AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04610.t1 MTR_7g093000 95.652 575 21 1 1 575 1 571 0.0 1122
MS.gene04610.t1 MTR_5g084810 34.938 561 350 5 13 567 28 579 2.95e-108 337
MS.gene04610.t1 MTR_8g005155 25.045 555 372 13 33 565 22 554 4.01e-45 168
MS.gene04610.t1 MTR_7g080620 24.689 563 381 14 27 565 31 574 1.04e-42 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04610.t1 AT5G06811 45.276 561 288 8 20 568 23 576 5.24e-159 467
MS.gene04610.t1 AT5G06810 40.702 570 305 8 20 568 23 580 4.23e-145 431
MS.gene04610.t1 AT4G19650 38.624 567 331 7 3 568 39 589 5.54e-134 403
MS.gene04610.t1 AT4G19650 39.879 494 285 5 76 568 90 572 1.43e-122 373
MS.gene04610.t1 AT5G45113 33.647 425 263 5 149 568 1 411 2.20e-78 253
MS.gene04610.t1 AT3G60400 25.673 557 377 11 26 565 10 546 2.45e-55 196

Find 110 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATGAGGTTTCTTGTAAT+TGG 0.139207 7.3:+17593093 MS.gene04610:CDS
AGAAATGGATTGGGCGTTTA+AGG 0.166970 7.3:+17593646 MS.gene04610:CDS
CTTAACTCTTGGAGATTTAT+AGG 0.169215 7.3:-17593873 None:intergenic
AAGGGTTCAAATTCGTTAAT+AGG 0.178407 7.3:-17592687 None:intergenic
TGCAGCTTGGGCTTCTTTAA+TGG 0.216279 7.3:-17592502 None:intergenic
ATCCGTCTGGCCTTCAAGTT+TGG 0.231486 7.3:+17594014 MS.gene04610:CDS
CAAACCCAAACTCTCGAAAA+AGG 0.236170 7.3:-17592706 None:intergenic
GGATGAGGTTTCTTGTAATT+GGG 0.245427 7.3:+17593094 MS.gene04610:CDS
TGGTGTTCCTCGATCCAAAA+TGG 0.255150 7.3:+17592824 MS.gene04610:CDS
TAAATTTGAAAATGGGGTTT+TGG 0.276379 7.3:+17592878 MS.gene04610:CDS
GATTAAGGCTTATGAAGATT+TGG 0.277999 7.3:+17592908 MS.gene04610:CDS
GAAATGAAGAACTGGGTTCT+TGG 0.309862 7.3:+17593518 MS.gene04610:CDS
ATTAAGGCTTATGAAGATTT+GGG 0.321396 7.3:+17592909 MS.gene04610:CDS
AGGTAAGGGAGCTGAGCTTC+AGG 0.325160 7.3:+17593676 MS.gene04610:CDS
TTAAGCCTATGGTTGGCTTA+AGG 0.351833 7.3:+17593549 MS.gene04610:CDS
ATCCTCTTGAAATGAAGAAC+TGG 0.352452 7.3:+17593510 MS.gene04610:CDS
TTAGGTTGTCAATGTATAAC+TGG 0.352925 7.3:+17593897 MS.gene04610:CDS
TAAGCCTATGGTTGGCTTAA+GGG 0.353016 7.3:+17593550 MS.gene04610:CDS
GTTTAGAGAGGGTTTAAGAT+TGG 0.359706 7.3:-17592409 None:intergenic
TCCGTCTGGCCTTCAAGTTT+GGG 0.365084 7.3:+17594015 MS.gene04610:CDS
ATTATCTGTGCATGCGATAA+TGG 0.370221 7.3:-17593963 None:intergenic
AGGGTTCAAATTCGTTAATA+GGG 0.372587 7.3:-17592686 None:intergenic
GCAACTCTTCCCAAACTTGA+AGG 0.394707 7.3:-17594024 None:intergenic
TACCACAGTCTGTGTAACTA+TGG 0.396798 7.3:+17592804 MS.gene04610:CDS
GGCAAGACACTCTCGATGAT+TGG 0.410057 7.3:+17593224 MS.gene04610:CDS
ATATTCTAACAATGCAGCTT+GGG 0.419910 7.3:-17592514 None:intergenic
ATTGAGTATCTTGTAAAGAA+AGG 0.421238 7.3:+17593809 MS.gene04610:CDS
GACCACGGGGCTGTGAATCC+CGG 0.428840 7.3:+17593926 MS.gene04610:CDS
GGTGTTCCTCGATCCAAAAT+GGG 0.437198 7.3:+17592825 MS.gene04610:CDS
TTCTTAATCAGAACACAGAT+AGG 0.440115 7.3:+17593774 MS.gene04610:CDS
CAGTCTCACACAGTACTTGC+GGG 0.440618 7.3:+17593404 MS.gene04610:CDS
TTCGCTGTGTTGTAAAATCT+AGG 0.443690 7.3:-17592432 None:intergenic
TATGGTTGGCTTAAGGGATC+TGG 0.446200 7.3:+17593556 MS.gene04610:CDS
GATGAGGTTTCTTGTAATTG+GGG 0.448648 7.3:+17593095 MS.gene04610:CDS
TGTGGAAAACACGAAAGAAA+TGG 0.448745 7.3:+17593631 MS.gene04610:CDS
CTTGTTGCGCTTAGGTTATG+TGG 0.449939 7.3:+17593613 MS.gene04610:CDS
TTGTGCTTGCTTTCGAATGT+TGG 0.450865 7.3:+17593134 MS.gene04610:CDS
GTTTAAGGCGTTCAGAGGTA+AGG 0.457273 7.3:+17593661 MS.gene04610:CDS
GAGATGGAAGCTAAAGAGAT+TGG 0.461660 7.3:+17593371 MS.gene04610:CDS
TGTTAATGTTGAATTTGTTA+AGG 0.462584 7.3:+17592992 MS.gene04610:CDS
CCGCAAGTACTGTGTGAGAC+TGG 0.465962 7.3:-17593403 None:intergenic
GTTGCTTGAATGTAGGTAAG+AGG 0.469865 7.3:+17593462 MS.gene04610:CDS
TCGCTGTGTTGTAAAATCTA+GGG 0.474371 7.3:-17592431 None:intergenic
CGAGAAACAAGAGGGCAATC+TGG 0.474907 7.3:-17593277 None:intergenic
AAGACAACTAAGAGTTTGCT+TGG 0.477982 7.3:+17593440 MS.gene04610:CDS
TATGTAAAACGCCATCCGTC+TGG 0.479613 7.3:+17594001 MS.gene04610:CDS
GACAACCTAAGCTTAACTCT+TGG 0.480332 7.3:-17593884 None:intergenic
AATCTCCAAGAGTTAAGCTT+AGG 0.484339 7.3:+17593879 MS.gene04610:CDS
GTAAAATCTAGGGTTTAGAG+AGG 0.484384 7.3:-17592421 None:intergenic
AAAACACGAAAGAAATGGAT+TGG 0.486098 7.3:+17593636 MS.gene04610:CDS
GATATTCTAACAATGCAGCT+TGG 0.491273 7.3:-17592515 None:intergenic
TTGCTTGGTTGCTTGAATGT+AGG 0.497867 7.3:+17593455 MS.gene04610:CDS
ACAGAGTTCTTGTTGCGCTT+AGG 0.497883 7.3:+17593605 MS.gene04610:CDS
TTGATAGTGGTTGGATTCAG+TGG 0.501005 7.3:+17593063 MS.gene04610:CDS
ACCACGGGGCTGTGAATCCC+GGG 0.505110 7.3:+17593927 MS.gene04610:CDS
TGGAATAAGAGTTAAGCCTA+TGG 0.513478 7.3:+17593538 MS.gene04610:CDS
ACCCAGTTCTTCATTTCAAG+AGG 0.514113 7.3:-17593512 None:intergenic
TTGAAGAATATTGTTGCAAA+GGG 0.516097 7.3:+17593026 MS.gene04610:CDS
GATTTATAGGAAAGATATGA+TGG 0.516794 7.3:-17593860 None:intergenic
TGGTAATTCGCCATCAAAAG+AGG 0.520777 7.3:-17592786 None:intergenic
GCTTCTGACTGAAATTGAGA+TGG 0.523682 7.3:+17593355 MS.gene04610:CDS
ACATCACCAACCACAATCCC+TGG 0.524076 7.3:-17592972 None:intergenic
AATGGTGCTCAAAGCAAGCC+CGG 0.524340 7.3:-17593945 None:intergenic
ATTGTTGCAAAGGGTGGTGA+TGG 0.524388 7.3:+17593035 MS.gene04610:CDS
AGAAATCGATTAACACGAAA+CGG 0.527963 7.3:+17592637 MS.gene04610:CDS
TGGCTTAAGGGATCTGGAAG+AGG 0.530600 7.3:+17593562 MS.gene04610:CDS
AAACACGAAAGAAATGGATT+GGG 0.533185 7.3:+17593637 MS.gene04610:CDS
GAAGAGGAGAAATCGAGGGT+GGG 0.535364 7.3:+17593578 MS.gene04610:CDS
ACTGCAAGCTTCTTGTGGAA+TGG 0.539414 7.3:-17592539 None:intergenic
TGCTGTAAGTCCAGGGATTG+TGG 0.540265 7.3:+17592962 MS.gene04610:CDS
CGAGTTTCCACAGATTTCGA+TGG 0.543091 7.3:+17593298 MS.gene04610:CDS
CAGTTGGCTGAGATTATTCG+TGG 0.547737 7.3:+17593170 MS.gene04610:CDS
ATAAGAGTTAAGCCTATGGT+TGG 0.547914 7.3:+17593542 MS.gene04610:CDS
AGCAAAGATTCATATTCAGA+AGG 0.550210 7.3:-17592732 None:intergenic
AGATCCCTTAAGCCAACCAT+AGG 0.552682 7.3:-17593554 None:intergenic
AAGAATATTGTTGCAAAGGG+TGG 0.552691 7.3:+17593029 MS.gene04610:CDS
GCGTCTATGTAGCATACTGC+AGG 0.554692 7.3:+17593484 MS.gene04610:CDS
AAGAGGAGAAATCGAGGGTG+GGG 0.556838 7.3:+17593579 MS.gene04610:CDS
CGTTAATAGGGTTGTAACGA+AGG 0.566099 7.3:-17592674 None:intergenic
GTTGAAGAATATTGTTGCAA+AGG 0.570077 7.3:+17593025 MS.gene04610:CDS
AATGCTGTTGCTGTAAGTCC+AGG 0.570515 7.3:+17592954 MS.gene04610:CDS
CCAGTCTCACACAGTACTTG+CGG 0.570636 7.3:+17593403 MS.gene04610:CDS
TTTAAGGCGTTCAGAGGTAA+GGG 0.573608 7.3:+17593662 MS.gene04610:CDS
GGAAGAGGAGAAATCGAGGG+TGG 0.579631 7.3:+17593577 MS.gene04610:CDS
ATAACTGGCTCGTAGACCAC+GGG 0.581712 7.3:+17593912 MS.gene04610:CDS
TCCCAAACTTGAAGGCCAGA+CGG 0.582508 7.3:-17594016 None:intergenic
CTGAAGACACACCCTCAAGT+TGG 0.586419 7.3:-17593333 None:intergenic
ATCTGGAAGAGGAGAAATCG+AGG 0.593033 7.3:+17593573 MS.gene04610:CDS
TCCTCTTGAAATGAAGAACT+GGG 0.593818 7.3:+17593511 MS.gene04610:CDS
TGGGCGTTTAAGGCGTTCAG+AGG 0.599598 7.3:+17593656 MS.gene04610:CDS
AAACTTGAAGGCCAGACGGA+TGG 0.607382 7.3:-17594012 None:intergenic
TCTTAATCAGAACACAGATA+GGG 0.611252 7.3:+17593775 MS.gene04610:CDS
TAAAATCTAGGGTTTAGAGA+GGG 0.617900 7.3:-17592420 None:intergenic
GTAAGTCCAGGGATTGTGGT+TGG 0.623479 7.3:+17592966 MS.gene04610:CDS
TATAACTGGCTCGTAGACCA+CGG 0.623871 7.3:+17593911 MS.gene04610:CDS
ATGGTGCTCAAAGCAAGCCC+GGG 0.635036 7.3:-17593944 None:intergenic
GTGTTCTGATTAAGAATCTG+AGG 0.641643 7.3:-17593767 None:intergenic
GTGGAAACTCGAGAAACAAG+AGG 0.644988 7.3:-17593286 None:intergenic
TGGTTTCAGTGAGAAACAGT+TGG 0.649810 7.3:+17593154 MS.gene04610:CDS
TGGAAACTCGAGAAACAAGA+GGG 0.652528 7.3:-17593285 None:intergenic
TAATAGGGTTGTAACGAAGG+TGG 0.654329 7.3:-17592671 None:intergenic
GTGTTCCTCGATCCAAAATG+GGG 0.658605 7.3:+17592826 MS.gene04610:CDS
CACCATAGTTACACAGACTG+TGG 0.658934 7.3:-17592806 None:intergenic
TCAAAAGAGGATCATCGTTG+AGG 0.659008 7.3:-17592773 None:intergenic
TTGAGGAAAATCAAATCACG+TGG 0.663073 7.3:-17592756 None:intergenic
GCCCGGGATTCACAGCCCCG+TGG 0.676521 7.3:-17593928 None:intergenic
ATGCTGTTGCTGTAAGTCCA+GGG 0.682252 7.3:+17592955 MS.gene04610:CDS
AACTTGACCATCGAAATCTG+TGG 0.684694 7.3:-17593305 None:intergenic
TCTGGAAGAGGAGAAATCGA+GGG 0.689277 7.3:+17593574 MS.gene04610:CDS
TAACTGGCTCGTAGACCACG+GGG 0.784650 7.3:+17593913 MS.gene04610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTTAAATTTGAAAAT+GGG + chr7.3:17592871-17592890 MS.gene04610:CDS 10.0%
!!! AGTTTTTAAATTTGAAAATG+GGG + chr7.3:17592872-17592891 MS.gene04610:CDS 15.0%
!!! CAAGTTTTTAAATTTGAAAA+TGG + chr7.3:17592870-17592889 MS.gene04610:CDS 15.0%
!!! TTTGATTTTATTGTTAATAC+TGG + chr7.3:17593704-17593723 MS.gene04610:CDS 15.0%
!!! TTTTCAAATTTAAAAACTTG+CGG - chr7.3:17592870-17592889 None:intergenic 15.0%
!! GATTCTTCAAAAATAATACA+AGG - chr7.3:17593200-17593219 None:intergenic 20.0%
!!! GTTTTGAAACTAATTGAATT+GGG - chr7.3:17592461-17592480 None:intergenic 20.0%
!!! TGTATTATTTTTGAAGAATC+AGG + chr7.3:17593200-17593219 MS.gene04610:CDS 20.0%
!!! TGTTAATGTTGAATTTGTTA+AGG + chr7.3:17592992-17593011 MS.gene04610:CDS 20.0%
! ATTAAGGCTTATGAAGATTT+GGG + chr7.3:17592909-17592928 MS.gene04610:CDS 25.0%
! ATTGAGTATCTTGTAAAGAA+AGG + chr7.3:17593809-17593828 MS.gene04610:CDS 25.0%
! GATTTATAGGAAAGATATGA+TGG - chr7.3:17593863-17593882 None:intergenic 25.0%
! TTGAAGAATATTGTTGCAAA+GGG + chr7.3:17593026-17593045 MS.gene04610:CDS 25.0%
!! ATGTTAATCTCAGTTTTCTA+AGG - chr7.3:17592359-17592378 None:intergenic 25.0%
!! TAAATTTGAAAATGGGGTTT+TGG + chr7.3:17592878-17592897 MS.gene04610:CDS 25.0%
!! TTTGAAAATTTTCCCCATTT+TGG - chr7.3:17592841-17592860 None:intergenic 25.0%
!!! AATCGATTTCTCGTTTTTTA+GGG - chr7.3:17592628-17592647 None:intergenic 25.0%
!!! ATTATTTTTGAAGAATCAGG+AGG + chr7.3:17593203-17593222 MS.gene04610:CDS 25.0%
!!! ATTGGTTTTTTGGTCAAATT+TGG + chr7.3:17593242-17593261 MS.gene04610:CDS 25.0%
!!! GGTTTTGAAACTAATTGAAT+TGG - chr7.3:17592462-17592481 None:intergenic 25.0%
!!! GTTGATTTTGAGAGAATTTT+AGG - chr7.3:17592483-17592502 None:intergenic 25.0%
!!! TAATCGATTTCTCGTTTTTT+AGG - chr7.3:17592629-17592648 None:intergenic 25.0%
!!! TTTAAGATTGGTGTGATTTT+TGG - chr7.3:17592400-17592419 None:intergenic 25.0%
AAAACACGAAAGAAATGGAT+TGG + chr7.3:17593636-17593655 MS.gene04610:CDS 30.0%
AAGGGTTCAAATTCGTTAAT+AGG - chr7.3:17592690-17592709 None:intergenic 30.0%
AGAAATCGATTAACACGAAA+CGG + chr7.3:17592637-17592656 MS.gene04610:CDS 30.0%
AGCAAAGATTCATATTCAGA+AGG - chr7.3:17592735-17592754 None:intergenic 30.0%
AGGGTTCAAATTCGTTAATA+GGG - chr7.3:17592689-17592708 None:intergenic 30.0%
ATATTCTAACAATGCAGCTT+GGG - chr7.3:17592517-17592536 None:intergenic 30.0%
CTTAACTCTTGGAGATTTAT+AGG - chr7.3:17593876-17593895 None:intergenic 30.0%
GATTAAGGCTTATGAAGATT+TGG + chr7.3:17592908-17592927 MS.gene04610:CDS 30.0%
GTTGAAGAATATTGTTGCAA+AGG + chr7.3:17593025-17593044 MS.gene04610:CDS 30.0%
TCTTAATCAGAACACAGATA+GGG + chr7.3:17593775-17593794 MS.gene04610:CDS 30.0%
TTCTTAATCAGAACACAGAT+AGG + chr7.3:17593774-17593793 MS.gene04610:CDS 30.0%
! AAACACGAAAGAAATGGATT+GGG + chr7.3:17593637-17593656 MS.gene04610:CDS 30.0%
! TAAAATCTAGGGTTTAGAGA+GGG - chr7.3:17592423-17592442 None:intergenic 30.0%
! TTAGGTTGTCAATGTATAAC+TGG + chr7.3:17593897-17593916 MS.gene04610:CDS 30.0%
!! ACGAGATTTTGAAGGAAAAA+AGG - chr7.3:17592597-17592616 None:intergenic 30.0%
AAACCCAAACTCTCGAAAAA+GGG - chr7.3:17592708-17592727 None:intergenic 35.0%
AAGAATATTGTTGCAAAGGG+TGG + chr7.3:17593029-17593048 MS.gene04610:CDS 35.0%
AATCTCCAAGAGTTAAGCTT+AGG + chr7.3:17593879-17593898 MS.gene04610:CDS 35.0%
ATAAGAGTTAAGCCTATGGT+TGG + chr7.3:17593542-17593561 MS.gene04610:CDS 35.0%
ATCCTCTTGAAATGAAGAAC+TGG + chr7.3:17593510-17593529 MS.gene04610:CDS 35.0%
ATTATCTGTGCATGCGATAA+TGG - chr7.3:17593966-17593985 None:intergenic 35.0%
GATATTCTAACAATGCAGCT+TGG - chr7.3:17592518-17592537 None:intergenic 35.0%
GATGAGGTTTCTTGTAATTG+GGG + chr7.3:17593095-17593114 MS.gene04610:CDS 35.0%
GGATGAGGTTTCTTGTAATT+GGG + chr7.3:17593094-17593113 MS.gene04610:CDS 35.0%
GTGTTCTGATTAAGAATCTG+AGG - chr7.3:17593770-17593789 None:intergenic 35.0%
TAAAAACTGCAAGCTTCTTG+TGG - chr7.3:17592547-17592566 None:intergenic 35.0%
TCCTCTTGAAATGAAGAACT+GGG + chr7.3:17593511-17593530 MS.gene04610:CDS 35.0%
TCGCTGTGTTGTAAAATCTA+GGG - chr7.3:17592434-17592453 None:intergenic 35.0%
TGGAATAAGAGTTAAGCCTA+TGG + chr7.3:17593538-17593557 MS.gene04610:CDS 35.0%
TGGATGAGGTTTCTTGTAAT+TGG + chr7.3:17593093-17593112 MS.gene04610:CDS 35.0%
TGTGGAAAACACGAAAGAAA+TGG + chr7.3:17593631-17593650 MS.gene04610:CDS 35.0%
TTCGCTGTGTTGTAAAATCT+AGG - chr7.3:17592435-17592454 None:intergenic 35.0%
TTGAGGAAAATCAAATCACG+TGG - chr7.3:17592759-17592778 None:intergenic 35.0%
! AAGACAACTAAGAGTTTGCT+TGG + chr7.3:17593440-17593459 MS.gene04610:CDS 35.0%
! GTAAAATCTAGGGTTTAGAG+AGG - chr7.3:17592424-17592443 None:intergenic 35.0%
! GTTTAGAGAGGGTTTAAGAT+TGG - chr7.3:17592412-17592431 None:intergenic 35.0%
! TTTTGTGGACGAGATTTTGA+AGG - chr7.3:17592605-17592624 None:intergenic 35.0%
!!! ACTCTCGATGATTGGTTTTT+TGG + chr7.3:17593232-17593251 MS.gene04610:CDS 35.0%
!!! ATGGTGATTTTGATAGTGGT+TGG + chr7.3:17593054-17593073 MS.gene04610:CDS 35.0%
!!! CAAGTTTTTTGCCAACTTGA+GGG + chr7.3:17593322-17593341 MS.gene04610:CDS 35.0%
!!! GGTTTTGGTTTCGAAGATTA+AGG + chr7.3:17592893-17592912 MS.gene04610:CDS 35.0%
!!! TCAAGTTTTTTGCCAACTTG+AGG + chr7.3:17593321-17593340 MS.gene04610:CDS 35.0%
!!! TCTCGTTTTTTAGGGTTTTG+TGG - chr7.3:17592620-17592639 None:intergenic 35.0%
!!! TTGGATTCAGTGGCATTTTT+TGG + chr7.3:17593073-17593092 MS.gene04610:CDS 35.0%
AACTTGACCATCGAAATCTG+TGG - chr7.3:17593308-17593327 None:intergenic 40.0%
ACCCAGTTCTTCATTTCAAG+AGG - chr7.3:17593515-17593534 None:intergenic 40.0%
CAAACCCAAACTCTCGAAAA+AGG - chr7.3:17592709-17592728 None:intergenic 40.0%
CGTTAATAGGGTTGTAACGA+AGG - chr7.3:17592677-17592696 None:intergenic 40.0%
GAAATGAAGAACTGGGTTCT+TGG + chr7.3:17593518-17593537 MS.gene04610:CDS 40.0%
GACAACCTAAGCTTAACTCT+TGG - chr7.3:17593887-17593906 None:intergenic 40.0%
GAGATGGAAGCTAAAGAGAT+TGG + chr7.3:17593371-17593390 MS.gene04610:CDS 40.0%
GCTTCTGACTGAAATTGAGA+TGG + chr7.3:17593355-17593374 MS.gene04610:CDS 40.0%
GTTGCTTGAATGTAGGTAAG+AGG + chr7.3:17593462-17593481 MS.gene04610:CDS 40.0%
TAATAGGGTTGTAACGAAGG+TGG - chr7.3:17592674-17592693 None:intergenic 40.0%
TACCACAGTCTGTGTAACTA+TGG + chr7.3:17592804-17592823 MS.gene04610:CDS 40.0%
TCAAAAGAGGATCATCGTTG+AGG - chr7.3:17592776-17592795 None:intergenic 40.0%
TGGAAACTCGAGAAACAAGA+GGG - chr7.3:17593288-17593307 None:intergenic 40.0%
TGGTAATTCGCCATCAAAAG+AGG - chr7.3:17592789-17592808 None:intergenic 40.0%
TGGTTTCAGTGAGAAACAGT+TGG + chr7.3:17593154-17593173 MS.gene04610:CDS 40.0%
TTGCTTGGTTGCTTGAATGT+AGG + chr7.3:17593455-17593474 MS.gene04610:CDS 40.0%
TTGTGCTTGCTTTCGAATGT+TGG + chr7.3:17593134-17593153 MS.gene04610:CDS 40.0%
! ATTTTCCCCATTTTGGATCG+AGG - chr7.3:17592834-17592853 None:intergenic 40.0%
! CAACGATGATCCTCTTTTGA+TGG + chr7.3:17592776-17592795 MS.gene04610:CDS 40.0%
! TTTAAGGCGTTCAGAGGTAA+GGG + chr7.3:17593662-17593681 MS.gene04610:CDS 40.0%
!! AGAAATGGATTGGGCGTTTA+AGG + chr7.3:17593646-17593665 MS.gene04610:CDS 40.0%
!! GGTGATGGTGATTTTGATAG+TGG + chr7.3:17593050-17593069 MS.gene04610:CDS 40.0%
!! TAAGCCTATGGTTGGCTTAA+GGG + chr7.3:17593550-17593569 MS.gene04610:CDS 40.0%
!! TTAAGCCTATGGTTGGCTTA+AGG + chr7.3:17593549-17593568 MS.gene04610:CDS 40.0%
!! TTGATAGTGGTTGGATTCAG+TGG + chr7.3:17593063-17593082 MS.gene04610:CDS 40.0%
!!! GAACCCTTTTTCGAGAGTTT+GGG + chr7.3:17592702-17592721 MS.gene04610:CDS 40.0%
!!! TCAGTGGCATTTTTTGGATG+AGG + chr7.3:17593079-17593098 MS.gene04610:CDS 40.0%
!!! TGAACCCTTTTTCGAGAGTT+TGG + chr7.3:17592701-17592720 MS.gene04610:CDS 40.0%
AATGCTGTTGCTGTAAGTCC+AGG + chr7.3:17592954-17592973 MS.gene04610:CDS 45.0%
ACAGAGTTCTTGTTGCGCTT+AGG + chr7.3:17593605-17593624 MS.gene04610:CDS 45.0%
ACTGCAAGCTTCTTGTGGAA+TGG - chr7.3:17592542-17592561 None:intergenic 45.0%
AGATCCCTTAAGCCAACCAT+AGG - chr7.3:17593557-17593576 None:intergenic 45.0%
ATCTGGAAGAGGAGAAATCG+AGG + chr7.3:17593573-17593592 MS.gene04610:CDS 45.0%
ATGCTGTTGCTGTAAGTCCA+GGG + chr7.3:17592955-17592974 MS.gene04610:CDS 45.0%
ATTGTTGCAAAGGGTGGTGA+TGG + chr7.3:17593035-17593054 MS.gene04610:CDS 45.0%
CACCATAGTTACACAGACTG+TGG - chr7.3:17592809-17592828 None:intergenic 45.0%
CAGTTGGCTGAGATTATTCG+TGG + chr7.3:17593170-17593189 MS.gene04610:CDS 45.0%
CGAGTTTCCACAGATTTCGA+TGG + chr7.3:17593298-17593317 MS.gene04610:CDS 45.0%
CTTGTTGCGCTTAGGTTATG+TGG + chr7.3:17593613-17593632 MS.gene04610:CDS 45.0%
GCAACTCTTCCCAAACTTGA+AGG - chr7.3:17594027-17594046 None:intergenic 45.0%
GGTGTTCCTCGATCCAAAAT+GGG + chr7.3:17592825-17592844 MS.gene04610:CDS 45.0%
GTGGAAACTCGAGAAACAAG+AGG - chr7.3:17593289-17593308 None:intergenic 45.0%
GTGTTCCTCGATCCAAAATG+GGG + chr7.3:17592826-17592845 MS.gene04610:CDS 45.0%
TATGTAAAACGCCATCCGTC+TGG + chr7.3:17594001-17594020 MS.gene04610:CDS 45.0%
TCTGGAAGAGGAGAAATCGA+GGG + chr7.3:17593574-17593593 MS.gene04610:CDS 45.0%
TGCAGCTTGGGCTTCTTTAA+TGG - chr7.3:17592505-17592524 None:intergenic 45.0%
TGGTGTTCCTCGATCCAAAA+TGG + chr7.3:17592824-17592843 MS.gene04610:CDS 45.0%
! GTTTAAGGCGTTCAGAGGTA+AGG + chr7.3:17593661-17593680 MS.gene04610:CDS 45.0%
!! TATAACTGGCTCGTAGACCA+CGG + chr7.3:17593911-17593930 MS.gene04610:CDS 45.0%
!! TATGGTTGGCTTAAGGGATC+TGG + chr7.3:17593556-17593575 MS.gene04610:CDS 45.0%
AAACTTGAAGGCCAGACGGA+TGG - chr7.3:17594015-17594034 None:intergenic 50.0%
AAGAGGAGAAATCGAGGGTG+GGG + chr7.3:17593579-17593598 MS.gene04610:CDS 50.0%
AATGGTGCTCAAAGCAAGCC+CGG - chr7.3:17593948-17593967 None:intergenic 50.0%
ACATCACCAACCACAATCCC+TGG - chr7.3:17592975-17592994 None:intergenic 50.0%
CAGTCTCACACAGTACTTGC+GGG + chr7.3:17593404-17593423 MS.gene04610:CDS 50.0%
CCAGTCTCACACAGTACTTG+CGG + chr7.3:17593403-17593422 MS.gene04610:CDS 50.0%
CGAGAAACAAGAGGGCAATC+TGG - chr7.3:17593280-17593299 None:intergenic 50.0%
CTGAAGACACACCCTCAAGT+TGG - chr7.3:17593336-17593355 None:intergenic 50.0%
GAAGAGGAGAAATCGAGGGT+GGG + chr7.3:17593578-17593597 MS.gene04610:CDS 50.0%
GCGTCTATGTAGCATACTGC+AGG + chr7.3:17593484-17593503 MS.gene04610:CDS 50.0%
GGCAAGACACTCTCGATGAT+TGG + chr7.3:17593224-17593243 MS.gene04610:CDS 50.0%
GTAAGTCCAGGGATTGTGGT+TGG + chr7.3:17592966-17592985 MS.gene04610:CDS 50.0%
TCCCAAACTTGAAGGCCAGA+CGG - chr7.3:17594019-17594038 None:intergenic 50.0%
TGCTGTAAGTCCAGGGATTG+TGG + chr7.3:17592962-17592981 MS.gene04610:CDS 50.0%
TGGCTTAAGGGATCTGGAAG+AGG + chr7.3:17593562-17593581 MS.gene04610:CDS 50.0%
! ATCCGTCTGGCCTTCAAGTT+TGG + chr7.3:17594014-17594033 MS.gene04610:CDS 50.0%
! TCCGTCTGGCCTTCAAGTTT+GGG + chr7.3:17594015-17594034 MS.gene04610:CDS 50.0%
!! ATAACTGGCTCGTAGACCAC+GGG + chr7.3:17593912-17593931 MS.gene04610:CDS 50.0%
AGGTAAGGGAGCTGAGCTTC+AGG + chr7.3:17593676-17593695 MS.gene04610:CDS 55.0%
ATGGTGCTCAAAGCAAGCCC+GGG - chr7.3:17593947-17593966 None:intergenic 55.0%
GGAAGAGGAGAAATCGAGGG+TGG + chr7.3:17593577-17593596 MS.gene04610:CDS 55.0%
! CCGCAAGTACTGTGTGAGAC+TGG - chr7.3:17593406-17593425 None:intergenic 55.0%
! TGGGCGTTTAAGGCGTTCAG+AGG + chr7.3:17593656-17593675 MS.gene04610:CDS 55.0%
!! TAACTGGCTCGTAGACCACG+GGG + chr7.3:17593913-17593932 MS.gene04610:CDS 55.0%
ACCACGGGGCTGTGAATCCC+GGG + chr7.3:17593927-17593946 MS.gene04610:CDS 65.0%
GACCACGGGGCTGTGAATCC+CGG + chr7.3:17593926-17593945 MS.gene04610:CDS 65.0%
GCCCGGGATTCACAGCCCCG+TGG - chr7.3:17593931-17593950 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 17592348 17594075 17592348 ID=MS.gene04610
chr7.3 mRNA 17592348 17594075 17592348 ID=MS.gene04610.t1;Parent=MS.gene04610
chr7.3 exon 17592348 17594075 17592348 ID=MS.gene04610.t1.exon1;Parent=MS.gene04610.t1
chr7.3 CDS 17592348 17594075 17592348 ID=cds.MS.gene04610.t1;Parent=MS.gene04610.t1
Gene Sequence

>MS.gene04610

ATGATCGACCTTAGAAAACTGAGATTAACATTCACATTTTTCAATCTCACCAAAAATCACACCAATCTTAAACCCTCTCTAAACCCTAGATTTTACAACACAGCGAAAAACCCAATTCAATTAGTTTCAAAACCTAAAATTCTCTCAAAATCAACCATTAAAGAAGCCCAAGCTGCATTGTTAGAATATCTCCATTCCACAAGAAGCTTGCAGTTTTTAGATGCAGATAACATGTGCAAAAACTCGCCTTTTTTCCTTCAAAATCTCGTCCACAAAACCCTAAAAAACGAGAAATCGATTAACACGAAACGGTTAATATCTCGCCACCTTCGTTACAACCCTATTAACGAATTTGAACCCTTTTTCGAGAGTTTGGGTTTGAAGCCTTCTGAATATGAATCTTTGCTTCCACGTGATTTGATTTTCCTCAACGATGATCCTCTTTTGATGGCGAATTACCACAGTCTGTGTAACTATGGTGTTCCTCGATCCAAAATGGGGAAAATTTTCAAACAAACGCCGCAAGTTTTTAAATTTGAAAATGGGGTTTTGGTTTCGAAGATTAAGGCTTATGAAGATTTGGGTATTTCGACTTCGATTTTAGTGAATGCTGTTGCTGTAAGTCCAGGGATTGTGGTTGGTGATGTTAATGTTGAATTTGTTAAGGTTGTTGAGATGTTGAAGAATATTGTTGCAAAGGGTGGTGATGGTGATTTTGATAGTGGTTGGATTCAGTGGCATTTTTTGGATGAGGTTTCTTGTAATTGGGGTTTAATGCTTGAGCTATTGTGCTTGCTTTCGAATGTTGGTTTCAGTGAGAAACAGTTGGCTGAGATTATTCGTGGTAGTCCTTGTATTATTTTTGAAGAATCAGGAGGCAAGACACTCTCGATGATTGGTTTTTTGGTCAAATTTGGATTGTCTGTGAACCAGATTGCCCTCTTGTTTCTCGAGTTTCCACAGATTTCGATGGTCAAGTTTTTTGCCAACTTGAGGGTGTGTCTTCAGCTTCTGACTGAAATTGAGATGGAAGCTAAAGAGATTGGAAAGATTTTCCAGTCTCACACAGTACTTGCGGGTTCAAATACTCTAAAGACAACTAAGAGTTTGCTTGGTTGCTTGAATGTAGGTAAGAGGCGTCTATGTAGCATACTGCAGGATAATCCTCTTGAAATGAAGAACTGGGTTCTTGGAATAAGAGTTAAGCCTATGGTTGGCTTAAGGGATCTGGAAGAGGAGAAATCGAGGGTGGGGAAGACAGAGTTCTTGTTGCGCTTAGGTTATGTGGAAAACACGAAAGAAATGGATTGGGCGTTTAAGGCGTTCAGAGGTAAGGGAGCTGAGCTTCAGGAGAGATTTGATTTTATTGTTAATACTGGATTGACACGTGATGAAGTTCGTAGAATGATTAGAGTTTCACCTCAGATTCTTAATCAGAACACAGATAGGGTCAAGATGAAAATTGAGTATCTTGTAAAGAAAGGATTTTCTGTATCAGATTTAGTGAGTTTTCCATCATATCTTTCCTATAAATCTCCAAGAGTTAAGCTTAGGTTGTCAATGTATAACTGGCTCGTAGACCACGGGGCTGTGAATCCCGGGCTTGCTTTGAGCACCATTATCGCATGCACAGATAATTTATTCTTACAAAGTTATGTAAAACGCCATCCGTCTGGCCTTCAAGTTTGGGAAGAGTTGCAAAAAGAAATTCATTCTGAAGATTCATGA
Protein sequence

>MS.gene04610.t1

MIDLRKLRLTFTFFNLTKNHTNLKPSLNPRFYNTAKNPIQLVSKPKILSKSTIKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVHKTLKNEKSINTKRLISRHLRYNPINEFEPFFESLGLKPSEYESLLPRDLIFLNDDPLLMANYHSLCNYGVPRSKMGKIFKQTPQVFKFENGVLVSKIKAYEDLGISTSILVNAVAVSPGIVVGDVNVEFVKVVEMLKNIVAKGGDGDFDSGWIQWHFLDEVSCNWGLMLELLCLLSNVGFSEKQLAEIIRGSPCIIFEESGGKTLSMIGFLVKFGLSVNQIALLFLEFPQISMVKFFANLRVCLQLLTEIEMEAKEIGKIFQSHTVLAGSNTLKTTKSLLGCLNVGKRRLCSILQDNPLEMKNWVLGIRVKPMVGLRDLEEEKSRVGKTEFLLRLGYVENTKEMDWAFKAFRGKGAELQERFDFIVNTGLTRDEVRRMIRVSPQILNQNTDRVKMKIEYLVKKGFSVSDLVSFPSYLSYKSPRVKLRLSMYNWLVDHGAVNPGLALSTIIACTDNLFLQSYVKRHPSGLQVWEELQKEIHSEDS