Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046193.t1 | XP_003598516.1 | 90.8 | 239 | 19 | 1 | 1 | 239 | 94 | 329 | 6.90E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046193.t1 | Q9M2U4 | 45.3 | 181 | 69 | 4 | 29 | 208 | 31 | 182 | 2.5e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046193.t1 | G7J0K6 | 90.8 | 239 | 19 | 1 | 1 | 239 | 94 | 329 | 5.0e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene046193.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046193.t1 | MTR_3g014660 | 97.490 | 239 | 3 | 1 | 1 | 239 | 94 | 329 | 1.87e-174 | 483 |
| MS.gene046193.t1 | MTR_8g039110 | 63.374 | 243 | 73 | 9 | 5 | 238 | 91 | 326 | 4.94e-91 | 271 |
| MS.gene046193.t1 | MTR_5g089750 | 55.556 | 171 | 73 | 1 | 41 | 211 | 249 | 416 | 8.22e-55 | 182 |
| MS.gene046193.t1 | MTR_0363s0040 | 57.895 | 114 | 41 | 3 | 5 | 117 | 91 | 198 | 2.17e-36 | 129 |
| MS.gene046193.t1 | MTR_8g076620 | 42.038 | 157 | 63 | 5 | 41 | 196 | 121 | 250 | 1.31e-33 | 124 |
| MS.gene046193.t1 | MTR_5g021130 | 42.073 | 164 | 79 | 3 | 41 | 198 | 100 | 253 | 2.91e-31 | 117 |
| MS.gene046193.t1 | MTR_3g112510 | 41.509 | 159 | 72 | 6 | 41 | 196 | 86 | 226 | 8.69e-29 | 110 |
| MS.gene046193.t1 | MTR_4g071110 | 34.783 | 161 | 70 | 4 | 41 | 201 | 17 | 142 | 6.32e-23 | 94.4 |
| MS.gene046193.t1 | MTR_1g023230 | 71.111 | 45 | 13 | 0 | 41 | 85 | 122 | 166 | 3.70e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046193.t1 | AT5G12330 | 52.020 | 198 | 90 | 4 | 41 | 234 | 112 | 308 | 1.66e-57 | 185 |
| MS.gene046193.t1 | AT5G12330 | 52.020 | 198 | 90 | 4 | 41 | 234 | 112 | 308 | 1.66e-57 | 185 |
| MS.gene046193.t1 | AT5G12330 | 52.020 | 198 | 90 | 4 | 41 | 234 | 199 | 395 | 6.23e-57 | 186 |
| MS.gene046193.t1 | AT3G54430 | 45.304 | 181 | 69 | 4 | 29 | 208 | 31 | 182 | 1.89e-44 | 147 |
| MS.gene046193.t1 | AT3G51060 | 43.871 | 155 | 70 | 3 | 41 | 194 | 144 | 282 | 2.01e-36 | 132 |
| MS.gene046193.t1 | AT5G66350 | 42.308 | 156 | 75 | 1 | 41 | 196 | 120 | 260 | 2.40e-35 | 128 |
| MS.gene046193.t1 | AT5G66350 | 42.308 | 156 | 75 | 1 | 41 | 196 | 120 | 260 | 2.83e-35 | 128 |
| MS.gene046193.t1 | AT5G66350 | 42.308 | 156 | 75 | 1 | 41 | 196 | 120 | 260 | 4.22e-35 | 127 |
| MS.gene046193.t1 | AT1G75520 | 39.241 | 158 | 94 | 1 | 41 | 196 | 125 | 282 | 2.38e-34 | 126 |
| MS.gene046193.t1 | AT1G19790 | 36.612 | 183 | 57 | 3 | 41 | 196 | 119 | 269 | 2.85e-32 | 120 |
| MS.gene046193.t1 | AT1G19790 | 36.612 | 183 | 57 | 3 | 41 | 196 | 119 | 269 | 2.85e-32 | 120 |
| MS.gene046193.t1 | AT2G21400 | 37.107 | 159 | 74 | 3 | 39 | 197 | 8 | 140 | 1.39e-30 | 112 |
| MS.gene046193.t1 | AT2G21400 | 37.107 | 159 | 74 | 3 | 39 | 197 | 7 | 139 | 1.41e-30 | 112 |
| MS.gene046193.t1 | AT4G36260 | 39.752 | 161 | 82 | 4 | 41 | 196 | 94 | 244 | 2.09e-30 | 115 |
| MS.gene046193.t1 | AT2G21400 | 37.736 | 159 | 58 | 3 | 39 | 197 | 8 | 125 | 5.51e-29 | 107 |
| MS.gene046193.t1 | AT2G21400 | 37.736 | 159 | 58 | 3 | 39 | 197 | 7 | 124 | 5.54e-29 | 107 |
| MS.gene046193.t1 | AT2G18120 | 38.750 | 160 | 73 | 2 | 41 | 200 | 72 | 206 | 8.87e-29 | 108 |
| MS.gene046193.t1 | AT2G18120 | 38.650 | 163 | 71 | 3 | 41 | 200 | 72 | 208 | 1.07e-28 | 108 |
| MS.gene046193.t1 | AT5G12330 | 52.885 | 104 | 46 | 2 | 41 | 142 | 112 | 214 | 1.73e-25 | 100 |
| MS.gene046193.t1 | AT5G33210 | 48.810 | 84 | 37 | 1 | 41 | 124 | 17 | 94 | 1.32e-19 | 81.3 |
| MS.gene046193.t1 | AT5G33210 | 42.453 | 106 | 52 | 2 | 41 | 146 | 52 | 148 | 5.43e-19 | 81.6 |
Find 58 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGATGGTGAGGGTTGTTC+TGG | 0.272937 | 3.3:-9620463 | MS.gene046193:CDS |
| TTTGTCAAGATTGTGGTAAT+AGG | 0.301923 | 3.3:-9620633 | MS.gene046193:CDS |
| TCTGGTGTTAAGAGACAAAA+AGG | 0.305575 | 3.3:-9620445 | MS.gene046193:CDS |
| TTCCAATTGCAGTTACTCTA+TGG | 0.320772 | 3.3:+9619864 | None:intergenic |
| TTTGGAAGATTCACTACTTC+AGG | 0.330560 | 3.3:+9620745 | None:intergenic |
| TTCATGCACCAGCTGTATTC+AGG | 0.332427 | 3.3:-9619889 | MS.gene046193:CDS |
| GCAGGGTAAGCATTATTGTT+TGG | 0.337600 | 3.3:+9619665 | None:intergenic |
| CTCTATGATCATGGTGTTGA+TGG | 0.354571 | 3.3:-9619776 | MS.gene046193:CDS |
| GAGCTAGTAGCAAAACTCTT+TGG | 0.380098 | 3.3:+9620358 | None:intergenic |
| TGAAGATGAATTTGCTTACT+TGG | 0.385662 | 3.3:-9619837 | MS.gene046193:CDS |
| CGGGAGGTGGAGATGTTTGC+CGG | 0.390512 | 3.3:-9620499 | MS.gene046193:CDS |
| AGAAGAGAATCATGGCAAAA+TGG | 0.391361 | 3.3:-9620704 | MS.gene046193:CDS |
| GTGGAGATGTTTGCCGGTGG+TGG | 0.398827 | 3.3:-9620493 | MS.gene046193:CDS |
| TTGTCAAGATTGTGGTAATA+GGG | 0.399150 | 3.3:-9620632 | MS.gene046193:CDS |
| GAGATGTTTGCCGGTGGTGG+TGG | 0.399774 | 3.3:-9620490 | MS.gene046193:CDS |
| ATGTTTGCCGGTGGTGGTGG+TGG | 0.402912 | 3.3:-9620487 | MS.gene046193:CDS |
| TTGGCTACAGTTCATATTAG+TGG | 0.406244 | 3.3:-9619818 | MS.gene046193:CDS |
| TGCCATAGAGTAACTGCAAT+TGG | 0.407623 | 3.3:-9619866 | MS.gene046193:CDS |
| TTGTGTTTCAGAACTTCAAT+TGG | 0.409173 | 3.3:-9619738 | MS.gene046193:CDS |
| GTACTCATTTGAAGAGTACT+TGG | 0.429685 | 3.3:-9620546 | MS.gene046193:CDS |
| TTCGACGCGTCGTCGGGAAC+GGG | 0.431036 | 3.3:-9620518 | MS.gene046193:CDS |
| TGGTGGTGGTGGTGATGGTG+AGG | 0.431191 | 3.3:-9620473 | MS.gene046193:CDS |
| GCGTCGTCGGGAACGGGAGG+TGG | 0.432446 | 3.3:-9620512 | MS.gene046193:CDS |
| GATTCCTTCGACGCGTCGTC+GGG | 0.434363 | 3.3:-9620524 | MS.gene046193:CDS |
| TCATGGCAAAATGGCTATGA+TGG | 0.434890 | 3.3:-9620695 | MS.gene046193:CDS |
| GGTGGTGGTGGTGATGGTGA+GGG | 0.436973 | 3.3:-9620472 | MS.gene046193:CDS |
| AAAGGGTTTCTCTATGATCA+TGG | 0.441459 | 3.3:-9619785 | MS.gene046193:CDS |
| CTTCGACGCGTCGTCGGGAA+CGG | 0.441638 | 3.3:-9620519 | MS.gene046193:CDS |
| AGAGTAACTGCAATTGGAAA+TGG | 0.445433 | 3.3:-9619860 | MS.gene046193:CDS |
| CATGGCTAGCTAGCAGAAGC+AGG | 0.449543 | 3.3:+9619647 | None:intergenic |
| AAGATGTAGAACTTGTTGTA+AGG | 0.450666 | 3.3:-9620587 | MS.gene046193:CDS |
| GGTGAATGTTCTTCTGCAAT+TGG | 0.456180 | 3.3:-9619692 | MS.gene046193:CDS |
| TTTGCCGGTGGTGGTGGTGG+TGG | 0.456958 | 3.3:-9620484 | MS.gene046193:CDS |
| GGTTTCAAAGAGGGTTTACC+AGG | 0.457703 | 3.3:-9619917 | MS.gene046193:CDS |
| TCTCATAGCTCTAACTCTAA+TGG | 0.458294 | 3.3:-9620388 | MS.gene046193:CDS |
| AGTTCTGAAACACAAGGCAT+TGG | 0.476027 | 3.3:+9619746 | None:intergenic |
| TGTGTTTCAGAACTTCAATT+GGG | 0.498389 | 3.3:-9619737 | MS.gene046193:CDS |
| GGATTCCTTCGACGCGTCGT+CGG | 0.508147 | 3.3:-9620525 | MS.gene046193:CDS |
| TATAGAGTTTGTCAAGATTG+TGG | 0.512497 | 3.3:-9620640 | MS.gene046193:CDS |
| AATAATTGTAGTGGAAAGAA+TGG | 0.512653 | 3.3:-9619713 | MS.gene046193:CDS |
| AATGAAGAGAATGGTGTGTA+TGG | 0.527653 | 3.3:-9620670 | MS.gene046193:CDS |
| ACAGATGCAGGTTTCAAAGA+GGG | 0.554512 | 3.3:-9619926 | MS.gene046193:intron |
| AGATGTAGAACTTGTTGTAA+GGG | 0.555620 | 3.3:-9620586 | MS.gene046193:CDS |
| CTATGGCACCTGAATACAGC+TGG | 0.563710 | 3.3:+9619881 | None:intergenic |
| ATCACTGAAGAAGAGAATCA+TGG | 0.572196 | 3.3:-9620712 | MS.gene046193:CDS |
| CGTTCCCGACGACGCGTCGA+AGG | 0.578779 | 3.3:+9620520 | None:intergenic |
| CAATTGGGAAATAATTGTAG+TGG | 0.580003 | 3.3:-9619722 | MS.gene046193:CDS |
| AGAGAAACCCTTTGAAAACA+TGG | 0.595856 | 3.3:+9619795 | None:intergenic |
| TACAGATGCAGGTTTCAAAG+AGG | 0.608087 | 3.3:-9619927 | MS.gene046193:intron |
| TCTATGATCATGGTGTTGAT+GGG | 0.608318 | 3.3:-9619775 | MS.gene046193:CDS |
| GACGCGTCGTCGGGAACGGG+AGG | 0.613662 | 3.3:-9620515 | MS.gene046193:CDS |
| GCTACTAGCTCTTGTCACCA+AGG | 0.619674 | 3.3:-9620346 | MS.gene046193:intron |
| AGAACTTGTTGTAAGGGACG+TGG | 0.624223 | 3.3:-9620580 | MS.gene046193:CDS |
| ATGATGGAAAATGAAGAGAA+TGG | 0.654615 | 3.3:-9620679 | MS.gene046193:CDS |
| ATGGCTAGCTAGCAGAAGCA+GGG | 0.656680 | 3.3:+9619648 | None:intergenic |
| GAGGTGGAGATGTTTGCCGG+TGG | 0.687056 | 3.3:-9620496 | MS.gene046193:CDS |
| GCTGGTGCATGAACATGACC+TGG | 0.691114 | 3.3:+9619899 | None:intergenic |
| AATTGAAGTTCTGAAACACA+AGG | 0.729820 | 3.3:+9619740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCATATAGTTTGTGTT+TGG | + | chr3.3:9620350-9620369 | None:intergenic | 20.0% |
| !!! | TTTAAATGTTTAGTTTGACA+AGG | - | chr3.3:9620108-9620127 | MS.gene046193:intron | 20.0% |
| ! | AAGAGACAAAAAGGTTTATT+AGG | - | chr3.3:9619967-9619986 | MS.gene046193:intron | 25.0% |
| ! | AGAGACAAAAAGGTTTATTA+GGG | - | chr3.3:9619968-9619987 | MS.gene046193:intron | 25.0% |
| ! | TTTGTGTTTGGTATTACAAT+TGG | + | chr3.3:9620338-9620357 | None:intergenic | 25.0% |
| !! | AATAATTGTAGTGGAAAGAA+TGG | - | chr3.3:9620690-9620709 | MS.gene046193:CDS | 25.0% |
| !!! | CATTAATTTGTTAAGTGTCT+TGG | - | chr3.3:9620407-9620426 | MS.gene046193:CDS | 25.0% |
| ACATACACATAGTACATGTT+TGG | + | chr3.3:9620201-9620220 | None:intergenic | 30.0% | |
| CAATTGGGAAATAATTGTAG+TGG | - | chr3.3:9620681-9620700 | MS.gene046193:CDS | 30.0% | |
| GCATTAGTATTGTATACACA+AGG | - | chr3.3:9620382-9620401 | MS.gene046193:CDS | 30.0% | |
| GTAGTGAATCTTCCAAAAAA+AGG | - | chr3.3:9619664-9619683 | MS.gene046193:CDS | 30.0% | |
| TATAGAGTTTGTCAAGATTG+TGG | - | chr3.3:9619763-9619782 | MS.gene046193:CDS | 30.0% | |
| TGTGTTTCAGAACTTCAATT+GGG | - | chr3.3:9620666-9620685 | MS.gene046193:CDS | 30.0% | |
| TTGTCAAGATTGTGGTAATA+GGG | - | chr3.3:9619771-9619790 | MS.gene046193:CDS | 30.0% | |
| TTGTGTTTCAGAACTTCAAT+TGG | - | chr3.3:9620665-9620684 | MS.gene046193:CDS | 30.0% | |
| TTTGTCAAGATTGTGGTAAT+AGG | - | chr3.3:9619770-9619789 | MS.gene046193:CDS | 30.0% | |
| ! | ATGATGGAAAATGAAGAGAA+TGG | - | chr3.3:9619724-9619743 | MS.gene046193:CDS | 30.0% |
| ! | CCACTTAATTTTCAAAAAGC+GGG | + | chr3.3:9620296-9620315 | None:intergenic | 30.0% |
| ! | CCCACTTAATTTTCAAAAAG+CGG | + | chr3.3:9620297-9620316 | None:intergenic | 30.0% |
| ! | TGAAGATGAATTTGCTTACT+TGG | - | chr3.3:9620566-9620585 | MS.gene046193:CDS | 30.0% |
| !! | AAAAGTAAGTGAAAGTACCT+TGG | + | chr3.3:9620077-9620096 | None:intergenic | 30.0% |
| !! | AAGATGTAGAACTTGTTGTA+AGG | - | chr3.3:9619816-9619835 | MS.gene046193:CDS | 30.0% |
| !! | AATTGAAGTTCTGAAACACA+AGG | + | chr3.3:9620666-9620685 | None:intergenic | 30.0% |
| !! | AGATGTAGAACTTGTTGTAA+GGG | - | chr3.3:9619817-9619836 | MS.gene046193:CDS | 30.0% |
| !! | GTTTAGTTTGACAAGGAAAT+TGG | - | chr3.3:9620115-9620134 | MS.gene046193:intron | 30.0% |
| !! | TAATTTGTTAAGTGTCTTGG+AGG | - | chr3.3:9620410-9620429 | MS.gene046193:CDS | 30.0% |
| !! | TTATAGTGTTGCTCTCATTT+TGG | - | chr3.3:9620159-9620178 | MS.gene046193:intron | 30.0% |
| !!! | CCGCTTTTTGAAAATTAAGT+GGG | - | chr3.3:9620294-9620313 | MS.gene046193:intron | 30.0% |
| AAAGGGTTTCTCTATGATCA+TGG | - | chr3.3:9620618-9620637 | MS.gene046193:CDS | 35.0% | |
| AATGAAGAGAATGGTGTGTA+TGG | - | chr3.3:9619733-9619752 | MS.gene046193:CDS | 35.0% | |
| ACAATTGGATGTCAGAATCA+CGG | + | chr3.3:9620323-9620342 | None:intergenic | 35.0% | |
| ACATGTACTATGTGTATGTC+TGG | - | chr3.3:9620202-9620221 | MS.gene046193:intron | 35.0% | |
| AGAAGAGAATCATGGCAAAA+TGG | - | chr3.3:9619699-9619718 | MS.gene046193:CDS | 35.0% | |
| AGAGTAACTGCAATTGGAAA+TGG | - | chr3.3:9620543-9620562 | MS.gene046193:CDS | 35.0% | |
| ATCACTGAAGAAGAGAATCA+TGG | - | chr3.3:9619691-9619710 | MS.gene046193:CDS | 35.0% | |
| TCAGCAACCTTAATTTCATG+TGG | + | chr3.3:9620437-9620456 | None:intergenic | 35.0% | |
| TTCCAATTGCAGTTACTCTA+TGG | + | chr3.3:9620542-9620561 | None:intergenic | 35.0% | |
| TTCTGTTGAATTACAGATGC+AGG | - | chr3.3:9620465-9620484 | MS.gene046193:CDS | 35.0% | |
| TTGGCTACAGTTCATATTAG+TGG | - | chr3.3:9620585-9620604 | MS.gene046193:CDS | 35.0% | |
| TTTGGAAGATTCACTACTTC+AGG | + | chr3.3:9619661-9619680 | None:intergenic | 35.0% | |
| ! | AGAGAAACCCTTTGAAAACA+TGG | + | chr3.3:9620611-9620630 | None:intergenic | 35.0% |
| ! | ATTAGTGGCCATGTTTTCAA+AGG | - | chr3.3:9620600-9620619 | MS.gene046193:CDS | 35.0% |
| ! | TCTGGTGTTAAGAGACAAAA+AGG | - | chr3.3:9619958-9619977 | MS.gene046193:intron | 35.0% |
| ! | TTAGTGGCCATGTTTTCAAA+GGG | - | chr3.3:9620601-9620620 | MS.gene046193:CDS | 35.0% |
| !! | GTACTCATTTGAAGAGTACT+TGG | - | chr3.3:9619857-9619876 | MS.gene046193:CDS | 35.0% |
| !! | TCTATGATCATGGTGTTGAT+GGG | - | chr3.3:9620628-9620647 | MS.gene046193:CDS | 35.0% |
| !! | TCTCATAGCTCTAACTCTAA+TGG | - | chr3.3:9620015-9620034 | MS.gene046193:intron | 35.0% |
| !!! | CCCGCTTTTTGAAAATTAAG+TGG | - | chr3.3:9620293-9620312 | MS.gene046193:intron | 35.0% |
| !!! | TCAGTGATCACTCCTTTTTT+TGG | + | chr3.3:9619679-9619698 | None:intergenic | 35.0% |
| ACAGATGCAGGTTTCAAAGA+GGG | - | chr3.3:9620477-9620496 | MS.gene046193:CDS | 40.0% | |
| CTGCAGCTTCTACAAAATCA+CGG | + | chr3.3:9620262-9620281 | None:intergenic | 40.0% | |
| GAGCTAGTAGCAAAACTCTT+TGG | + | chr3.3:9620048-9620067 | None:intergenic | 40.0% | |
| GCAGGGTAAGCATTATTGTT+TGG | + | chr3.3:9620741-9620760 | None:intergenic | 40.0% | |
| GGTGAATGTTCTTCTGCAAT+TGG | - | chr3.3:9620711-9620730 | MS.gene046193:CDS | 40.0% | |
| TACAGATGCAGGTTTCAAAG+AGG | - | chr3.3:9620476-9620495 | MS.gene046193:CDS | 40.0% | |
| TCATGGCAAAATGGCTATGA+TGG | - | chr3.3:9619708-9619727 | MS.gene046193:CDS | 40.0% | |
| TGCCATAGAGTAACTGCAAT+TGG | - | chr3.3:9620537-9620556 | MS.gene046193:CDS | 40.0% | |
| TGGAGGACCACATGAAATTA+AGG | - | chr3.3:9620427-9620446 | MS.gene046193:CDS | 40.0% | |
| ! | CTCTATGATCATGGTGTTGA+TGG | - | chr3.3:9620627-9620646 | MS.gene046193:CDS | 40.0% |
| !! | AGTTCTGAAACACAAGGCAT+TGG | + | chr3.3:9620660-9620679 | None:intergenic | 40.0% |
| GGTTTCAAAGAGGGTTTACC+AGG | - | chr3.3:9620486-9620505 | MS.gene046193:CDS | 45.0% | |
| TTCATGCACCAGCTGTATTC+AGG | - | chr3.3:9620514-9620533 | MS.gene046193:CDS | 45.0% | |
| !! | AGAACTTGTTGTAAGGGACG+TGG | - | chr3.3:9619823-9619842 | MS.gene046193:CDS | 45.0% |
| CTATGGCACCTGAATACAGC+TGG | + | chr3.3:9620525-9620544 | None:intergenic | 50.0% | |
| ! | GCTACTAGCTCTTGTCACCA+AGG | - | chr3.3:9620057-9620076 | MS.gene046193:intron | 50.0% |
| GCTGGTGCATGAACATGACC+TGG | + | chr3.3:9620507-9620526 | None:intergenic | 55.0% | |
| ! | GGTGATGGTGAGGGTTGTTC+TGG | - | chr3.3:9619940-9619959 | MS.gene046193:intron | 55.0% |
| ATCACCACCACCACCACCAC+CGG | + | chr3.3:9619926-9619945 | None:intergenic | 60.0% | |
| CGGGAGGTGGAGATGTTTGC+CGG | - | chr3.3:9619904-9619923 | MS.gene046193:CDS | 60.0% | |
| GAGGTGGAGATGTTTGCCGG+TGG | - | chr3.3:9619907-9619926 | MS.gene046193:CDS | 60.0% | |
| GATTCCTTCGACGCGTCGTC+GGG | - | chr3.3:9619879-9619898 | MS.gene046193:CDS | 60.0% | |
| GGATTCCTTCGACGCGTCGT+CGG | - | chr3.3:9619878-9619897 | MS.gene046193:CDS | 60.0% | |
| GTGGAGATGTTTGCCGGTGG+TGG | - | chr3.3:9619910-9619929 | MS.gene046193:CDS | 60.0% | |
| ! | GAGATGTTTGCCGGTGGTGG+TGG | - | chr3.3:9619913-9619932 | MS.gene046193:CDS | 60.0% |
| !! | ATGTTTGCCGGTGGTGGTGG+TGG | - | chr3.3:9619916-9619935 | MS.gene046193:CDS | 60.0% |
| !! | GGTGGTGGTGGTGATGGTGA+GGG | - | chr3.3:9619931-9619950 | MS.gene046193:intron | 60.0% |
| !! | TGGTGGTGGTGGTGATGGTG+AGG | - | chr3.3:9619930-9619949 | MS.gene046193:intron | 60.0% |
| CTTCGACGCGTCGTCGGGAA+CGG | - | chr3.3:9619884-9619903 | MS.gene046193:CDS | 65.0% | |
| TTCGACGCGTCGTCGGGAAC+GGG | - | chr3.3:9619885-9619904 | MS.gene046193:CDS | 65.0% | |
| !! | GGTGGTGGTGGTGGTGGTGA+TGG | - | chr3.3:9619925-9619944 | MS.gene046193:CDS | 65.0% |
| !! | TTTGCCGGTGGTGGTGGTGG+TGG | - | chr3.3:9619919-9619938 | MS.gene046193:CDS | 65.0% |
| CGTTCCCGACGACGCGTCGA+AGG | + | chr3.3:9619886-9619905 | None:intergenic | 70.0% | |
| GACGCGTCGTCGGGAACGGG+AGG | - | chr3.3:9619888-9619907 | MS.gene046193:CDS | 75.0% | |
| GCGTCGTCGGGAACGGGAGG+TGG | - | chr3.3:9619891-9619910 | MS.gene046193:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 9619652 | 9620773 | 9619652 | ID=MS.gene046193 |
| chr3.3 | mRNA | 9619652 | 9620773 | 9619652 | ID=MS.gene046193.t1;Parent=MS.gene046193 |
| chr3.3 | exon | 9620347 | 9620773 | 9620347 | ID=MS.gene046193.t1.exon1;Parent=MS.gene046193.t1 |
| chr3.3 | CDS | 9620347 | 9620773 | 9620347 | ID=cds.MS.gene046193.t1;Parent=MS.gene046193.t1 |
| chr3.3 | exon | 9619652 | 9619944 | 9619652 | ID=MS.gene046193.t1.exon2;Parent=MS.gene046193.t1 |
| chr3.3 | CDS | 9619652 | 9619944 | 9619652 | ID=cds.MS.gene046193.t1;Parent=MS.gene046193.t1 |
| Gene Sequence |
| Protein sequence |
