACCACGATG+TGG 0.647353 8.3:+43573915 None:intergenic
GTCCACCTAGGGATGCAGCA+TGG 0.659968 8.3:+43574198 None:intergenic
AGATACAGCTAAGAAAAGGT+GGG 0.662974 8.3:+43573994 None:intergenic
TCATGATCAGAGTGTTGTGG+TGG 0.665411 8.3:+43573735 None:intergenic
TGTTGCCATAGTGGTTGTCG+AGG 0.685997 8.3:+43574034 None:intergenic
AACCATGCTGCATCCCTAGG+TGG 0.687689 8.3:-43574200 MS.gene045953:CDS
ACAACAAGAACAGTAGCTTG+AGG 0.690567 8.3:-43573431 MS.gene045953:CDS
AGTGGTTGTCGAGGTCGTGG+TGG 0.691106 8.3:+43574043 None:intergenic
GGTGGTAAATGTGAGAGTGG+TGG 0.697780 8.3:+43573822 None:intergenic
ATACAGGACAAAATTCAGCA+AGG 0.705667 8.3:-43573586 MS.gene045953:CDS
TGTGCTCTTGTGGCTCACGG+CGG 0.720758 8.3:+43574072 None:intergenic
CCGTTACCACTGCCACATCG+TGG 0.726480 8.3:-43573927 MS.gene045953:CDS
CGATGTGGCAGTGGTAACGG+TGG 0.750893 8.3:+43573930 None:intergenic
TTGGGATTGAGAGATGATGG+TGG 0.770102 8.3:+43574146 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTCATCATATGAATGAAGA+TGG - chr8.3:43574184-43574203 MS.gene045953:CDS 25.0%
! GATAAGAATAATGCTGATAA+TGG - chr8.3:43574136-43574155 MS.gene045953:CDS 25.0%
AAAATGCAAAAGAGTGATGA+TGG - chr8.3:43573965-43573984 MS.gene045953:CDS 30.0%
AAGAAATCAGAATCTGATGT+TGG - chr8.3:43574076-43574095 MS.gene045953:CDS 30.0%
ATAACAACAACACAAGTAGT+GGG - chr8.3:43573867-43573886 MS.gene045953:CDS 30.0%
CATATGATGAATGACATTGT+TGG + chr8.3:43574176-43574195 None:intergenic 30.0%
GTTCATGTTTCTTCTGTTAA+TGG - chr8.3:43574217-43574236 MS.gene045953:CDS 30.0%
! AATTGAGATTCCTTTGAAGA+TGG + chr8.3:43573799-43573818 None:intergenic 30.0%
!! CATGGTTTTTCTGAGAAATT+GGG - chr8.3:43573938-43573957 MS.gene045953:CDS 30.0%
ACCATCAAAACCATCTTCAA+AGG - chr8.3:43573786-43573805 MS.gene045953:CDS 35.0%
AGATACAGCTAAGAAAAGGT+GGG + chr8.3:43573493-43573512 None:intergenic 35.0%
ATACAGGACAAAATTCAGCA+AGG - chr8.3:43573898-43573917 MS.gene045953:CDS 35.0%
CAGAAATTCTGCAATGACAT+TGG - chr8.3:43573995-43574014 MS.gene045953:CDS 35.0%
CATAACAACAACACAAGTAG+TGG - chr8.3:43573866-43573885 MS.gene045953:CDS 35.0%
GTGTAGATACAGCTAAGAAA+AGG + chr8.3:43573497-43573516 None:intergenic 35.0%
TAGATACAGCTAAGAAAAGG+TGG + chr8.3:43573494-43573513 None:intergenic 35.0%
TCAGAATCTGATGTTGGAAT+TGG - chr8.3:43574082-43574101 MS.gene045953:CDS 35.0%
! CTAGAGGAGTTTTCAAAGTT+TGG - chr8.3:43574023-43574042 MS.gene045953:CDS 35.0%
! TATGATTGTTGCTGTTGTTG+TGG + chr8.3:43573850-43573869 None:intergenic 35.0%
!! AATGACATTGGTGTTTCTAG+AGG - chr8.3:43574007-43574026 MS.gene045953:CDS 35.0%
!! GCATGGTTTTTCTGAGAAAT+TGG - chr8.3:43573937-43573956 MS.gene045953:CDS 35.0%
!! GCTGATAATGGTAATGATGA+TGG - chr8.3:43574148-43574167 MS.gene045953:CDS 35.0%
!! GTTTTTCTGAGAAATTGGGT+TGG - chr8.3:43573942-43573961 MS.gene045953:CDS 35.0%
!!! TCCTTTGAAGATGGTTTTGA+TGG + chr8.3:43573790-43573809 None:intergenic 35.0%
!!! TTTGAAGATGGTTTTGATGG+TGG + chr8.3:43573787-43573806 None:intergenic 35.0%
ACAACAAGAACAGTAGCTTG+AGG - chr8.3:43574053-43574072 MS.gene045953:CDS 40.0%
ATGGGCTTGAAATTGGACTT+GGG + chr8.3:43573634-43573653 None:intergenic 40.0%
GAAGAGTGATGATAAGAAGG+TGG + chr8.3:43573683-43573702 None:intergenic 40.0%
GCTGAAGAGTGATGATAAGA+AGG + chr8.3:43573686-43573705 None:intergenic 40.0%
TCATTGGGATTGAGAGATGA+TGG + chr8.3:43573344-43573363 None:intergenic 40.0%
! GTAGTGGGAAAAAGAGATAC+AGG - chr8.3:43573882-43573901 MS.gene045953:CDS 40.0%
! TTGGGCTTGTACTTTGACTT+GGG + chr8.3:43573604-43573623 None:intergenic 40.0%
!! GCAAAAGAGTGATGATGGTT+TGG - chr8.3:43573970-43573989 MS.gene045953:CDS 40.0%
!! TGATCATGATCAGAGTGTTG+TGG + chr8.3:43573755-43573774 None:intergenic 40.0%
!!! AAGAAAAGGTGGGCTGTTTT+TGG + chr8.3:43573483-43573502 None:intergenic 40.0%
AAAAACCATGCTGCATCCCT+AGG - chr8.3:43573281-43573300 MS.gene045953:CDS 45.0%
ATCAAGTGCATGTCCACCTA+GGG + chr8.3:43573300-43573319 None:intergenic 45.0%
ATTGGACTTGGGCTATGACT+TGG + chr8.3:43573623-43573642 None:intergenic 45.0%
CAGCACATTTGAGGGATCTT+GGG + chr8.3:43573367-43573386 None:intergenic 45.0%
CTTGGGCTTGTACTTTGACT+TGG + chr8.3:43573605-43573624 None:intergenic 45.0%
GAAGGTGGTAAATGTGAGAG+TGG + chr8.3:43573668-43573687 None:intergenic 45.0%
GAGCAGAAAGAGAAGATGCA+TGG - chr8.3:43573920-43573939 MS.gene045953:CDS 45.0%
GGGCTTGTGCTTTGACTAAT+TGG + chr8.3:43573584-43573603 None:intergenic 45.0%
TGACTAATTGGACCACGATG+TGG + chr8.3:43573572-43573591 None:intergenic 45.0%
TTGAGGGATCTTGGGTCATT+GGG + chr8.3:43573359-43573378 None:intergenic 45.0%
TTGGACTTGGGCTATGACTT+GGG + chr8.3:43573622-43573641 None:intergenic 45.0%
TTTGAGGGATCTTGGGTCAT+TGG + chr8.3:43573360-43573379 None:intergenic 45.0%
! CCAAGAGCTAAAAGCATGTG+AGG + chr8.3:43573710-43573729 None:intergenic 45.0%
! GATGGGCTTGAAATTGGACT+TGG + chr8.3:43573635-43573654 None:intergenic 45.0%
! TTGGGATTGAGAGATGATGG+TGG + chr8.3:43573341-43573360 None:intergenic 45.0%
!! GGTGATGATGGGCTTGAAAT+TGG + chr8.3:43573641-43573660 None:intergenic 45.0%
!! TCATGATCAGAGTGTTGTGG+TGG + chr8.3:43573752-43573771 None:intergenic 45.0%
!!! CACATGCTTTTAGCTCTTGG+TGG - chr8.3:43573710-43573729 MS.gene045953:CDS 45.0%
!!! CCTCACATGCTTTTAGCTCT+TGG - chr8.3:43573707-43573726 MS.gene045953:CDS 45.0%
!!! GAAGATGGTTTTGATGGTGG+TGG + chr8.3:43573784-43573803 None:intergenic 45.0%
AGCCACAAGCAGCACATTTG+AGG + chr8.3:43573376-43573395 None:intergenic 50.0%
CATCAAGTGCATGTCCACCT+AGG + chr8.3:43573301-43573320 None:intergenic 50.0%
CTAGGTGGACATGCACTTGA+TGG - chr8.3:43573299-43573318 MS.gene045953:CDS 50.0%
GCAGCACATTTGAGGGATCT+TGG + chr8.3:43573368-43573387 None:intergenic 50.0%
GCCACAAGCAGCACATTTGA+GGG + chr8.3:43573375-43573394 None:intergenic 50.0%
GGTAAATGTGAGAGTGGTGG+TGG + chr8.3:43573662-43573681 None:intergenic 50.0%
GGTGGTAAATGTGAGAGTGG+TGG + chr8.3:43573665-43573684 None:intergenic 50.0%
TGTTGCCATAGTGGTTGTCG+AGG + chr8.3:43573453-43573472 None:intergenic 50.0%
! GGACATGCACTTGATGGATG+TGG - chr8.3:43573305-43573324 MS.gene045953:CDS 50.0%
!! AGAGTGGTGGTGGTGATGAT+GGG + chr8.3:43573652-43573671 None:intergenic 50.0%
!! GGTGGTGGAACTGTTGTTGA+AGG + chr8.3:43573524-43573543 None:intergenic 50.0%
!! TCCCTCAAATGTGCTGCTTG+TGG - chr8.3:43573371-43573390 MS.gene045953:CDS 50.0%
!!! GATGGTTTTGATGGTGGTGG+TGG + chr8.3:43573781-43573800 None:intergenic 50.0%
AACCATGCTGCATCCCTAGG+TGG - chr8.3:43573284-43573303 MS.gene045953:CDS 55.0%
ATTGGACCACGATGTGGCAG+TGG + chr8.3:43573566-43573585 None:intergenic 55.0%
CACGACCTCGACAACCACTA+TGG - chr8.3:43573445-43573464 MS.gene045953:CDS 55.0%
CATAGTGGTTGTCGAGGTCG+TGG + chr8.3:43573447-43573466 None:intergenic 55.0%
CCACGATGTGGCAGTGGTAA+CGG + chr8.3:43573560-43573579 None:intergenic 55.0%
GGATGTGCTCTTGTGGCTCA+CGG + chr8.3:43573418-43573437 None:intergenic 55.0%
GTGGTGAGGATGTGCTCTTG+TGG + chr8.3:43573425-43573444 None:intergenic 55.0%
!! GAGAGTGGTGGTGGTGATGA+TGG + chr8.3:43573653-43573672 None:intergenic 55.0%
!! GTGCTGCTTGTGGCTGTCAT+CGG - chr8.3:43573381-43573400 MS.gene045953:CDS 55.0%
AGTGGTTGTCGAGGTCGTGG+TGG + chr8.3:43573444-43573463 None:intergenic 60.0%
CCGTTACCACTGCCACATCG+TGG - chr8.3:43573557-43573576 MS.gene045953:CDS 60.0%
GTCCACCTAGGGATGCAGCA+TGG + chr8.3:43573289-43573308 None:intergenic 60.0%
TGTGCTCTTGTGGCTCACGG+CGG + chr8.3:43573415-43573434 None:intergenic 60.0%
! TTGTCGAGGTCGTGGTGGTG+AGG + chr8.3:43573439-43573458 None:intergenic 60.0%
!! AACGGTGGTGGTGGTTGTGG+TGG + chr8.3:43573542-43573561 None:intergenic 60.0%
!! CGATGTGGCAGTGGTAACGG+TGG + chr8.3:43573557-43573576 None:intergenic 60.0%
!! GGCGCTGACTGTTGCCATAG+TGG + chr8.3:43573462-43573481 None:intergenic 60.0%
!! GGTAACGGTGGTGGTGGTTG+TGG + chr8.3:43573545-43573564 None:intergenic 60.0%
!! TGTGGCAGTGGTAACGGTGG+TGG + chr8.3:43573554-43573573 None:intergenic 60.0%
!! GGCAGTGGTAACGGTGGTGG+TGG + chr8.3:43573551-43573570 None:intergenic 65.0%
!! GGTGGTGGTGGTTGTGGTGG+TGG + chr8.3:43573539-43573558 None:intergenic 65.0%
GCTCTTGTGGCTCACGGCGG+TGG + chr8.3:43573412-43573431 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 43573254 43574252 43573254 ID=MS.gene045953
chr8.3 mRNA 43573254 43574252 43573254 ID=MS.gene045953.t1;Parent=MS.gene045953
chr8.3 exon 43573254 43574252 43573254 ID=MS.gene045953.t1.exon1;Parent=MS.gene045953.t1
chr8.3 CDS 43573254 43574252 43573254 ID=cds.MS.gene045953.t1;Parent=MS.gene045953.t1
Gene Sequence

>MS.gene045953

ATGGTTGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCATCCCTAGGTGGACATGCACTTGATGGATGTGGTGAATTCATGCCACCATCATCTCTCAATCCCAATGACCCAAGATCCCTCAAATGTGCTGCTTGTGGCTGTCATCGGAATTTCCACCGCCGTGAGCCACAAGAGCACATCCTCACCACCACGACCTCGACAACCACTATGGCAACAGTCAGCGCCAAAAACAGCCCACCTTTTCTTAGCTGTATCTACACAACTCCTTCAACAACAGTTCCACCACCACAACCACCACCACCGTTACCACTGCCACATCGTGGTCCAATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGTCCAATTTCAAGCCCATCATCACCACCACCACTCTCACATTTACCACCTTCTTATCATCACTCTTCAGCTCCTCACATGCTTTTAGCTCTTGGTGGAAATGCTTATTCAACACCACCACAACACTCTGATCATGATCAACACCACCACCACCATCAAAACCATCTTCAAAGGAATCTCAATTTTGCTTCTTCTGTTGTTAAGCTTGAAAGCCACAACAACAGCAACAATCATAACAACAACACAAGTAGTGGGAAAAAGAGATACAGGACAAAATTCAGCAAGGAGCAGAAAGAGAAGATGCATGGTTTTTCTGAGAAATTGGGTTGGAAAATGCAAAAGAGTGATGATGGTTTGGTTCAGAAATTCTGCAATGACATTGGTGTTTCTAGAGGAGTTTTCAAAGTTTGGATGCATAACAACAAGAACAGTAGCTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGGAATTGCTACTCAAATTGCTACTCAAAATGATGATAAGAATAATGCTGATAATGGTAATGATGATGGTTCCAACAATGTCATTCATCATATGAATGAAGATGGATGTGTCAATGTTCATGTTTCTTCTGTTAATGGTTTATCCTCTTAA
Protein sequence

>MS.gene045953.t1

MVVSYKECLKNHAASLGGHALDGCGEFMPPSSLNPNDPRSLKCAACGCHRNFHRREPQEHILTTTTSTTTMATVSAKNSPPFLSCIYTTPSTTVPPPQPPPPLPLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHLPPSYHHSSAPHMLLALGGNAYSTPPQHSDHDQHHHHHQNHLQRNLNFASSVVKLESHNNSNNHNNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWKMQKSDDGLVQKFCNDIGVSRGVFKVWMHNNKNSSLRKKSESDVGIGIATQIATQNDDKNNADNGNDDGSNNVIHHMNEDGCVNVHVSSVNGLSS