AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046079.t1 MTR_0008s0470 81.176 255 32 4 13 258 44 291 5.68e-136 385
MS.gene046079.t1 MTR_0008s0390 80.567 247 29 3 13 258 44 272 2.78e-128 364
MS.gene046079.t1 MTR_0251s0050 72.177 248 46 6 13 257 44 271 4.30e-106 308
MS.gene046079.t1 MTR_2g089420 38.433 268 115 7 13 237 42 302 7.38e-51 172
MS.gene046079.t1 MTR_1g076150 50.000 158 68 3 13 169 43 190 1.12e-38 135
MS.gene046079.t1 MTR_2g089450 41.011 178 76 5 13 169 43 212 1.19e-37 133
MS.gene046079.t1 MTR_1g043080 46.154 156 68 3 16 169 46 187 6.39e-37 131
MS.gene046079.t1 MTR_1g043050 47.853 163 73 6 16 175 46 199 1.04e-36 130
MS.gene046079.t1 MTR_4g100720 73.684 76 20 0 11 86 42 117 1.25e-35 125
MS.gene046079.t1 MTR_7g096930 75.676 74 18 0 16 89 46 119 3.47e-35 127
MS.gene046079.t1 MTR_7g115650 53.571 112 42 1 15 116 45 156 7.14e-35 124
MS.gene046079.t1 MTR_4g125520 66.667 84 25 1 8 88 35 118 8.64e-34 124
MS.gene046079.t1 MTR_8g027345 65.116 86 30 0 15 100 45 130 1.64e-33 123
MS.gene046079.t1 MTR_0008s0280 58.511 94 30 2 3 94 40 126 1.66e-33 121
MS.gene046079.t1 MTR_1g100653 73.239 71 19 0 16 86 46 116 5.75e-33 122
MS.gene046079.t1 MTR_3g077110 60.000 85 29 1 8 87 33 117 9.91e-33 122
MS.gene046079.t1 MTR_1g112760 58.824 85 30 1 8 87 34 118 1.02e-32 119
MS.gene046079.t1 MTR_1g085040 72.857 70 19 0 16 85 46 115 1.29e-32 122
MS.gene046079.t1 MTR_1g017000 49.593 123 54 3 16 133 47 166 1.35e-32 120
MS.gene046079.t1 MTR_1g085640 72.857 70 19 0 16 85 46 115 1.47e-32 122
MS.gene046079.t1 MTR_8g031360 69.333 75 23 0 13 87 45 119 1.66e-32 120
MS.gene046079.t1 MTR_7g110830 72.857 70 19 0 16 85 46 115 1.72e-32 122
MS.gene046079.t1 MTR_4g105130 68.056 72 23 0 16 87 46 117 1.78e-32 122
MS.gene046079.t1 MTR_4g073420 64.865 74 26 0 15 88 45 118 2.48e-32 120
MS.gene046079.t1 MTR_7g076740 72.857 70 19 0 16 85 47 116 3.43e-32 120
MS.gene046079.t1 MTR_7g117730 71.831 71 20 0 15 85 45 115 3.60e-32 119
MS.gene046079.t1 MTR_0197s0010 39.634 164 84 5 13 163 32 193 3.84e-32 118
MS.gene046079.t1 MTR_0063s0090 70.588 68 20 0 16 83 46 113 4.66e-32 117
MS.gene046079.t1 MTR_8g095390 65.385 78 23 1 15 88 45 122 5.72e-32 119
MS.gene046079.t1 MTR_5g079670 67.123 73 24 0 15 87 44 116 5.82e-32 117
MS.gene046079.t1 MTR_2g097910 71.429 70 20 0 16 85 54 123 7.47e-32 119
MS.gene046079.t1 MTR_2g064160 66.667 75 25 0 13 87 42 116 9.59e-32 119
MS.gene046079.t1 MTR_3g074520 69.444 72 22 0 16 87 46 117 1.15e-31 119
MS.gene046079.t1 MTR_7g035075 42.169 166 76 4 11 158 43 206 1.24e-31 116
MS.gene046079.t1 MTR_6g090405 60.920 87 27 1 1 87 39 118 1.28e-31 117
MS.gene046079.t1 MTR_4g102380 65.333 75 26 0 13 87 43 117 1.38e-31 117
MS.gene046079.t1 MTR_5g029840 60.000 85 34 0 15 99 45 129 1.57e-31 119
MS.gene046079.t1 MTR_3g097450 51.376 109 46 2 15 123 45 146 1.73e-31 118
MS.gene046079.t1 MTR_3g028740 71.831 71 20 0 15 85 55 125 1.77e-31 119
MS.gene046079.t1 MTR_4g065017 70.000 70 21 0 16 85 51 120 3.07e-31 118
MS.gene046079.t1 MTR_2g089620 68.493 73 23 0 15 87 45 117 3.15e-31 118
MS.gene046079.t1 MTR_6g055910 55.319 94 33 1 13 106 16 100 3.75e-31 116
MS.gene046079.t1 MTR_4g091490 68.056 72 23 0 16 87 47 118 3.92e-31 118
MS.gene046079.t1 MTR_4g478180 66.667 75 25 0 13 87 44 118 4.92e-31 118
MS.gene046079.t1 MTR_2g011660 68.056 72 23 0 16 87 47 118 5.45e-31 117
MS.gene046079.t1 MTR_1g062940 48.598 107 45 1 11 107 35 141 8.02e-31 114
MS.gene046079.t1 MTR_3g083540 61.039 77 30 0 15 91 74 150 1.32e-30 115
MS.gene046079.t1 MTR_4g082290 71.429 70 20 0 16 85 46 115 1.44e-30 117
MS.gene046079.t1 MTR_5g007370 53.061 98 42 1 13 106 43 140 1.73e-30 115
MS.gene046079.t1 MTR_4g082230 71.429 70 20 0 16 85 46 115 2.02e-30 117
MS.gene046079.t1 MTR_6g055910 57.143 91 30 1 16 106 48 129 2.09e-30 115
MS.gene046079.t1 MTR_8g020490 64.000 75 27 0 11 85 37 111 2.73e-30 114
MS.gene046079.t1 MTR_3g103570 43.333 120 67 1 15 134 46 164 3.00e-30 115
MS.gene046079.t1 MTR_8g042410 67.143 70 23 0 16 85 71 140 3.00e-30 118
MS.gene046079.t1 MTR_3g461490 66.197 71 24 0 15 85 45 115 3.50e-30 115
MS.gene046079.t1 MTR_5g042030 68.056 72 23 0 16 87 41 112 3.56e-30 114
MS.gene046079.t1 MTR_3g065440 55.102 98 38 2 13 106 43 138 3.58e-30 115
MS.gene046079.t1 MTR_1g100667 65.278 72 25 0 15 86 46 117 4.05e-30 114
MS.gene046079.t1 MTR_7g011170 52.475 101 42 2 16 112 46 144 4.38e-30 114
MS.gene046079.t1 MTR_2g067420 72.727 66 18 0 15 80 47 112 4.54e-30 115
MS.gene046079.t1 MTR_4g485530 65.753 73 25 0 15 87 45 117 4.69e-30 111
MS.gene046079.t1 MTR_5g014990 55.422 83 37 0 15 97 46 128 5.28e-30 114
MS.gene046079.t1 MTR_8g017390 63.636 77 26 1 16 90 47 123 8.05e-30 116
MS.gene046079.t1 MTR_1g110460 55.208 96 40 1 11 106 55 147 1.03e-29 114
MS.gene046079.t1 MTR_3g011610 53.191 94 43 1 16 108 71 164 1.17e-29 116
MS.gene046079.t1 MTR_4g057635 58.140 86 30 1 8 87 33 118 1.22e-29 114
MS.gene046079.t1 MTR_1g045610 55.056 89 40 0 11 99 50 138 1.39e-29 112
MS.gene046079.t1 MTR_5g078140 63.014 73 27 0 13 85 43 115 1.57e-29 113
MS.gene046079.t1 MTR_1g086530 48.673 113 49 1 11 123 62 165 1.64e-29 112
MS.gene046079.t1 MTR_8g060940 70.588 68 20 0 15 82 40 107 1.67e-29 111
MS.gene046079.t1 MTR_5g079290 64.384 73 26 0 15 87 50 122 1.83e-29 112
MS.gene046079.t1 MTR_2g099740 65.278 72 25 0 16 87 46 117 1.89e-29 114
MS.gene046079.t1 MTR_4g121460 63.380 71 26 0 15 85 45 115 2.04e-29 113
MS.gene046079.t1 MTR_1g017140 52.326 86 41 0 15 100 46 131 2.08e-29 113
MS.gene046079.t1 MTR_8g098860 65.714 70 24 0 16 85 46 115 2.15e-29 113
MS.gene046079.t1 MTR_8g017340 64.935 77 26 1 16 91 47 123 2.61e-29 115
MS.gene046079.t1 MTR_2g096380 38.065 155 79 3 11 165 35 172 2.69e-29 110
MS.gene046079.t1 MTR_6g006030 42.759 145 77 4 11 151 43 185 3.42e-29 109
MS.gene046079.t1 MTR_5g078910 65.278 72 25 0 16 87 41 112 3.94e-29 112
MS.gene046079.t1 MTR_3g052430 62.857 70 26 0 16 85 75 144 4.20e-29 115
MS.gene046079.t1 MTR_6g012690 68.571 70 22 0 16 85 46 115 4.66e-29 112
MS.gene046079.t1 MTR_2g096380 45.133 113 54 1 16 128 21 125 4.83e-29 109
MS.gene046079.t1 MTR_8g017540 61.644 73 28 0 15 87 91 163 5.10e-29 113
MS.gene046079.t1 MTR_8g017440 64.286 70 25 0 16 85 46 115 5.28e-29 112
MS.gene046079.t1 MTR_7g010210 67.143 70 23 0 16 85 46 115 5.49e-29 112
MS.gene046079.t1 MTR_7g010210 67.143 70 23 0 16 85 46 115 5.77e-29 110
MS.gene046079.t1 MTR_0001s0360 65.278 72 25 0 16 87 41 112 6.77e-29 110
MS.gene046079.t1 MTR_2g034790 61.972 71 27 0 15 85 45 115 7.09e-29 112
MS.gene046079.t1 MTR_5g078950 70.588 68 20 0 16 83 41 108 7.49e-29 110
MS.gene046079.t1 MTR_3g052450 61.429 70 27 0 16 85 74 143 7.91e-29 114
MS.gene046079.t1 MTR_8g017350 63.636 77 27 1 16 91 47 123 9.92e-29 114
MS.gene046079.t1 MTR_1g073170 52.809 89 42 0 11 99 49 137 1.01e-28 109
MS.gene046079.t1 MTR_8g017500 64.286 70 25 0 16 85 46 115 1.22e-28 111
MS.gene046079.t1 MTR_1g086510 46.400 125 52 2 11 129 50 165 1.24e-28 109
MS.gene046079.t1 MTR_4g063100 60.000 75 30 0 11 85 36 110 1.41e-28 109
MS.gene046079.t1 MTR_5g079220 63.014 73 27 0 15 87 54 126 1.54e-28 109
MS.gene046079.t1 MTR_7g111290 70.312 64 19 0 16 79 4 67 1.82e-28 110
MS.gene046079.t1 MTR_1g021230 50.526 95 47 0 16 110 91 185 1.88e-28 112
MS.gene046079.t1 MTR_4g063100 62.857 70 26 0 16 85 12 81 1.97e-28 108
MS.gene046079.t1 MTR_5g010020 71.429 63 18 0 16 78 46 108 1.98e-28 110
MS.gene046079.t1 MTR_6g009430 63.014 73 27 0 15 87 45 117 7.36e-28 109
MS.gene046079.t1 MTR_7g017260 48.958 96 45 1 15 110 60 151 8.39e-28 107
MS.gene046079.t1 MTR_7g111290 70.312 64 19 0 16 79 46 109 9.35e-28 109
MS.gene046079.t1 MTR_5g078800 63.014 73 27 0 15 87 40 112 1.10e-27 107
MS.gene046079.t1 MTR_5g078860 63.889 72 26 0 16 87 41 112 1.26e-27 108
MS.gene046079.t1 MTR_4g128670 59.494 79 26 1 8 80 33 111 2.15e-27 108
MS.gene046079.t1 MTR_7g102110 54.651 86 33 1 8 87 33 118 2.25e-27 106
MS.gene046079.t1 MTR_2g095520 59.494 79 26 1 8 80 33 111 2.33e-27 107
MS.gene046079.t1 MTR_5g079120 52.222 90 42 1 16 104 95 184 3.73e-27 107
MS.gene046079.t1 MTR_7g087130 65.714 70 24 0 16 85 46 115 5.43e-27 107
MS.gene046079.t1 MTR_0140s0030 62.857 70 26 0 16 85 47 116 9.36e-27 106
MS.gene046079.t1 MTR_0489s0020 62.857 70 26 0 16 85 47 116 9.36e-27 106
MS.gene046079.t1 MTR_4g097570 50.000 92 46 0 15 106 46 137 1.55e-26 105
MS.gene046079.t1 MTR_4g097570 50.000 92 46 0 15 106 47 138 1.58e-26 105
MS.gene046079.t1 MTR_3g039990 62.857 70 26 0 16 85 47 116 2.08e-26 105
MS.gene046079.t1 MTR_6g012180 67.692 65 21 0 16 80 46 110 2.18e-26 105
MS.gene046079.t1 MTR_0247s0040 62.319 69 26 0 15 83 40 108 1.52e-25 99.4
MS.gene046079.t1 MTR_0193s0090 50.549 91 44 1 15 104 40 130 4.79e-25 99.0
MS.gene046079.t1 MTR_1g083630 58.571 70 29 0 16 85 46 115 2.14e-24 102
MS.gene046079.t1 MTR_2g088170 64.286 70 25 0 16 85 63 132 2.67e-24 101
MS.gene046079.t1 MTR_5g078930 49.462 93 46 1 15 106 42 134 2.90e-24 97.1
MS.gene046079.t1 MTR_2g033170 47.788 113 50 1 11 123 53 156 5.28e-24 99.0
MS.gene046079.t1 MTR_5g016510 39.831 118 64 1 18 135 38 148 1.81e-23 97.1
MS.gene046079.t1 MTR_4g019370 40.164 122 48 3 18 114 71 192 2.43e-23 97.4
MS.gene046079.t1 MTR_4g123040 61.842 76 29 0 11 86 53 128 3.38e-23 96.3
MS.gene046079.t1 MTR_7g109320 62.500 72 27 0 15 86 45 116 5.17e-23 96.7
MS.gene046079.t1 MTR_3g101290 58.571 70 29 0 17 86 69 138 8.39e-23 93.6
MS.gene046079.t1 MTR_5g062790 45.000 100 47 3 15 106 42 141 1.41e-22 94.4
MS.gene046079.t1 MTR_6g015455 55.844 77 33 1 18 94 38 113 1.60e-22 97.1
MS.gene046079.t1 MTR_8g006470 56.944 72 30 1 16 86 44 115 4.31e-22 92.8
MS.gene046079.t1 MTR_6g074860 59.701 67 27 0 18 84 37 103 5.16e-22 91.7
MS.gene046079.t1 MTR_4g094982 53.623 69 32 0 18 86 38 106 7.53e-22 92.0
MS.gene046079.t1 MTR_5g049190 46.053 76 39 1 9 84 45 118 1.54e-21 90.5
MS.gene046079.t1 MTR_5g041570 55.072 69 31 0 17 85 166 234 2.73e-21 92.4
MS.gene046079.t1 MTR_6g027340 39.130 115 65 2 18 127 49 163 3.17e-21 89.0
MS.gene046079.t1 MTR_7g451170 35.938 128 76 2 18 141 224 349 3.91e-21 92.0
MS.gene046079.t1 MTR_4g029540 41.538 130 67 5 16 139 44 170 6.19e-21 89.7
MS.gene046079.t1 MTR_5g070020 47.826 69 36 0 17 85 154 222 9.59e-21 90.1
MS.gene046079.t1 MTR_4g128190 51.429 70 33 1 16 84 32 101 1.00e-20 88.2
MS.gene046079.t1 MTR_3g045430 54.286 70 32 0 16 85 47 116 1.26e-20 89.0
MS.gene046079.t1 MTR_4g082040 54.412 68 31 0 18 85 138 205 1.37e-20 90.5
MS.gene046079.t1 MTR_3g463400 48.529 68 35 0 18 85 166 233 5.29e-20 89.0
MS.gene046079.t1 MTR_5g088080 47.368 76 37 2 16 90 46 119 8.39e-20 86.3
MS.gene046079.t1 MTR_5g088150 47.368 76 37 2 16 90 46 119 8.39e-20 86.3
MS.gene046079.t1 MTR_5g488210 47.368 76 37 2 16 90 46 119 8.39e-20 86.3
MS.gene046079.t1 MTR_5g088640 47.368 76 37 2 16 90 46 119 9.07e-20 86.3
MS.gene046079.t1 MTR_6g027360 37.594 133 73 4 18 144 111 239 9.58e-20 87.0
MS.gene046079.t1 MTR_3g077650 44.156 77 41 1 9 85 207 281 1.08e-19 88.2
MS.gene046079.t1 MTR_5g488170 47.368 76 37 2 16 90 46 119 1.31e-19 85.5
MS.gene046079.t1 MTR_7g037260 50.725 69 34 0 17 85 177 245 1.50e-19 87.0
MS.gene046079.t1 MTR_5g088610 35.294 119 69 2 15 125 42 160 1.55e-19 87.0
MS.gene046079.t1 MTR_4g105660 48.529 68 35 0 18 85 213 280 1.81e-19 87.4
MS.gene046079.t1 MTR_6g027370 37.190 121 62 2 17 137 131 237 2.07e-19 86.7
MS.gene046079.t1 MTR_4g088015 39.583 96 49 1 18 113 254 340 4.30e-19 86.3
MS.gene046079.t1 MTR_3g110028 49.351 77 37 1 9 85 111 185 4.35e-19 87.0
MS.gene046079.t1 MTR_7g061330 50.649 77 36 1 9 85 139 213 5.12e-19 86.3
MS.gene046079.t1 MTR_7g461410 50.649 77 36 1 9 85 139 213 5.12e-19 86.3
MS.gene046079.t1 MTR_1g026870 49.351 77 37 1 9 85 111 185 5.16e-19 86.7
MS.gene046079.t1 MTR_7g061330 47.191 89 41 1 3 85 89 177 6.70e-19 85.9
MS.gene046079.t1 MTR_7g035350 39.286 112 58 3 18 127 258 361 8.61e-19 85.5
MS.gene046079.t1 MTR_5g082910 53.030 66 31 0 17 82 51 116 2.47e-18 82.8
MS.gene046079.t1 MTR_7g450950 37.113 97 54 3 17 113 189 278 3.97e-18 82.8
MS.gene046079.t1 MTR_1g057980 36.207 116 62 3 17 125 112 222 6.89e-18 81.6
MS.gene046079.t1 MTR_7g086960 55.882 68 30 0 18 85 122 189 7.34e-18 82.0
MS.gene046079.t1 MTR_3g089045 55.882 68 30 0 18 85 49 116 3.33e-17 79.7
MS.gene046079.t1 MTR_6g055910 50.746 67 24 1 40 106 2 59 1.21e-15 73.9
MS.gene046079.t1 MTR_7g037130 36.792 106 59 2 17 116 177 280 1.37e-15 75.9
MS.gene046079.t1 MTR_5g010650 52.459 61 29 0 18 78 143 203 1.91e-15 75.9
MS.gene046079.t1 MTR_5g007300 70.455 44 13 0 15 58 97 140 2.01e-15 71.6
MS.gene046079.t1 MTR_1g085880 35.065 154 81 5 15 153 45 194 3.51e-14 69.3
MS.gene046079.t1 MTR_7g061550 46.154 65 35 0 16 80 41 105 3.63e-14 71.6
MS.gene046079.t1 MTR_2g096380 38.202 89 47 1 40 128 1 81 3.78e-14 68.9
MS.gene046079.t1 MTR_1g085770 35.714 154 80 6 15 153 45 194 9.18e-14 70.1
MS.gene046079.t1 MTR_8g468380 41.379 87 49 1 7 93 46 130 3.54e-13 68.9
MS.gene046079.t1 MTR_5g038910 46.970 66 35 0 21 86 62 127 4.31e-13 68.9
MS.gene046079.t1 MTR_4g063100 56.522 46 20 0 40 85 1 46 4.37e-13 66.2
MS.gene046079.t1 MTR_5g038910 46.970 66 35 0 21 86 62 127 7.35e-13 67.8
MS.gene046079.t1 MTR_2g088730 58.974 39 16 0 40 78 34 72 1.31e-11 59.7
MS.gene046079.t1 MTR_1g076150 40.517 116 58 3 55 169 33 138 3.34e-11 61.6
MS.gene046079.t1 MTR_1g008970 35.294 102 59 2 4 100 107 206 3.92e-11 62.0
MS.gene046079.t1 MTR_0023s0210 53.488 43 20 0 16 58 41 83 6.73e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046079.t1 AT3G23250 37.229 231 117 6 16 218 46 276 1.38e-37 134
MS.gene046079.t1 AT2G31180 48.125 160 69 3 15 174 45 190 2.23e-37 132
MS.gene046079.t1 AT5G14750 64.706 85 30 0 1 85 1 85 5.11e-36 126
MS.gene046079.t1 AT4G38620 53.211 109 49 1 15 123 45 151 4.07e-35 127
MS.gene046079.t1 AT1G22640 41.250 160 73 4 15 165 45 192 1.95e-34 125
MS.gene046079.t1 AT5G35550 70.667 75 22 0 11 85 46 120 2.44e-34 124
MS.gene046079.t1 AT5G14750 69.333 75 23 0 11 85 45 119 2.72e-34 123
MS.gene046079.t1 AT1G06180 45.161 155 80 2 13 165 43 194 3.53e-34 124
MS.gene046079.t1 AT1G79180 66.265 83 28 0 16 98 48 130 8.48e-34 124
MS.gene046079.t1 AT1G79180 66.265 83 28 0 16 98 81 163 1.22e-33 124
MS.gene046079.t1 AT3G27920 59.302 86 35 0 15 100 47 132 1.86e-33 121
MS.gene046079.t1 AT3G13540 40.936 171 77 5 15 168 56 219 2.39e-33 122
MS.gene046079.t1 AT5G35550 71.622 74 21 0 12 85 44 117 2.39e-33 122
MS.gene046079.t1 AT1G16490 71.429 70 20 0 16 85 48 117 3.21e-33 122
MS.gene046079.t1 AT4G28110 69.444 72 22 0 16 87 46 117 5.61e-33 121
MS.gene046079.t1 AT5G40330 68.000 75 24 0 11 85 41 115 6.35e-33 120
MS.gene046079.t1 AT5G16770 69.444 72 22 0 16 87 46 117 1.48e-32 121
MS.gene046079.t1 AT5G16770 69.444 72 22 0 16 87 46 117 1.48e-32 121
MS.gene046079.t1 AT5G16770 69.444 72 22 0 16 87 46 117 1.99e-32 121
MS.gene046079.t1 AT5G16770 69.444 72 22 0 16 87 46 117 1.99e-32 121
MS.gene046079.t1 AT3G61250 67.105 76 25 0 12 87 42 117 2.54e-32 120
MS.gene046079.t1 AT4G01680 50.000 118 49 2 15 128 45 156 2.91e-32 119
MS.gene046079.t1 AT5G12870 70.423 71 21 0 15 85 51 121 3.62e-32 119
MS.gene046079.t1 AT3G02940 69.444 72 22 0 16 87 46 117 4.01e-32 120
MS.gene046079.t1 AT2G16720 67.123 73 24 0 15 87 45 117 4.15e-32 119
MS.gene046079.t1 AT4G01680 56.731 104 33 2 15 106 45 148 5.88e-32 120
MS.gene046079.t1 AT5G26660 62.651 83 26 1 3 85 7 84 6.26e-32 120
MS.gene046079.t1 AT3G02940 69.444 72 22 0 16 87 46 117 6.60e-32 119
MS.gene046079.t1 AT3G02940 69.444 72 22 0 16 87 46 117 6.60e-32 119
MS.gene046079.t1 AT4G01680 50.000 118 49 2 15 128 57 168 7.07e-32 120
MS.gene046079.t1 AT3G11440 50.000 106 41 1 15 108 74 179 1.01e-31 122
MS.gene046079.t1 AT5G06100 67.606 71 23 0 15 85 65 135 1.02e-31 121
MS.gene046079.t1 AT3G11440 50.000 106 41 1 15 108 74 179 1.64e-31 122
MS.gene046079.t1 AT3G11440 50.000 106 41 1 15 108 74 179 1.64e-31 122
MS.gene046079.t1 AT3G11440 50.000 106 41 1 15 108 74 179 1.64e-31 122
MS.gene046079.t1 AT5G06100 67.606 71 23 0 15 85 65 135 1.88e-31 121
MS.gene046079.t1 AT5G06100 67.606 71 23 0 15 85 65 135 1.88e-31 121
MS.gene046079.t1 AT5G06100 67.606 71 23 0 15 85 65 135 1.88e-31 121
MS.gene046079.t1 AT5G06100 67.606 71 23 0 15 85 65 135 1.88e-31 121
MS.gene046079.t1 AT5G65230 69.444 72 22 0 16 87 46 117 1.91e-31 118
MS.gene046079.t1 AT3G12820 68.571 70 22 0 18 87 2 71 1.93e-31 115
MS.gene046079.t1 AT1G74430 69.014 71 22 0 15 85 45 115 2.13e-31 117
MS.gene046079.t1 AT4G05100 68.056 72 23 0 16 87 47 118 2.27e-31 118
MS.gene046079.t1 AT4G09460 63.014 73 27 0 15 87 45 117 3.18e-31 115
MS.gene046079.t1 AT5G62320 64.000 75 27 0 13 87 51 125 3.86e-31 115
MS.gene046079.t1 AT5G26660 67.123 73 24 0 13 85 43 115 4.04e-31 118
MS.gene046079.t1 AT3G12820 67.123 73 24 0 15 87 47 119 4.14e-31 115
MS.gene046079.t1 AT5G10280 68.056 72 23 0 16 87 46 117 4.70e-31 117
MS.gene046079.t1 AT5G54230 65.753 73 25 0 15 87 45 117 4.77e-31 117
MS.gene046079.t1 AT5G07700 65.789 76 26 0 16 91 46 121 4.84e-31 117
MS.gene046079.t1 AT5G07700 65.789 76 26 0 16 91 46 121 4.84e-31 117
MS.gene046079.t1 AT4G34990 52.941 102 41 1 15 109 45 146 5.02e-31 116
MS.gene046079.t1 AT4G26930 66.667 69 23 0 16 84 53 121 6.33e-31 118
MS.gene046079.t1 AT3G01530 64.865 74 26 0 11 84 54 127 7.36e-31 114
MS.gene046079.t1 AT3G01140 69.863 73 22 0 15 87 45 117 7.80e-31 117
MS.gene046079.t1 AT1G09540 46.099 141 70 1 16 156 46 180 8.61e-31 117
MS.gene046079.t1 AT1G35515 58.442 77 32 0 15 91 45 121 8.76e-31 114
MS.gene046079.t1 AT5G52600 71.831 71 20 0 15 85 45 115 8.81e-31 114
MS.gene046079.t1 AT3G49690 57.955 88 31 1 7 88 32 119 1.01e-30 116
MS.gene046079.t1 AT4G12350 64.000 75 27 0 13 87 43 117 1.17e-30 115
MS.gene046079.t1 AT4G21440 68.056 72 23 0 16 87 46 117 1.21e-30 117
MS.gene046079.t1 AT3G01140 69.863 73 22 0 15 87 88 160 1.41e-30 117
MS.gene046079.t1 AT1G57560 65.278 72 25 0 16 87 46 117 1.52e-30 115
MS.gene046079.t1 AT1G57560 65.278 72 25 0 16 87 46 117 1.72e-30 115
MS.gene046079.t1 AT1G56160 63.095 84 24 1 2 85 41 117 2.66e-30 115
MS.gene046079.t1 AT4G22680 61.333 75 29 0 13 87 43 117 3.36e-30 114
MS.gene046079.t1 AT5G55020 66.667 69 23 0 16 84 60 128 3.84e-30 118
MS.gene046079.t1 AT3G12720 62.500 72 27 0 16 87 56 127 4.23e-30 114
MS.gene046079.t1 AT5G15310 68.056 72 23 0 16 87 46 117 4.74e-30 115
MS.gene046079.t1 AT5G16600 52.427 103 41 3 13 108 40 141 4.83e-30 115
MS.gene046079.t1 AT5G15310 67.123 73 24 0 15 87 45 117 5.30e-30 114
MS.gene046079.t1 AT3G08500 67.606 71 23 0 15 85 63 133 5.75e-30 115
MS.gene046079.t1 AT5G15310 67.123 73 24 0 16 88 46 118 6.23e-30 112
MS.gene046079.t1 AT4G17785 61.644 73 28 0 15 87 46 118 7.20e-30 115
MS.gene046079.t1 AT4G17785 62.500 72 27 0 16 87 47 118 7.44e-30 115
MS.gene046079.t1 AT5G57620 56.977 86 31 1 8 87 33 118 9.03e-30 114
MS.gene046079.t1 AT3G13890 65.278 72 25 0 16 87 46 117 1.22e-29 114
MS.gene046079.t1 AT5G07690 63.158 76 28 0 16 91 46 121 1.25e-29 114
MS.gene046079.t1 AT5G61420 61.842 76 29 0 16 91 46 121 1.41e-29 114
MS.gene046079.t1 AT3G13890 64.384 73 26 0 15 87 54 126 1.46e-29 114
MS.gene046079.t1 AT5G65790 55.682 88 33 1 7 88 32 119 1.53e-29 114
MS.gene046079.t1 AT1G18570 67.123 73 24 0 15 87 46 118 1.71e-29 114
MS.gene046079.t1 AT2G32460 64.286 70 25 0 16 85 40 109 1.80e-29 115
MS.gene046079.t1 AT5G14340 61.039 77 30 0 9 85 51 127 1.81e-29 112
MS.gene046079.t1 AT2G47460 64.789 71 25 0 15 85 45 115 1.81e-29 114
MS.gene046079.t1 AT2G32460 64.286 70 25 0 16 85 52 121 1.88e-29 115
MS.gene046079.t1 AT3G27810 62.500 72 27 0 13 84 2 73 2.10e-29 109
MS.gene046079.t1 AT5G56110 66.197 71 24 0 15 85 45 115 2.20e-29 113
MS.gene046079.t1 AT5G60890 64.789 71 25 0 15 85 45 115 2.55e-29 112
MS.gene046079.t1 AT1G34670 66.667 72 24 0 16 87 46 117 2.91e-29 113
MS.gene046079.t1 AT3G62610 64.789 71 25 0 15 85 45 115 3.59e-29 113
MS.gene046079.t1 AT3G24310 56.180 89 39 0 11 99 47 135 4.01e-29 111
MS.gene046079.t1 AT1G63910 64.789 71 25 0 15 85 45 115 5.04e-29 113
MS.gene046079.t1 AT4G13480 56.180 89 39 0 11 99 35 123 5.10e-29 110
MS.gene046079.t1 AT5G23000 58.140 86 30 2 8 87 33 118 6.77e-29 112
MS.gene046079.t1 AT1G66230 64.789 71 25 0 15 85 45 115 6.82e-29 110
MS.gene046079.t1 AT1G18710 62.500 72 27 0 14 85 44 115 7.07e-29 110
MS.gene046079.t1 AT5G40350 63.889 72 26 0 16 87 6 77 7.93e-29 107
MS.gene046079.t1 AT3G27810 62.162 74 28 0 11 84 49 122 8.01e-29 109
MS.gene046079.t1 AT1G68320 61.842 76 29 0 11 86 48 123 9.60e-29 110
MS.gene046079.t1 AT4G37780 56.977 86 31 1 8 87 33 118 1.12e-28 110
MS.gene046079.t1 AT5G40350 61.039 77 30 0 11 87 46 122 1.34e-28 108
MS.gene046079.t1 AT3G46130 58.442 77 32 0 10 86 5 81 1.46e-28 108
MS.gene046079.t1 AT1G74650 65.278 72 25 0 16 87 46 117 1.53e-28 111
MS.gene046079.t1 AT5G59780 59.211 76 31 0 11 86 37 112 1.73e-28 108
MS.gene046079.t1 AT5G49330 62.500 72 27 0 14 85 44 115 1.75e-28 111
MS.gene046079.t1 AT1G08810 46.457 127 62 3 16 137 46 171 2.14e-28 109
MS.gene046079.t1 AT5G59780 58.750 80 32 1 8 86 12 91 2.93e-28 107
MS.gene046079.t1 AT3G46130 59.211 76 31 0 11 86 38 113 3.16e-28 108
MS.gene046079.t1 AT2G36890 56.977 86 31 1 8 87 33 118 3.23e-28 109
MS.gene046079.t1 AT1G74080 66.667 69 23 0 16 84 46 114 3.83e-28 110
MS.gene046079.t1 AT3G46130 61.972 71 27 0 16 86 21 91 4.96e-28 107
MS.gene046079.t1 AT3G23250 39.877 163 77 4 28 169 1 163 6.16e-28 107
MS.gene046079.t1 AT2G36890 56.977 86 31 1 8 87 74 159 7.30e-28 109
MS.gene046079.t1 AT3G47600 64.286 70 25 0 16 85 40 109 7.37e-28 109
MS.gene046079.t1 AT2G47190 62.500 72 27 0 15 86 53 124 7.53e-28 108
MS.gene046079.t1 AT1G25340 60.526 76 30 0 11 86 47 122 8.45e-28 108
MS.gene046079.t1 AT2G26960 63.768 69 25 0 16 84 54 122 9.56e-28 110
MS.gene046079.t1 AT3G47600 64.286 70 25 0 16 85 46 115 1.14e-27 108
MS.gene046079.t1 AT3G28470 67.692 65 21 0 16 80 46 110 1.17e-27 108
MS.gene046079.t1 AT3G28910 64.286 70 25 0 16 85 46 115 2.33e-27 107
MS.gene046079.t1 AT3G30210 46.018 113 52 2 11 122 56 160 2.37e-27 106
MS.gene046079.t1 AT5G62470 64.286 70 25 0 16 85 46 115 3.36e-27 107
MS.gene046079.t1 AT1G66370 63.380 71 26 0 15 85 41 111 4.19e-27 105
MS.gene046079.t1 AT5G62470 64.706 68 24 0 18 85 47 114 1.01e-26 106
MS.gene046079.t1 AT5G52260 68.571 70 22 0 16 85 46 115 1.41e-26 104
MS.gene046079.t1 AT1G48000 58.904 73 30 0 14 86 64 136 2.00e-26 103
MS.gene046079.t1 AT1G25340 64.179 67 24 0 20 86 51 117 2.15e-26 104
MS.gene046079.t1 AT4G25560 64.286 70 25 0 16 85 44 113 2.68e-26 104
MS.gene046079.t1 AT1G25340 64.179 67 24 0 20 86 51 117 4.59e-26 103
MS.gene046079.t1 AT3G48920 60.870 69 27 0 16 84 52 120 6.49e-26 102
MS.gene046079.t1 AT3G53200 59.155 71 29 0 15 85 9 79 1.01e-25 100
MS.gene046079.t1 AT3G53200 54.762 84 31 1 2 85 36 112 1.50e-25 101
MS.gene046079.t1 AT1G22640 37.415 147 71 4 28 165 1 135 7.75e-25 98.2
MS.gene046079.t1 AT5G49620 47.788 113 50 1 11 123 55 158 2.00e-24 99.8
MS.gene046079.t1 AT5G14750 68.966 58 18 0 28 85 1 58 2.09e-24 95.5
MS.gene046079.t1 AT5G14750 68.966 58 18 0 28 85 1 58 2.09e-24 95.5
MS.gene046079.t1 AT3G06490 48.696 115 44 2 15 123 46 151 2.95e-24 99.4
MS.gene046079.t1 AT1G66380 64.384 73 26 0 13 85 6 78 9.70e-24 92.4
MS.gene046079.t1 AT1G71030 56.716 67 29 0 21 87 5 71 7.09e-23 92.4
MS.gene046079.t1 AT1G71030 54.054 74 34 0 14 87 12 85 8.78e-23 92.8
MS.gene046079.t1 AT1G66380 64.789 71 25 0 15 85 41 111 2.41e-22 90.1
MS.gene046079.t1 AT4G33450 54.795 73 33 0 18 90 52 124 2.83e-22 92.8
MS.gene046079.t1 AT1G17950 58.571 70 29 0 17 86 37 106 4.47e-22 92.0
MS.gene046079.t1 AT3G09230 56.338 71 31 0 18 88 88 158 4.54e-22 94.4
MS.gene046079.t1 AT4G37260 54.286 70 32 0 17 86 45 114 8.96e-22 92.8
MS.gene046079.t1 AT3G27785 43.878 98 48 2 17 113 221 312 1.38e-21 93.6
MS.gene046079.t1 AT1G69560 55.882 68 30 0 18 85 140 207 1.54e-21 92.0
MS.gene046079.t1 AT1G69560 55.882 68 30 0 18 85 156 223 1.60e-21 92.4
MS.gene046079.t1 AT1G56650 61.972 71 27 0 15 85 41 111 2.96e-21 89.7
MS.gene046079.t1 AT1G66390 63.380 71 26 0 15 85 41 111 3.17e-21 89.7
MS.gene046079.t1 AT1G26780 55.072 69 31 0 17 85 130 198 3.19e-21 91.7
MS.gene046079.t1 AT1G26780 55.882 68 30 0 18 85 131 198 3.25e-21 90.5
MS.gene046079.t1 AT3G55730 41.379 116 49 2 18 124 89 194 4.36e-21 91.7
MS.gene046079.t1 AT2G25230 51.389 72 33 1 18 89 59 128 5.08e-21 89.0
MS.gene046079.t1 AT5G67300 54.286 70 32 0 17 86 38 107 6.71e-21 90.1
MS.gene046079.t1 AT5G49620 42.520 127 50 2 11 123 55 172 8.37e-21 90.1
MS.gene046079.t1 AT5G40360 50.746 67 33 0 18 84 191 257 1.45e-20 89.7
MS.gene046079.t1 AT5G11510 55.882 68 30 0 18 85 114 181 1.55e-20 91.3
MS.gene046079.t1 AT5G11510 55.882 68 30 0 18 85 114 181 1.55e-20 91.3
MS.gene046079.t1 AT5G11510 55.882 68 30 0 18 85 114 181 1.55e-20 91.3
MS.gene046079.t1 AT5G11510 40.000 110 59 2 18 127 114 216 1.92e-20 90.9
MS.gene046079.t1 AT2G23290 52.857 70 33 0 17 86 45 114 2.07e-20 88.6
MS.gene046079.t1 AT5G11510 40.000 110 59 2 18 127 114 216 2.14e-20 90.9
MS.gene046079.t1 AT3G60460 54.167 72 32 1 16 86 45 116 2.86e-20 88.2
MS.gene046079.t1 AT2G39880 53.521 71 33 0 18 88 83 153 2.95e-20 89.0
MS.gene046079.t1 AT3G50060 44.578 83 46 0 18 100 39 121 3.97e-20 87.8
MS.gene046079.t1 AT2G26950 44.318 88 44 2 22 106 56 141 5.21e-20 88.6
MS.gene046079.t1 AT5G11050 29.954 217 119 8 18 213 138 342 6.62e-20 88.6
MS.gene046079.t1 AT4G18770 48.529 68 35 0 18 85 250 317 8.96e-20 88.2
MS.gene046079.t1 AT5G17800 52.857 70 33 0 16 85 124 193 1.09e-19 87.0
MS.gene046079.t1 AT1G73410 60.294 68 27 0 18 85 39 106 4.26e-19 84.0
MS.gene046079.t1 AT3G09370 52.174 69 33 0 18 86 168 236 5.05e-19 86.3
MS.gene046079.t1 AT3G09370 52.174 69 33 0 18 86 163 231 5.15e-19 86.3
MS.gene046079.t1 AT5G58850 45.588 68 37 0 18 85 138 205 5.56e-19 85.9
MS.gene046079.t1 AT3G09370 52.174 69 33 0 18 86 176 244 6.63e-19 86.3
MS.gene046079.t1 AT5G02320 49.351 77 37 1 9 85 153 227 6.98e-19 85.9
MS.gene046079.t1 AT5G02320 49.351 77 37 1 9 85 153 227 6.98e-19 85.9
MS.gene046079.t1 AT5G02320 49.351 77 37 1 9 85 93 167 8.55e-19 85.5
MS.gene046079.t1 AT1G73410 59.420 69 28 0 17 85 38 106 8.73e-19 82.4
MS.gene046079.t1 AT4G32730 51.471 68 33 0 18 85 120 187 1.35e-18 85.5
MS.gene046079.t1 AT4G32730 51.471 68 33 0 18 85 120 187 1.35e-18 85.5
MS.gene046079.t1 AT4G32730 51.471 68 33 0 18 85 120 187 1.35e-18 85.5
MS.gene046079.t1 AT4G32730 51.471 68 33 0 18 85 120 187 1.35e-18 85.5
MS.gene046079.t1 AT4G32730 51.471 68 33 0 18 85 120 187 1.48e-18 85.1
MS.gene046079.t1 AT3G29020 50.000 68 34 0 18 85 98 165 1.69e-18 82.0
MS.gene046079.t1 AT3G29020 50.000 68 34 0 18 85 100 167 2.06e-18 83.2
MS.gene046079.t1 AT1G18960 47.500 80 36 2 16 91 41 118 9.31e-18 81.3
MS.gene046079.t1 AT5G40430 45.833 72 37 1 18 89 86 155 2.07e-17 79.7
MS.gene046079.t1 AT4G00540 50.000 68 34 0 18 85 139 206 3.99e-17 80.5
MS.gene046079.t1 AT4G00540 50.000 68 34 0 18 85 137 204 5.34e-17 80.1
MS.gene046079.t1 AT2G37630 42.105 95 49 1 16 104 38 132 1.36e-16 78.6
MS.gene046079.t1 AT5G39700 45.783 83 35 1 18 90 89 171 9.31e-16 73.9
MS.gene046079.t1 AT5G59780 57.447 47 20 0 40 86 1 47 4.57e-14 68.6
MS.gene046079.t1 AT3G46130 57.447 47 20 0 40 86 1 47 7.13e-14 68.6
MS.gene046079.t1 AT1G14350 43.243 74 42 0 21 94 61 134 1.45e-13 70.1
MS.gene046079.t1 AT1G14350 43.243 74 42 0 21 94 61 134 1.45e-13 70.1
MS.gene046079.t1 AT2G02820 43.243 74 42 0 21 94 66 139 1.58e-13 70.1
MS.gene046079.t1 AT2G02820 43.243 74 42 0 21 94 66 139 1.62e-13 70.1
MS.gene046079.t1 AT2G02820 43.243 74 42 0 21 94 66 139 2.10e-13 69.3
MS.gene046079.t1 AT4G25560 65.116 43 15 0 43 85 5 47 3.67e-13 67.0
MS.gene046079.t1 AT1G14350 43.478 69 39 0 26 94 23 91 1.29e-11 64.3
MS.gene046079.t1 AT1G14350 43.478 69 39 0 26 94 23 91 1.29e-11 64.3

Find 54 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTACTTTGGATGATTT+TGG 0.124584 4.4:+56616637 MS.gene046079:CDS
CTATAGTATATGATGATATT+TGG 0.196587 4.4:+56616944 MS.gene046079:CDS
AATTCACTAGATGATGAAAA+TGG 0.245627 4.4:-56616589 None:intergenic
CGGAGGAGTAATTTGGTAAT+TGG 0.263890 4.4:-56616527 None:intergenic
ATTGCTTATGTCACTAGATA+TGG 0.291146 4.4:+56616061 None:intergenic
ATCCATAACAAAACTTTCAT+TGG 0.308172 4.4:-56616785 None:intergenic
GATGATGAAAATGGGGATAA+TGG 0.321565 4.4:-56616580 None:intergenic
TTTGTTATGGATAACGATTT+TGG 0.329855 4.4:+56616796 MS.gene046079:CDS
AACTAGCCGGAGGAGTAATT+TGG 0.335977 4.4:-56616534 None:intergenic
ACTTCATTATCTGTTCTTCC+AGG 0.339491 4.4:-56616394 None:intergenic
AAGATGTGGATGAAAACTTT+TGG 0.346585 4.4:+56616680 MS.gene046079:CDS
CTAGATATGGTTGCTGGAAT+TGG 0.347558 4.4:+56616074 MS.gene046079:CDS
GACCATTGGTGTCTAAGATC+TGG 0.389533 4.4:-56616558 None:intergenic
ATTCACTAGATGATGAAAAT+GGG 0.403181 4.4:-56616588 None:intergenic
ATATCACAGTTCCACTACTT+TGG 0.405915 4.4:+56616627 MS.gene046079:CDS
TGAGGTGGCTGAATTATCTA+AGG 0.418133 4.4:+56616269 MS.gene046079:CDS
ACCATTGCGGCCGAGTTACC+TGG 0.444329 4.4:+56616376 MS.gene046079:CDS
ATCTATAGCTCTCTTCTTGA+GGG 0.445379 4.4:-56616437 None:intergenic
ATGTCACTAGATATGGTTGC+TGG 0.454705 4.4:+56616068 MS.gene046079:CDS
ACTTTCATTGGACGAATGAC+CGG 0.459504 4.4:-56616773 None:intergenic
TACCTGCAAACTTGGGAAGT+TGG 0.466120 4.4:-56616099 None:intergenic
ATCTGTTCTTCCAGGTAACT+CGG 0.488002 4.4:-56616386 None:intergenic
ATTGCTGACATCTTTGCCGT+TGG 0.490043 4.4:+56616906 MS.gene046079:CDS
TACTATTCCACTTGGTGTGT+TGG 0.498616 4.4:-56616716 None:intergenic
CTTTCATTGGACGAATGACC+GGG 0.500764 4.4:-56616772 None:intergenic
CTAAGGCCTAATATCAAAAG+AGG 0.501825 4.4:+56616286 MS.gene046079:CDS
TGGGACATGTCATCCGCATA+TGG 0.502793 4.4:-56616871 None:intergenic
TCTTGAGGGAAGTGTGCCAA+TGG 0.503047 4.4:-56616423 None:intergenic
CAATTACCAAATTACTCCTC+CGG 0.510964 4.4:+56616528 MS.gene046079:CDS
TTTCAGGTCTTTCAAGGTGT+GGG 0.511467 4.4:+56616233 MS.gene046079:intron
GGATTCATTTATAAAAGATG+TGG 0.515547 4.4:+56616666 MS.gene046079:CDS
ATTTCAGGTCTTTCAAGGTG+TGG 0.520974 4.4:+56616232 MS.gene046079:intron
TCCAGGTAACTCGGCCGCAA+TGG 0.530910 4.4:-56616377 None:intergenic
ACCATTGGTGTCTAAGATCT+GGG 0.533225 4.4:-56616557 None:intergenic
AAACTTCACTCAAGAAGAAG+AGG 0.534788 4.4:+56616309 MS.gene046079:CDS
CCCAAAATCATCCAAAGTAG+TGG 0.535258 4.4:-56616638 None:intergenic
TATCTATAGCTCTCTTCTTG+AGG 0.540945 4.4:-56616438 None:intergenic
ATAATGAAGTGAAGAACCAT+TGG 0.556377 4.4:+56616407 MS.gene046079:CDS
GGATATATCTCTCCCTTGTG+TGG 0.558281 4.4:-56616506 None:intergenic
TCTAAGATCTGGGAACTAGC+CGG 0.568668 4.4:-56616547 None:intergenic
GATATTTCCAACACACCAAG+TGG 0.595510 4.4:+56616709 MS.gene046079:CDS
AAAGATGTCAGCAATTGTGT+TGG 0.616881 4.4:-56616898 None:intergenic
TTCACTAGATGATGAAAATG+GGG 0.618182 4.4:-56616587 None:intergenic
AAATGGGGATAATGGACCAT+TGG 0.619189 4.4:-56616572 None:intergenic
TCCCAGATCTTAGACACCAA+TGG 0.629680 4.4:+56616556 MS.gene046079:CDS
GTGGGAAGAGTTGTAGATTG+AGG 0.631661 4.4:+56616251 MS.gene046079:CDS
TCAGCAATTGTGTTGGAACG+TGG 0.632729 4.4:-56616891 None:intergenic
GACATAATTGAATCCACACA+AGG 0.645918 4.4:+56616493 MS.gene046079:CDS
GAATAGATGGTCGACCATTG+CGG 0.650619 4.4:+56616363 MS.gene046079:CDS
GGAACTGTGATATGAAGATG+TGG 0.659577 4.4:-56616617 None:intergenic
GGAAGAGTTGTAGATTGAGG+TGG 0.677125 4.4:+56616254 MS.gene046079:CDS
AAGATCTGGGAACTAGCCGG+AGG 0.689138 4.4:-56616544 None:intergenic
CAGCAATTGTGTTGGAACGT+GGG 0.689433 4.4:-56616890 None:intergenic
ACATAATTGAATCCACACAA+GGG 0.713140 4.4:+56616494 MS.gene046079:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATTGTTTTTTATTTC+AGG + chr4.4:56616217-56616236 MS.gene046079:intron 15.0%
!! CTATAGTATATGATGATATT+TGG + chr4.4:56616944-56616963 MS.gene046079:CDS 20.0%
!!! TTCAATTATGTCTTTTGATT+TGG - chr4.4:56616485-56616504 None:intergenic 20.0%
! AATTCACTAGATGATGAAAA+TGG - chr4.4:56616592-56616611 None:intergenic 25.0%
! ATCCATAACAAAACTTTCAT+TGG - chr4.4:56616788-56616807 None:intergenic 25.0%
! ATGATTCTTGTGAAAAATTG+TGG + chr4.4:56616169-56616188 MS.gene046079:intron 25.0%
! ATTCACTAGATGATGAAAAT+GGG - chr4.4:56616591-56616610 None:intergenic 25.0%
! GAAAAATATTCAGATTCCAA+CGG - chr4.4:56616925-56616944 None:intergenic 25.0%
! GGATTCATTTATAAAAGATG+TGG + chr4.4:56616666-56616685 MS.gene046079:CDS 25.0%
! GGTAATTGATATATAGAACA+TGG + chr4.4:56616118-56616137 MS.gene046079:intron 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG - chr4.4:56616295-56616314 None:intergenic 25.0%
!!! TTTGTTATGGATAACGATTT+TGG + chr4.4:56616796-56616815 MS.gene046079:CDS 25.0%
!!! TTTTTATTTCAGGTCTTTCA+AGG + chr4.4:56616227-56616246 MS.gene046079:intron 25.0%
ACATAATTGAATCCACACAA+GGG + chr4.4:56616494-56616513 MS.gene046079:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG + chr4.4:56616350-56616369 MS.gene046079:CDS 30.0%
ATAATGAAGTGAAGAACCAT+TGG + chr4.4:56616407-56616426 MS.gene046079:CDS 30.0%
ATATCAATTACCTGCAAACT+TGG - chr4.4:56616110-56616129 None:intergenic 30.0%
TATCAATTACCTGCAAACTT+GGG - chr4.4:56616109-56616128 None:intergenic 30.0%
TTCACTAGATGATGAAAATG+GGG - chr4.4:56616590-56616609 None:intergenic 30.0%
! AAGATGTGGATGAAAACTTT+TGG + chr4.4:56616680-56616699 MS.gene046079:CDS 30.0%
! AAGCTTTTTAGATGCTTACA+AGG + chr4.4:56616819-56616838 MS.gene046079:CDS 30.0%
!! TTGTTTTGTACTATTCCACT+TGG - chr4.4:56616727-56616746 None:intergenic 30.0%
!!! GTCCAATGAAAGTTTTGTTA+TGG + chr4.4:56616783-56616802 MS.gene046079:CDS 30.0%
AAACTTCACTCAAGAAGAAG+AGG + chr4.4:56616309-56616328 MS.gene046079:CDS 35.0%
AAAGATGTCAGCAATTGTGT+TGG - chr4.4:56616901-56616920 None:intergenic 35.0%
ACTTCATTATCTGTTCTTCC+AGG - chr4.4:56616397-56616416 None:intergenic 35.0%
ATATCACAGTTCCACTACTT+TGG + chr4.4:56616627-56616646 MS.gene046079:CDS 35.0%
ATCCGAATGCATAAAAAGCT+TGG + chr4.4:56616340-56616359 MS.gene046079:CDS 35.0%
ATCTATAGCTCTCTTCTTGA+GGG - chr4.4:56616440-56616459 None:intergenic 35.0%
CAATTACCAAATTACTCCTC+CGG + chr4.4:56616528-56616547 MS.gene046079:CDS 35.0%
CTAAGGCCTAATATCAAAAG+AGG + chr4.4:56616286-56616305 MS.gene046079:CDS 35.0%
GACATAATTGAATCCACACA+AGG + chr4.4:56616493-56616512 MS.gene046079:CDS 35.0%
GATGATGAAAATGGGGATAA+TGG - chr4.4:56616583-56616602 None:intergenic 35.0%
TATCTATAGCTCTCTTCTTG+AGG - chr4.4:56616441-56616460 None:intergenic 35.0%
TCCGAATGCATAAAAAGCTT+GGG + chr4.4:56616341-56616360 MS.gene046079:CDS 35.0%
! CCACTACTTTGGATGATTTT+GGG + chr4.4:56616638-56616657 MS.gene046079:CDS 35.0%
! TCCACTACTTTGGATGATTT+TGG + chr4.4:56616637-56616656 MS.gene046079:CDS 35.0%
! TCCCAAGCTTTTTATGCATT+CGG - chr4.4:56616345-56616364 None:intergenic 35.0%
! TTTTTGGACACAACCATATG+CGG + chr4.4:56616858-56616877 MS.gene046079:CDS 35.0%
!!! AGTCAGCAGTTGATAGTTTT+TGG + chr4.4:56616842-56616861 MS.gene046079:CDS 35.0%
!!! TTTGGATGATTTTGGGTTTC+TGG + chr4.4:56616645-56616664 MS.gene046079:CDS 35.0%
AAAGTCCAAGATCCAACTTC+AGG - chr4.4:56616145-56616164 None:intergenic 40.0%
ACTTTCATTGGACGAATGAC+CGG - chr4.4:56616776-56616795 None:intergenic 40.0%
ATAGAACATGGACCTGAAGT+TGG + chr4.4:56616130-56616149 MS.gene046079:intron 40.0%
ATCTGTTCTTCCAGGTAACT+CGG - chr4.4:56616389-56616408 None:intergenic 40.0%
ATGTCACTAGATATGGTTGC+TGG + chr4.4:56616068-56616087 MS.gene046079:CDS 40.0%
CCCAAAATCATCCAAAGTAG+TGG - chr4.4:56616641-56616660 None:intergenic 40.0%
CTAGATATGGTTGCTGGAAT+TGG + chr4.4:56616074-56616093 MS.gene046079:CDS 40.0%
GATATTTCCAACACACCAAG+TGG + chr4.4:56616709-56616728 MS.gene046079:CDS 40.0%
GGAACTGTGATATGAAGATG+TGG - chr4.4:56616620-56616639 None:intergenic 40.0%
TGAGGTGGCTGAATTATCTA+AGG + chr4.4:56616269-56616288 MS.gene046079:CDS 40.0%
! ACCATTGGTGTCTAAGATCT+GGG - chr4.4:56616560-56616579 None:intergenic 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG + chr4.4:56616232-56616251 MS.gene046079:intron 40.0%
! CGGAGGAGTAATTTGGTAAT+TGG - chr4.4:56616530-56616549 None:intergenic 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG + chr4.4:56616233-56616252 MS.gene046079:intron 40.0%
!! AAATGGGGATAATGGACCAT+TGG - chr4.4:56616575-56616594 None:intergenic 40.0%
!! TACTATTCCACTTGGTGTGT+TGG - chr4.4:56616719-56616738 None:intergenic 40.0%
!!! GATGCTTTTTTAGTGTCTCC+CGG + chr4.4:56616754-56616773 MS.gene046079:CDS 40.0%
AACTAGCCGGAGGAGTAATT+TGG - chr4.4:56616537-56616556 None:intergenic 45.0%
ATGGACCTGAAGTTGGATCT+TGG + chr4.4:56616137-56616156 MS.gene046079:intron 45.0%
ATTGCTGACATCTTTGCCGT+TGG + chr4.4:56616906-56616925 MS.gene046079:CDS 45.0%
CAGCAATTGTGTTGGAACGT+GGG - chr4.4:56616893-56616912 None:intergenic 45.0%
CTTTCATTGGACGAATGACC+GGG - chr4.4:56616775-56616794 None:intergenic 45.0%
GAATAGATGGTCGACCATTG+CGG + chr4.4:56616363-56616382 MS.gene046079:CDS 45.0%
GGAAGAGTTGTAGATTGAGG+TGG + chr4.4:56616254-56616273 MS.gene046079:CDS 45.0%
GGATATATCTCTCCCTTGTG+TGG - chr4.4:56616509-56616528 None:intergenic 45.0%
GTGGGAAGAGTTGTAGATTG+AGG + chr4.4:56616251-56616270 MS.gene046079:CDS 45.0%
TACCTGCAAACTTGGGAAGT+TGG - chr4.4:56616102-56616121 None:intergenic 45.0%
TCAGCAATTGTGTTGGAACG+TGG - chr4.4:56616894-56616913 None:intergenic 45.0%
TCCCAGATCTTAGACACCAA+TGG + chr4.4:56616556-56616575 MS.gene046079:CDS 45.0%
! GACCATTGGTGTCTAAGATC+TGG - chr4.4:56616561-56616580 None:intergenic 45.0%
! TCTAAGATCTGGGAACTAGC+CGG - chr4.4:56616550-56616569 None:intergenic 45.0%
TGGGACATGTCATCCGCATA+TGG - chr4.4:56616874-56616893 None:intergenic 50.0%
! TCTTGAGGGAAGTGTGCCAA+TGG - chr4.4:56616426-56616445 None:intergenic 50.0%
AAGATCTGGGAACTAGCCGG+AGG - chr4.4:56616547-56616566 None:intergenic 55.0%
CGCCAACTTCCCAAGTTTGC+AGG + chr4.4:56616097-56616116 MS.gene046079:intron 55.0%
ACCATTGCGGCCGAGTTACC+TGG + chr4.4:56616376-56616395 MS.gene046079:CDS 60.0%
TCCAGGTAACTCGGCCGCAA+TGG - chr4.4:56616380-56616399 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 56616068 56616972 56616068 ID=MS.gene046079
chr4.4 mRNA 56616068 56616972 56616068 ID=MS.gene046079.t1;Parent=MS.gene046079
chr4.4 exon 56616068 56616110 56616068 ID=MS.gene046079.t1.exon1;Parent=MS.gene046079.t1
chr4.4 CDS 56616068 56616110 56616068 ID=cds.MS.gene046079.t1;Parent=MS.gene046079.t1
chr4.4 exon 56616239 56616972 56616239 ID=MS.gene046079.t1.exon2;Parent=MS.gene046079.t1
chr4.4 CDS 56616239 56616972 56616239 ID=cds.MS.gene046079.t1;Parent=MS.gene046079.t1
Gene Sequence

>MS.gene046079

ATGTCACTAGATATGGTTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTAATTGATATATAGAACATGGACCTGAAGTTGGATCTTGGACTTTGATGATGATTCTTGTGAAAAATTGTGGTCAAATAACATAAAATTTACTCACTATTTCATTGTTTTTTATTTCAGGTCTTTCAAGGTGTGGGAAGAGTTGTAGATTGAGGTGGCTGAATTATCTAAGGCCTAATATCAAAAGAGGAAACTTCACTCAAGAAGAAGAGGAGTTGATTATCCGAATGCATAAAAAGCTTGGGAATAGATGGTCGACCATTGCGGCCGAGTTACCTGGAAGAACAGATAATGAAGTGAAGAACCATTGGCACACTTCCCTCAAGAAGAGAGCTATAGATAACATAGTCACAAATGAAGAAACCAAATCAAAAGACATAATTGAATCCACACAAGGGAGAGATATATCCAATTACCAAATTACTCCTCCGGCTAGTTCCCAGATCTTAGACACCAATGGTCCATTATCCCCATTTTCATCATCTAGTGAATTCTCTTCCACATCTTCATATCACAGTTCCACTACTTTGGATGATTTTGGGTTTCTGGATTCATTTATAAAAGATGTGGATGAAAACTTTTGGCTTAATGATATTTCCAACACACCAAGTGGAATAGTACAAAACAATACTAATGATGCTTTTTTAGTGTCTCCCGGTCATTCGTCCAATGAAAGTTTTGTTATGGATAACGATTTTGGAAGCTTTTTAGATGCTTACAAGGAGTCAGCAGTTGATAGTTTTTGGACACAACCATATGCGGATGACATGTCCCACGTTCCAACACAATTGCTGACATCTTTGCCGTTGGAATCTGAATATTTTTCTATAGTATATGATGATATTTGGAGTTGA
Protein sequence

>MS.gene046079.t1

MSLDMVAGIGANFPSLSRCGKSCRLRWLNYLRPNIKRGNFTQEEEELIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRAIDNIVTNEETKSKDIIESTQGRDISNYQITPPASSQILDTNGPLSPFSSSSEFSSTSSYHSSTTLDDFGFLDSFIKDVDENFWLNDISNTPSGIVQNNTNDAFLVSPGHSSNESFVMDNDFGSFLDAYKESAVDSFWTQPYADDMSHVPTQLLTSLPLESEYFSIVYDDIWS