AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04612.t1 MTR_7g093030 95.568 361 8 2 1 359 33 387 0.0 697
MS.gene04612.t1 MTR_7g093030 96.269 268 4 1 1 268 33 294 0.0 528
MS.gene04612.t1 MTR_1g053835 61.345 357 112 8 1 345 80 422 1.11e-136 396
MS.gene04612.t1 MTR_7g098250 51.111 180 87 1 175 353 251 430 1.95e-58 197
MS.gene04612.t1 MTR_1g080330 57.042 142 60 1 177 317 166 307 3.99e-51 175
MS.gene04612.t1 MTR_7g115530 53.521 142 65 1 185 325 217 358 1.90e-47 166
MS.gene04612.t1 MTR_7g088070 50.725 138 68 0 184 321 48 185 1.90e-47 162
MS.gene04612.t1 MTR_2g027860 51.724 145 67 2 186 327 49 193 7.36e-46 159
MS.gene04612.t1 MTR_7g088070 49.296 142 68 1 184 321 48 189 3.15e-45 156
MS.gene04612.t1 MTR_1g080330 57.265 117 49 1 177 292 166 282 5.74e-41 145
MS.gene04612.t1 MTR_7g115530 56.881 109 46 1 185 292 217 325 4.80e-38 139
MS.gene04612.t1 MTR_6g032990 45.395 152 64 3 185 318 41 191 9.12e-37 137
MS.gene04612.t1 MTR_2g086450 45.087 173 69 6 169 317 27 197 6.50e-36 134
MS.gene04612.t1 MTR_1g053830 61.053 95 37 0 169 263 1 95 2.03e-35 125
MS.gene04612.t1 MTR_7g068600 47.183 142 70 3 173 310 1 141 2.53e-35 129
MS.gene04612.t1 MTR_1g053800 50.350 143 70 1 175 316 165 307 5.38e-35 130
MS.gene04612.t1 MTR_5g041350 35.032 157 89 2 185 328 14 170 2.18e-30 119
MS.gene04612.t1 MTR_2g027800 36.723 177 95 5 186 358 39 202 2.61e-30 117
MS.gene04612.t1 MTR_5g027440 41.096 146 73 3 186 318 25 170 9.79e-30 115
MS.gene04612.t1 MTR_6g444980 40.000 160 84 5 179 328 26 183 7.35e-29 115
MS.gene04612.t1 MTR_4g081710 40.000 145 75 4 185 317 16 160 1.05e-28 114
MS.gene04612.t1 MTR_2g027800 34.946 186 100 4 186 358 39 216 3.74e-28 112
MS.gene04612.t1 MTR_7g115530 56.471 85 36 1 185 268 217 301 7.70e-28 111
MS.gene04612.t1 MTR_6g444980 40.000 155 83 4 179 325 26 178 7.87e-28 112
MS.gene04612.t1 MTR_7g115530 66.667 66 22 0 185 250 217 282 6.02e-26 107
MS.gene04612.t1 MTR_1g090670 36.196 163 83 4 186 333 44 200 9.93e-26 105
MS.gene04612.t1 MTR_7g093010 43.357 143 77 2 177 317 204 344 4.93e-25 104
MS.gene04612.t1 MTR_7g115530 67.925 53 17 0 185 237 217 269 1.27e-19 87.8
MS.gene04612.t1 MTR_7g115530 67.308 52 17 0 185 236 217 268 9.50e-19 85.9
MS.gene04612.t1 MTR_3g064840 48.837 86 41 2 188 271 276 360 7.54e-18 84.7
MS.gene04612.t1 MTR_7g069660 49.367 79 39 1 182 260 67 144 9.90e-18 83.6
MS.gene04612.t1 MTR_8g066310 54.412 68 29 1 188 253 175 242 1.56e-17 83.2
MS.gene04612.t1 MTR_2g023580 59.016 61 25 0 182 242 51 111 2.23e-17 80.9
MS.gene04612.t1 MTR_2g084230 38.125 160 85 5 108 261 26 177 2.30e-17 82.0
MS.gene04612.t1 MTR_2g084230 38.125 160 85 5 108 261 26 177 3.30e-17 82.4
MS.gene04612.t1 MTR_8g086410 56.452 62 27 0 182 243 107 168 6.34e-17 82.0
MS.gene04612.t1 MTR_8g086410 56.452 62 27 0 182 243 105 166 6.40e-17 82.0
MS.gene04612.t1 MTR_6g071625 60.000 55 22 0 188 242 204 258 4.39e-16 79.0
MS.gene04612.t1 MTR_1g112370 50.000 78 35 2 169 242 1 78 4.46e-16 78.6
MS.gene04612.t1 MTR_3g450310 55.932 59 26 0 184 242 17 75 6.66e-16 76.3
MS.gene04612.t1 MTR_5g029470 60.000 55 22 0 188 242 221 275 6.95e-16 78.6
MS.gene04612.t1 MTR_1g021520 53.968 63 29 0 188 250 128 190 9.80e-16 77.0
MS.gene04612.t1 MTR_0223s0040 55.738 61 27 0 182 242 14 74 1.19e-15 76.6
MS.gene04612.t1 MTR_2g016220 54.839 62 28 0 182 243 85 146 1.20e-15 77.8
MS.gene04612.t1 MTR_2g016220 54.839 62 28 0 182 243 85 146 1.21e-15 77.8
MS.gene04612.t1 MTR_8g086410 55.932 59 26 0 182 240 107 165 2.60e-15 77.0
MS.gene04612.t1 MTR_2g016220 51.515 66 28 1 182 243 85 150 1.04e-13 72.0
MS.gene04612.t1 MTR_4g021790 51.786 56 26 1 184 239 166 220 6.82e-12 65.5
MS.gene04612.t1 MTR_4g113140 49.231 65 33 0 175 239 224 288 8.94e-12 66.2
MS.gene04612.t1 MTR_4g021855 50.000 62 30 1 178 239 160 220 9.32e-12 65.5
MS.gene04612.t1 MTR_1g093080 37.755 98 46 1 170 252 180 277 2.78e-11 64.7
MS.gene04612.t1 MTR_5g017980 53.571 56 26 0 184 239 191 246 8.00e-11 62.8
MS.gene04612.t1 MTR_4g097835 64.444 45 15 1 251 295 8 51 8.39e-11 57.4
MS.gene04612.t1 MTR_4g086835 50.877 57 28 0 183 239 271 327 9.46e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04612.t1 AT5G06800 57.727 220 86 6 109 322 110 328 6.22e-69 221
MS.gene04612.t1 AT5G06800 56.444 225 86 7 109 322 110 333 2.55e-66 214
MS.gene04612.t1 AT5G29000 53.947 152 66 1 173 320 175 326 2.29e-52 178
MS.gene04612.t1 AT5G29000 53.947 152 66 1 173 320 175 326 2.29e-52 178
MS.gene04612.t1 AT5G29000 53.947 152 66 1 173 320 218 369 4.07e-52 178
MS.gene04612.t1 AT3G04450 45.055 182 89 3 143 320 162 336 9.61e-50 172
MS.gene04612.t1 AT3G04450 45.055 182 89 3 143 320 162 336 9.61e-50 172
MS.gene04612.t1 AT3G04450 45.055 182 89 3 143 320 202 376 2.34e-49 172
MS.gene04612.t1 AT4G28610 54.861 144 63 1 173 314 212 355 7.37e-49 169
MS.gene04612.t1 AT2G01060 50.331 151 73 2 184 332 13 163 2.54e-47 162
MS.gene04612.t1 AT3G13040 48.214 168 78 4 159 317 211 378 1.28e-44 159
MS.gene04612.t1 AT3G13040 48.214 168 78 4 159 317 211 378 1.28e-44 159
MS.gene04612.t1 AT3G13040 48.214 168 78 4 159 317 211 378 1.28e-44 159
MS.gene04612.t1 AT2G20400 53.077 130 60 1 186 314 231 360 9.40e-42 150
MS.gene04612.t1 AT2G20400 53.435 131 59 2 186 314 231 361 3.23e-40 146
MS.gene04612.t1 AT3G04030 45.963 161 69 3 175 317 32 192 7.19e-38 140
MS.gene04612.t1 AT5G06800 56.081 148 58 6 109 250 110 256 2.77e-37 135
MS.gene04612.t1 AT5G18240 44.720 161 71 3 176 318 33 193 1.16e-36 137
MS.gene04612.t1 AT5G18240 44.720 161 71 3 176 318 33 193 1.16e-36 137
MS.gene04612.t1 AT3G04030 44.720 161 70 4 175 317 32 191 6.69e-35 132
MS.gene04612.t1 AT3G24120 41.667 156 71 2 186 321 41 196 2.12e-34 128
MS.gene04612.t1 AT1G69580 42.581 155 63 3 185 317 33 183 3.66e-34 129
MS.gene04612.t1 AT5G18240 44.099 161 70 4 176 318 33 191 1.09e-33 129
MS.gene04612.t1 AT1G69580 41.667 156 64 3 185 317 33 184 4.28e-33 126
MS.gene04612.t1 AT3G04030 43.478 161 67 4 175 317 32 186 1.19e-32 125
MS.gene04612.t1 AT1G79430 43.243 148 76 4 179 319 25 171 2.33e-32 124
MS.gene04612.t1 AT3G24120 40.881 159 71 3 186 321 41 199 2.37e-32 123
MS.gene04612.t1 AT4G13640 34.737 190 108 2 186 359 37 226 2.54e-32 123
MS.gene04612.t1 AT5G45580 40.606 165 67 5 186 324 7 166 3.74e-32 122
MS.gene04612.t1 AT5G45580 40.606 165 67 5 186 324 23 182 3.98e-32 122
MS.gene04612.t1 AT5G18240 42.236 161 69 4 176 318 33 187 2.34e-31 122
MS.gene04612.t1 AT5G18240 42.236 161 69 4 176 318 33 187 2.34e-31 122
MS.gene04612.t1 AT4G13640 34.184 196 104 4 186 359 37 229 2.40e-30 117
MS.gene04612.t1 AT2G01060 49.123 114 56 2 221 332 1 114 1.44e-28 111
MS.gene04612.t1 AT5G29000 57.955 88 35 1 173 258 218 305 2.54e-28 112
MS.gene04612.t1 AT3G04450 46.154 104 49 2 143 246 202 298 3.10e-26 107
MS.gene04612.t1 AT3G12730 38.562 153 81 5 177 317 12 163 3.64e-25 102
MS.gene04612.t1 AT2G42660 55.072 69 31 0 182 250 46 114 3.08e-19 86.7
MS.gene04612.t1 AT3G04030 41.379 116 52 2 218 317 1 116 2.91e-18 84.7
MS.gene04612.t1 AT4G04605 45.263 95 48 2 182 276 10 100 5.16e-17 79.3
MS.gene04612.t1 AT2G38300 58.065 62 26 0 182 243 50 111 6.18e-17 81.3
MS.gene04612.t1 AT2G02060 63.793 58 21 0 182 239 25 82 8.17e-17 79.7
MS.gene04612.t1 AT2G02060 63.793 58 21 0 182 239 25 82 8.17e-17 79.7
MS.gene04612.t1 AT4G17695 54.412 68 29 1 188 253 166 233 8.35e-17 80.9
MS.gene04612.t1 AT1G14600 58.065 62 26 0 182 243 19 80 1.55e-16 79.0
MS.gene04612.t1 AT1G32240 54.412 68 29 1 188 253 215 282 1.81e-16 80.1
MS.gene04612.t1 AT1G32240 54.412 68 29 1 188 253 215 282 2.21e-16 80.1
MS.gene04612.t1 AT5G16560 60.000 55 22 0 188 242 221 275 5.75e-16 79.0
MS.gene04612.t1 AT1G79430 38.318 107 60 3 218 319 1 106 1.00e-15 77.0
MS.gene04612.t1 AT5G42630 51.562 64 31 0 188 251 107 170 2.14e-15 75.1
MS.gene04612.t1 AT2G06020 54.386 57 26 0 186 242 86 142 3.09e-15 75.9
MS.gene04612.t1 AT5G42630 51.562 64 31 0 188 251 107 170 3.50e-15 75.5
MS.gene04612.t1 AT2G40260 57.627 59 24 1 185 242 80 138 7.07e-15 75.9
MS.gene04612.t1 AT4G04580 50.820 61 30 0 182 242 10 70 5.04e-14 69.7
MS.gene04612.t1 AT3G04030 37.931 116 50 3 218 317 1 110 1.87e-13 70.9
MS.gene04612.t1 AT4G04555 51.471 68 28 1 180 242 3 70 3.38e-13 65.9
MS.gene04612.t1 AT4G37180 50.000 64 32 0 176 239 200 263 6.57e-13 69.3
MS.gene04612.t1 AT4G37180 50.000 64 32 0 176 239 207 270 7.97e-13 69.3
MS.gene04612.t1 AT5G18240 35.897 117 53 3 218 318 1 111 2.53e-12 67.4
MS.gene04612.t1 AT2G40970 46.053 76 38 2 166 239 83 157 8.78e-12 65.1
MS.gene04612.t1 AT2G03500 49.254 67 31 1 173 239 223 286 2.41e-11 65.1
MS.gene04612.t1 AT5G58080 51.667 60 28 1 180 239 188 246 5.11e-11 64.3

Find 51 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCATCATTGATTGTATT+TGG 0.166617 7.3:-17569018 None:intergenic
AAGGGAAAACAATCATTTAT+TGG 0.215858 7.3:+17567051 MS.gene04612:CDS
TCCCTTTGTGTCAATCTCTA+AGG 0.220544 7.3:+17567032 MS.gene04612:CDS
AATTATGTGTTCGGAGGTTT+TGG 0.254189 7.3:-17569100 None:intergenic
CAGCAAAAGTTGTTCTTTGA+TGG 0.257577 7.3:+17567232 MS.gene04612:CDS
ATCATATAAGGTTAATGATT+TGG 0.267300 7.3:+17567006 MS.gene04612:CDS
ATCATCTTCAATATAGCTTT+TGG 0.290192 7.3:-17567944 None:intergenic
TTTGAGTTCTCAATCATATA+AGG 0.290541 7.3:+17566994 MS.gene04612:CDS
CAAGCTGCACATCATCTATA+TGG 0.344546 7.3:-17568455 None:intergenic
TAATGGAAATCATGACTATA+TGG 0.366206 7.3:+17567291 MS.gene04612:CDS
AAACTTCCTGCTGAAATTGT+TGG 0.389210 7.3:-17567705 None:intergenic
TTGAGTGTGTGAATCGCCTT+GGG 0.396796 7.3:+17567820 MS.gene04612:CDS
GGAAGTTTATCAACTTCTCT+TGG 0.397953 7.3:+17567720 MS.gene04612:CDS
GTGTTAGACAGTTCAAAGTT+GGG 0.442345 7.3:-17567094 None:intergenic
ATAGATGATGTGCAGCTTGT+TGG 0.451741 7.3:+17568459 MS.gene04612:CDS
GTCTAACACTTTGCAAGCAT+TGG 0.457506 7.3:+17567108 MS.gene04612:CDS
GTTGAGTGTGTGAATCGCCT+TGG 0.458117 7.3:+17567819 MS.gene04612:CDS
AGTGTTAGACAGTTCAAAGT+TGG 0.458507 7.3:-17567095 None:intergenic
CAAGTAAAACAAGAATTAGA+TGG 0.463217 7.3:+17567772 MS.gene04612:CDS
TTGCAGTGGCTTTCAAATCA+AGG 0.468098 7.3:+17568632 MS.gene04612:intron
TAACTATCAAATTATGTGTT+CGG 0.471768 7.3:-17569109 None:intergenic
AAAAGCTATATTGAAGATGA+TGG 0.473225 7.3:+17567946 MS.gene04612:CDS
CCCTTAGAGATTGACACAAA+GGG 0.473466 7.3:-17567033 None:intergenic
AAGATTGATTATTATCAACT+TGG 0.481452 7.3:-17566973 None:intergenic
AACAAGAATTAGATGGACTA+AGG 0.489147 7.3:+17567779 MS.gene04612:CDS
TTGGTGAAATCTCAATTGAA+TGG 0.505462 7.3:+17567127 MS.gene04612:CDS
GTTCAAAGTTGGGGTCATGC+TGG 0.509873 7.3:-17567084 None:intergenic
CCCTTTGTGTCAATCTCTAA+GGG 0.510278 7.3:+17567033 MS.gene04612:CDS
CTTGGAAGCACTTCTTCTAG+TGG 0.515481 7.3:+17567738 MS.gene04612:CDS
AAAGATGTTTCTATTTCTGA+AGG 0.518549 7.3:+17569054 MS.gene04612:CDS
TTGTCTCCAACAATTTCAGC+AGG 0.521373 7.3:+17567699 MS.gene04612:CDS
AAATTACCTTGAGCTGACTC+TGG 0.535434 7.3:-17568037 None:intergenic
ATTGGAAAAGGCTTGCTCCC+AGG 0.542042 7.3:-17567205 None:intergenic
CAGAAGCTGGTGACTCGAAA+CGG 0.549320 7.3:-17566904 None:intergenic
AACATTACAATTGCGACTTG+AGG 0.551481 7.3:+17568927 MS.gene04612:CDS
TTGGAAGCACTTCTTCTAGT+GGG 0.558294 7.3:+17567739 MS.gene04612:CDS
TATGCAACAGAAAACTGCAT+GGG 0.559407 7.3:+17566932 MS.gene04612:CDS
ATCCGTTTGCAGGTTGCTCG+TGG 0.560326 7.3:+17567624 MS.gene04612:intron
TCCCTTAGAGATTGACACAA+AGG 0.575040 7.3:-17567034 None:intergenic
CTATCAAATTATGTGTTCGG+AGG 0.576552 7.3:-17569106 None:intergenic
TTATGCAACAGAAAACTGCA+TGG 0.589899 7.3:+17566931 MS.gene04612:CDS
TTGTATTTGGAGTATTGAAG+AGG 0.600647 7.3:-17569005 None:intergenic
TGTTAGACAGTTCAAAGTTG+GGG 0.605516 7.3:-17567093 None:intergenic
GCGTCTTCATGAACAACTAG+AGG 0.618964 7.3:+17568686 MS.gene04612:CDS
TTGAAGATGATGGACTCTGA+AGG 0.627815 7.3:+17567956 MS.gene04612:CDS
TTCATGCCAGAGTCAGCTCA+AGG 0.639842 7.3:+17568031 MS.gene04612:CDS
CAATTGCGACTTGAGGAACA+AGG 0.643962 7.3:+17568934 MS.gene04612:CDS
AACTTCAATTAGATGCACAA+AGG 0.668848 7.3:+17568664 MS.gene04612:CDS
TGATGAGCTGTTGCTAACTG+AGG 0.672832 7.3:-17567260 None:intergenic
GAGTGTGTGAATCGCCTTGG+GGG 0.715113 7.3:+17567822 MS.gene04612:CDS
TGAGTGTGTGAATCGCCTTG+GGG 0.716876 7.3:+17567821 MS.gene04612:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACCTTATTTTTATTTTATAT+GGG + chr7.3:17568844-17568863 MS.gene04612:intron 10.0%
!! AATGATGATACAAAAAATAT+TGG + chr7.3:17569030-17569049 MS.gene04612:CDS 15.0%
!! TCCCATATAAAATAAAAATA+AGG - chr7.3:17568848-17568867 None:intergenic 15.0%
!!! AAAATTTATTCAAGTTTTCA+TGG - chr7.3:17567171-17567190 None:intergenic 15.0%
!!! GACCTTATTTTTATTTTATA+TGG + chr7.3:17568843-17568862 MS.gene04612:intron 15.0%
!! AAGATTGATTATTATCAACT+TGG - chr7.3:17566976-17566995 None:intergenic 20.0%
!! AAGTTCATAAAGAAAATGAA+TGG - chr7.3:17568722-17568741 None:intergenic 20.0%
!! AGTATAAATATGTTATGACA+CGG - chr7.3:17567436-17567455 None:intergenic 20.0%
!! ATCATATAAGGTTAATGATT+TGG + chr7.3:17567006-17567025 MS.gene04612:CDS 20.0%
!! ATCATTAAAATCAGTTTGTA+AGG + chr7.3:17568788-17568807 MS.gene04612:intron 20.0%
!! ATGAAATTAATCAATCAACT+TGG - chr7.3:17568555-17568574 None:intergenic 20.0%
!! TTAGAGTCATATAACATATA+AGG - chr7.3:17568583-17568602 None:intergenic 20.0%
!!! AACTTGAATAAATTTTCATG+TGG + chr7.3:17567175-17567194 MS.gene04612:CDS 20.0%
!!! ACATTAGTTTGTTCAATATT+AGG - chr7.3:17568404-17568423 None:intergenic 20.0%
!!! ACTGATTTTAATGATGATTT+AGG - chr7.3:17568783-17568802 None:intergenic 20.0%
!!! ACTTGAATAAATTTTCATGT+GGG + chr7.3:17567176-17567195 MS.gene04612:CDS 20.0%
!!! TAAGAGTATAAAAGTAGTTT+AGG - chr7.3:17568515-17568534 None:intergenic 20.0%
! AAAAGCTATATTGAAGATGA+TGG + chr7.3:17567946-17567965 MS.gene04612:CDS 25.0%
! AAATTAATCAATCAACTTGG+TGG - chr7.3:17568552-17568571 None:intergenic 25.0%
! AAGGGAAAACAATCATTTAT+TGG + chr7.3:17567051-17567070 MS.gene04612:CDS 25.0%
! ACATTATTCACTATGAACAA+TGG - chr7.3:17568232-17568251 None:intergenic 25.0%
! ATAAATCATCGTATCACATT+AGG + chr7.3:17567568-17567587 MS.gene04612:intron 25.0%
! CAAGTAAAACAAGAATTAGA+TGG + chr7.3:17567772-17567791 MS.gene04612:CDS 25.0%
! CATTATTCACTATGAACAAT+GGG - chr7.3:17568231-17568250 None:intergenic 25.0%
! CTCAACATGAAAAATAAACT+AGG - chr7.3:17568105-17568124 None:intergenic 25.0%
! GAAAGAAAATAAGCACATTT+GGG - chr7.3:17568360-17568379 None:intergenic 25.0%
! TAAAATCAGTTTGTAAGGTA+AGG + chr7.3:17568793-17568812 MS.gene04612:intron 25.0%
! TAATGGAAATCATGACTATA+TGG + chr7.3:17567291-17567310 MS.gene04612:CDS 25.0%
! TGAAAGAAAATAAGCACATT+TGG - chr7.3:17568361-17568380 None:intergenic 25.0%
! TGAATAATGTCTGGTTAAAT+AGG + chr7.3:17568242-17568261 MS.gene04612:intron 25.0%
! TGTATTTATATCCACTAGAA+TGG + chr7.3:17568298-17568317 MS.gene04612:intron 25.0%
!! AGCTCATCATTTTGTAATAA+TGG + chr7.3:17567274-17567293 MS.gene04612:CDS 25.0%
!! ATCATCTTCAATATAGCTTT+TGG - chr7.3:17567947-17567966 None:intergenic 25.0%
!! ATGACTTTTCACATGAAATA+TGG - chr7.3:17567987-17568006 None:intergenic 25.0%
!! GTATCATCATTGATTGTATT+TGG - chr7.3:17569021-17569040 None:intergenic 25.0%
!! TATCTGATAGTCTTTTCTAT+TGG + chr7.3:17567899-17567918 MS.gene04612:intron 25.0%
!! TTTGAGTTCTCAATCATATA+AGG + chr7.3:17566994-17567013 MS.gene04612:CDS 25.0%
!! TTTGTTATAGTGTTTGTCAA+TGG + chr7.3:17568182-17568201 MS.gene04612:intron 25.0%
!!! AAAGATGTTTCTATTTCTGA+AGG + chr7.3:17569054-17569073 MS.gene04612:CDS 25.0%
!!! TAATCATGTTGTTACTTTCT+TGG + chr7.3:17568891-17568910 MS.gene04612:intron 25.0%
AAACTAATGTGTCCAATTTC+AGG + chr7.3:17568414-17568433 MS.gene04612:intron 30.0%
AACTAATGTGTCCAATTTCA+GGG + chr7.3:17568415-17568434 MS.gene04612:intron 30.0%
AACTTCAATTAGATGCACAA+AGG + chr7.3:17568664-17568683 MS.gene04612:CDS 30.0%
CATAAAGAAAATGAATGGCA+AGG - chr7.3:17568717-17568736 None:intergenic 30.0%
TATAGTGTTTGTCAATGGAT+AGG + chr7.3:17568187-17568206 MS.gene04612:intron 30.0%
TGTTCATAGTGAATAATGTC+TGG + chr7.3:17568233-17568252 MS.gene04612:intron 30.0%
TTGGTGAAATCTCAATTGAA+TGG + chr7.3:17567127-17567146 MS.gene04612:CDS 30.0%
TTTGCAAAATGATTCTTCTG+CGG + chr7.3:17567322-17567341 MS.gene04612:intron 30.0%
TTTGTCAATGGATAGGATAT+AGG + chr7.3:17568194-17568213 MS.gene04612:intron 30.0%
! TCAAGTTTTCATGGAATCTA+AGG - chr7.3:17567162-17567181 None:intergenic 30.0%
!! AACAAGAATTAGATGGACTA+AGG + chr7.3:17567779-17567798 MS.gene04612:CDS 30.0%
!! TATTGGTTTCTTGCTTATAG+AGG + chr7.3:17567916-17567935 MS.gene04612:intron 30.0%
!! TTGTATTTGGAGTATTGAAG+AGG - chr7.3:17569008-17569027 None:intergenic 30.0%
!!! AACAACTTTTGCTGTTCAAT+TGG - chr7.3:17567226-17567245 None:intergenic 30.0%
!!! TTTTGCTGTTCAATTGGAAA+AGG - chr7.3:17567220-17567239 None:intergenic 30.0%
AAACTTCCTGCTGAAATTGT+TGG - chr7.3:17567708-17567727 None:intergenic 35.0%
AACATTACAATTGCGACTTG+AGG + chr7.3:17568927-17568946 MS.gene04612:CDS 35.0%
AGTGTTAGACAGTTCAAAGT+TGG - chr7.3:17567098-17567117 None:intergenic 35.0%
CAGCAAAAGTTGTTCTTTGA+TGG + chr7.3:17567232-17567251 MS.gene04612:CDS 35.0%
GGAAGTTTATCAACTTCTCT+TGG + chr7.3:17567720-17567739 MS.gene04612:CDS 35.0%
GTGTTAGACAGTTCAAAGTT+GGG - chr7.3:17567097-17567116 None:intergenic 35.0%
TAATTATAGCATCCGTTTGC+AGG + chr7.3:17567614-17567633 MS.gene04612:intron 35.0%
TATGCAACAGAAAACTGCAT+GGG + chr7.3:17566932-17566951 MS.gene04612:CDS 35.0%
TCAAACTTCTACCATTCTAG+TGG - chr7.3:17568312-17568331 None:intergenic 35.0%
TGTTAGACAGTTCAAAGTTG+GGG - chr7.3:17567096-17567115 None:intergenic 35.0%
TTATGCAACAGAAAACTGCA+TGG + chr7.3:17566931-17566950 MS.gene04612:CDS 35.0%
TTGTCAGATTTCCCTGAAAT+TGG - chr7.3:17568429-17568448 None:intergenic 35.0%
! AATTATGTGTTCGGAGGTTT+TGG - chr7.3:17569103-17569122 None:intergenic 35.0%
! TTTCATGTGGGAATTTTCCT+GGG + chr7.3:17567188-17567207 MS.gene04612:CDS 35.0%
! TTTTCATGTGGGAATTTTCC+TGG + chr7.3:17567187-17567206 MS.gene04612:CDS 35.0%
AACGATCAAGATACTACTGG+AGG + chr7.3:17567388-17567407 MS.gene04612:intron 40.0%
ATAGATGATGTGCAGCTTGT+TGG + chr7.3:17568459-17568478 MS.gene04612:CDS 40.0%
CAAGCTGCACATCATCTATA+TGG - chr7.3:17568458-17568477 None:intergenic 40.0%
CCCTTAGAGATTGACACAAA+GGG - chr7.3:17567036-17567055 None:intergenic 40.0%
CCCTTTGTGTCAATCTCTAA+GGG + chr7.3:17567033-17567052 MS.gene04612:CDS 40.0%
GTCTAACACTTTGCAAGCAT+TGG + chr7.3:17567108-17567127 MS.gene04612:CDS 40.0%
GTTGCATAAAAAGCAGAAGC+TGG - chr7.3:17566920-17566939 None:intergenic 40.0%
TCCAACGATCAAGATACTAC+TGG + chr7.3:17567385-17567404 MS.gene04612:intron 40.0%
TCCAGTAGTATCTTGATCGT+TGG - chr7.3:17567389-17567408 None:intergenic 40.0%
TCCCTTAGAGATTGACACAA+AGG - chr7.3:17567037-17567056 None:intergenic 40.0%
TCCCTTTGTGTCAATCTCTA+AGG + chr7.3:17567032-17567051 MS.gene04612:CDS 40.0%
TTGAGAATCCTTGCATCTCA+CGG + chr7.3:17567459-17567478 MS.gene04612:intron 40.0%
TTGCAGTGGCTTTCAAATCA+AGG + chr7.3:17568632-17568651 MS.gene04612:intron 40.0%
TTGTCTCCAACAATTTCAGC+AGG + chr7.3:17567699-17567718 MS.gene04612:CDS 40.0%
! AAATTACCTTGAGCTGACTC+TGG - chr7.3:17568040-17568059 None:intergenic 40.0%
!! TTGAAGATGATGGACTCTGA+AGG + chr7.3:17567956-17567975 MS.gene04612:CDS 40.0%
!! TTGGAAGCACTTCTTCTAGT+GGG + chr7.3:17567739-17567758 MS.gene04612:CDS 40.0%
AAGCCACTGCAAATCAAGAG+TGG - chr7.3:17568624-17568643 None:intergenic 45.0%
CAATTGCGACTTGAGGAACA+AGG + chr7.3:17568934-17568953 MS.gene04612:CDS 45.0%
GATCAAGATACTACTGGAGG+TGG + chr7.3:17567391-17567410 MS.gene04612:intron 45.0%
GCGTCTTCATGAACAACTAG+AGG + chr7.3:17568686-17568705 MS.gene04612:CDS 45.0%
GTTATGACACGGATCCTCTT+CGG - chr7.3:17567425-17567444 None:intergenic 45.0%
TGAGAATCCTTGCATCTCAC+GGG + chr7.3:17567460-17567479 MS.gene04612:intron 45.0%
TGATGAGCTGTTGCTAACTG+AGG - chr7.3:17567263-17567282 None:intergenic 45.0%
TTGAGTGTGTGAATCGCCTT+GGG + chr7.3:17567820-17567839 MS.gene04612:CDS 45.0%
!! ACACCACTCTTGATTTGCAG+TGG + chr7.3:17568618-17568637 MS.gene04612:intron 45.0%
!! CTTGGAAGCACTTCTTCTAG+TGG + chr7.3:17567738-17567757 MS.gene04612:CDS 45.0%
!!! TGTGTTCGGAGGTTTTGGAT+TGG - chr7.3:17569098-17569117 None:intergenic 45.0%
ATCCACGAGCAACCTGCAAA+CGG - chr7.3:17567629-17567648 None:intergenic 50.0%
ATTGAACGACCAAGCTCTGC+TGG - chr7.3:17567362-17567381 None:intergenic 50.0%
CAAGATACTACTGGAGGTGG+TGG + chr7.3:17567394-17567413 MS.gene04612:intron 50.0%
CAGAAGCTGGTGACTCGAAA+CGG - chr7.3:17566907-17566926 None:intergenic 50.0%
GAGAATCCTTGCATCTCACG+GGG + chr7.3:17567461-17567480 MS.gene04612:intron 50.0%
GTTCAAAGTTGGGGTCATGC+TGG - chr7.3:17567087-17567106 None:intergenic 50.0%
GTTGAGTGTGTGAATCGCCT+TGG + chr7.3:17567819-17567838 MS.gene04612:CDS 50.0%
TGAGTGTGTGAATCGCCTTG+GGG + chr7.3:17567821-17567840 MS.gene04612:CDS 50.0%
TTCATGCCAGAGTCAGCTCA+AGG + chr7.3:17568031-17568050 MS.gene04612:CDS 50.0%
TTTCTTCCCCGTGAGATGCA+AGG - chr7.3:17567470-17567489 None:intergenic 50.0%
! ATTGGAAAAGGCTTGCTCCC+AGG - chr7.3:17567208-17567227 None:intergenic 50.0%
ACTTACTCTCAGCACCCCCA+AGG - chr7.3:17567839-17567858 None:intergenic 55.0%
ATCCGTTTGCAGGTTGCTCG+TGG + chr7.3:17567624-17567643 MS.gene04612:intron 55.0%
CTCTGCTGGAGAGGTAGAAG+AGG - chr7.3:17567348-17567367 None:intergenic 55.0%
GAGTGTGTGAATCGCCTTGG+GGG + chr7.3:17567822-17567841 MS.gene04612:CDS 55.0%
TCTACCTCTCCAGCAGAGCT+TGG + chr7.3:17567350-17567369 MS.gene04612:intron 55.0%
ACGACCAAGCTCTGCTGGAG+AGG - chr7.3:17567357-17567376 None:intergenic 60.0%
!! AGGTGGTGGAGAGACCGAAG+AGG + chr7.3:17567408-17567427 MS.gene04612:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 17566899 17569125 17566899 ID=MS.gene04612
chr7.3 mRNA 17566899 17569125 17566899 ID=MS.gene04612.t1;Parent=MS.gene04612
chr7.3 exon 17566899 17567312 17566899 ID=MS.gene04612.t1.exon1;Parent=MS.gene04612.t1
chr7.3 CDS 17566899 17567312 17566899 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
chr7.3 exon 17567636 17567852 17567636 ID=MS.gene04612.t1.exon2;Parent=MS.gene04612.t1
chr7.3 CDS 17567636 17567852 17567636 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
chr7.3 exon 17567936 17568052 17567936 ID=MS.gene04612.t1.exon3;Parent=MS.gene04612.t1
chr7.3 CDS 17567936 17568052 17567936 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
chr7.3 exon 17568436 17568490 17568436 ID=MS.gene04612.t1.exon4;Parent=MS.gene04612.t1
chr7.3 CDS 17568436 17568490 17568436 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
chr7.3 exon 17568638 17568707 17568638 ID=MS.gene04612.t1.exon5;Parent=MS.gene04612.t1
chr7.3 CDS 17568638 17568707 17568638 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
chr7.3 exon 17568919 17569125 17568919 ID=MS.gene04612.t1.exon6;Parent=MS.gene04612.t1
chr7.3 CDS 17568919 17569125 17568919 ID=cds.MS.gene04612.t1;Parent=MS.gene04612.t1
Gene Sequence

>MS.gene04612

ATGAGCCGTTTCGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAACTGCATGGGATTTGCAGAATTTGATCACCAAGTTGATAATAATCAATCTTTGAGTTCTCAATCATATAAGGTTAATGATTTGGAATTCCCTTTGTGTCAATCTCTAAGGGAAAACAATCATTTATTGGATGCATCAAACCAGCATGACCCCAACTTTGAACTGTCTAACACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCAACACCTTAGATTCCATGAAAACTTGAATAAATTTTCATGTGGGAATTTTCCTGGGAGCAAGCCTTTTCCAATTGAACAGCAAAAGTTGTTCTTTGATGGTCTTGCCTCAGTTAGCAACAGCTCATCATTTTGTAATAATGGAAATCATGACTATATGGTAAGTGATTTTGCAAAATGATTCTTCTGCGGCCTCTTCTACCTCTCCAGCAGAGCTTGGTCGTTCAATTAATCCAACGATCAAGATACTACTGGAGGTGGTGGAGAGACCGAAGAGGATCCGTGTCATAACATATTTATACTATATTGAGAATCCTTGCATCTCACGGGGAAGAAATCGTCGAAAGAATATATATATATTAGTTACGCTTTATACTTTTTTGTGTTCAATTATTGAGCATCAATAACATCTAACATAAATCATCGTATCACATTAGGCATACATCAATGAATCACATGTCTAATTATAGCATCCGTTTGCAGGTTGCTCGTGGATCTTATCATTTATCTGTTGAGCAACTGAACTTCTCTTCTCAGCATGAGAAGTTGTCTCCAACAATTTCAGCAGGAAGTTTATCAACTTCTCTTGGAAGCACTTCTTCTAGTGGGAATGTAGTCTCAAGTAAAACAAGAATTAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGCTGAGAGTAAGTATTGCTTTCAAAATTTGTCAATTCAAGAAACAAATGTTAATATCTGATAGTCTTTTCTATTGGTTTCTTGCTTATAGAGGCAACACCAAAAGCTATATTGAAGATGATGGACTCTGAAGGCTTGACCATATTTCATGTGAAAAGTCATTTGCAGAAATATAGAACTGCAAAATTCATGCCAGAGTCAGCTCAAGGTAATTTCTCTTTTTCTTTAGCATCATTGTAGACTTCTAGTGTAGTTTGCCTAGTTTATTTTTCATGTTGAGTATATTTTTTGTATTTTTGAATTTACTAGCATTCATGTCATAAGTGATAAGCAAATGTTTGTTATAGTGTTTGTCAATGGATAGGATATAGGTTTATCTTTTTCCCATTGTTCATAGTGAATAATGTCTGGTTAAATAGGCTTCAAATATAAGAAGTTGCAATGCAGAATAAATGTATTTATATCCACTAGAATGGTAGAAGTTTGAACTTCAATTATTCATAAACTATTGTCCCAAATGTGCTTATTTTCTTTCATATTATCTATCATATTGACTCCTAATATTGAACAAACTAATGTGTCCAATTTCAGGGAAATCTGACAAAAGAATCCATATAGATGATGTGCAGCTTGTTGGTGTTAAAACGTAATGCTATTTTTTCTTTTACCTAAACTACTTTTATACTCTTATGATTTTAGTATTTCCACCAAGTTGATTGATTAATTTCATATGAACCTTATATGTTATATGACTCTAAAAATCTACTAAATTTACACCACTCTTGATTTGCAGTGGCTTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTAGAGGTATATCCTTGCCATTCATTTTCTTTATGAACTTTGTTGAACTCTCATACTATATTGAATTTTTATATTGAACCTAAATCATCATTAAAATCAGTTTGTAAGGTAAGGATCGTCACTCGTTATAAACTCATTTCAGACCTTATTTTTATTTTATATGGGACTTACTTTTATCTAATACTTTTCTAATCATGTTGTTACTTTCTTGGTCTAGATTCAAAGAACATTACAATTGCGACTTGAGGAACAAGGCAGACAGCTGAAAAAAATGTTTGATCAGCAGCAGAAGACATGTAGTAACCTCTTCAATACTCCAAATACAATCAATGATGATACAAAAAATATTGGCAAAGATGTTTCTATTTCTGAAGGAGCTGAAAACTCTTTATTCCAATCCAAAACCTCCGAACACATAATTTGA
Protein sequence

>MS.gene04612.t1

MSRFESPASAFYATENCMGFAEFDHQVDNNQSLSSQSYKVNDLEFPLCQSLRENNHLLDASNQHDPNFELSNTLQALVKSQLNGNQHLRFHENLNKFSCGNFPGSKPFPIEQQKLFFDGLASVSNSSSFCNNGNHDYMVARGSYHLSVEQLNFSSQHEKLSPTISAGSLSTSLGSTSSSGNVVSSKTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMDSEGLTIFHVKSHLQKYRTAKFMPESAQGKSDKRIHIDDVQLVGVKTGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRLEEQGRQLKKMFDQQQKTCSNLFNTPNTINDDTKNIGKDVSISEGAENSLFQSKTSEHII