Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046210.t1 | RHN65650.1 | 89.2 | 334 | 18 | 7 | 1 | 327 | 1 | 323 | 2.50E-129 | 471.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046210.t1 | Q9LJG8 | 37.3 | 102 | 60 | 1 | 41 | 138 | 82 | 183 | 1.1e-11 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046210.t1 | A0A396IK94 | 89.2 | 334 | 18 | 7 | 1 | 327 | 1 | 323 | 1.8e-129 | 471.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene046210.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046210.t1 | MTR_3g014280 | 90.774 | 336 | 11 | 7 | 1 | 327 | 1 | 325 | 0.0 | 552 |
| MS.gene046210.t1 | MTR_1g037650 | 89.848 | 197 | 6 | 6 | 1 | 194 | 1 | 186 | 1.34e-109 | 317 |
| MS.gene046210.t1 | MTR_8g022290 | 25.079 | 315 | 160 | 11 | 30 | 307 | 58 | 333 | 5.48e-17 | 81.3 |
| MS.gene046210.t1 | MTR_2g016140 | 36.290 | 124 | 71 | 4 | 38 | 154 | 18 | 140 | 1.93e-16 | 79.0 |
| MS.gene046210.t1 | MTR_2g016140 | 36.290 | 124 | 71 | 4 | 38 | 154 | 18 | 140 | 3.11e-16 | 78.6 |
| MS.gene046210.t1 | MTR_1g061600 | 40.816 | 98 | 49 | 3 | 37 | 128 | 127 | 221 | 3.02e-15 | 76.6 |
| MS.gene046210.t1 | MTR_4g079960 | 35.354 | 99 | 56 | 2 | 41 | 131 | 29 | 127 | 2.62e-13 | 70.1 |
| MS.gene046210.t1 | MTR_4g079960 | 35.354 | 99 | 56 | 2 | 41 | 131 | 29 | 127 | 2.81e-13 | 69.7 |
| MS.gene046210.t1 | MTR_4g079960 | 35.354 | 99 | 56 | 2 | 41 | 131 | 29 | 127 | 3.74e-13 | 69.3 |
| MS.gene046210.t1 | MTR_5g017500 | 33.036 | 112 | 66 | 3 | 43 | 145 | 22 | 133 | 6.96e-12 | 64.7 |
| MS.gene046210.t1 | MTR_4g117990 | 29.839 | 124 | 80 | 1 | 14 | 130 | 15 | 138 | 7.21e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046210.t1 | AT3G54390 | 59.386 | 293 | 89 | 6 | 36 | 326 | 31 | 295 | 4.03e-102 | 302 |
| MS.gene046210.t1 | AT3G54390 | 59.386 | 293 | 89 | 6 | 36 | 326 | 47 | 311 | 4.57e-102 | 302 |
| MS.gene046210.t1 | AT3G10030 | 39.655 | 116 | 59 | 3 | 15 | 125 | 137 | 246 | 1.03e-17 | 84.3 |
| MS.gene046210.t1 | AT3G10030 | 38.655 | 119 | 62 | 3 | 15 | 128 | 137 | 249 | 1.29e-17 | 84.0 |
| MS.gene046210.t1 | AT3G14180 | 35.772 | 123 | 67 | 2 | 28 | 138 | 61 | 183 | 4.30e-16 | 79.0 |
| MS.gene046210.t1 | AT3G58630 | 25.606 | 289 | 178 | 8 | 39 | 307 | 22 | 293 | 2.18e-14 | 73.2 |
| MS.gene046210.t1 | AT3G58630 | 25.606 | 289 | 178 | 8 | 39 | 307 | 22 | 293 | 2.61e-14 | 73.2 |
| MS.gene046210.t1 | AT3G24860 | 40.698 | 86 | 47 | 2 | 43 | 127 | 65 | 147 | 6.81e-14 | 71.6 |
| MS.gene046210.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 39 | 128 | 20 | 109 | 1.24e-13 | 70.1 |
| MS.gene046210.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 39 | 128 | 20 | 109 | 1.25e-13 | 70.1 |
| MS.gene046210.t1 | AT5G05550 | 42.222 | 90 | 52 | 0 | 39 | 128 | 20 | 109 | 1.58e-13 | 69.7 |
| MS.gene046210.t1 | AT3G11100 | 43.333 | 90 | 49 | 2 | 39 | 128 | 18 | 105 | 9.17e-13 | 67.4 |
| MS.gene046210.t1 | AT2G44730 | 33.673 | 98 | 58 | 1 | 37 | 127 | 58 | 155 | 1.07e-11 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 3.3:-9228561 | None:intergenic |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 3.3:+9228451 | MS.gene046210:CDS |
| AGAAAACAAAACAATATTAT+TGG | 0.287424 | 3.3:+9228363 | MS.gene046210:CDS |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 3.3:-9230315 | None:intergenic |
| CAGCGCCGGCGTGCTGCTAT+CGG | 0.391787 | 3.3:-9230344 | None:intergenic |
| GTTGATTCATCATTGAGAAT+TGG | 0.394877 | 3.3:+9230661 | MS.gene046210:CDS |
| CTTGGTGATTCTTGTGATGT+TGG | 0.397582 | 3.3:-9228342 | None:intergenic |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 3.3:+9228710 | MS.gene046210:CDS |
| AATATTATTGGTAGTGGAAG+TGG | 0.411833 | 3.3:+9228375 | MS.gene046210:CDS |
| CAAAACTCACATGGATCAAA+TGG | 0.426625 | 3.3:+9228831 | MS.gene046210:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 3.3:+9228628 | MS.gene046210:CDS |
| TGAGGCAAAGAGAGGAGAAA+TGG | 0.461965 | 3.3:+9230555 | MS.gene046210:CDS |
| GGTGGAGGAACAACGGTACT+AGG | 0.465964 | 3.3:-9228795 | None:intergenic |
| CAAAACAATATTATTGGTAG+TGG | 0.466587 | 3.3:+9228369 | MS.gene046210:CDS |
| AAAACTCAAAGGACAGGATT+GGG | 0.468688 | 3.3:+9228491 | MS.gene046210:CDS |
| GGCTAGCAGAGGTGGTAGTA+AGG | 0.468988 | 3.3:+9230476 | MS.gene046210:CDS |
| GACTTGATCTTCTTCTTCGT+GGG | 0.486660 | 3.3:+9228664 | MS.gene046210:CDS |
| GATCTTCTTCTTCGTGGGAC+AGG | 0.486736 | 3.3:+9228669 | MS.gene046210:CDS |
| CAAAACTCAAAGGACAGGAT+TGG | 0.486927 | 3.3:+9228490 | MS.gene046210:CDS |
| TGAGTAGTTGTAATTGGTGG+AGG | 0.487992 | 3.3:-9228810 | None:intergenic |
| GGTGATTCTTGTGATGTTGG+AGG | 0.495652 | 3.3:-9228339 | None:intergenic |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 3.3:+9230452 | MS.gene046210:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 3.3:+9228452 | MS.gene046210:CDS |
| AGACTTGATCTTCTTCTTCG+TGG | 0.502001 | 3.3:+9228663 | MS.gene046210:CDS |
| GTGATTCTTGTGATGTTGGA+GGG | 0.504167 | 3.3:-9228338 | None:intergenic |
| ATACACAACTTGAGATTGCT+AGG | 0.505134 | 3.3:+9230605 | MS.gene046210:CDS |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 3.3:+9230432 | MS.gene046210:CDS |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 3.3:+9228589 | MS.gene046210:CDS |
| AAGGTCAGAACAAACAAGAA+TGG | 0.526165 | 3.3:+9230495 | MS.gene046210:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 3.3:+9230433 | MS.gene046210:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 3.3:+9230318 | MS.gene046210:CDS |
| CAGAAAACAATAACAACAAG+AGG | 0.538998 | 3.3:+9230413 | MS.gene046210:CDS |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.548999 | 3.3:+9230468 | MS.gene046210:CDS |
| TAGAGCAAAACTCAAAGGAC+AGG | 0.549608 | 3.3:+9228485 | MS.gene046210:CDS |
| ATTCATCATTGAGAATTGGA+AGG | 0.555241 | 3.3:+9230665 | MS.gene046210:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 3.3:+9228705 | MS.gene046210:CDS |
| GAAGATGAGAGTTGAAGCTG+AGG | 0.581651 | 3.3:+9230537 | MS.gene046210:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 3.3:+9230465 | MS.gene046210:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 3.3:-9230334 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 3.3:+9228411 | MS.gene046210:CDS |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 3.3:+9228480 | MS.gene046210:CDS |
| GTTGAAGCTGAGGCAAAGAG+AGG | 0.612939 | 3.3:+9230547 | MS.gene046210:CDS |
| ACAACTACTCAAAACTCACA+TGG | 0.614879 | 3.3:+9228822 | MS.gene046210:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 3.3:+9228851 | MS.gene046210:CDS |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 3.3:+9230339 | MS.gene046210:CDS |
| ACAACGGTACTAGGAGCTAG+TGG | 0.667382 | 3.3:-9228786 | None:intergenic |
| TGTAATTGGTGGAGGAACAA+CGG | 0.676835 | 3.3:-9228802 | None:intergenic |
| AGATCAAGTCTAGAATACAA+AGG | 0.687202 | 3.3:-9228651 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 3.3:+9230455 | MS.gene046210:CDS |
| GCATGTGACATAACAAGTGG+TGG | 0.722377 | 3.3:-9228744 | None:intergenic |
| TGTGCATGTGACATAACAAG+TGG | 0.766342 | 3.3:-9228747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATAATATATATAT+AGG | - | chr3.3:9229889-9229908 | None:intergenic | 0.0% |
| !!! | AAAATAAATAATTTTTTTTA+GGG | - | chr3.3:9229544-9229563 | None:intergenic | 0.0% |
| !!! | TAAAATAAATAATTTTTTTT+AGG | - | chr3.3:9229545-9229564 | None:intergenic | 0.0% |
| !! | TATAATTTAAAGAAAATGTA+AGG | + | chr3.3:9229496-9229515 | MS.gene046210:intron | 10.0% |
| !!! | AGAATATTGTTTTTTTTTAA+AGG | + | chr3.3:9229443-9229462 | MS.gene046210:intron | 10.0% |
| !!! | AGACTTTAATTTTTTATTTA+TGG | + | chr3.3:9229047-9229066 | MS.gene046210:intron | 10.0% |
| !!! | TTTAAATATTGATAGTATAA+AGG | + | chr3.3:9230047-9230066 | MS.gene046210:intron | 10.0% |
| !! | AGAAAACAAAACAATATTAT+TGG | + | chr3.3:9228363-9228382 | MS.gene046210:CDS | 15.0% |
| !! | CATAAAACAAAAACAAAAAT+TGG | - | chr3.3:9229253-9229272 | None:intergenic | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr3.3:9229823-9229842 | None:intergenic | 15.0% |
| !!! | ATAATATTGTTTTGTTTTCT+TGG | - | chr3.3:9228363-9228382 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAAAGAGTTTGA+TGG | + | chr3.3:9229555-9229574 | MS.gene046210:intron | 15.0% |
| !!! | TGAAAAAATGAATATTTTCA+TGG | - | chr3.3:9230112-9230131 | None:intergenic | 15.0% |
| !! | ATAATAAGCAAATTGTTAAG+TGG | + | chr3.3:9229735-9229754 | MS.gene046210:intron | 20.0% |
| !! | CTGAAAATTTAATTACAATG+TGG | + | chr3.3:9230220-9230239 | MS.gene046210:intron | 20.0% |
| !! | GACAGTGAAATATATATAAT+TGG | - | chr3.3:9230178-9230197 | None:intergenic | 20.0% |
| !! | TAATAAGCAAATTGTTAAGT+GGG | + | chr3.3:9229736-9229755 | MS.gene046210:intron | 20.0% |
| !! | TTAATGCATATATAGTCTAA+TGG | - | chr3.3:9229775-9229794 | None:intergenic | 20.0% |
| !! | TTTATGATTTCATATTTGAC+AGG | + | chr3.3:9230264-9230283 | MS.gene046210:intron | 20.0% |
| !!! | AAGCAATTTTATAATTTGGA+AGG | - | chr3.3:9228977-9228996 | None:intergenic | 20.0% |
| !!! | CAACAAGCAATTTTATAATT+TGG | - | chr3.3:9228981-9229000 | None:intergenic | 20.0% |
| !!! | TATTTTTAGGACTAAAAAGT+AGG | + | chr3.3:9229019-9229038 | MS.gene046210:intron | 20.0% |
| ! | AAAACTCACGACTAAAAATA+AGG | + | chr3.3:9229141-9229160 | MS.gene046210:intron | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr3.3:9228705-9228724 | MS.gene046210:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr3.3:9228710-9228729 | MS.gene046210:CDS | 25.0% |
| ! | ATAAAAAATAGTGCATGTGT+TGG | + | chr3.3:9229907-9229926 | MS.gene046210:intron | 25.0% |
| ! | ATGATCATAGAATGAACAAA+AGG | - | chr3.3:9229101-9229120 | None:intergenic | 25.0% |
| ! | CAAAACAATATTATTGGTAG+TGG | + | chr3.3:9228369-9228388 | MS.gene046210:CDS | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr3.3:9228452-9228471 | MS.gene046210:CDS | 25.0% |
| ! | TTCACATGCATAATAGTATA+TGG | - | chr3.3:9229836-9229855 | None:intergenic | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr3.3:9228451-9228470 | MS.gene046210:CDS | 25.0% |
| !! | GTTTTATATGACTTTACCAT+GGG | - | chr3.3:9230085-9230104 | None:intergenic | 25.0% |
| !! | TGATAGTATAAAGGTACAAA+AGG | + | chr3.3:9230056-9230075 | MS.gene046210:intron | 25.0% |
| !!! | AGTTTTATATGACTTTACCA+TGG | - | chr3.3:9230086-9230105 | None:intergenic | 25.0% |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr3.3:9228480-9228499 | MS.gene046210:CDS | 30.0% | |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr3.3:9228403-9228422 | MS.gene046210:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr3.3:9230433-9230452 | MS.gene046210:CDS | 30.0% | |
| AGTAGAAAAAGAAGAAGCAA+TGG | - | chr3.3:9229383-9229402 | None:intergenic | 30.0% | |
| ATAGAATGCTCCTGAATAAT+TGG | + | chr3.3:9229965-9229984 | MS.gene046210:intron | 30.0% | |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr3.3:9230318-9230337 | None:intergenic | 30.0% | |
| ATTCATCATTGAGAATTGGA+AGG | + | chr3.3:9230665-9230684 | MS.gene046210:CDS | 30.0% | |
| CAGAAAACAATAACAACAAG+AGG | + | chr3.3:9230413-9230432 | MS.gene046210:CDS | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr3.3:9230318-9230337 | MS.gene046210:CDS | 30.0% | |
| TGTATAGCTAAATGTAGCAA+TGG | - | chr3.3:9229799-9229818 | None:intergenic | 30.0% | |
| ! | AGATCAAGTCTAGAATACAA+AGG | - | chr3.3:9228654-9228673 | None:intergenic | 30.0% |
| ! | GTTGATTCATCATTGAGAAT+TGG | + | chr3.3:9230661-9230680 | MS.gene046210:CDS | 30.0% |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr3.3:9228601-9228620 | None:intergenic | 30.0% |
| !! | AATATTATTGGTAGTGGAAG+TGG | + | chr3.3:9228375-9228394 | MS.gene046210:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr3.3:9228851-9228870 | MS.gene046210:CDS | 30.0% |
| !! | TTGTTGATGACCAATTATTC+AGG | - | chr3.3:9229978-9229997 | None:intergenic | 30.0% |
| !! | TTTTGAGTAGTTGTAATTGG+TGG | - | chr3.3:9228816-9228835 | None:intergenic | 30.0% |
| !!! | GAGTTTTGAGTAGTTGTAAT+TGG | - | chr3.3:9228819-9228838 | None:intergenic | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr3.3:9228719-9228738 | MS.gene046210:CDS | 30.0% |
| AAAACTCAAAGGACAGGATT+GGG | + | chr3.3:9228491-9228510 | MS.gene046210:CDS | 35.0% | |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr3.3:9228411-9228430 | MS.gene046210:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr3.3:9230495-9230514 | MS.gene046210:CDS | 35.0% | |
| ACAACTACTCAAAACTCACA+TGG | + | chr3.3:9228822-9228841 | MS.gene046210:CDS | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr3.3:9228589-9228608 | MS.gene046210:CDS | 35.0% | |
| ATACACAACTTGAGATTGCT+AGG | + | chr3.3:9230605-9230624 | MS.gene046210:CDS | 35.0% | |
| CAAAACTCACATGGATCAAA+TGG | + | chr3.3:9228831-9228850 | MS.gene046210:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr3.3:9228628-9228647 | MS.gene046210:CDS | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr3.3:9230432-9230451 | MS.gene046210:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr3.3:9228564-9228583 | None:intergenic | 35.0% | |
| !! | ATAGGATGAGAGTGCTAATT+TGG | - | chr3.3:9229871-9229890 | None:intergenic | 35.0% |
| !! | ATTCTATGTAGAAGCATCCT+AGG | - | chr3.3:9229952-9229971 | None:intergenic | 35.0% |
| AAGGTACAAAAGGTTTCCCA+TGG | + | chr3.3:9230066-9230085 | MS.gene046210:intron | 40.0% | |
| ACGAGCAAAGAAGCAAAAAG+AGG | + | chr3.3:9230380-9230399 | MS.gene046210:CDS | 40.0% | |
| AGACTTGATCTTCTTCTTCG+TGG | + | chr3.3:9228663-9228682 | MS.gene046210:CDS | 40.0% | |
| AGTACCTTAGTGCTTTACCT+AGG | + | chr3.3:9229932-9229951 | MS.gene046210:intron | 40.0% | |
| CAAAACTCAAAGGACAGGAT+TGG | + | chr3.3:9228490-9228509 | MS.gene046210:CDS | 40.0% | |
| CTTTGCATATAGAGTGTGTG+AGG | - | chr3.3:9229585-9229604 | None:intergenic | 40.0% | |
| GAAGAAGCAATGGTCTTCAT+AGG | - | chr3.3:9229373-9229392 | None:intergenic | 40.0% | |
| GACTTGATCTTCTTCTTCGT+GGG | + | chr3.3:9228664-9228683 | MS.gene046210:CDS | 40.0% | |
| GTGATTCTTGTGATGTTGGA+GGG | - | chr3.3:9228341-9228360 | None:intergenic | 40.0% | |
| TAGAGCAAAACTCAAAGGAC+AGG | + | chr3.3:9228485-9228504 | MS.gene046210:CDS | 40.0% | |
| TGAGTAGTTGTAATTGGTGG+AGG | - | chr3.3:9228813-9228832 | None:intergenic | 40.0% | |
| TGTAATTGGTGGAGGAACAA+CGG | - | chr3.3:9228805-9228824 | None:intergenic | 40.0% | |
| TGTGCATGTGACATAACAAG+TGG | - | chr3.3:9228750-9228769 | None:intergenic | 40.0% | |
| ! | CAAGTGAGACAATAACTTGC+AGG | + | chr3.3:9229676-9229695 | MS.gene046210:intron | 40.0% |
| ! | CTTGGTGATTCTTGTGATGT+TGG | - | chr3.3:9228345-9228364 | None:intergenic | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr3.3:9230455-9230474 | MS.gene046210:CDS | 40.0% |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr3.3:9230452-9230471 | MS.gene046210:CDS | 40.0% |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr3.3:9230537-9230556 | MS.gene046210:CDS | 45.0% | |
| GCATGTGACATAACAAGTGG+TGG | - | chr3.3:9228747-9228766 | None:intergenic | 45.0% | |
| GGTGATTCTTGTGATGTTGG+AGG | - | chr3.3:9228342-9228361 | None:intergenic | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr3.3:9230555-9230574 | MS.gene046210:CDS | 45.0% | |
| ! | GCATCCTAGGTAAAGCACTA+AGG | - | chr3.3:9229939-9229958 | None:intergenic | 45.0% |
| !! | AATGAAATAATTTATATATT+CGG | + | chr3.3:9229705-9229724 | MS.gene046210:intron | 5.0% |
| !! | TATAATGATTAAAATATAAT+TGG | - | chr3.3:9228941-9228960 | None:intergenic | 5.0% |
| !!! | AAGTTTTTTATTTTATTTTT+AGG | + | chr3.3:9229006-9229025 | MS.gene046210:intron | 5.0% |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr3.3:9230465-9230484 | MS.gene046210:CDS | 50.0% | |
| ACAACGGTACTAGGAGCTAG+TGG | - | chr3.3:9228789-9228808 | None:intergenic | 50.0% | |
| GATCTTCTTCTTCGTGGGAC+AGG | + | chr3.3:9228669-9228688 | MS.gene046210:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr3.3:9230547-9230566 | MS.gene046210:CDS | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr3.3:9230337-9230356 | None:intergenic | 50.0% |
| !! | TCTTTTTCGCTGTACAGCGC+CGG | - | chr3.3:9230361-9230380 | None:intergenic | 50.0% |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr3.3:9230468-9230487 | MS.gene046210:CDS | 55.0% | |
| GGCTAGCAGAGGTGGTAGTA+AGG | + | chr3.3:9230476-9230495 | MS.gene046210:CDS | 55.0% | |
| GGTGGAGGAACAACGGTACT+AGG | - | chr3.3:9228798-9228817 | None:intergenic | 55.0% | |
| GGAAACCGATAGCAGCACGC+CGG | + | chr3.3:9230339-9230358 | MS.gene046210:CDS | 60.0% | |
| !! | CAGCGCCGGCGTGCTGCTAT+CGG | - | chr3.3:9230347-9230366 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 9228297 | 9230693 | 9228297 | ID=MS.gene046210 |
| chr3.3 | mRNA | 9228297 | 9230693 | 9228297 | ID=MS.gene046210.t1;Parent=MS.gene046210 |
| chr3.3 | exon | 9228297 | 9228872 | 9228297 | ID=MS.gene046210.t1.exon1;Parent=MS.gene046210.t1 |
| chr3.3 | CDS | 9228297 | 9228872 | 9228297 | ID=cds.MS.gene046210.t1;Parent=MS.gene046210.t1 |
| chr3.3 | exon | 9230286 | 9230693 | 9230286 | ID=MS.gene046210.t1.exon2;Parent=MS.gene046210.t1 |
| chr3.3 | CDS | 9230286 | 9230693 | 9230286 | ID=cds.MS.gene046210.t1;Parent=MS.gene046210.t1 |
| Gene Sequence |
| Protein sequence |
