AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046041

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046041.t1 MTR_0072s0040 82.427 239 18 2 1 215 1 239 3.05e-136 381
MS.gene046041.t1 MTR_2g090080 65.254 236 58 3 4 215 1 236 7.17e-107 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046041.t1 AT4G28190 68.878 196 56 2 25 215 73 268 2.22e-96 282
MS.gene046041.t1 AT4G28190 62.115 227 62 3 13 215 11 237 3.65e-95 278
MS.gene046041.t1 AT2G20825 57.589 224 65 4 16 215 10 227 4.04e-86 254

Find 47 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACCAACCCGGCCATTT+TGG 0.182520 4.4:-57367884 None:intergenic
AATATCTGGGTTATAATTAA+TGG 0.255756 4.4:+57367780 MS.gene046041:CDS
GCACTTCTTGTGTGTGCTTC+GGG 0.294039 4.4:+57369546 MS.gene046041:CDS
TGCACTTCTTGTGTGTGCTT+CGG 0.308806 4.4:+57369545 MS.gene046041:CDS
GGAAATGGAAGAATAATATC+TGG 0.324881 4.4:+57367766 MS.gene046041:CDS
AATGGGTTGGAGAAGGGAAA+TGG 0.345803 4.4:+57365713 MS.gene046041:CDS
ATGAGTTTGTTCGCTGTACT+AGG 0.392965 4.4:+57367910 MS.gene046041:CDS
ATGCTGTGTCAGATGCAAAT+TGG 0.397171 4.4:+57367991 MS.gene046041:CDS
ATGGGTTGGAGAAGGGAAAT+GGG 0.422445 4.4:+57365714 MS.gene046041:CDS
GGTTATAATTAATGGTGATA+AGG 0.431324 4.4:+57367788 MS.gene046041:CDS
GAAGAGAGACAGCAAGGAAA+TGG 0.432232 4.4:+57367751 MS.gene046041:CDS
GAATAAACGTACTTCTCATA+TGG 0.434948 4.4:-57368029 None:intergenic
TTTATGGAGAAAATGGAGAA+TGG 0.445958 4.4:+57365695 None:intergenic
GGTTCTCAGAGATCCCAAAA+TGG 0.450021 4.4:+57367870 MS.gene046041:CDS
TTATGGAGAAAATGGAGAAT+GGG 0.453953 4.4:+57365696 None:intergenic
AAGAGCTGAGAGAAATGAGT+GGG 0.458242 4.4:+57365756 MS.gene046041:CDS
TAATGGTGATAAGGTTCCAT+TGG 0.460779 4.4:+57367797 MS.gene046041:CDS
CAAGTGGCGAAAGCTGCTAA+TGG 0.462437 4.4:+57367849 MS.gene046041:CDS
ATGGAGAATGGGTTGGAGAA+GGG 0.474047 4.4:+57365707 MS.gene046041:CDS
CTCAGAGATCCCAAAATGGC+CGG 0.480680 4.4:+57367874 MS.gene046041:CDS
AATGGTGATAAGGTTCCATT+GGG 0.489767 4.4:+57367798 MS.gene046041:CDS
AACCTTTGCACGTTGGAGAT+CGG 0.493178 4.4:-57369523 None:intergenic
AATGGAGAATGGGTTGGAGA+AGG 0.494806 4.4:+57365706 MS.gene046041:CDS
TGGTAAAGTCAGTACAAGTC+TGG 0.500731 4.4:-57369601 None:intergenic
GGAGAAAATGGAGAATGGGT+TGG 0.523981 4.4:+57365700 MS.gene046041:CDS
ATTTCGTCTGAGATCTAAAG+AGG 0.537276 4.4:+57367950 MS.gene046041:CDS
AGATCCCAAAATGGCCGGGT+TGG 0.546651 4.4:+57367879 MS.gene046041:CDS
GGCCGATCTCCAACGTGCAA+AGG 0.552993 4.4:+57369521 MS.gene046041:CDS
TTTATACTGGCAGTGTACTT+CGG 0.558018 4.4:+57367071 MS.gene046041:intron
CACATTGCAGGATGGTGTCA+AGG 0.566118 4.4:+57367107 MS.gene046041:CDS
TCAGAGATCCCAAAATGGCC+GGG 0.570257 4.4:+57367875 MS.gene046041:CDS
GAAATGGAAGAATAATATCT+GGG 0.580008 4.4:+57367767 MS.gene046041:CDS
CGAAGAGTTTACAGAGGATG+CGG 0.588649 4.4:+57369500 MS.gene046041:CDS
TTGCATCTGACACAGCATCA+TGG 0.597955 4.4:-57367986 None:intergenic
ACTCATCGCGGTGACCAACC+CGG 0.606791 4.4:-57367893 None:intergenic
AGAGCTGAGAGAAATGAGTG+GGG 0.614369 4.4:+57365757 MS.gene046041:CDS
GCTCAAATACTACAATCAAG+TGG 0.629351 4.4:+57367833 MS.gene046041:CDS
GAAGTGCAACCTTTGCACGT+TGG 0.632927 4.4:-57369530 None:intergenic
ACACAGCATCATGGTGAATG+CGG 0.634639 4.4:-57367977 None:intergenic
TTGTTTGCCACATTGCAGGA+TGG 0.646537 4.4:+57367099 MS.gene046041:CDS
TGGGTTGTCAATGTTTAGCG+AGG 0.646931 4.4:+57365733 MS.gene046041:CDS
GAAGAGCTGAGAGAAATGAG+TGG 0.646981 4.4:+57365755 MS.gene046041:CDS
GGAAGTCGAAGAGTTTACAG+AGG 0.661639 4.4:+57369494 MS.gene046041:CDS
ACTCTGGAAGAGAGACAGCA+AGG 0.669740 4.4:+57367745 MS.gene046041:CDS
TGCGATGATGAAGAAGAGCG+AGG 0.684544 4.4:+57369473 MS.gene046041:CDS
CTTGACACCATCCTGCAATG+TGG 0.742513 4.4:-57367106 None:intergenic
TACAGCGAACAAACTCATCG+CGG 0.760016 4.4:-57367905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTATTAATTTTT+TGG + chr4.4:57369187-57369206 MS.gene046041:intron 0.0%
!! AAAACAAAATCATAAATTAT+TGG - chr4.4:57367492-57367511 None:intergenic 10.0%
!! AAATATAGAAGATTTATAAT+TGG + chr4.4:57366302-57366321 MS.gene046041:intron 10.0%
!! ATAAAATATATAAGAAATTG+AGG - chr4.4:57366951-57366970 None:intergenic 10.0%
!!! AATAATTTATGATTTTGTTT+TGG + chr4.4:57367491-57367510 MS.gene046041:intron 10.0%
!! ACATGAAAAAAAATATACAA+TGG - chr4.4:57367561-57367580 None:intergenic 15.0%
!! GTATAATAATTAATATCCTA+AGG + chr4.4:57366496-57366515 MS.gene046041:intron 15.0%
!! TCAATAATTAGTCATATAAA+CGG - chr4.4:57367389-57367408 None:intergenic 15.0%
!! TCTTTCAAATTAAATTATGA+AGG - chr4.4:57367222-57367241 None:intergenic 15.0%
!!! TATATCATATTACTGTTTTA+CGG + chr4.4:57368617-57368636 MS.gene046041:intron 15.0%
!!! TTATTAATATCAAGTTTTTC+AGG + chr4.4:57369444-57369463 MS.gene046041:intron 15.0%
!! AAAACTAATAGCCATAAATT+TGG - chr4.4:57369213-57369232 None:intergenic 20.0%
!! AACATCATATGCAAAAATTA+AGG - chr4.4:57367684-57367703 None:intergenic 20.0%
!! AATATCTGGGTTATAATTAA+TGG + chr4.4:57367780-57367799 MS.gene046041:CDS 20.0%
!! AATCTATAACATACAAGTTA+TGG + chr4.4:57366526-57366545 MS.gene046041:intron 20.0%
!! ATATAAGTATTTATGCATGT+CGG - chr4.4:57366031-57366050 None:intergenic 20.0%
!! ATATGACTAATTATTGAATG+TGG + chr4.4:57367392-57367411 MS.gene046041:intron 20.0%
!! CAAATTAAATTATGAAGGTA+TGG - chr4.4:57367217-57367236 None:intergenic 20.0%
!! TACTTTATAAAAACTTCATC+AGG + chr4.4:57368594-57368613 MS.gene046041:intron 20.0%
!! TTATAGATATGGATATCATT+TGG + chr4.4:57369231-57369250 MS.gene046041:intron 20.0%
!! TTATAGATTAACAATACCTT+AGG - chr4.4:57366515-57366534 None:intergenic 20.0%
!! TTGTGAGATTAAATTCAATA+TGG + chr4.4:57366337-57366356 MS.gene046041:intron 20.0%
!!! AATCTTTTGCATAAAATTTG+AGG + chr4.4:57368735-57368754 MS.gene046041:intron 20.0%
!!! ATAATTGATAGTCTTAATCT+AGG + chr4.4:57368522-57368541 MS.gene046041:intron 20.0%
!!! ATCTTTTGCATAAAATTTGA+GGG + chr4.4:57368736-57368755 MS.gene046041:intron 20.0%
!!! CAATTTTGTGGTAATAATTA+AGG - chr4.4:57369407-57369426 None:intergenic 20.0%
!!! TAATTTTTTGGCCAAATTTA+TGG + chr4.4:57369199-57369218 MS.gene046041:intron 20.0%
!!! TATATTTTACTGGTAATTTG+TGG + chr4.4:57368765-57368784 MS.gene046041:intron 20.0%
!!! TCTATAAAATGTCAATTTTG+TGG - chr4.4:57369419-57369438 None:intergenic 20.0%
!!! TTTTCAAAAAAAAATCGTGT+AGG + chr4.4:57368456-57368475 MS.gene046041:intron 20.0%
! AAAAGACCAAACTTATGAAT+TGG - chr4.4:57368406-57368425 None:intergenic 25.0%
! AAGTAAATAAAGATGCCATT+TGG - chr4.4:57368215-57368234 None:intergenic 25.0%
! AATTAAGTGGAATGAATATG+AGG - chr4.4:57366623-57366642 None:intergenic 25.0%
! AGTAGTTGAACAGAAAATAA+AGG - chr4.4:57369268-57369287 None:intergenic 25.0%
! ATACAGTTTATGTTCCATAT+TGG + chr4.4:57368830-57368849 MS.gene046041:intron 25.0%
! CTATAAAATACTAACACACA+CGG - chr4.4:57366121-57366140 None:intergenic 25.0%
! CTGAAAATGAGTTTATAAGT+GGG - chr4.4:57368317-57368336 None:intergenic 25.0%
! GAAATGGAAGAATAATATCT+GGG + chr4.4:57367767-57367786 MS.gene046041:CDS 25.0%
! GGTTATAATTAATGGTGATA+AGG + chr4.4:57367788-57367807 MS.gene046041:CDS 25.0%
! TAATAAAACAACACACATAG+TGG - chr4.4:57366865-57366884 None:intergenic 25.0%
! TATATAAGAAATTGAGGTAC+TGG - chr4.4:57366945-57366964 None:intergenic 25.0%
! TCTGAAAATGAGTTTATAAG+TGG - chr4.4:57368318-57368337 None:intergenic 25.0%
! TGAGAATTTGTGATTTATAC+TGG + chr4.4:57367058-57367077 MS.gene046041:intron 25.0%
! TGCAGTTATTTATCATAGTT+TGG - chr4.4:57368714-57368733 None:intergenic 25.0%
! TGCATTCACAAATAATTTGA+AGG - chr4.4:57365880-57365899 None:intergenic 25.0%
! TGTGCATAAATAAATAGTGT+AGG - chr4.4:57369354-57369373 None:intergenic 25.0%
! TTCTTAAAGTTACTAAGTCT+TGG + chr4.4:57368802-57368821 MS.gene046041:intron 25.0%
!! AGGGATGAAATATATTTTAC+TGG + chr4.4:57368755-57368774 MS.gene046041:intron 25.0%
!! TTAAATTATGAAGGTATGGT+AGG - chr4.4:57367213-57367232 None:intergenic 25.0%
!! TTTTCATTTTCAAATCGTGT+AGG + chr4.4:57368427-57368446 MS.gene046041:intron 25.0%
!!! GGCTATTAGTTTTATAGATA+TGG + chr4.4:57369220-57369239 MS.gene046041:intron 25.0%
!!! TAATTGTTCTGCTTTTACAT+TGG + chr4.4:57369130-57369149 MS.gene046041:intron 25.0%
!!! TTATAGGTTGATAGTGTATA+TGG + chr4.4:57366135-57366154 MS.gene046041:intron 25.0%
AAAATGAGTTTATAAGTGGG+AGG - chr4.4:57368314-57368333 None:intergenic 30.0%
AACATAATGTAACCGTAGTA+AGG + chr4.4:57366421-57366440 MS.gene046041:intron 30.0%
AATTTGAAAGATCAGCAACT+TGG + chr4.4:57367231-57367250 MS.gene046041:intron 30.0%
ATTTGAAAGATCAGCAACTT+GGG + chr4.4:57367232-57367251 MS.gene046041:intron 30.0%
CAAAGGATATAAGCATGAAT+TGG - chr4.4:57368980-57368999 None:intergenic 30.0%
CAATTCATGCTTATATCCTT+TGG + chr4.4:57368978-57368997 MS.gene046041:intron 30.0%
CATAGTGACTGAAAATTAAG+TGG - chr4.4:57366636-57366655 None:intergenic 30.0%
CTGGTTAAACTATTCCAATA+TGG - chr4.4:57368847-57368866 None:intergenic 30.0%
GAATAAACGTACTTCTCATA+TGG - chr4.4:57368032-57368051 None:intergenic 30.0%
GGAAATGGAAGAATAATATC+TGG + chr4.4:57367766-57367785 MS.gene046041:CDS 30.0%
GTAATGTCATGTTTATATGG+CGG + chr4.4:57366800-57366819 MS.gene046041:intron 30.0%
GTCGTAATGTCATGTTTATA+TGG + chr4.4:57366797-57366816 MS.gene046041:intron 30.0%
GTTAAGCCAATTCATAAGTT+TGG + chr4.4:57368397-57368416 MS.gene046041:intron 30.0%
TAAATAGTGTAGGTTATGTC+AGG - chr4.4:57369344-57369363 None:intergenic 30.0%
TAAGCATGAATTGGTGTATT+AGG - chr4.4:57368971-57368990 None:intergenic 30.0%
TCATTCATATATCCAGTGAT+AGG + chr4.4:57367520-57367539 MS.gene046041:intron 30.0%
TGACTAATTATTGAATGTGG+TGG + chr4.4:57367395-57367414 MS.gene046041:intron 30.0%
TGGATCAGAGTTATCAATAA+TGG - chr4.4:57366845-57366864 None:intergenic 30.0%
TTAACAATGGAAATAGTGCA+CGG + chr4.4:57368363-57368382 MS.gene046041:intron 30.0%
TTTCTGTTCAACTACTGAAT+GGG + chr4.4:57369272-57369291 MS.gene046041:intron 30.0%
! ACTTATGAATTGGCTTAACT+TGG - chr4.4:57368396-57368415 None:intergenic 30.0%
! ATGGATGTTCTTTTCTTTGA+TGG + chr4.4:57366545-57366564 MS.gene046041:intron 30.0%
! CGTGTGTGTTAGTATTTTAT+AGG + chr4.4:57366119-57366138 MS.gene046041:intron 30.0%
! GCAAGTTATGCTTTTAATGT+TGG + chr4.4:57368086-57368105 MS.gene046041:intron 30.0%
! TGACTTTGAAGAAATATCCT+AGG - chr4.4:57366448-57366467 None:intergenic 30.0%
! TGAGTTTTTCTTTTCACCAT+GGG - chr4.4:57367594-57367613 None:intergenic 30.0%
! TTGAGTTTTTCTTTTCACCA+TGG - chr4.4:57367595-57367614 None:intergenic 30.0%
! TTTTCTGTTCAACTACTGAA+TGG + chr4.4:57369271-57369290 MS.gene046041:intron 30.0%
!! ACTTTGATGAGTTTTGTGTT+TGG + chr4.4:57366173-57366192 MS.gene046041:intron 30.0%
!! TTGAATGTGGTGGATAATTT+AGG + chr4.4:57367405-57367424 MS.gene046041:intron 30.0%
!!! ATGTTTATATGGCGGATTTT+TGG + chr4.4:57366808-57366827 MS.gene046041:intron 30.0%
!!! GTACATTTTTTTACCTGAGT+CGG + chr4.4:57366084-57366103 MS.gene046041:intron 30.0%
AAACATGACATTACGACGTA+TGG - chr4.4:57366794-57366813 None:intergenic 35.0%
AAAGAGAAGAAGCTAACAAG+TGG - chr4.4:57367439-57367458 None:intergenic 35.0%
AAATTCTCATTTCTCAGCAG+AGG - chr4.4:57367047-57367066 None:intergenic 35.0%
AATATCCTAGGACCTTACTA+CGG - chr4.4:57366436-57366455 None:intergenic 35.0%
AATGGTGATAAGGTTCCATT+GGG + chr4.4:57367798-57367817 MS.gene046041:CDS 35.0%
ACAAGTACTCAAGTAGAACT+TGG + chr4.4:57366990-57367009 MS.gene046041:intron 35.0%
ACAGTATCTGTTGATGCAAA+AGG + chr4.4:57367014-57367033 MS.gene046041:intron 35.0%
ACTTATAAAGCTCCTATCAC+TGG - chr4.4:57367535-57367554 None:intergenic 35.0%
AGTCATCGAAATTTGCAAAG+TGG + chr4.4:57366463-57366482 MS.gene046041:intron 35.0%
ATTATTTGTGAATGCACTCC+TGG + chr4.4:57365884-57365903 MS.gene046041:intron 35.0%
ATTTGTCTCAATGAACTCCT+TGG + chr4.4:57366234-57366253 MS.gene046041:intron 35.0%
CAACATTTACATTCGAAGCA+CGG - chr4.4:57368138-57368157 None:intergenic 35.0%
CAATGTGAGACTCTTAACAA+TGG + chr4.4:57368350-57368369 MS.gene046041:intron 35.0%
CATCTAGCATGATCATAAAG+AGG - chr4.4:57366266-57366285 None:intergenic 35.0%
CATTGTTAAGAGTCTCACAT+TGG - chr4.4:57368352-57368371 None:intergenic 35.0%
GATATATGCTTCAAGTCCAA+AGG - chr4.4:57368997-57369016 None:intergenic 35.0%
GCAATTATGTATCATTGACG+TGG + chr4.4:57368644-57368663 MS.gene046041:intron 35.0%
GCTCAAATACTACAATCAAG+TGG + chr4.4:57367833-57367852 MS.gene046041:CDS 35.0%
GGAAGATATCTAATTCCTTG+AGG - chr4.4:57369323-57369342 None:intergenic 35.0%
GGACGATATAATAGATGTTG+CGG - chr4.4:57366761-57366780 None:intergenic 35.0%
GGGAAGAGATCATATGATTA+AGG + chr4.4:57367252-57367271 MS.gene046041:intron 35.0%
GGTTGTACTAGTCATAGATA+TGG + chr4.4:57365815-57365834 MS.gene046041:intron 35.0%
GTCTCACATTGGATAATGTA+TGG - chr4.4:57368341-57368360 None:intergenic 35.0%
TAATGGTGATAAGGTTCCAT+TGG + chr4.4:57367797-57367816 MS.gene046041:CDS 35.0%
TAGCACTCTGCAAATTAGTA+AGG - chr4.4:57368497-57368516 None:intergenic 35.0%
TCAGAGTTATCAATAATGGC+TGG - chr4.4:57366841-57366860 None:intergenic 35.0%
TCATAAAGAGGATCAAACCA+AGG - chr4.4:57366254-57366273 None:intergenic 35.0%
TGATACATACGAGTAGAACT+TGG + chr4.4:57366894-57366913 MS.gene046041:intron 35.0%
TTTATACTGGCAGTGTACTT+CGG + chr4.4:57367071-57367090 MS.gene046041:intron 35.0%
! AACGAGAGTACATTATGGAA+TGG - chr4.4:57369019-57369038 None:intergenic 35.0%
! AGACTTAGGGTTTTTCTTAG+TGG + chr4.4:57365851-57365870 MS.gene046041:intron 35.0%
! ATTTCGTCTGAGATCTAAAG+AGG + chr4.4:57367950-57367969 MS.gene046041:CDS 35.0%
! CATATTACTGTTTTACGGCT+GGG + chr4.4:57368622-57368641 MS.gene046041:intron 35.0%
! TCATATTACTGTTTTACGGC+TGG + chr4.4:57368621-57368640 MS.gene046041:intron 35.0%
! TGAACCTTGTTTGTACCAAA+TGG + chr4.4:57368197-57368216 MS.gene046041:intron 35.0%
! TGAGAAACGAGAGTACATTA+TGG - chr4.4:57369024-57369043 None:intergenic 35.0%
!! AATTTTGTTTGCCACATTGC+AGG + chr4.4:57367095-57367114 MS.gene046041:CDS 35.0%
!! ATTTCTAGAACTTAGGCTGT+TGG + chr4.4:57369053-57369072 MS.gene046041:intron 35.0%
!! CGAGCTTATTTCTAGAACTT+AGG + chr4.4:57369046-57369065 MS.gene046041:intron 35.0%
!! GGTTGATAGTGTATATGGTT+TGG + chr4.4:57366140-57366159 MS.gene046041:intron 35.0%
!! TAGTGTATATGGTTTGGTGA+AGG + chr4.4:57366146-57366165 MS.gene046041:intron 35.0%
AAATGATTTCTTGCTCCCTC+TGG + chr4.4:57367331-57367350 MS.gene046041:intron 40.0%
AACAAGGTTCATTCGAAGCA+CGG - chr4.4:57368188-57368207 None:intergenic 40.0%
AAGAGCTGAGAGAAATGAGT+GGG + chr4.4:57365756-57365775 MS.gene046041:CDS 40.0%
AATGATTTCTTGCTCCCTCT+GGG + chr4.4:57367332-57367351 MS.gene046041:intron 40.0%
ACGACGTATGGCAGAAAAAT+TGG - chr4.4:57366782-57366801 None:intergenic 40.0%
AGTTTGGGAACATTTCCTCA+AGG + chr4.4:57369305-57369324 MS.gene046041:intron 40.0%
ATGCTGTGTCAGATGCAAAT+TGG + chr4.4:57367991-57368010 MS.gene046041:CDS 40.0%
ATGTAAGTGATGAGAGAGAG+AGG - chr4.4:57365939-57365958 None:intergenic 40.0%
ATTCTCTGTGTGCACTTGAA+TGG + chr4.4:57368940-57368959 MS.gene046041:intron 40.0%
CCATACAAAACCAGCTTGTA+AGG + chr4.4:57368279-57368298 MS.gene046041:intron 40.0%
CGTGCTTCGAATGTAAATGT+TGG + chr4.4:57368136-57368155 MS.gene046041:intron 40.0%
GAATATGTTGAAGTCACGTG+TGG + chr4.4:57365794-57365813 MS.gene046041:intron 40.0%
GCTGCATTTGAAAAACACTC+TGG + chr4.4:57367729-57367748 MS.gene046041:CDS 40.0%
TAAACCCAGAATTCAGTACC+AGG - chr4.4:57368871-57368890 None:intergenic 40.0%
TCATGTGCTTTATGTACCCA+TGG + chr4.4:57367575-57367594 MS.gene046041:intron 40.0%
TGGAATAGTTTAACCAGACC+TGG + chr4.4:57368850-57368869 MS.gene046041:intron 40.0%
TGGTAAAGTCAGTACAAGTC+TGG - chr4.4:57369604-57369623 None:intergenic 40.0%
TGTTCAACTACTGAATGGGA+AGG + chr4.4:57369276-57369295 MS.gene046041:intron 40.0%
! ATGAGTTTGTTCGCTGTACT+AGG + chr4.4:57367910-57367929 MS.gene046041:CDS 40.0%
! CATAGATATGGTGATGCTGT+TGG + chr4.4:57365827-57365846 MS.gene046041:intron 40.0%
! GATGCCATTTGGTACAAACA+AGG - chr4.4:57368204-57368223 None:intergenic 40.0%
! TCATTGACGTGGTCTCTTTT+CGG + chr4.4:57368655-57368674 MS.gene046041:intron 40.0%
! TGATGCTGTTGGTAGACTTA+GGG + chr4.4:57365838-57365857 MS.gene046041:intron 40.0%
!! GAATTTTGACAACACTGCAG+TGG - chr4.4:57366694-57366713 None:intergenic 40.0%
!! GAGTGTTTTTCAAATGCAGC+AGG - chr4.4:57367729-57367748 None:intergenic 40.0%
!!! CCTTACAAGCTGGTTTTGTA+TGG - chr4.4:57368282-57368301 None:intergenic 40.0%
!!! CTGGTTTTGTATGGTGAGTT+AGG - chr4.4:57368273-57368292 None:intergenic 40.0%
AACCTTTGCACGTTGGAGAT+CGG - chr4.4:57369526-57369545 None:intergenic 45.0%
AATGGGAAGGACTCAGAGTT+TGG + chr4.4:57369289-57369308 MS.gene046041:intron 45.0%
ACAACACTGCAGTGGATACA+TGG - chr4.4:57366686-57366705 None:intergenic 45.0%
ACACAGCATCATGGTGAATG+CGG - chr4.4:57367980-57367999 None:intergenic 45.0%
AGAGCTGAGAGAAATGAGTG+GGG + chr4.4:57365757-57365776 MS.gene046041:CDS 45.0%
ATGGGAAGGACTCAGAGTTT+GGG + chr4.4:57369290-57369309 MS.gene046041:intron 45.0%
CGAAGAGTTTACAGAGGATG+CGG + chr4.4:57369500-57369519 MS.gene046041:CDS 45.0%
GAAGAGAGACAGCAAGGAAA+TGG + chr4.4:57367751-57367770 MS.gene046041:CDS 45.0%
GAAGAGCTGAGAGAAATGAG+TGG + chr4.4:57365755-57365774 MS.gene046041:CDS 45.0%
GCACACAGAGAATCACTAGA+GGG - chr4.4:57368933-57368952 None:intergenic 45.0%
GGAAGTCGAAGAGTTTACAG+AGG + chr4.4:57369494-57369513 MS.gene046041:CDS 45.0%
GGAGAAAATGGAGAATGGGT+TGG + chr4.4:57365700-57365719 MS.gene046041:CDS 45.0%
GGCAGCTGCAATCTGAAAAA+CGG - chr4.4:57369583-57369602 None:intergenic 45.0%
GGTTCTCAGAGATCCCAAAA+TGG + chr4.4:57367870-57367889 MS.gene046041:CDS 45.0%
GTGTTGTCAAAATTCCGCCA+TGG + chr4.4:57366699-57366718 MS.gene046041:intron 45.0%
TACAGCGAACAAACTCATCG+CGG - chr4.4:57367908-57367927 None:intergenic 45.0%
TGCACACAGAGAATCACTAG+AGG - chr4.4:57368934-57368953 None:intergenic 45.0%
TGCACTTCTTGTGTGTGCTT+CGG + chr4.4:57369545-57369564 MS.gene046041:CDS 45.0%
TGGGTTGTCAATGTTTAGCG+AGG + chr4.4:57365733-57365752 MS.gene046041:CDS 45.0%
TGTAACCGTAGTAAGGTCCT+AGG + chr4.4:57366428-57366447 MS.gene046041:intron 45.0%
TTGCATCTGACACAGCATCA+TGG - chr4.4:57367989-57368008 None:intergenic 45.0%
TTGTTTGCCACATTGCAGGA+TGG + chr4.4:57367099-57367118 MS.gene046041:CDS 45.0%
! AGCAGCACTGTTTTACCCAA+TGG - chr4.4:57367816-57367835 None:intergenic 45.0%
! CAGACCTGGTACTGAATTCT+GGG + chr4.4:57368864-57368883 MS.gene046041:intron 45.0%
! GTGATGCTGTTGGTAGACTT+AGG + chr4.4:57365837-57365856 MS.gene046041:intron 45.0%
! TCATTTCTCAGCAGAGGTAC+TGG - chr4.4:57367041-57367060 None:intergenic 45.0%
!! AATGGAGAATGGGTTGGAGA+AGG + chr4.4:57365706-57365725 MS.gene046041:CDS 45.0%
!! AATGGGTTGGAGAAGGGAAA+TGG + chr4.4:57365713-57365732 MS.gene046041:CDS 45.0%
!! ATGGAGAATGGGTTGGAGAA+GGG + chr4.4:57365707-57365726 MS.gene046041:CDS 45.0%
!! ATGGGTTGGAGAAGGGAAAT+GGG + chr4.4:57365714-57365733 MS.gene046041:CDS 45.0%
AATCCGCCATAATGCTGCCA+TGG - chr4.4:57366719-57366738 None:intergenic 50.0%
ATAGATGTTGCGGCCTCTGA+CGG - chr4.4:57366751-57366770 None:intergenic 50.0%
ATTCCGCCATGGCAGCATTA+TGG + chr4.4:57366710-57366729 MS.gene046041:intron 50.0%
CAAGTGGCGAAAGCTGCTAA+TGG + chr4.4:57367849-57367868 MS.gene046041:CDS 50.0%
CCAGAATTCAGTACCAGGTC+TGG - chr4.4:57368866-57368885 None:intergenic 50.0%
CTCAGAGATCCCAAAATGGC+CGG + chr4.4:57367874-57367893 MS.gene046041:CDS 50.0%
CTTGACACCATCCTGCAATG+TGG - chr4.4:57367109-57367128 None:intergenic 50.0%
GAAGTGCAACCTTTGCACGT+TGG - chr4.4:57369533-57369552 None:intergenic 50.0%
GAGAGACCTTCATCACAACC+AGG - chr4.4:57365905-57365924 None:intergenic 50.0%
GCACTTCTTGTGTGTGCTTC+GGG + chr4.4:57369546-57369565 MS.gene046041:CDS 50.0%
GCATCACTCACCTTACAAGC+TGG - chr4.4:57368292-57368311 None:intergenic 50.0%
TCAGAGATCCCAAAATGGCC+GGG + chr4.4:57367875-57367894 MS.gene046041:CDS 50.0%
TGCACTCCTGGTTGTGATGA+AGG + chr4.4:57365896-57365915 MS.gene046041:intron 50.0%
TGCGATGATGAAGAAGAGCG+AGG + chr4.4:57369473-57369492 MS.gene046041:CDS 50.0%
! ACTCTGGAAGAGAGACAGCA+AGG + chr4.4:57367745-57367764 MS.gene046041:CDS 50.0%
! CACATTGCAGGATGGTGTCA+AGG + chr4.4:57367107-57367126 MS.gene046041:CDS 50.0%
! CCAGACCTGGTACTGAATTC+TGG + chr4.4:57368863-57368882 MS.gene046041:intron 50.0%
! GATTTTGTGCTAGCCGTCAG+AGG + chr4.4:57366735-57366754 MS.gene046041:intron 50.0%
! TATCAATAATGGCTGGCCGC+AGG - chr4.4:57366834-57366853 None:intergenic 50.0%
!!! TATGGCGGATTTTTGGCCTG+CGG + chr4.4:57366815-57366834 MS.gene046041:intron 50.0%
AGATCCCAAAATGGCCGGGT+TGG + chr4.4:57367879-57367898 MS.gene046041:CDS 55.0%
!! GTGACCAACCCGGCCATTTT+GGG - chr4.4:57367886-57367905 None:intergenic 55.0%
!! TCCCTCTGGGAGTGTCTTGA+GGG + chr4.4:57367345-57367364 MS.gene046041:intron 55.0%
ACTCATCGCGGTGACCAACC+CGG - chr4.4:57367896-57367915 None:intergenic 60.0%
CCCCTCAAGACACTCCCAGA+GGG - chr4.4:57367349-57367368 None:intergenic 60.0%
CCGCCATAATGCTGCCATGG+CGG - chr4.4:57366716-57366735 None:intergenic 60.0%
CCGCCATGGCAGCATTATGG+CGG + chr4.4:57366713-57366732 MS.gene046041:intron 60.0%
GGCCGATCTCCAACGTGCAA+AGG + chr4.4:57369521-57369540 MS.gene046041:CDS 60.0%
TCCCCTCAAGACACTCCCAG+AGG - chr4.4:57367350-57367369 None:intergenic 60.0%
! GGTGACCAACCCGGCCATTT+TGG - chr4.4:57367887-57367906 None:intergenic 60.0%
!! CCCTCTGGGAGTGTCTTGAG+GGG + chr4.4:57367346-57367365 MS.gene046041:intron 60.0%
!! CTCCCTCTGGGAGTGTCTTG+AGG + chr4.4:57367344-57367363 MS.gene046041:intron 60.0%
!! GGACACTGACACACCGACTC+AGG - chr4.4:57366100-57366119 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 57365698 57369640 57365698 ID=MS.gene046041
chr4.4 mRNA 57365698 57369640 57365698 ID=MS.gene046041.t1;Parent=MS.gene046041
chr4.4 exon 57365698 57365778 57365698 ID=MS.gene046041.t1.exon1;Parent=MS.gene046041.t1
chr4.4 CDS 57365698 57365778 57365698 ID=cds.MS.gene046041.t1;Parent=MS.gene046041.t1
chr4.4 exon 57367084 57367150 57367084 ID=MS.gene046041.t1.exon2;Parent=MS.gene046041.t1
chr4.4 CDS 57367084 57367150 57367084 ID=cds.MS.gene046041.t1;Parent=MS.gene046041.t1
chr4.4 exon 57367715 57368039 57367715 ID=MS.gene046041.t1.exon3;Parent=MS.gene046041.t1
chr4.4 CDS 57367715 57368039 57367715 ID=cds.MS.gene046041.t1;Parent=MS.gene046041.t1
chr4.4 exon 57369466 57369640 57369466 ID=MS.gene046041.t1.exon4;Parent=MS.gene046041.t1
chr4.4 CDS 57369466 57369640 57369466 ID=cds.MS.gene046041.t1;Parent=MS.gene046041.t1
Gene Sequence

>MS.gene046041

ATGGAGAAAATGGAGAATGGGTTGGAGAAGGGAAATGGGTTGTCAATGTTTAGCGAGGAAGAGCTGAGAGAAATGAGTGGGGTTAGTGTTTTTGATGAATATGTTGAAGTCACGTGTGGTTGTACTAGTCATAGATATGGTGATGCTGTTGGTAGACTTAGGGTTTTTCTTAGTGGATACCTTCAAATTATTTGTGAATGCACTCCTGGTTGTGATGAAGGTCTCTCTCTCTCTCACTCCTCTCTCTCTCATCACTTACATTGTTTTTTTGTTTATGTGCATGTTGATAGTTGTGTTGTGTACACTTCTGATTAAATGCGTGTTCTGTATCCGACATGCATAAATACTTATATATAACACTGATACATGTGATTACATTGATTTTCGTACATTTTTTTACCTGAGTCGGTGTGTCAGTGTCCGTGTGTGTTAGTATTTTATAGGTTGATAGTGTATATGGTTTGGTGAAGGTTTGACTTTGATGAGTTTTGTGTTTGGAGTTTGTGCTGATATGTTGACATCTTAAGTGTATGTTGATTTGTCTCAATGAACTCCTTGGTTTGATCCTCTTTATGATCATGCTAGATGAATGTTTATTGTATGAAAATATAGAAGATTTATAATTGGCATTCTGTCTTTTTGTGAGATTAAATTCAATATGGCTTGTATTTTTGTTAAATATTAGTACTTTTCTATATAGTTACTTTATACGTATTTAATAATAACATAATGTAACCGTAGTAAGGTCCTAGGATATTTCTTCAAAGTCATCGAAATTTGCAAAGTGGAGTGTAGATTGTATAATAATTAATATCCTAAGGTATTGTTAATCTATAACATACAAGTTATGGATGTTCTTTTCTTTGATGGCACATTCTCTTATTTTATGTGTGAATGTTTATGATAGCTATTTGTATTGCAGCCTCATATTCATTCCACTTAATTTTCAGTCACTATGCACATGCAATGTCAAGTTGTACTTATTCCATGTATCCACTGCAGTGTTGTCAAAATTCCGCCATGGCAGCATTATGGCGGATTTTGTGCTAGCCGTCAGAGGCCGCAACATCTATTATATCGTCCAATTTTTCTGCCATACGTCGTAATGTCATGTTTATATGGCGGATTTTTGGCCTGCGGCCAGCCATTATTGATAACTCTGATCCACTATGTGTGTTGTTTTATTACTTGAACATTGATACATACGAGTAGAACTTGGTACAGTGTCTGTTGATGCAAAAGCACCAGTACCTCAATTTCTTATATATTTTATTACTTGAACATTGATATATACAAGTACTCAAGTAGAACTTGGTACAGTATCTGTTGATGCAAAAGGACCAGTACCTCTGCTGAGAAATGAGAATTTGTGATTTATACTGGCAGTGTACTTCGGAAATTTTGTTTGCCACATTGCAGGATGGTGTCAAGGCACTATATGACATGTGTTTAAGTAATTATGTCAACACTTTATACATGAAATATACTGACTTAAGAAAATATGAGTTATATCCTACCATACCTTCATAATTTAATTTGAAAGATCAGCAACTTGGGAAGAGATCATATGATTAAGGTTTGATGAAAATTCTAAACTTTTACTCATAAAAATATAAATAAAAGAAGATAAGAGAAATGATTTCTTGCTCCCTCTGGGAGTGTCTTGAGGGGATGAGCACAAGTTTATGCCGTTTATATGACTAATTATTGAATGTGGTGGATAATTTAGGTAAACGATCCACTTGTTAGCTTCTTCTCTTTCATTTTATTAGATGATTTTAATAATTTCAGCCAATAATTTATGATTTTGTTTTGGTCACAGTCATTCATATATCCAGTGATAGGAGCTTTATAAGTATGCCATTGTATATTTTTTTTCATGTGCTTTATGTACCCATGGTGAAAAGAAAAACTCAATTTCTGATTGTGATTCTCTATCTTACATATATGTAGTGTTAATGACATTGTTTTTCTCGTTCACGACCTTAATTTTTGCATATGATGTTTCAAATGATAGATAAGTTGACACCTGCTGCATTTGAAAAACACTCTGGAAGAGAGACAGCAAGGAAATGGAAGAATAATATCTGGGTTATAATTAATGGTGATAAGGTTCCATTGGGTAAAACAGTGCTGCTCAAATACTACAATCAAGTGGCGAAAGCTGCTAATGGTTCTCAGAGATCCCAAAATGGCCGGGTTGGTCACCGCGATGAGTTTGTTCGCTGTACTAGGTGCAACAAAGAGCGTAGATTTCGTCTGAGATCTAAAGAGGAATGCCGCATTCACCATGATGCTGTGTCAGATGCAAATTGGAAATGTTCTGATCTTCCATATGAGAAGTACGTTTATTCATCTACACTTTCACTAAGAATAAAAAATAAGTCAGCAAGTTATGCTTTTAATGTTGGTGACTTGTGTTTAATAATTTCTGTCACCGTGCTTCGAATGTAAATGTTGGTGACTTGTGTTTAATAATTTCTGTCACCGTGCTTCGAATGAACCTTGTTTGTACCAAATGGCATCTTTATTTACTTTTTTTCTATTGATAGATCTTAGAATTTGTGTTGAACCTAACTCACCATACAAAACCAGCTTGTAAGGTGAGTGATGCCTCCCACTTATAAACTCATTTTCAGACCATACATTATCCAATGTGAGACTCTTAACAATGGAAATAGTGCACGGCTGCTTTCCAAGTTAAGCCAATTCATAAGTTTGGTCTTTTCTTTTCATTTTCAAATCGTGTAGGATCTATTTTTCAAAAAAAAATCGTGTAGGATCTAAAGATATAATCCTTACTAATTTGCAGAGTGCTATACAAATAATTGATAGTCTTAATCTAGGATATCTTATATTTTTTACTCTATATCTGATTACAGACTGTGCTCTAGATTACTTTATAAAAACTTCATCAGGTATATCATATTACTGTTTTACGGCTGGGCAATTATGTATCATTGACGTGGTCTCTTTTCGGCATTGTTAAACTACATATGTACTCTTAGAACTACCAAACTATGATAAATAACTGCAAAATCTTTTGCATAAAATTTGAGGGATGAAATATATTTTACTGGTAATTTGTGGTATATGCTAATTAATTCTTAAAGTTACTAAGTCTTGGTTAGAATACAGTTTATGTTCCATATTGGAATAGTTTAACCAGACCTGGTACTGAATTCTGGGTTTATCTCAATGAAACAGCGAATCTTGCTCAAGAACATTTTGTCCCTCTAGTGATTCTCTGTGTGCACTTGAATGGATTTACCTAATACACCAATTCATGCTTATATCCTTTGGACTTGAAGCATATATCCATTCCATAATGTACTCTCGTTTCTCAAACGAGCTTATTTCTAGAACTTAGGCTGTTGGATGAAAACACAATGTTTTTTATATCTAACATTATCATTTGATCTTTCAATCGTTTAATTGTTCTGCTTTTACATTGGCAGTACTAGCTTAATTTCACAATGTGTATATCTCTATTTTTTTTATTAATTTTTTGGCCAAATTTATGGCTATTAGTTTTATAGATATGGATATCATTTGGAACTTGTGTTGCCTTTATTTTCTGTTCAACTACTGAATGGGAAGGACTCAGAGTTTGGGAACATTTCCTCAAGGAATTAGATATCTTCCTGACATAACCTACACTATTTATTTATGCACATGTGTGCTCTATTATTCAGTTCTTCAATCACCTTAATTATTACCACAAAATTGACATTTTATAGAAGCTCTTATTAATATCAAGTTTTTCAGGATAACATGCGATGATGAAGAAGAGCGAGGAAGTCGAAGAGTTTACAGAGGATGCGGCCGATCTCCAACGTGCAAAGGTTGCACTTCTTGTGTGTGCTTCGGGTGTGACATCTGCCGTTTTTCAGATTGCAGCTGCCAGACTTGTACTGACTTTACCAGCAATGTAAAAGCTTGA
Protein sequence

>MS.gene046041.t1

MEKMENGLEKGNGLSMFSEEELREMSGCTSEILFATLQDGVKALYDMCLNKLTPAAFEKHSGRETARKWKNNIWVIINGDKVPLGKTVLLKYYNQVAKAANGSQRSQNGRVGHRDEFVRCTRCNKERRFRLRSKEECRIHHDAVSDANWKCSDLPYEKITCDDEEERGSRRVYRGCGRSPTCKGCTSCVCFGCDICRFSDCSCQTCTDFTSNVKA