Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046126.t1 | RHN82753.1 | 72.4 | 228 | 27 | 3 | 10 | 202 | 8 | 234 | 1.60E-78 | 302.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046126.t1 | Q9SV30 | 77.0 | 74 | 17 | 0 | 120 | 193 | 228 | 301 | 2.6e-29 | 130.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046126.t1 | G7IF16 | 72.4 | 228 | 27 | 3 | 10 | 202 | 20 | 246 | 1.2e-78 | 302.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene046126.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046126.t1 | MTR_1g116010 | 72.368 | 228 | 27 | 3 | 10 | 202 | 20 | 246 | 1.93e-110 | 316 |
MS.gene046126.t1 | MTR_1g094930 | 49.612 | 258 | 60 | 10 | 12 | 201 | 74 | 329 | 7.23e-57 | 182 |
MS.gene046126.t1 | MTR_1g094930 | 47.009 | 234 | 56 | 8 | 35 | 201 | 2 | 234 | 1.10e-46 | 154 |
MS.gene046126.t1 | MTR_4g071590 | 41.451 | 193 | 92 | 5 | 10 | 202 | 119 | 290 | 4.76e-38 | 133 |
MS.gene046126.t1 | MTR_4g471590 | 41.451 | 193 | 92 | 5 | 10 | 202 | 119 | 290 | 4.76e-38 | 133 |
MS.gene046126.t1 | MTR_2g094600 | 45.665 | 173 | 64 | 5 | 36 | 192 | 129 | 287 | 8.60e-36 | 127 |
MS.gene046126.t1 | MTR_8g076340 | 44.022 | 184 | 95 | 5 | 16 | 196 | 113 | 291 | 2.50e-35 | 126 |
MS.gene046126.t1 | MTR_8g013950 | 40.415 | 193 | 85 | 5 | 11 | 185 | 110 | 290 | 3.91e-35 | 127 |
MS.gene046126.t1 | MTR_1g006650 | 40.838 | 191 | 89 | 6 | 16 | 185 | 111 | 298 | 3.95e-34 | 124 |
MS.gene046126.t1 | MTR_4g058910 | 76.923 | 65 | 15 | 0 | 121 | 185 | 314 | 378 | 4.81e-33 | 122 |
MS.gene046126.t1 | MTR_5g021340 | 39.091 | 220 | 96 | 7 | 11 | 196 | 158 | 373 | 2.64e-32 | 120 |
MS.gene046126.t1 | MTR_6g032830 | 73.134 | 67 | 18 | 0 | 120 | 186 | 191 | 257 | 3.79e-32 | 117 |
MS.gene046126.t1 | MTR_3g109760 | 41.053 | 190 | 88 | 6 | 11 | 185 | 91 | 271 | 4.84e-32 | 118 |
MS.gene046126.t1 | MTR_3g117380 | 40.223 | 179 | 101 | 2 | 11 | 185 | 117 | 293 | 5.53e-32 | 118 |
MS.gene046126.t1 | MTR_1g046680 | 70.000 | 70 | 21 | 0 | 116 | 185 | 167 | 236 | 6.84e-32 | 115 |
MS.gene046126.t1 | MTR_7g085410 | 69.565 | 69 | 21 | 0 | 118 | 186 | 185 | 253 | 3.30e-31 | 114 |
MS.gene046126.t1 | MTR_5g007600 | 64.865 | 74 | 26 | 0 | 116 | 189 | 254 | 327 | 5.15e-31 | 115 |
MS.gene046126.t1 | MTR_5g007600 | 63.768 | 69 | 25 | 0 | 116 | 184 | 152 | 220 | 9.15e-28 | 107 |
MS.gene046126.t1 | MTR_7g446110 | 61.290 | 62 | 24 | 0 | 121 | 182 | 187 | 248 | 2.26e-21 | 88.6 |
MS.gene046126.t1 | MTR_7g445980 | 62.712 | 59 | 21 | 1 | 125 | 182 | 37 | 95 | 1.39e-19 | 80.1 |
MS.gene046126.t1 | MTR_7g445950 | 51.515 | 66 | 32 | 0 | 117 | 182 | 116 | 181 | 1.73e-18 | 79.7 |
MS.gene046126.t1 | MTR_7g446070 | 32.402 | 179 | 88 | 6 | 15 | 182 | 37 | 193 | 4.69e-18 | 78.6 |
MS.gene046126.t1 | MTR_4g039780 | 70.149 | 67 | 20 | 0 | 30 | 96 | 13 | 79 | 3.82e-15 | 68.6 |
MS.gene046126.t1 | MTR_5g020230 | 46.296 | 54 | 29 | 0 | 100 | 153 | 101 | 154 | 3.05e-13 | 66.6 |
MS.gene046126.t1 | MTR_7g112330 | 56.522 | 46 | 19 | 1 | 114 | 158 | 14 | 59 | 8.22e-13 | 63.2 |
MS.gene046126.t1 | MTR_2g059300 | 77.419 | 31 | 7 | 0 | 114 | 144 | 24 | 54 | 2.83e-12 | 59.7 |
MS.gene046126.t1 | MTR_8g077510 | 61.111 | 36 | 14 | 0 | 118 | 153 | 122 | 157 | 1.02e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene046126.t1 | AT4G36240 | 41.209 | 182 | 90 | 3 | 11 | 191 | 69 | 234 | 2.94e-38 | 132 |
MS.gene046126.t1 | AT3G54810 | 79.167 | 72 | 15 | 0 | 120 | 191 | 228 | 299 | 2.51e-36 | 129 |
MS.gene046126.t1 | AT3G54810 | 79.167 | 72 | 15 | 0 | 120 | 191 | 228 | 299 | 2.51e-36 | 129 |
MS.gene046126.t1 | AT3G24050 | 60.825 | 97 | 32 | 1 | 99 | 195 | 178 | 268 | 8.34e-36 | 127 |
MS.gene046126.t1 | AT1G08010 | 70.513 | 78 | 20 | 1 | 115 | 192 | 214 | 288 | 1.58e-35 | 127 |
MS.gene046126.t1 | AT1G08010 | 70.513 | 78 | 20 | 1 | 115 | 192 | 214 | 288 | 1.58e-35 | 127 |
MS.gene046126.t1 | AT1G08010 | 70.513 | 78 | 20 | 1 | 115 | 192 | 214 | 288 | 1.58e-35 | 127 |
MS.gene046126.t1 | AT4G34680 | 40.838 | 191 | 73 | 6 | 12 | 195 | 97 | 254 | 1.87e-33 | 120 |
MS.gene046126.t1 | AT4G34680 | 40.838 | 191 | 73 | 6 | 12 | 195 | 97 | 254 | 1.87e-33 | 120 |
MS.gene046126.t1 | AT5G66320 | 37.004 | 227 | 102 | 7 | 10 | 199 | 107 | 329 | 3.10e-33 | 122 |
MS.gene046126.t1 | AT5G66320 | 37.004 | 227 | 102 | 7 | 10 | 199 | 107 | 329 | 3.10e-33 | 122 |
MS.gene046126.t1 | AT1G08000 | 51.181 | 127 | 54 | 3 | 66 | 185 | 157 | 282 | 1.39e-32 | 119 |
MS.gene046126.t1 | AT1G08000 | 51.181 | 127 | 54 | 3 | 66 | 185 | 157 | 282 | 1.39e-32 | 119 |
MS.gene046126.t1 | AT4G32890 | 38.298 | 188 | 102 | 4 | 11 | 185 | 75 | 261 | 4.95e-32 | 118 |
MS.gene046126.t1 | AT3G60530 | 40.314 | 191 | 84 | 7 | 11 | 199 | 72 | 234 | 8.60e-32 | 115 |
MS.gene046126.t1 | AT5G25830 | 40.777 | 206 | 82 | 7 | 16 | 185 | 82 | 283 | 2.73e-31 | 116 |
MS.gene046126.t1 | AT2G45050 | 39.691 | 194 | 86 | 6 | 11 | 189 | 74 | 251 | 3.28e-31 | 114 |
MS.gene046126.t1 | AT3G51080 | 66.667 | 75 | 23 | 1 | 121 | 195 | 221 | 293 | 5.92e-31 | 115 |
MS.gene046126.t1 | AT2G28340 | 67.606 | 71 | 20 | 1 | 123 | 193 | 193 | 260 | 4.93e-29 | 109 |
MS.gene046126.t1 | AT3G45170 | 41.667 | 120 | 70 | 0 | 70 | 189 | 64 | 183 | 1.93e-27 | 103 |
MS.gene046126.t1 | AT4G36620 | 58.333 | 36 | 15 | 0 | 118 | 153 | 72 | 107 | 1.34e-11 | 61.6 |
MS.gene046126.t1 | AT2G18380 | 60.000 | 35 | 14 | 0 | 119 | 153 | 90 | 124 | 6.45e-11 | 59.7 |
MS.gene046126.t1 | AT3G50870 | 58.333 | 36 | 15 | 0 | 118 | 153 | 149 | 184 | 7.14e-11 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGGTGAACTTATGCTTTC+AGG | 0.155842 | 1.1:-81602371 | None:intergenic |
CTAGCAACAGGCCGGTATTC+AGG | 0.202243 | 1.1:-81602692 | None:intergenic |
TTCTTTGAAGCACGAGTTTC+AGG | 0.203835 | 1.1:-81601350 | None:intergenic |
GGGAAATGACATTCTTTCAT+TGG | 0.338146 | 1.1:+81602244 | MS.gene046126:intron |
AAAAGAATCGTCCACAATAT+CGG | 0.373139 | 1.1:-81602276 | None:intergenic |
AGACGCAAGGATAATAATTC+TGG | 0.376327 | 1.1:+81602779 | MS.gene046126:CDS |
GTCTCATCACTCTCATTTCA+AGG | 0.395161 | 1.1:-81602760 | None:intergenic |
GAGTTTCAGGTTTGTATCAA+TGG | 0.419520 | 1.1:-81601337 | None:intergenic |
GAAAATGTTGGGCTAGCAAC+AGG | 0.436477 | 1.1:-81602704 | None:intergenic |
TAATTCTGGTATTCTCGCCT+TGG | 0.441508 | 1.1:+81602793 | MS.gene046126:CDS |
TAGCAACAGGCCGGTATTCA+GGG | 0.446393 | 1.1:-81602691 | None:intergenic |
TCTGCAATGCTTGCGGCGTT+CGG | 0.448102 | 1.1:+81602648 | MS.gene046126:CDS |
GCGCCTCTTCTTGCTGCTCC+AGG | 0.448261 | 1.1:+81602530 | MS.gene046126:CDS |
TGGGTGAACTTATGCTTTCA+GGG | 0.452416 | 1.1:-81602370 | None:intergenic |
CAATGGAGGTCAGGGCCAGA+GGG | 0.460506 | 1.1:+81602614 | MS.gene046126:CDS |
TGACCTCCATTGTGGTGTCT+TGG | 0.470363 | 1.1:-81602603 | None:intergenic |
TGCGGCGTTCGGTACAAGTC+AGG | 0.475560 | 1.1:+81602659 | MS.gene046126:CDS |
AAGACACCACAATGGAGGTC+AGG | 0.476853 | 1.1:+81602605 | MS.gene046126:CDS |
ATGACATTCTTTCATTGGAA+TGG | 0.478423 | 1.1:+81602249 | MS.gene046126:CDS |
ACCAAAGTATTATGATCTCC+TGG | 0.478922 | 1.1:-81602548 | None:intergenic |
GCCGACTTTGCCCTGAATAC+CGG | 0.496140 | 1.1:+81602681 | MS.gene046126:CDS |
ACAATGGAGGTCAGGGCCAG+AGG | 0.512229 | 1.1:+81602613 | MS.gene046126:CDS |
GCTCAACTTCTTTCAATGTG+AGG | 0.512743 | 1.1:-81602307 | None:intergenic |
TCCAGGAGATCATAATACTT+TGG | 0.514433 | 1.1:+81602547 | MS.gene046126:CDS |
GGTTGCAAGACGTGTACCCT+TGG | 0.515100 | 1.1:-81602426 | None:intergenic |
GAAGATCCGGAGAAAATGTT+GGG | 0.515937 | 1.1:-81602715 | None:intergenic |
GGTCTCTAGAGAAGAGGAAG+TGG | 0.524281 | 1.1:-81602486 | None:intergenic |
TGAGTTGCATGGTTGAATGA+TGG | 0.525185 | 1.1:-81602457 | None:intergenic |
TGTGAGTTAGAGTGAAGATC+CGG | 0.525870 | 1.1:-81602728 | None:intergenic |
TGAAGATCCGGAGAAAATGT+TGG | 0.538158 | 1.1:-81602716 | None:intergenic |
GAGTTGCATGGTTGAATGAT+GGG | 0.547753 | 1.1:-81602456 | None:intergenic |
TCCTTGTTCACTGACGATGA+TGG | 0.555427 | 1.1:-81602335 | None:intergenic |
CTCCCTTCACACGTATTCCA+AGG | 0.557994 | 1.1:-81602810 | None:intergenic |
ACCATCATCGTCAGTGAACA+AGG | 0.562264 | 1.1:+81602334 | MS.gene046126:CDS |
CTTCTTGGTCTCTAGAGAAG+AGG | 0.563016 | 1.1:-81602492 | None:intergenic |
GGAATGGCAGTCCGATATTG+TGG | 0.569142 | 1.1:+81602265 | MS.gene046126:CDS |
GTCTCTAGAGAAGAGGAAGT+GGG | 0.570792 | 1.1:-81602485 | None:intergenic |
TCGCCTTGGAATACGTGTGA+AGG | 0.571882 | 1.1:+81602807 | MS.gene046126:CDS |
TCTGGCCCTGACCTCCATTG+TGG | 0.574213 | 1.1:-81602611 | None:intergenic |
GCCGGTATTCAGGGCAAAGT+CGG | 0.582975 | 1.1:-81602682 | None:intergenic |
AGTGAGACGTACACGCTCCA+AGG | 0.586541 | 1.1:+81602409 | MS.gene046126:CDS |
AGACACCACAATGGAGGTCA+GGG | 0.625833 | 1.1:+81602606 | MS.gene046126:CDS |
ATGTTGGGCTAGCAACAGGC+CGG | 0.635385 | 1.1:-81602700 | None:intergenic |
GTGAGACGTACACGCTCCAA+GGG | 0.642639 | 1.1:+81602410 | MS.gene046126:CDS |
TCTCCTGGAGCAGCAAGAAG+AGG | 0.648108 | 1.1:-81602533 | None:intergenic |
AAAACACTCTGCAATGCTTG+CGG | 0.650171 | 1.1:+81602641 | MS.gene046126:CDS |
AGTTGCATGGTTGAATGATG+GGG | 0.654848 | 1.1:-81602455 | None:intergenic |
AATGGAGGTCAGGGCCAGAG+GGG | 0.656879 | 1.1:+81602615 | MS.gene046126:CDS |
CGACCAAGACACCACAATGG+AGG | 0.657049 | 1.1:+81602600 | MS.gene046126:CDS |
AATGAGAGTGATGAGACGCA+AGG | 0.663400 | 1.1:+81602766 | MS.gene046126:CDS |
AGTGGGAGAAATGAGTTGCA+TGG | 0.665035 | 1.1:-81602468 | None:intergenic |
AGGCGACCAAGACACCACAA+TGG | 0.710774 | 1.1:+81602597 | MS.gene046126:CDS |
GAAGAAATGCATGCATTGTG+AGG | 0.712899 | 1.1:+81602577 | MS.gene046126:CDS |
GTTGCATGGTTGAATGATGG+GGG | 0.728694 | 1.1:-81602454 | None:intergenic |
GGAGCGTGTACGTCTCACTG+TGG | 0.764287 | 1.1:-81602405 | None:intergenic |
ATCATCGTCAGTGAACAAGG+AGG | 0.776115 | 1.1:+81602337 | MS.gene046126:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCAATTACTATTAAAATGA+AGG | + | chr1.1:81601810-81601829 | MS.gene046126:intron | 15.0% |
!! | CAGGAAAAAAAAAAAAAAAA+AGG | - | chr1.1:81601522-81601541 | None:intergenic | 15.0% |
!! | TCAATTACTATTAAAATGAA+GGG | + | chr1.1:81601811-81601830 | MS.gene046126:intron | 15.0% |
!!! | TGATGATATTTATTGATTTA+CGG | - | chr1.1:81602041-81602060 | None:intergenic | 15.0% |
!!! | TTCATTTTAATAGTAATTGA+TGG | - | chr1.1:81601811-81601830 | None:intergenic | 15.0% |
!! | ATTCCCAAAAATCAAAATTA+GGG | - | chr1.1:81601601-81601620 | None:intergenic | 20.0% |
!! | TAACTCTAAATAGTTATTCT+TGG | + | chr1.1:81601847-81601866 | MS.gene046126:intron | 20.0% |
!! | TATTAAAACTAACAAAGCTT+AGG | - | chr1.1:81602189-81602208 | None:intergenic | 20.0% |
!! | TCACGATAATTGAATATATT+AGG | + | chr1.1:81601373-81601392 | MS.gene046126:intron | 20.0% |
!!! | AAACCCTAATTTTGATTTTT+GGG | + | chr1.1:81601595-81601614 | MS.gene046126:intron | 20.0% |
!!! | CTACAAAGATTTTTTGTAAA+TGG | - | chr1.1:81601905-81601924 | None:intergenic | 20.0% |
!!! | GATTTTTACGTTTTCAATAT+AGG | + | chr1.1:81601484-81601503 | MS.gene046126:intron | 20.0% |
!!! | TAAACCCTAATTTTGATTTT+TGG | + | chr1.1:81601594-81601613 | MS.gene046126:intron | 20.0% |
! | ATTTCCCTGTAATAATAACA+AGG | - | chr1.1:81602231-81602250 | None:intergenic | 25.0% |
! | CAAGAAGAAAAAGAAAACAA+AGG | + | chr1.1:81602508-81602527 | MS.gene046126:CDS | 25.0% |
! | CATTCCCAAAAATCAAAATT+AGG | - | chr1.1:81601602-81601621 | None:intergenic | 25.0% |
! | TACAAAGACGATTGAAAAAT+TGG | + | chr1.1:81601729-81601748 | MS.gene046126:intron | 25.0% |
!!! | ATCAACCTTGTTATTATTAC+AGG | + | chr1.1:81602223-81602242 | MS.gene046126:intron | 25.0% |
!!! | ATTTGTTAAGCCTAGTTTTA+TGG | - | chr1.1:81602150-81602169 | None:intergenic | 25.0% |
!!! | CTTTGTTTTCTTTTTCTTCT+TGG | - | chr1.1:81602510-81602529 | None:intergenic | 25.0% |
!!! | TCAACCTTGTTATTATTACA+GGG | + | chr1.1:81602224-81602243 | MS.gene046126:intron | 25.0% |
AAAAGAATCGTCCACAATAT+CGG | - | chr1.1:81602279-81602298 | None:intergenic | 30.0% | |
ATACACAAGATCAAAGATGA+AGG | + | chr1.1:81601753-81601772 | MS.gene046126:intron | 30.0% | |
ATGACATTCTTTCATTGGAA+TGG | + | chr1.1:81602249-81602268 | MS.gene046126:CDS | 30.0% | |
CTTCTAGTATAATTCAACGA+TGG | - | chr1.1:81601944-81601963 | None:intergenic | 30.0% | |
GAATCAATAAATCGCATCAT+GGG | - | chr1.1:81602077-81602096 | None:intergenic | 30.0% | |
TAAAATGAAGGGACATGATT+TGG | + | chr1.1:81601822-81601841 | MS.gene046126:intron | 30.0% | |
TATTTGTGCACCATAAAACT+AGG | + | chr1.1:81602137-81602156 | MS.gene046126:intron | 30.0% | |
TGAATCAATAAATCGCATCA+TGG | - | chr1.1:81602078-81602097 | None:intergenic | 30.0% | |
! | GGTAAATACTTCTAAGAGAA+GGG | - | chr1.1:81601884-81601903 | None:intergenic | 30.0% |
! | TGGTAAATACTTCTAAGAGA+AGG | - | chr1.1:81601885-81601904 | None:intergenic | 30.0% |
!! | GATGCGATTTATTGATTCAA+TGG | + | chr1.1:81602079-81602098 | MS.gene046126:intron | 30.0% |
AGAAACATCATTACTGTCCA+AGG | + | chr1.1:81601641-81601660 | MS.gene046126:intron | 35.0% | |
AGACGCAAGGATAATAATTC+TGG | + | chr1.1:81602779-81602798 | MS.gene046126:CDS | 35.0% | |
GGGAAATGACATTCTTTCAT+TGG | + | chr1.1:81602244-81602263 | MS.gene046126:intron | 35.0% | |
GTAATGATGTTTCTTCTCTG+TGG | - | chr1.1:81601635-81601654 | None:intergenic | 35.0% | |
TCCAGGAGATCATAATACTT+TGG | + | chr1.1:81602547-81602566 | MS.gene046126:CDS | 35.0% | |
! | ACCAAAGTATTATGATCTCC+TGG | - | chr1.1:81602551-81602570 | None:intergenic | 35.0% |
! | ACTGTGGTATTTTCACAAGT+GGG | - | chr1.1:81602392-81602411 | None:intergenic | 35.0% |
! | TCTTGATGCAGCTTTTGTAA+TGG | - | chr1.1:81601562-81601581 | None:intergenic | 35.0% |
!! | GAGTTTCAGGTTTGTATCAA+TGG | - | chr1.1:81601340-81601359 | None:intergenic | 35.0% |
!!! | TTTTGTCCTCTTTAGAACCT+TGG | - | chr1.1:81601661-81601680 | None:intergenic | 35.0% |
AAAACACTCTGCAATGCTTG+CGG | + | chr1.1:81602641-81602660 | MS.gene046126:CDS | 40.0% | |
AAGAAGACAAGAGTAGTAGC+AGG | - | chr1.1:81601425-81601444 | None:intergenic | 40.0% | |
AGTTGCATGGTTGAATGATG+GGG | - | chr1.1:81602458-81602477 | None:intergenic | 40.0% | |
GAAGAAATGCATGCATTGTG+AGG | + | chr1.1:81602577-81602596 | MS.gene046126:CDS | 40.0% | |
GAAGATCCGGAGAAAATGTT+GGG | - | chr1.1:81602718-81602737 | None:intergenic | 40.0% | |
GAGTTGCATGGTTGAATGAT+GGG | - | chr1.1:81602459-81602478 | None:intergenic | 40.0% | |
GCTCAACTTCTTTCAATGTG+AGG | - | chr1.1:81602310-81602329 | None:intergenic | 40.0% | |
GTCTCATCACTCTCATTTCA+AGG | - | chr1.1:81602763-81602782 | None:intergenic | 40.0% | |
TAATTCTGGTATTCTCGCCT+TGG | + | chr1.1:81602793-81602812 | MS.gene046126:CDS | 40.0% | |
TGAAGATCCGGAGAAAATGT+TGG | - | chr1.1:81602719-81602738 | None:intergenic | 40.0% | |
TGAGTTGCATGGTTGAATGA+TGG | - | chr1.1:81602460-81602479 | None:intergenic | 40.0% | |
TGGGTGAACTTATGCTTTCA+GGG | - | chr1.1:81602373-81602392 | None:intergenic | 40.0% | |
TGTGAGTTAGAGTGAAGATC+CGG | - | chr1.1:81602731-81602750 | None:intergenic | 40.0% | |
! | CACTGTGGTATTTTCACAAG+TGG | - | chr1.1:81602393-81602412 | None:intergenic | 40.0% |
!! | CAAGCATTGCAGAGTGTTTT+CGG | - | chr1.1:81602641-81602660 | None:intergenic | 40.0% |
!! | TACTGTCCAAGGTTCTAAAG+AGG | + | chr1.1:81601652-81601671 | MS.gene046126:intron | 40.0% |
!! | TTCTTTGAAGCACGAGTTTC+AGG | - | chr1.1:81601353-81601372 | None:intergenic | 40.0% |
AATGAGAGTGATGAGACGCA+AGG | + | chr1.1:81602766-81602785 | MS.gene046126:CDS | 45.0% | |
ACCATCATCGTCAGTGAACA+AGG | + | chr1.1:81602334-81602353 | MS.gene046126:CDS | 45.0% | |
AGTGGGAGAAATGAGTTGCA+TGG | - | chr1.1:81602471-81602490 | None:intergenic | 45.0% | |
ATCATCGTCAGTGAACAAGG+AGG | + | chr1.1:81602337-81602356 | MS.gene046126:CDS | 45.0% | |
GATGAAAAATCACACACGCG+CGG | - | chr1.1:81602019-81602038 | None:intergenic | 45.0% | |
GGCAGACAACACAAGATATC+AGG | - | chr1.1:81601541-81601560 | None:intergenic | 45.0% | |
GTGGGTGAACTTATGCTTTC+AGG | - | chr1.1:81602374-81602393 | None:intergenic | 45.0% | |
GTTGCATGGTTGAATGATGG+GGG | - | chr1.1:81602457-81602476 | None:intergenic | 45.0% | |
TCCTTGTTCACTGACGATGA+TGG | - | chr1.1:81602338-81602357 | None:intergenic | 45.0% | |
! | CTTCTTGGTCTCTAGAGAAG+AGG | - | chr1.1:81602495-81602514 | None:intergenic | 45.0% |
! | GTCTCTAGAGAAGAGGAAGT+GGG | - | chr1.1:81602488-81602507 | None:intergenic | 45.0% |
! | TGCTAGCCCAACATTTTCTC+CGG | + | chr1.1:81602709-81602728 | MS.gene046126:CDS | 45.0% |
!! | GAAAATGTTGGGCTAGCAAC+AGG | - | chr1.1:81602707-81602726 | None:intergenic | 45.0% |
AAGACACCACAATGGAGGTC+AGG | + | chr1.1:81602605-81602624 | MS.gene046126:CDS | 50.0% | |
AGACACCACAATGGAGGTCA+GGG | + | chr1.1:81602606-81602625 | MS.gene046126:CDS | 50.0% | |
GGAATGGCAGTCCGATATTG+TGG | + | chr1.1:81602265-81602284 | MS.gene046126:CDS | 50.0% | |
TAGCAACAGGCCGGTATTCA+GGG | - | chr1.1:81602694-81602713 | None:intergenic | 50.0% | |
TGACCTCCATTGTGGTGTCT+TGG | - | chr1.1:81602606-81602625 | None:intergenic | 50.0% | |
! | GGTCTCTAGAGAAGAGGAAG+TGG | - | chr1.1:81602489-81602508 | None:intergenic | 50.0% |
AGGCGACCAAGACACCACAA+TGG | + | chr1.1:81602597-81602616 | MS.gene046126:CDS | 55.0% | |
AGTGAGACGTACACGCTCCA+AGG | + | chr1.1:81602409-81602428 | MS.gene046126:CDS | 55.0% | |
CGACCAAGACACCACAATGG+AGG | + | chr1.1:81602600-81602619 | MS.gene046126:CDS | 55.0% | |
CTAGCAACAGGCCGGTATTC+AGG | - | chr1.1:81602695-81602714 | None:intergenic | 55.0% | |
GCCGGTATTCAGGGCAAAGT+CGG | - | chr1.1:81602685-81602704 | None:intergenic | 55.0% | |
GGTTGCAAGACGTGTACCCT+TGG | - | chr1.1:81602429-81602448 | None:intergenic | 55.0% | |
GTGAGACGTACACGCTCCAA+GGG | + | chr1.1:81602410-81602429 | MS.gene046126:CDS | 55.0% | |
TCTCCTGGAGCAGCAAGAAG+AGG | - | chr1.1:81602536-81602555 | None:intergenic | 55.0% | |
TCTGCAATGCTTGCGGCGTT+CGG | + | chr1.1:81602648-81602667 | MS.gene046126:CDS | 55.0% | |
! | GCCGACTTTGCCCTGAATAC+CGG | + | chr1.1:81602681-81602700 | MS.gene046126:CDS | 55.0% |
! | GGTTGAATGATGGGGGCTGA+AGG | - | chr1.1:81602450-81602469 | None:intergenic | 55.0% |
!! | ATGTTGGGCTAGCAACAGGC+CGG | - | chr1.1:81602703-81602722 | None:intergenic | 55.0% |
AATGGAGGTCAGGGCCAGAG+GGG | + | chr1.1:81602615-81602634 | MS.gene046126:CDS | 60.0% | |
ACAATGGAGGTCAGGGCCAG+AGG | + | chr1.1:81602613-81602632 | MS.gene046126:CDS | 60.0% | |
CAATGGAGGTCAGGGCCAGA+GGG | + | chr1.1:81602614-81602633 | MS.gene046126:CDS | 60.0% | |
GGAGCGTGTACGTCTCACTG+TGG | - | chr1.1:81602408-81602427 | None:intergenic | 60.0% | |
TCTGGCCCTGACCTCCATTG+TGG | - | chr1.1:81602614-81602633 | None:intergenic | 60.0% | |
TGCGGCGTTCGGTACAAGTC+AGG | + | chr1.1:81602659-81602678 | MS.gene046126:CDS | 60.0% | |
!! | CAGAGTGTTTTCGGCCCCTC+TGG | - | chr1.1:81602632-81602651 | None:intergenic | 60.0% |
GCGCCTCTTCTTGCTGCTCC+AGG | + | chr1.1:81602530-81602549 | MS.gene046126:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 81601333 | 81602826 | 81601333 | ID=MS.gene046126 |
chr1.1 | mRNA | 81601333 | 81602826 | 81601333 | ID=MS.gene046126.t1;Parent=MS.gene046126 |
chr1.1 | exon | 81601333 | 81601359 | 81601333 | ID=MS.gene046126.t1.exon1;Parent=MS.gene046126.t1 |
chr1.1 | CDS | 81601333 | 81601359 | 81601333 | ID=cds.MS.gene046126.t1;Parent=MS.gene046126.t1 |
chr1.1 | exon | 81602245 | 81602826 | 81602245 | ID=MS.gene046126.t1.exon2;Parent=MS.gene046126.t1 |
chr1.1 | CDS | 81602245 | 81602826 | 81602245 | ID=cds.MS.gene046126.t1;Parent=MS.gene046126.t1 |
Gene Sequence |
Protein sequence |