AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04611.t1 MTR_7g093010 91.033 368 22 3 1 366 1 359 0.0 663
MS.gene04611.t1 MTR_1g053800 41.141 333 158 9 35 356 9 314 1.91e-55 184
MS.gene04611.t1 MTR_1g053835 43.275 171 87 3 191 352 220 389 1.37e-30 121
MS.gene04611.t1 MTR_7g093030 44.604 139 75 1 222 358 212 350 4.84e-27 110
MS.gene04611.t1 MTR_1g080330 42.647 136 77 1 212 346 165 300 5.22e-25 105
MS.gene04611.t1 MTR_7g098250 39.394 165 86 4 190 346 229 387 4.44e-24 103
MS.gene04611.t1 MTR_7g115530 43.651 126 70 1 222 346 218 343 2.92e-23 100
MS.gene04611.t1 MTR_2g027860 41.912 136 68 3 222 350 49 180 1.43e-21 94.4
MS.gene04611.t1 MTR_7g088070 32.877 146 98 0 205 350 33 178 1.09e-20 90.9
MS.gene04611.t1 MTR_7g088070 33.766 154 90 2 205 350 33 182 1.36e-20 90.9
MS.gene04611.t1 MTR_1g080330 40.678 118 69 1 212 328 165 282 2.33e-19 87.4
MS.gene04611.t1 MTR_5g027440 37.241 145 75 3 222 351 25 168 1.64e-17 82.0
MS.gene04611.t1 MTR_7g115530 40.741 108 63 1 222 328 218 325 4.09e-17 81.6
MS.gene04611.t1 MTR_7g093030 50.000 82 41 0 222 303 212 293 7.91e-17 80.5
MS.gene04611.t1 MTR_6g032990 35.461 141 74 2 221 344 41 181 8.84e-16 78.6
MS.gene04611.t1 MTR_6g444980 36.154 130 73 3 222 344 35 161 4.27e-15 76.3
MS.gene04611.t1 MTR_6g444980 36.154 130 73 3 222 344 35 161 5.54e-15 75.5
MS.gene04611.t1 MTR_2g027800 33.858 127 83 1 222 348 39 164 1.27e-14 73.9
MS.gene04611.t1 MTR_2g086450 33.113 151 68 3 221 344 44 188 1.50e-14 74.7
MS.gene04611.t1 MTR_1g090670 33.566 143 91 1 222 364 44 182 2.91e-14 72.8
MS.gene04611.t1 MTR_2g027800 32.667 150 86 3 222 364 39 180 1.56e-13 70.9
MS.gene04611.t1 MTR_7g068600 36.364 132 72 4 220 343 11 138 2.42e-13 69.3
MS.gene04611.t1 MTR_7g115530 41.237 97 44 2 222 318 218 301 3.55e-13 69.7
MS.gene04611.t1 MTR_8g086410 51.667 60 29 0 224 283 113 172 1.11e-12 69.3
MS.gene04611.t1 MTR_8g086410 60.377 53 21 0 224 276 111 163 1.30e-12 68.9
MS.gene04611.t1 MTR_8g086410 60.377 53 21 0 224 276 113 165 1.34e-12 68.9
MS.gene04611.t1 MTR_1g053830 42.391 92 47 3 206 296 1 87 2.19e-12 63.2
MS.gene04611.t1 MTR_7g115530 53.571 56 26 0 222 277 218 273 2.53e-12 67.8
MS.gene04611.t1 MTR_4g081710 31.852 135 80 2 222 344 17 151 4.50e-12 67.0
MS.gene04611.t1 MTR_7g115530 55.769 52 23 0 222 273 218 269 5.04e-12 66.2
MS.gene04611.t1 MTR_2g023580 47.826 69 29 1 215 276 41 109 2.04e-11 63.9
MS.gene04611.t1 MTR_3g450310 53.704 54 25 0 224 277 21 74 2.42e-11 63.2
MS.gene04611.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 2.81e-11 64.3
MS.gene04611.t1 MTR_7g115530 54.902 51 23 0 222 272 218 268 2.97e-11 63.9
MS.gene04611.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 3.63e-11 64.3
MS.gene04611.t1 MTR_0223s0040 45.714 70 37 1 224 293 20 88 4.55e-11 63.2
MS.gene04611.t1 MTR_7g069660 56.604 53 23 0 224 276 73 125 7.07e-11 63.2
MS.gene04611.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 7.76e-11 63.2
MS.gene04611.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 7.89e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04611.t1 AT5G06800 44.444 135 73 1 218 350 186 320 4.90e-27 110
MS.gene04611.t1 AT5G06800 45.000 140 70 2 218 350 186 325 1.68e-26 109
MS.gene04611.t1 AT2G01060 38.272 162 88 3 210 365 3 158 7.27e-24 100
MS.gene04611.t1 AT3G13040 36.813 182 99 3 194 364 213 389 6.17e-23 99.8
MS.gene04611.t1 AT3G13040 36.813 182 99 3 194 364 213 389 6.17e-23 99.8
MS.gene04611.t1 AT3G13040 36.813 182 99 3 194 364 213 389 6.17e-23 99.8
MS.gene04611.t1 AT5G29000 40.141 142 79 3 210 346 219 359 8.58e-23 99.0
MS.gene04611.t1 AT5G29000 40.141 142 79 3 210 346 176 316 1.10e-22 98.2
MS.gene04611.t1 AT5G29000 40.141 142 79 3 210 346 176 316 1.10e-22 98.2
MS.gene04611.t1 AT3G04450 40.909 132 72 2 220 346 236 366 1.56e-22 98.6
MS.gene04611.t1 AT3G04450 40.909 132 72 2 220 346 196 326 1.87e-22 98.2
MS.gene04611.t1 AT3G04450 40.909 132 72 2 220 346 196 326 1.87e-22 98.2
MS.gene04611.t1 AT4G28610 41.497 147 81 3 202 346 208 351 2.32e-22 97.8
MS.gene04611.t1 AT4G13640 36.765 136 73 3 222 344 37 172 5.44e-17 80.9
MS.gene04611.t1 AT1G79430 37.500 128 74 3 222 344 34 160 1.59e-16 80.5
MS.gene04611.t1 AT2G20400 38.686 137 72 3 222 352 231 361 2.24e-16 80.1
MS.gene04611.t1 AT3G24120 36.765 136 73 2 222 344 41 176 2.36e-16 79.0
MS.gene04611.t1 AT2G20400 38.686 137 73 3 222 352 231 362 5.43e-16 79.0
MS.gene04611.t1 AT3G04030 34.965 143 71 3 221 344 44 183 1.02e-15 78.2
MS.gene04611.t1 AT5G18240 34.286 140 76 2 221 344 44 183 1.61e-15 77.8
MS.gene04611.t1 AT5G18240 34.286 140 76 2 221 344 44 183 1.61e-15 77.8
MS.gene04611.t1 AT5G06800 61.667 60 21 1 218 275 186 245 1.85e-15 76.3
MS.gene04611.t1 AT4G13640 35.971 139 73 4 222 344 37 175 3.94e-15 75.5
MS.gene04611.t1 AT1G69580 34.868 152 75 4 222 351 34 183 1.28e-14 74.7
MS.gene04611.t1 AT3G24120 35.971 139 73 3 222 344 41 179 1.36e-14 73.9
MS.gene04611.t1 AT1G69580 33.987 153 76 4 222 351 34 184 3.49e-14 73.2
MS.gene04611.t1 AT5G29000 48.529 68 35 0 210 277 219 286 7.83e-14 72.0
MS.gene04611.t1 AT3G04450 51.724 58 28 0 220 277 236 293 2.47e-13 70.5
MS.gene04611.t1 AT2G42660 60.377 53 21 0 224 276 52 104 2.49e-13 69.7
MS.gene04611.t1 AT5G18240 33.571 140 75 3 221 344 44 181 2.86e-13 70.9
MS.gene04611.t1 AT3G12730 54.098 61 28 0 222 282 23 83 4.27e-13 68.6
MS.gene04611.t1 AT3G04030 33.566 143 72 4 221 344 44 182 5.04e-13 70.1
MS.gene04611.t1 AT2G06020 31.387 137 80 3 147 275 9 139 2.45e-12 67.4
MS.gene04611.t1 AT4G04605 47.619 63 32 1 224 286 16 77 4.23e-12 65.5
MS.gene04611.t1 AT3G04030 33.333 126 62 3 221 327 44 166 1.42e-11 65.9
MS.gene04611.t1 AT2G40260 54.717 53 24 0 224 276 84 136 1.78e-11 65.5
MS.gene04611.t1 AT5G18240 30.556 144 79 3 221 343 44 187 1.81e-11 65.5
MS.gene04611.t1 AT5G18240 30.556 144 79 3 221 343 44 187 1.81e-11 65.5
MS.gene04611.t1 AT1G14600 45.455 77 38 1 205 277 2 78 4.38e-11 63.2
MS.gene04611.t1 AT4G04555 54.902 51 23 0 226 276 18 68 6.31e-11 59.3
MS.gene04611.t1 AT2G38300 56.604 53 23 0 224 276 56 108 8.95e-11 63.2
MS.gene04611.t1 AT5G42630 40.506 79 45 1 201 277 82 160 9.67e-11 61.6

Find 60 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAATTGACCTGTTATT+TGG 0.085317 7.3:-17584434 None:intergenic
AAGCAGACTCCTCAACTTTA+TGG 0.179376 7.3:+17583399 MS.gene04611:CDS
GAACCAACCAAAGAAAATTT+TGG 0.205784 7.3:+17584389 MS.gene04611:CDS
CTTCTAACAATTCTGCTTCT+AGG 0.211425 7.3:+17583433 MS.gene04611:CDS
GAGGATGAGATTGAAGTTTC+TGG 0.281912 7.3:+17582282 MS.gene04611:CDS
AAGTATTTCGCAACAGTTAG+AGG 0.311657 7.3:+17584169 MS.gene04611:CDS
AAACAATTGACCTGTTATTT+GGG 0.315634 7.3:-17584433 None:intergenic
CAAACATCTCATGATGGTTT+TGG 0.318369 7.3:+17582198 MS.gene04611:CDS
ATTGGAGGGTCTGTTATCTT+TGG 0.328987 7.3:-17582324 None:intergenic
TCATGTTAAAAGCCATTTGC+AGG 0.345777 7.3:+17583675 MS.gene04611:CDS
ACGCATGCATAAAGCTTTGC+AGG 0.361361 7.3:+17583822 MS.gene04611:CDS
GTGATTCCTCAATTTGCTTA+AGG 0.361437 7.3:-17584121 None:intergenic
TTCAAGGGGCTTCTCATCAA+TGG 0.375794 7.3:-17582553 None:intergenic
AACAACCTAGTTAAGGTTGT+TGG 0.392826 7.3:+17582087 MS.gene04611:CDS
TTCTCTGAAAAGAAATTTCA+AGG 0.402613 7.3:-17582569 None:intergenic
TAGGTTGTTAATTCCTATGT+AGG 0.408171 7.3:-17582073 None:intergenic
AGGAATTAACAACCTAGTTA+AGG 0.413307 7.3:+17582080 MS.gene04611:CDS
TGTAGTGACAATGTTGTTGC+AGG 0.413465 7.3:-17582163 None:intergenic
TGTGTTCTGATCCAACAATT+TGG 0.429748 7.3:-17582116 None:intergenic
ACAACCTAGTTAAGGTTGTT+GGG 0.437913 7.3:+17582088 MS.gene04611:CDS
CAACATTGGTCAAAGATGTA+TGG 0.453490 7.3:+17582036 MS.gene04611:CDS
GTTGGGTCAGACCAAATTGT+TGG 0.464581 7.3:+17582105 MS.gene04611:CDS
CATACATCTTTGACCAATGT+TGG 0.474221 7.3:-17582035 None:intergenic
CAAAGATGTATGGAACTCAA+TGG 0.475646 7.3:+17582046 MS.gene04611:CDS
TGTAAAATTCTCTCCTCCAT+AGG 0.496495 7.3:-17582361 None:intergenic
AAAGATGTATGGAACTCAAT+GGG 0.496984 7.3:+17582047 MS.gene04611:CDS
TCTGTTCTATGTCCTTCCTC+AGG 0.498706 7.3:-17583944 None:intergenic
GCTTGACTATTCAGCATTGG+AGG 0.499564 7.3:-17582339 None:intergenic
CTTTGACCAATGTTGGTACA+TGG 0.506794 7.3:-17582028 None:intergenic
TTGTTGCAGGGTGACTTGAT+TGG 0.508916 7.3:-17582150 None:intergenic
CAAGGTCAAACATCTCATGA+TGG 0.511209 7.3:+17582192 MS.gene04611:CDS
CTGACCCAACAACCTTAACT+AGG 0.516049 7.3:-17582092 None:intergenic
TAGCAGCCTTAAGCAAATTG+AGG 0.522396 7.3:+17584115 MS.gene04611:intron
CTCTGAAAAGAAATTTCAAG+GGG 0.530710 7.3:-17582567 None:intergenic
CATGTAAAAGAAGAGTAAGA+TGG 0.531937 7.3:+17583466 MS.gene04611:CDS
TCTCTGAAAAGAAATTTCAA+GGG 0.533832 7.3:-17582568 None:intergenic
ATGCTGAATAGTCAAGCCTA+TGG 0.541285 7.3:+17582345 MS.gene04611:CDS
TAGGCTTGACTATTCAGCAT+TGG 0.544756 7.3:-17582342 None:intergenic
AGATTCATCAACAGAGTACA+AGG 0.551613 7.3:-17582403 None:intergenic
AATTGCAGAGGCAAAGCCTA+AGG 0.561046 7.3:+17583612 MS.gene04611:intron
CTTGACTATTCAGCATTGGA+GGG 0.565243 7.3:-17582338 None:intergenic
ATGATAATCGTTGATCACCT+TGG 0.567335 7.3:+17583513 MS.gene04611:CDS
ATCATATCTAGTATAGCCTT+AGG 0.576046 7.3:-17583628 None:intergenic
ACTCAATGGGAATCCTACAT+AGG 0.576742 7.3:+17582060 MS.gene04611:CDS
AGAAGCAGAATTGTTAGAAG+TGG 0.580769 7.3:-17583430 None:intergenic
ATAATCGTTGATCACCTTGG+TGG 0.592004 7.3:+17583516 MS.gene04611:CDS
ATGAGATTGAAGTTTCTGGT+TGG 0.603059 7.3:+17582286 MS.gene04611:CDS
AACCAACCATGTACCAACAT+TGG 0.603963 7.3:+17582022 None:intergenic
TTAAGCAAATTGAGGAATCA+CGG 0.605256 7.3:+17584123 MS.gene04611:CDS
CGCATGCATAAAGCTTTGCA+GGG 0.606639 7.3:+17583823 MS.gene04611:CDS
CTGAATAGTCAAGCCTATGG+AGG 0.621905 7.3:+17582348 MS.gene04611:CDS
AAGAAGAGTAAGATGGACAG+AGG 0.623246 7.3:+17583473 MS.gene04611:CDS
ATCACGGCAGTTGCATCTAG+AGG 0.629262 7.3:+17584139 MS.gene04611:CDS
GCACACATTCCATAAAGTTG+AGG 0.636332 7.3:-17583408 None:intergenic
CTTTCAGAAAGACCTGAGGA+AGG 0.638784 7.3:+17583932 MS.gene04611:intron
AGGTGAAGAATATTATGATG+AGG 0.647413 7.3:+17582263 MS.gene04611:CDS
GTAGTGACAATGTTGTTGCA+GGG 0.658470 7.3:-17582162 None:intergenic
CAAGGAGTTTGTGAACTGAG+AGG 0.666646 7.3:-17582385 None:intergenic
TTATCTTTCAGAAAGACCTG+AGG 0.675030 7.3:+17583928 MS.gene04611:intron
ACTTACTTTCTGGACCACCA+AGG 0.699661 7.3:-17583530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACAAATAAAAACA+AGG - chr7.3:17584289-17584308 None:intergenic 10.0%
!! AAAACTAAAAAGAAAATCAA+TGG + chr7.3:17583082-17583101 MS.gene04611:intron 15.0%
!! AAATTATTGAAATTGTTGAA+TGG - chr7.3:17583712-17583731 None:intergenic 15.0%
!! AGGAAAATAAACAAATAAAA+AGG - chr7.3:17583322-17583341 None:intergenic 15.0%
!! ATCTAATACTATAATTAAAC+AGG - chr7.3:17582761-17582780 None:intergenic 15.0%
!! GAATCTAATTATGAAATTTA+GGG + chr7.3:17582945-17582964 MS.gene04611:intron 15.0%
!! TCTAATAAAATTGATTAAAG+TGG + chr7.3:17583026-17583045 MS.gene04611:intron 15.0%
!! TGAATCTAATTATGAAATTT+AGG + chr7.3:17582944-17582963 MS.gene04611:intron 15.0%
!! TTACTAGTAATCTATTTATT+CGG + chr7.3:17583232-17583251 MS.gene04611:intron 15.0%
!!! TCATGGATTTTTTTTTTTAA+TGG + chr7.3:17582807-17582826 MS.gene04611:intron 15.0%
!! AAAAACATGATGAATTGTTT+AGG + chr7.3:17582520-17582539 MS.gene04611:CDS 20.0%
!! AAATCCATGAAATACTTAAA+AGG - chr7.3:17582797-17582816 None:intergenic 20.0%
!! AATATACAATTATGCTTTGA+TGG + chr7.3:17584193-17584212 MS.gene04611:intron 20.0%
!! AATTAGATTCATTGCATATA+TGG - chr7.3:17582935-17582954 None:intergenic 20.0%
!! CATTTCATATATAATTCAGA+TGG - chr7.3:17582650-17582669 None:intergenic 20.0%
!! TACTAGTAATCTATTTATTC+GGG + chr7.3:17583233-17583252 MS.gene04611:intron 20.0%
!! TTAGTTAATTACTTACTTTC+TGG - chr7.3:17583543-17583562 None:intergenic 20.0%
!!! AAAAGTAATGTTAGTTTTCA+AGG + chr7.3:17582243-17582262 MS.gene04611:CDS 20.0%
!!! AACAATTCATCATGTTTTTT+CGG - chr7.3:17582519-17582538 None:intergenic 20.0%
!!! AAGAATACTGTAACTTTTTT+TGG - chr7.3:17582725-17582744 None:intergenic 20.0%
!!! ACTAACATTACTTTTGATTT+TGG - chr7.3:17582238-17582257 None:intergenic 20.0%
!!! AGTTGGGAATTTTTTTTTAA+AGG + chr7.3:17583126-17583145 MS.gene04611:intron 20.0%
!!! TCACATAAACATTCTTTTAA+CGG + chr7.3:17583049-17583068 MS.gene04611:intron 20.0%
! ATTAGAAAAACACGTTAGAT+TGG - chr7.3:17583012-17583031 None:intergenic 25.0%
! CAAATAAAAACAAGGTTGTA+AGG - chr7.3:17584281-17584300 None:intergenic 25.0%
! TGGATTATAGCTTATTAGAA+AGG - chr7.3:17583342-17583361 None:intergenic 25.0%
!! AATTTCTTTTCAGAGAACTA+AGG + chr7.3:17582575-17582594 MS.gene04611:CDS 25.0%
!! ATTGTCACTACAAATTTTCA+AGG + chr7.3:17582174-17582193 MS.gene04611:CDS 25.0%
!! GAATATAGTAATTTTCAGTC+TGG + chr7.3:17582468-17582487 MS.gene04611:CDS 25.0%
!! TCTCTGAAAAGAAATTTCAA+GGG - chr7.3:17582571-17582590 None:intergenic 25.0%
!! TTCTCTGAAAAGAAATTTCA+AGG - chr7.3:17582572-17582591 None:intergenic 25.0%
!!! AAATTTAGGGTTTTGTGAAA+GGG + chr7.3:17582958-17582977 MS.gene04611:intron 25.0%
!!! TAGTCCTTTTAAGTATTTCA+TGG + chr7.3:17582790-17582809 MS.gene04611:intron 25.0%
!!! TTTTTTTCTCTTCTGATTAC+TGG + chr7.3:17584057-17584076 MS.gene04611:intron 25.0%
AAAGATGTATGGAACTCAAT+GGG + chr7.3:17582047-17582066 MS.gene04611:CDS 30.0%
AAAGGGACAATAATGAATTG+CGG + chr7.3:17582975-17582994 MS.gene04611:intron 30.0%
AAGTTATGGGACTTATAGTT+GGG + chr7.3:17583110-17583129 MS.gene04611:intron 30.0%
ACAACACTGCTTACTTATTA+AGG + chr7.3:17583874-17583893 MS.gene04611:intron 30.0%
ACAATGTTAGAGTCAATTAC+CGG - chr7.3:17583764-17583783 None:intergenic 30.0%
AGGAATTAACAACCTAGTTA+AGG + chr7.3:17582080-17582099 MS.gene04611:CDS 30.0%
AGGTGAAGAATATTATGATG+AGG + chr7.3:17582263-17582282 MS.gene04611:CDS 30.0%
ATCATATCTAGTATAGCCTT+AGG - chr7.3:17583631-17583650 None:intergenic 30.0%
CATGTAAAAGAAGAGTAAGA+TGG + chr7.3:17583466-17583485 MS.gene04611:CDS 30.0%
TAGGTTGTTAATTCCTATGT+AGG - chr7.3:17582076-17582095 None:intergenic 30.0%
TGGTTTCATCTATTTGTGAA+TGG + chr7.3:17582827-17582846 MS.gene04611:intron 30.0%
TTAAGCAAATTGAGGAATCA+CGG + chr7.3:17584123-17584142 MS.gene04611:CDS 30.0%
! AAACATTCTTTTAACGGAGT+TGG + chr7.3:17583055-17583074 MS.gene04611:intron 30.0%
! ATGGCTTTTAACATGAGAAA+TGG - chr7.3:17583671-17583690 None:intergenic 30.0%
! CTCTGAAAAGAAATTTCAAG+GGG - chr7.3:17582570-17582589 None:intergenic 30.0%
! CTTACTCTTCTTTTACATGT+TGG - chr7.3:17583465-17583484 None:intergenic 30.0%
! GAACCAACCAAAGAAAATTT+TGG + chr7.3:17584389-17584408 MS.gene04611:CDS 30.0%
! GTTGTGTCCAAAATTTTCTT+TGG - chr7.3:17584399-17584418 None:intergenic 30.0%
! TGTCCAAAATTTTCTTTGGT+TGG - chr7.3:17584395-17584414 None:intergenic 30.0%
! TTCACTGATTATAATTGCAG+AGG + chr7.3:17583600-17583619 MS.gene04611:intron 30.0%
!! GAAATAGTTTTACCTGCAAA+TGG - chr7.3:17583690-17583709 None:intergenic 30.0%
!! GAAATTTAGGGTTTTGTGAA+AGG + chr7.3:17582957-17582976 MS.gene04611:intron 30.0%
AACAACCTAGTTAAGGTTGT+TGG + chr7.3:17582087-17582106 MS.gene04611:CDS 35.0%
AAGTATTTCGCAACAGTTAG+AGG + chr7.3:17584169-17584188 MS.gene04611:CDS 35.0%
AATCAATGGTGTCCAAGTTA+TGG + chr7.3:17583096-17583115 MS.gene04611:intron 35.0%
ACAACCTAGTTAAGGTTGTT+GGG + chr7.3:17582088-17582107 MS.gene04611:CDS 35.0%
ACACTGCTTACTTATTAAGG+AGG + chr7.3:17583877-17583896 MS.gene04611:intron 35.0%
AGAAGCAGAATTGTTAGAAG+TGG - chr7.3:17583433-17583452 None:intergenic 35.0%
AGATTCATCAACAGAGTACA+AGG - chr7.3:17582406-17582425 None:intergenic 35.0%
ATCAATGGTGTCCAAGTTAT+GGG + chr7.3:17583097-17583116 MS.gene04611:intron 35.0%
ATCCATGACTTACTATAGTC+AGG + chr7.3:17583357-17583376 MS.gene04611:intron 35.0%
ATGATAATCGTTGATCACCT+TGG + chr7.3:17583513-17583532 MS.gene04611:CDS 35.0%
ATTTCTCCAACTCGTCAATT+AGG + chr7.3:17583281-17583300 MS.gene04611:intron 35.0%
CAAAGATGTATGGAACTCAA+TGG + chr7.3:17582046-17582065 MS.gene04611:CDS 35.0%
CAACATTGGTCAAAGATGTA+TGG + chr7.3:17582036-17582055 MS.gene04611:CDS 35.0%
CAACTATAAGTCCCATAACT+TGG - chr7.3:17583111-17583130 None:intergenic 35.0%
CAAGTTATGGGACTTATAGT+TGG + chr7.3:17583109-17583128 MS.gene04611:intron 35.0%
CAATATCCTAATTGACGAGT+TGG - chr7.3:17583290-17583309 None:intergenic 35.0%
CATACATCTTTGACCAATGT+TGG - chr7.3:17582038-17582057 None:intergenic 35.0%
CTTCTAACAATTCTGCTTCT+AGG + chr7.3:17583433-17583452 MS.gene04611:CDS 35.0%
GTTGTAAGGATATACGACTT+TGG - chr7.3:17584267-17584286 None:intergenic 35.0%
TCATGTTAAAAGCCATTTGC+AGG + chr7.3:17583675-17583694 MS.gene04611:CDS 35.0%
TGTAAAATTCTCTCCTCCAT+AGG - chr7.3:17582364-17582383 None:intergenic 35.0%
TGTGAATGGTGAATTGTGTT+GGG + chr7.3:17582841-17582860 MS.gene04611:intron 35.0%
TGTGTTCTGATCCAACAATT+TGG - chr7.3:17582119-17582138 None:intergenic 35.0%
TTATCTTTCAGAAAGACCTG+AGG + chr7.3:17583928-17583947 MS.gene04611:intron 35.0%
TTGTGAATGGTGAATTGTGT+TGG + chr7.3:17582840-17582859 MS.gene04611:intron 35.0%
TTGTGATATGGGGAATAAGA+AGG + chr7.3:17582868-17582887 MS.gene04611:intron 35.0%
TTTAGGCAAAATACATCGTG+CGG - chr7.3:17583184-17583203 None:intergenic 35.0%
! AATTTTGGACACAACGAGAA+AGG + chr7.3:17584404-17584423 MS.gene04611:CDS 35.0%
! ATTCTTTTAACGGAGTTGGA+TGG + chr7.3:17583059-17583078 MS.gene04611:intron 35.0%
! CAAACATCTCATGATGGTTT+TGG + chr7.3:17582198-17582217 MS.gene04611:CDS 35.0%
! GTGATTCCTCAATTTGCTTA+AGG - chr7.3:17584124-17584143 None:intergenic 35.0%
!! ATGAGATTGAAGTTTCTGGT+TGG + chr7.3:17582286-17582305 MS.gene04611:CDS 35.0%
!!! CATCATGTTTTTTCGGAAAG+TGG - chr7.3:17582512-17582531 None:intergenic 35.0%
AAGAAGAGTAAGATGGACAG+AGG + chr7.3:17583473-17583492 MS.gene04611:CDS 40.0%
AAGCAGACTCCTCAACTTTA+TGG + chr7.3:17583399-17583418 MS.gene04611:CDS 40.0%
ACTCAATGGGAATCCTACAT+AGG + chr7.3:17582060-17582079 MS.gene04611:CDS 40.0%
AGCCTGACTATAGTAAGTCA+TGG - chr7.3:17583362-17583381 None:intergenic 40.0%
ATAATCGTTGATCACCTTGG+TGG + chr7.3:17583516-17583535 MS.gene04611:CDS 40.0%
ATAATGAATTGCGGAGGGTA+AGG + chr7.3:17582984-17583003 MS.gene04611:intron 40.0%
ATGCTGAATAGTCAAGCCTA+TGG + chr7.3:17582345-17582364 MS.gene04611:CDS 40.0%
ATTGGAGGGTCTGTTATCTT+TGG - chr7.3:17582327-17582346 None:intergenic 40.0%
CAAGGTCAAACATCTCATGA+TGG + chr7.3:17582192-17582211 MS.gene04611:CDS 40.0%
GAGGATGAGATTGAAGTTTC+TGG + chr7.3:17582282-17582301 MS.gene04611:CDS 40.0%
GCAACTTTCTTTGCGTCTAA+AGG - chr7.3:17584318-17584337 None:intergenic 40.0%
GCACACATTCCATAAAGTTG+AGG - chr7.3:17583411-17583430 None:intergenic 40.0%
GGACAATAATGAATTGCGGA+GGG + chr7.3:17582979-17582998 MS.gene04611:intron 40.0%
GTAGTGACAATGTTGTTGCA+GGG - chr7.3:17582165-17582184 None:intergenic 40.0%
TAATGAATTGCGGAGGGTAA+GGG + chr7.3:17582985-17583004 MS.gene04611:intron 40.0%
TAGCAGCCTTAAGCAAATTG+AGG + chr7.3:17584115-17584134 MS.gene04611:intron 40.0%
TAGGCTTGACTATTCAGCAT+TGG - chr7.3:17582345-17582364 None:intergenic 40.0%
TGTAGATCGACATTTCTGCA+CGG - chr7.3:17583800-17583819 None:intergenic 40.0%
TGTAGTGACAATGTTGTTGC+AGG - chr7.3:17582166-17582185 None:intergenic 40.0%
TGTTGGGCTGATTGTGATAT+GGG + chr7.3:17582857-17582876 MS.gene04611:intron 40.0%
! AGCGCTATTACGTCGATTAA+AGG + chr7.3:17583157-17583176 MS.gene04611:intron 40.0%
! CTTGACTATTCAGCATTGGA+GGG - chr7.3:17582341-17582360 None:intergenic 40.0%
! GACGAGTTGGAGAAATTGTT+AGG - chr7.3:17583277-17583296 None:intergenic 40.0%
! GCGCTATTACGTCGATTAAA+GGG + chr7.3:17583158-17583177 MS.gene04611:intron 40.0%
! TCAATTTGCTTAAGGCTGCT+AGG - chr7.3:17584116-17584135 None:intergenic 40.0%
! TTTTGCACATGCGTGACTTT+AGG - chr7.3:17583201-17583220 None:intergenic 40.0%
AATTGCAGAGGCAAAGCCTA+AGG + chr7.3:17583612-17583631 MS.gene04611:intron 45.0%
ACGCATGCATAAAGCTTTGC+AGG + chr7.3:17583822-17583841 MS.gene04611:CDS 45.0%
ACTTACTTTCTGGACCACCA+AGG - chr7.3:17583533-17583552 None:intergenic 45.0%
CAAGGAGTTTGTGAACTGAG+AGG - chr7.3:17582388-17582407 None:intergenic 45.0%
CGCATGCATAAAGCTTTGCA+GGG + chr7.3:17583823-17583842 MS.gene04611:CDS 45.0%
CTGAATAGTCAAGCCTATGG+AGG + chr7.3:17582348-17582367 MS.gene04611:CDS 45.0%
CTGACCCAACAACCTTAACT+AGG - chr7.3:17582095-17582114 None:intergenic 45.0%
CTTTCAGAAAGACCTGAGGA+AGG + chr7.3:17583932-17583951 MS.gene04611:intron 45.0%
GAGTCAATTACCGGCAAATG+AGG - chr7.3:17583755-17583774 None:intergenic 45.0%
GCTTAAGGCTGCTAGGAAAT+AGG - chr7.3:17584109-17584128 None:intergenic 45.0%
GGGACAATAATGAATTGCGG+AGG + chr7.3:17582978-17582997 MS.gene04611:intron 45.0%
GTGTTGGGCTGATTGTGATA+TGG + chr7.3:17582856-17582875 MS.gene04611:intron 45.0%
GTTGGGCTGATTGTGATATG+GGG + chr7.3:17582858-17582877 MS.gene04611:intron 45.0%
GTTGGGTCAGACCAAATTGT+TGG + chr7.3:17582105-17582124 MS.gene04611:CDS 45.0%
TCTGTTCTATGTCCTTCCTC+AGG - chr7.3:17583947-17583966 None:intergenic 45.0%
TTCAAGGGGCTTCTCATCAA+TGG - chr7.3:17582556-17582575 None:intergenic 45.0%
TTCTGTGAAGCCTCATTTGC+CGG + chr7.3:17583742-17583761 MS.gene04611:intron 45.0%
TTGTTGCAGGGTGACTTGAT+TGG - chr7.3:17582153-17582172 None:intergenic 45.0%
! GCTTGACTATTCAGCATTGG+AGG - chr7.3:17582342-17582361 None:intergenic 45.0%
ATCACGGCAGTTGCATCTAG+AGG + chr7.3:17584139-17584158 MS.gene04611:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 17582030 17584441 17582030 ID=MS.gene04611
chr7.3 mRNA 17582030 17584441 17582030 ID=MS.gene04611.t1;Parent=MS.gene04611
chr7.3 exon 17582030 17582596 17582030 ID=MS.gene04611.t1.exon1;Parent=MS.gene04611.t1
chr7.3 CDS 17582030 17582596 17582030 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17583375 17583546 17583375 ID=MS.gene04611.t1.exon2;Parent=MS.gene04611.t1
chr7.3 CDS 17583375 17583546 17583375 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17583620 17583696 17583620 ID=MS.gene04611.t1.exon3;Parent=MS.gene04611.t1
chr7.3 CDS 17583620 17583696 17583620 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17583805 17583844 17583805 ID=MS.gene04611.t1.exon4;Parent=MS.gene04611.t1
chr7.3 CDS 17583805 17583844 17583805 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17583939 17583993 17583939 ID=MS.gene04611.t1.exon5;Parent=MS.gene04611.t1
chr7.3 CDS 17583939 17583993 17583939 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17584121 17584190 17584121 ID=MS.gene04611.t1.exon6;Parent=MS.gene04611.t1
chr7.3 CDS 17584121 17584190 17584121 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
chr7.3 exon 17584322 17584441 17584322 ID=MS.gene04611.t1.exon7;Parent=MS.gene04611.t1
chr7.3 CDS 17584322 17584441 17584322 ID=cds.MS.gene04611.t1;Parent=MS.gene04611.t1
Gene Sequence

>MS.gene04611

ATGTACCAACATTGGTCAAAGATGTATGGAACTCAATGGGAATCCTACATAGGAATTAACAACCTAGTTAAGGTTGTTGGGTCAGACCAAATTGTTGGATCAGAACACATGAGTTATGAGCCAATCAAGTCACCCTGCAACAACATTGTCACTACAAATTTTCAAGGTCAAACATCTCATGATGGTTTTGGTGCAGTGAGTGTAGCCAAAATCAAAAGTAATGTTAGTTTTCAAGGTGAAGAATATTATGATGAGGATGAGATTGAAGTTTCTGGTTGGTGTTTTGATCAGTTTCCAAAGATAACAGACCCTCCAATGCTGAATAGTCAAGCCTATGGAGGAGAGAATTTTACAACCTCTCAGTTCACAAACTCCTTGTACTCTGTTGATGAATCTTTGTTGTCTAACAGTGCAGATAGTCATAATTCTTCTGAAGAAGAATATAGTAATTTTCAGTCTGGAAATATGTCATTTTATGACCACTTTCCGAAAAAACATGATGAATTGTTTAGGAATGATGCTTCCATTGATGAGAAGCCCCTTGAAATTTCTTTTCAGAGAACTAAGGTAATTCTTTCTTTCTTTCTTTCTTTGTATGTAGCTTGTAATTTTTTATTCCATCTGAATTATATATGAAATGATATATCATGTTGTGCTTTAACTTGTTTAATTATATTAGAGATTAGTGCTGTCCAAAAAAAGTTACAGTATTCTTTGTGCATTCATAACCTGTTTAATTATAGTATTAGATAATAGATATTAGTCCTTTTAAGTATTTCATGGATTTTTTTTTTTAATGGTTTCATCTATTTGTGAATGGTGAATTGTGTTGGGCTGATTGTGATATGGGGAATAAGAAGGTGATATAATATGAGATTGAAATTAATGTTTTGATTTTTCTTCCATATATGCAATGAATCTAATTATGAAATTTAGGGTTTTGTGAAAGGGACAATAATGAATTGCGGAGGGTAAGGGTCCAATCTAACGTGTTTTTCTAATAAAATTGATTAAAGTGGTCACATAAACATTCTTTTAACGGAGTTGGATGGAAAACTAAAAAGAAAATCAATGGTGTCCAAGTTATGGGACTTATAGTTGGGAATTTTTTTTTAAAGGACTACTAAAGCGCTATTACGTCGATTAAAGGGCCGCACGATGTATTTTGCCTAAAGTCACGCATGTGCAAAAACAAGAGTAGTTTACTAGTAATCTATTTATTCGGGTTAAGTGCTAAGTGTTAACCTAACAATTTCTCCAACTCGTCAATTAGGATATTGTAATCTATGCCTTTTTATTTGTTTATTTTCCTTTCTAATAAGCTATAATCCATGACTTACTATAGTCAGGCTCATCTACAAAGTCACAAAAGCAGACTCCTCAACTTTATGGAATGTGTGCCACTTCTAACAATTCTGCTTCTAGGAAAGCTCCAACATGTAAAAGAAGAGTAAGATGGACAGAGGATCTGCATGAATCATTCATGATAATCGTTGATCACCTTGGTGGTCCAGAAAGTAAGTAATTAACTAAGTAATAGCATTAGTTACACATAAGCAAATTCAATTAATTCACTGATTATAATTGCAGAGGCAAAGCCTAAGGCTATACTAGATATGATGAAATCAAATTTGCTATCCATTTCTCATGTTAAAAGCCATTTGCAGGTAAAACTATTTCCATTCAACAATTTCAATAATTTGTAAATGTTGTTCTGTGAAGCCTCATTTGCCGGTAATTGACTCTAACATTGTTCTTATATGATTGCCGTGCAGAAATGTCGATCTACAATACGCATGCATAAAGCTTTGCAGGGTAAATTAATTTTTTCATTGCATTCTATTACAACACTGCTTACTTATTAAGGAGGCTATGCGTATATTGTGACACGTTTATCTTTATCTTTCAGAAAGACCTGAGGAAGGACATAGAACAGATAGAGTCGCAGATCTTCAACTCAAAATGTAAATATTTTAGTGTTACGAATGATACTTATTGATTCTTTATGTAGTAATTGCAAGTTTTTTTTTTTTTCTCTTCTGATTACTGGTTTTTTAAATTTATACACTTTGTTTTCCTATTTCCTAGCAGCCTTAAGCAAATTGAGGAATCACGGCAGTTGCATCTAGAGGTTCGAAAAAGTATTTCGCAACAGTTAGAGGTAATATACAATTATGCTTTGATGGAAACAAATTATACAGAATAAGTTATTATTGTTGAGATCATGAATCAGTCCAAAGTCGTATATCCTTACAACCTTGTTTTTATTTGTTATTTTTTCTTCGCCTTTAGACGCAAAGAAAGTTGCAAATACTAATTGAACAACATGACAAGAAGCTCAAACTAATGCAAAAAGAAAGAACCAACCAAAGAAAATTTTGGACACAACGAGAAAGGACAGTTCCCAAATAA
Protein sequence

>MS.gene04611.t1

MYQHWSKMYGTQWESYIGINNLVKVVGSDQIVGSEHMSYEPIKSPCNNIVTTNFQGQTSHDGFGAVSVAKIKSNVSFQGEEYYDEDEIEVSGWCFDQFPKITDPPMLNSQAYGGENFTTSQFTNSLYSVDESLLSNSADSHNSSEEEYSNFQSGNMSFYDHFPKKHDELFRNDASIDEKPLEISFQRTKSGSSTKSQKQTPQLYGMCATSNNSASRKAPTCKRRVRWTEDLHESFMIIVDHLGGPEKAKPKAILDMMKSNLLSISHVKSHLQKCRSTIRMHKALQERPEEGHRTDRVADLQLKILKQIEESRQLHLEVRKSISQQLETQRKLQILIEQHDKKLKLMQKERTNQRKFWTQRERTVPK