AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046170.t1 MTR_1g116940 94.553 257 14 0 15 271 2 258 2.33e-168 466
MS.gene046170.t1 MTR_7g093130 57.303 267 93 8 15 268 43 301 3.71e-94 280
MS.gene046170.t1 MTR_1g053960 57.364 258 98 6 19 271 43 293 1.18e-93 278
MS.gene046170.t1 MTR_1g053960 55.556 234 92 6 43 271 1 227 1.75e-77 234
MS.gene046170.t1 MTR_7g093130 55.230 239 86 8 43 268 1 231 1.23e-76 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046170.t1 AT3G12130 41.132 265 86 6 15 271 45 247 6.32e-52 170
MS.gene046170.t1 AT5G06770 43.750 208 102 5 74 271 15 217 2.90e-47 157
MS.gene046170.t1 AT5G06770 43.750 208 102 5 74 271 37 239 9.34e-47 156
MS.gene046170.t1 AT5G06770 43.500 200 98 5 82 271 18 212 3.50e-44 149
MS.gene046170.t1 AT5G06770 43.500 200 98 5 82 271 18 212 3.50e-44 149
MS.gene046170.t1 AT5G06770 43.500 200 98 5 82 271 18 212 3.50e-44 149
MS.gene046170.t1 AT3G12130 51.634 153 63 2 127 271 26 175 2.87e-43 145
MS.gene046170.t1 AT5G06770 51.449 138 66 1 134 271 31 167 6.50e-43 144

Find 92 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGAGCTGCTGCCGGTTT+TGG 0.155815 1.3:-79520588 MS.gene046170:CDS
ACAGCTGAAGGTCGCAAATT+TGG 0.185089 1.3:-79520744 MS.gene046170:CDS
ACCAAAGGATCCTGCACTTT+TGG 0.214083 1.3:-79520255 MS.gene046170:CDS
CATTTCCTGCATTATGTTCC+TGG 0.223580 1.3:-79520912 MS.gene046170:CDS
CAGCTGAAGGTCGCAAATTT+GGG 0.254177 1.3:-79520743 MS.gene046170:CDS
TTGGTCTTGAAGTTGTTTGC+AGG 0.265962 1.3:+79520294 None:intergenic
CTTCAAGCTCAATATTTCTA+AGG 0.277040 1.3:+79520427 None:intergenic
TAAAATTTCTATCACATTCC+AGG 0.312719 1.3:+79520189 None:intergenic
CAGGTGCTAAACTTTCCATT+AGG 0.322304 1.3:-79520470 MS.gene046170:CDS
GGGAAGGATGGTGGAACATT+TGG 0.327695 1.3:+79520819 None:intergenic
TATTGAACTTGTTGCACAAC+CGG 0.331191 1.3:+79520766 None:intergenic
GCAGCTCCATGAGCTGGAGG+TGG 0.349271 1.3:+79520600 None:intergenic
CCCAAAAGTGCAGGATCCTT+TGG 0.352380 1.3:+79520254 None:intergenic
ATTTCCTGCATTATGTTCCT+GGG 0.362562 1.3:-79520911 MS.gene046170:CDS
GCTCCATGAGCTGGAGGTGG+GGG 0.369225 1.3:+79520603 None:intergenic
CTTAGAAATATTGAGCTTGA+AGG 0.380840 1.3:-79520426 MS.gene046170:CDS
GTTACACCCCTGCACTCATC+TGG 0.391359 1.3:-79521094 MS.gene046170:intron
AGCTCCATGAGCTGGAGGTG+GGG 0.391671 1.3:+79520602 None:intergenic
CCGAACTCACATTTAGAATA+AGG 0.392968 1.3:+79520361 None:intergenic
AAGCAAATCTATCACATAAC+AGG 0.395520 1.3:-79520489 MS.gene046170:CDS
AGGTGCTAAACTTTCCATTA+GGG 0.399844 1.3:-79520469 MS.gene046170:CDS
ACATTTGGATTTCTACCAAT+TGG 0.402070 1.3:+79520834 None:intergenic
ATGGTGAGTGGGAGCGTGGC+AGG 0.408893 1.3:-79520701 MS.gene046170:CDS
CATCTATTATGCAGCACCTC+TGG 0.411921 1.3:-79520957 MS.gene046170:intron
ATCTGAGTCATGTTCCCTAA+TGG 0.413569 1.3:+79520455 None:intergenic
CAGGAACATAATGCAGGAAA+TGG 0.419367 1.3:+79520913 None:intergenic
CTAAATGTGAGTTCGGTCTC+TGG 0.419817 1.3:-79520354 MS.gene046170:CDS
CAGCTCCATGAGCTGGAGGT+GGG 0.423034 1.3:+79520601 None:intergenic
CACAACCGGGTCTTAGCAAC+TGG 0.431622 1.3:+79520780 None:intergenic
GCTGCTTTGCATTTGTCCCA+TGG 0.442232 1.3:+79520647 None:intergenic
ATGCAAAGCAGCAGTGTTGA+TGG 0.443234 1.3:-79520636 MS.gene046170:CDS
CTACCAATTGGTGGAATAGC+AGG 0.443500 1.3:+79520846 None:intergenic
CCAGCTCATGGAGCTGCTGC+CGG 0.447956 1.3:-79520594 MS.gene046170:CDS
CCGGCAGCAGCTCCATGAGC+TGG 0.455038 1.3:+79520594 None:intergenic
CCTTATTCTAAATGTGAGTT+CGG 0.456926 1.3:-79520361 MS.gene046170:CDS
AGCACCTCTGGATGTCCATT+TGG 0.459036 1.3:-79520945 MS.gene046170:CDS
AGCTCAATATTTCTAAGGTT+AGG 0.469832 1.3:+79520432 None:intergenic
AGTGGCCGACACTCCAAAAC+CGG 0.472552 1.3:+79520575 None:intergenic
AAATGGCATCCCTCGCCAAA+TGG 0.473103 1.3:+79520930 None:intergenic
AGTCCTGCTATTCCACCAAT+TGG 0.476108 1.3:-79520849 MS.gene046170:CDS
AGTTCGGTCTCTGGACCTCC+AGG 0.487466 1.3:-79520345 MS.gene046170:CDS
TGGTCTTGAAGTTGTTTGCA+GGG 0.488541 1.3:+79520295 None:intergenic
AAGGTCATGGACCATGGCAC+TGG 0.492421 1.3:+79520380 None:intergenic
GCGCGAGTATCTTCATATGC+AGG 0.492758 1.3:+79520669 None:intergenic
ACCCTTGCTAGAGCTATCAT+TGG 0.494785 1.3:-79520531 MS.gene046170:CDS
ACTGGTGGAGAAGAACCGTC+TGG 0.507265 1.3:+79520798 None:intergenic
GATGGAAACCAGATGAGTGC+AGG 0.514214 1.3:+79521086 None:intergenic
CTCCACCAGTTGCTAAGACC+CGG 0.514232 1.3:-79520785 MS.gene046170:CDS
TTTGGATTTCTACCAATTGG+TGG 0.514454 1.3:+79520837 None:intergenic
ACAGATGAATTATGCAAGCC+TGG 0.520202 1.3:-79520207 MS.gene046170:CDS
GCCACGCTCCCACTCACCAT+GGG 0.523824 1.3:+79520704 None:intergenic
TTCCAATGATAGCTCTAGCA+AGG 0.524282 1.3:+79520529 None:intergenic
GCACCTTTCCCCAAAAGTGC+AGG 0.529864 1.3:+79520245 None:intergenic
CTCTGGATGTCCATTTGGCG+AGG 0.529886 1.3:-79520940 MS.gene046170:CDS
GAAAGGTGCCACTTCGCGCA+TGG 0.536523 1.3:-79520231 MS.gene046170:CDS
TGCCACGCTCCCACTCACCA+TGG 0.538201 1.3:+79520703 None:intergenic
TTTCCTGCATTATGTTCCTG+GGG 0.549338 1.3:-79520910 MS.gene046170:CDS
GTGGGAGCGTGGCAGGCCCA+CGG 0.551387 1.3:-79520694 MS.gene046170:CDS
ATTGAACTTGTTGCACAACC+GGG 0.554392 1.3:+79520767 None:intergenic
TGTTATGTGATAGATTTGCT+TGG 0.557591 1.3:+79520491 None:intergenic
TATGAAGATACTCGCGCCAT+GGG 0.559467 1.3:-79520663 MS.gene046170:CDS
TGCAAAGCAGCAGTGTTGAT+GGG 0.562545 1.3:-79520635 MS.gene046170:CDS
CATCTGTTCCATGCGCGAAG+TGG 0.569090 1.3:+79520223 None:intergenic
CGCGAGTATCTTCATATGCA+GGG 0.573206 1.3:+79520670 None:intergenic
GAAGAACCGTCTGGGAAGGA+TGG 0.574755 1.3:+79520807 None:intergenic
ATATGAAGATACTCGCGCCA+TGG 0.580726 1.3:-79520664 MS.gene046170:CDS
TCTTCATATGCAGGGACCGT+GGG 0.587144 1.3:+79520678 None:intergenic
GAACCGTCTGGGAAGGATGG+TGG 0.589119 1.3:+79520810 None:intergenic
GTCACTTTGCCCATGGTGAG+TGG 0.600587 1.3:-79520713 MS.gene046170:CDS
GCCCATGGTGAGTGGGAGCG+TGG 0.601228 1.3:-79520705 MS.gene046170:CDS
TTCCTGCATTATGTTCCTGG+GGG 0.602347 1.3:-79520909 MS.gene046170:CDS
TAGAATAAGGTCATGGACCA+TGG 0.602580 1.3:+79520374 None:intergenic
TCCAATGATAGCTCTAGCAA+GGG 0.603096 1.3:+79520530 None:intergenic
TCTGGATGTCCATTTGGCGA+GGG 0.603444 1.3:-79520939 MS.gene046170:CDS
TGGAGAAGAACCGTCTGGGA+AGG 0.604602 1.3:+79520803 None:intergenic
AACAAGTTCAATACAGCTGA+AGG 0.604829 1.3:-79520756 MS.gene046170:CDS
GTCTCTCAGATGATCAATGT+CGG 0.614302 1.3:-79520876 MS.gene046170:CDS
AACCGGGTCTTAGCAACTGG+TGG 0.615487 1.3:+79520783 None:intergenic
CTGTGTGAAAACTTTACCAA+AGG 0.618887 1.3:-79520270 MS.gene046170:CDS
GGTCTTGAAGTTGTTTGCAG+GGG 0.621193 1.3:+79520296 None:intergenic
TCACTTTGCCCATGGTGAGT+GGG 0.626927 1.3:-79520712 MS.gene046170:CDS
CTCGCCAAATGGACATCCAG+AGG 0.627517 1.3:+79520941 None:intergenic
TCACATTTAGAATAAGGTCA+TGG 0.629476 1.3:+79520367 None:intergenic
CTGGTGGAGAAGAACCGTCT+GGG 0.629582 1.3:+79520799 None:intergenic
GATCAAACAAGCCAGTGCCA+TGG 0.633360 1.3:-79520391 MS.gene046170:CDS
ATCTTCATATGCAGGGACCG+TGG 0.634772 1.3:+79520677 None:intergenic
ATGGAAACCAGATGAGTGCA+GGG 0.640692 1.3:+79521087 None:intergenic
GTTCCACCATCCTTCCCAGA+CGG 0.641586 1.3:-79520813 MS.gene046170:CDS
GCAGCAGCTCCATGAGCTGG+AGG 0.660051 1.3:+79520597 None:intergenic
AGCTGAAGGTCGCAAATTTG+GGG 0.668544 1.3:-79520742 MS.gene046170:CDS
GATAAATGTCACTTTGCCCA+TGG 0.676321 1.3:-79520720 MS.gene046170:CDS
TGGAAACCAGATGAGTGCAG+GGG 0.780882 1.3:+79521088 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAGTAAATATTTGAA+TGG + chr1.3:79520294-79520313 None:intergenic 10.0%
!!! AAATCATTTTTACAGTTTGA+TGG + chr1.3:79520257-79520276 None:intergenic 20.0%
!!! ATTAATATTAACTTTTGCAG+TGG + chr1.3:79520768-79520787 None:intergenic 20.0%
!!! AATTTTTTAGTCTGAACAGA+TGG - chr1.3:79520308-79520327 MS.gene046170:CDS 25.0%
AAGCAAATCTATCACATAAC+AGG - chr1.3:79520833-79520852 MS.gene046170:CDS 30.0%
ACATTTGGATTTCTACCAAT+TGG + chr1.3:79520491-79520510 None:intergenic 30.0%
AGAGCTATCATTGGAAAAAA+TGG - chr1.3:79520800-79520819 MS.gene046170:CDS 30.0%
CCTTATTCTAAATGTGAGTT+CGG - chr1.3:79520961-79520980 MS.gene046170:intron 30.0%
CTTAGAAATATTGAGCTTGA+AGG - chr1.3:79520896-79520915 MS.gene046170:CDS 30.0%
! CTTCAAGCTCAATATTTCTA+AGG + chr1.3:79520898-79520917 None:intergenic 30.0%
! TCACATTTAGAATAAGGTCA+TGG + chr1.3:79520958-79520977 None:intergenic 30.0%
! TGTTATGTGATAGATTTGCT+TGG + chr1.3:79520834-79520853 None:intergenic 30.0%
!! AGCTCAATATTTCTAAGGTT+AGG + chr1.3:79520893-79520912 None:intergenic 30.0%
!!! TGTGAAGTAATGTTTTTTCC+TGG + chr1.3:79520998-79521017 None:intergenic 30.0%
AACAAGTTCAATACAGCTGA+AGG - chr1.3:79520566-79520585 MS.gene046170:CDS 35.0%
AGGTGCTAAACTTTCCATTA+GGG - chr1.3:79520853-79520872 MS.gene046170:CDS 35.0%
ATTTCCTGCATTATGTTCCT+GGG - chr1.3:79520411-79520430 MS.gene046170:CDS 35.0%
CTGTGTGAAAACTTTACCAA+AGG - chr1.3:79521052-79521071 MS.gene046170:intron 35.0%
TTTGGATTTCTACCAATTGG+TGG + chr1.3:79520488-79520507 None:intergenic 35.0%
! CCGAACTCACATTTAGAATA+AGG + chr1.3:79520964-79520983 None:intergenic 35.0%
!! TATTGAACTTGTTGCACAAC+CGG + chr1.3:79520559-79520578 None:intergenic 35.0%
!!! GAAGTAATGTTTTTTCCTGG+AGG + chr1.3:79520995-79521014 None:intergenic 35.0%
ACAGATGAATTATGCAAGCC+TGG - chr1.3:79521115-79521134 MS.gene046170:CDS 40.0%
ATCTGAGTCATGTTCCCTAA+TGG + chr1.3:79520870-79520889 None:intergenic 40.0%
CAGGAACATAATGCAGGAAA+TGG + chr1.3:79520412-79520431 None:intergenic 40.0%
CAGGTGCTAAACTTTCCATT+AGG - chr1.3:79520852-79520871 MS.gene046170:CDS 40.0%
CATTTCCTGCATTATGTTCC+TGG - chr1.3:79520410-79520429 MS.gene046170:CDS 40.0%
GTCTCTCAGATGATCAATGT+CGG - chr1.3:79520446-79520465 MS.gene046170:CDS 40.0%
TAGAATAAGGTCATGGACCA+TGG + chr1.3:79520951-79520970 None:intergenic 40.0%
TTTCCTGCATTATGTTCCTG+GGG - chr1.3:79520412-79520431 MS.gene046170:CDS 40.0%
! GGTAAAGTTTTCACACAGCT+TGG + chr1.3:79521050-79521069 None:intergenic 40.0%
! TGGTCTTGAAGTTGTTTGCA+GGG + chr1.3:79521030-79521049 None:intergenic 40.0%
!! ATTGAACTTGTTGCACAACC+GGG + chr1.3:79520558-79520577 None:intergenic 40.0%
!! GATAAATGTCACTTTGCCCA+TGG - chr1.3:79520602-79520621 MS.gene046170:CDS 40.0%
!! TCCAATGATAGCTCTAGCAA+GGG + chr1.3:79520795-79520814 None:intergenic 40.0%
!! TTCCAATGATAGCTCTAGCA+AGG + chr1.3:79520796-79520815 None:intergenic 40.0%
!! TTGGTCTTGAAGTTGTTTGC+AGG + chr1.3:79521031-79521050 None:intergenic 40.0%
ACAGCTGAAGGTCGCAAATT+TGG - chr1.3:79520578-79520597 MS.gene046170:CDS 45.0%
ACCCTTGCTAGAGCTATCAT+TGG - chr1.3:79520791-79520810 MS.gene046170:CDS 45.0%
AGCTGAAGGTCGCAAATTTG+GGG - chr1.3:79520580-79520599 MS.gene046170:CDS 45.0%
AGTCCTGCTATTCCACCAAT+TGG - chr1.3:79520473-79520492 MS.gene046170:CDS 45.0%
ATATGAAGATACTCGCGCCA+TGG - chr1.3:79520658-79520677 MS.gene046170:CDS 45.0%
ATGGAAACCAGATGAGTGCA+GGG + chr1.3:79520238-79520257 None:intergenic 45.0%
CAGCTGAAGGTCGCAAATTT+GGG - chr1.3:79520579-79520598 MS.gene046170:CDS 45.0%
CATCTATTATGCAGCACCTC+TGG - chr1.3:79520365-79520384 MS.gene046170:CDS 45.0%
CGCGAGTATCTTCATATGCA+GGG + chr1.3:79520655-79520674 None:intergenic 45.0%
CTAAATGTGAGTTCGGTCTC+TGG - chr1.3:79520968-79520987 MS.gene046170:intron 45.0%
CTACCAATTGGTGGAATAGC+AGG + chr1.3:79520479-79520498 None:intergenic 45.0%
GGTCTTGAAGTTGTTTGCAG+GGG + chr1.3:79521029-79521048 None:intergenic 45.0%
TATGAAGATACTCGCGCCAT+GGG - chr1.3:79520659-79520678 MS.gene046170:CDS 45.0%
TTCCTGCATTATGTTCCTGG+GGG - chr1.3:79520413-79520432 MS.gene046170:CDS 45.0%
! ACCAAAGGATCCTGCACTTT+TGG - chr1.3:79521067-79521086 MS.gene046170:intron 45.0%
! ATGCAAAGCAGCAGTGTTGA+TGG - chr1.3:79520686-79520705 MS.gene046170:CDS 45.0%
! CAAAGGATCCTGCACTTTTG+GGG - chr1.3:79521069-79521088 MS.gene046170:intron 45.0%
! CCAAAGGATCCTGCACTTTT+GGG - chr1.3:79521068-79521087 MS.gene046170:intron 45.0%
!! TGCAAAGCAGCAGTGTTGAT+GGG - chr1.3:79520687-79520706 MS.gene046170:CDS 45.0%
AAATGGCATCCCTCGCCAAA+TGG + chr1.3:79520395-79520414 None:intergenic 50.0%
AGCACCTCTGGATGTCCATT+TGG - chr1.3:79520377-79520396 MS.gene046170:CDS 50.0%
ATCTTCATATGCAGGGACCG+TGG + chr1.3:79520648-79520667 None:intergenic 50.0%
GATCAAACAAGCCAGTGCCA+TGG - chr1.3:79520931-79520950 MS.gene046170:CDS 50.0%
GATGGAAACCAGATGAGTGC+AGG + chr1.3:79520239-79520258 None:intergenic 50.0%
GCGCGAGTATCTTCATATGC+AGG + chr1.3:79520656-79520675 None:intergenic 50.0%
TCACTTTGCCCATGGTGAGT+GGG - chr1.3:79520610-79520629 MS.gene046170:CDS 50.0%
TCTGGATGTCCATTTGGCGA+GGG - chr1.3:79520383-79520402 MS.gene046170:CDS 50.0%
TCTTCATATGCAGGGACCGT+GGG + chr1.3:79520647-79520666 None:intergenic 50.0%
TGGAAACCAGATGAGTGCAG+GGG + chr1.3:79520237-79520256 None:intergenic 50.0%
! CCCAAAAGTGCAGGATCCTT+TGG + chr1.3:79521071-79521090 None:intergenic 50.0%
! GCTGCTTTGCATTTGTCCCA+TGG + chr1.3:79520678-79520697 None:intergenic 50.0%
!! GATCCTGCACTTTTGGGGAA+AGG - chr1.3:79521074-79521093 MS.gene046170:intron 50.0%
!! GGGAAGGATGGTGGAACATT+TGG + chr1.3:79520506-79520525 None:intergenic 50.0%
AACCGGGTCTTAGCAACTGG+TGG + chr1.3:79520542-79520561 None:intergenic 55.0%
AAGGTCATGGACCATGGCAC+TGG + chr1.3:79520945-79520964 None:intergenic 55.0%
ACTGGTGGAGAAGAACCGTC+TGG + chr1.3:79520527-79520546 None:intergenic 55.0%
AGCCCCCAGGAACATAATGC+AGG + chr1.3:79520418-79520437 None:intergenic 55.0%
AGTGGCCGACACTCCAAAAC+CGG + chr1.3:79520750-79520769 None:intergenic 55.0%
CACAACCGGGTCTTAGCAAC+TGG + chr1.3:79520545-79520564 None:intergenic 55.0%
CATCTGTTCCATGCGCGAAG+TGG + chr1.3:79521102-79521121 None:intergenic 55.0%
CTCCACCAGTTGCTAAGACC+CGG - chr1.3:79520537-79520556 MS.gene046170:CDS 55.0%
CTCGCCAAATGGACATCCAG+AGG + chr1.3:79520384-79520403 None:intergenic 55.0%
CTCTGGATGTCCATTTGGCG+AGG - chr1.3:79520382-79520401 MS.gene046170:CDS 55.0%
CTGGTGGAGAAGAACCGTCT+GGG + chr1.3:79520526-79520545 None:intergenic 55.0%
GAAGAACCGTCTGGGAAGGA+TGG + chr1.3:79520518-79520537 None:intergenic 55.0%
GTTACACCCCTGCACTCATC+TGG - chr1.3:79520228-79520247 MS.gene046170:CDS 55.0%
GTTCCACCATCCTTCCCAGA+CGG - chr1.3:79520509-79520528 MS.gene046170:CDS 55.0%
TGGAGAAGAACCGTCTGGGA+AGG + chr1.3:79520522-79520541 None:intergenic 55.0%
! GCACCTTTCCCCAAAAGTGC+AGG + chr1.3:79521080-79521099 None:intergenic 55.0%
! GTCACTTTGCCCATGGTGAG+TGG - chr1.3:79520609-79520628 MS.gene046170:CDS 55.0%
!! GAGACAGCTTTAAAGCCCCC+AGG + chr1.3:79520431-79520450 None:intergenic 55.0%
!!! TGCTGCCGGTTTTGGAGTGT+CGG - chr1.3:79520742-79520761 MS.gene046170:CDS 55.0%
AGCTCCATGAGCTGGAGGTG+GGG + chr1.3:79520723-79520742 None:intergenic 60.0%
AGTTCGGTCTCTGGACCTCC+AGG - chr1.3:79520977-79520996 MS.gene046170:intron 60.0%
CAGCTCCATGAGCTGGAGGT+GGG + chr1.3:79520724-79520743 None:intergenic 60.0%
GAACCGTCTGGGAAGGATGG+TGG + chr1.3:79520515-79520534 None:intergenic 60.0%
!! GAAAGGTGCCACTTCGCGCA+TGG - chr1.3:79521091-79521110 MS.gene046170:intron 60.0%
!!! CATGGAGCTGCTGCCGGTTT+TGG - chr1.3:79520734-79520753 MS.gene046170:CDS 60.0%
CCAGCTCATGGAGCTGCTGC+CGG - chr1.3:79520728-79520747 MS.gene046170:CDS 65.0%
GCAGCAGCTCCATGAGCTGG+AGG + chr1.3:79520728-79520747 None:intergenic 65.0%
GCAGCTCCATGAGCTGGAGG+TGG + chr1.3:79520725-79520744 None:intergenic 65.0%
GCCACGCTCCCACTCACCAT+GGG + chr1.3:79520621-79520640 None:intergenic 65.0%
GCTCCATGAGCTGGAGGTGG+GGG + chr1.3:79520722-79520741 None:intergenic 65.0%
TGCCACGCTCCCACTCACCA+TGG + chr1.3:79520622-79520641 None:intergenic 65.0%
! ATGGTGAGTGGGAGCGTGGC+AGG - chr1.3:79520621-79520640 MS.gene046170:CDS 65.0%
CCGGCAGCAGCTCCATGAGC+TGG + chr1.3:79520731-79520750 None:intergenic 70.0%
GAGCCCCCACCTCCAGCTCA+TGG - chr1.3:79520716-79520735 MS.gene046170:CDS 70.0%
GCCCATGGTGAGTGGGAGCG+TGG - chr1.3:79520617-79520636 MS.gene046170:CDS 70.0%
! GTGGGAGCGTGGCAGGCCCA+CGG - chr1.3:79520628-79520647 MS.gene046170:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 79520200 79521144 79520200 ID=MS.gene046170
chr1.3 mRNA 79520200 79521144 79520200 ID=MS.gene046170.t1;Parent=MS.gene046170
chr1.3 exon 79521095 79521144 79521095 ID=MS.gene046170.t1.exon1;Parent=MS.gene046170.t1
chr1.3 CDS 79521095 79521144 79521095 ID=cds.MS.gene046170.t1;Parent=MS.gene046170.t1
chr1.3 exon 79520200 79520965 79520200 ID=MS.gene046170.t1.exon2;Parent=MS.gene046170.t1
chr1.3 CDS 79520200 79520965 79520200 ID=cds.MS.gene046170.t1;Parent=MS.gene046170.t1
Gene Sequence

>MS.gene046170

ATGCGTCATGTGTTCGATAACTGTTTTTGTTACACCCCTGCACTCATCTGGTTTCCATCAAACTGTAAAAATGATTTGTGAATTGCAGAGACCATTCAAATATTTACTAATTTTTTAGTCTGAACAGATGGTTTATATGTATGTTAGTTTAATATTATATGCTTTCATCTATTATGCAGCACCTCTGGATGTCCATTTGGCGAGGGATGCCATTTCCTGCATTATGTTCCTGGGGGCTTTAAAGCTGTCTCTCAGATGATCAATGTCGGTAGCAGTCCTGCTATTCCACCAATTGGTAGAAATCCAAATGTTCCACCATCCTTCCCAGACGGTTCTTCTCCACCAGTTGCTAAGACCCGGTTGTGCAACAAGTTCAATACAGCTGAAGGTCGCAAATTTGGGGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCGTGGCAGGCCCACGGTCCCTGCATATGAAGATACTCGCGCCATGGGACAAATGCAAAGCAGCAGTGTTGATGGGAGAATTGAGCCCCCACCTCCAGCTCATGGAGCTGCTGCCGGTTTTGGAGTGTCGGCCACTGCAAAAGTTAATATTAATGCTACCCTTGCTAGAGCTATCATTGGAAAAAATGGTGTTAACTCCAAGCAAATCTATCACATAACAGGTGCTAAACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAATATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTCCATGACCTTATTCTAAATGTGAGTTCGGTCTCTGGACCTCCAGGAAAAAACATTACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAACTTTACCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCACTTCGCGCATGGAACAGATGAATTATGCAAGCCTGGAATGTGA
Protein sequence

>MS.gene046170.t1

MRHVFDNCFCYTPALICTSGCPFGEGCHFLHYVPGGFKAVSQMINVGSSPAIPPIGRNPNVPPSFPDGSSPPVAKTRLCNKFNTAEGRKFGDKCHFAHGEWERGRPTVPAYEDTRAMGQMQSSSVDGRIEPPPPAHGAAAGFGVSATAKVNINATLARAIIGKNGVNSKQIYHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELCKPGM