AlfalfaGEDB | MS.gene046336

M. sativa cultivar XinJiangDaYe / MS.gene046336

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046336.t1	KEH32925.1	87.7	375	42	2	1	371	1	375	1.80E-187	665.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046336.t1	Q9FFW5	46.4	293	144	5	42	321	327	619	2.4e-63	244.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046336.t1	A0A072V466	87.7	375	42	2	1	371	1	375	1.3e-187	665.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046336.t1	MTR_3g011630	89.600	375	35	2	1	371	1	375	0.0	692
MS.gene046336.t1	MTR_3g011730	64.545	330	115	2	24	352	284	612	8.65e-151	442
MS.gene046336.t1	MTR_8g042370	65.595	311	104	3	2	312	63	370	2.16e-145	418
MS.gene046336.t1	MTR_0205s0040	48.193	332	168	4	6	334	810	1140	9.22e-95	310
MS.gene046336.t1	MTR_0205s0040	46.067	356	180	6	3	348	276	629	2.62e-88	292
MS.gene046336.t1	MTR_0205s0040	38.507	335	146	7	15	346	1255	1532	1.50e-53	191
MS.gene046336.t1	MTR_8g016120	48.837	301	146	4	24	316	375	675	1.31e-88	283
MS.gene046336.t1	MTR_2g100290	48.173	301	148	4	24	316	377	677	6.03e-88	280
MS.gene046336.t1	MTR_8g101670	48.173	301	148	4	24	316	374	674	9.52e-88	279
MS.gene046336.t1	MTR_8g101670	48.797	291	141	4	24	306	362	652	2.72e-86	275

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046336.t1	AT5G56790	49.502	301	144	5	24	316	360	660	2.14e-89	283
MS.gene046336.t1	AT1G55200	48.173	301	148	4	24	316	349	649	1.08e-86	276
MS.gene046336.t1	AT1G55200	48.173	301	148	4	24	316	349	649	1.08e-86	276
MS.gene046336.t1	AT1G55200	48.173	301	148	4	24	316	349	649	1.08e-86	276
MS.gene046336.t1	AT1G55200	48.173	301	148	4	24	316	349	649	1.08e-86	276
MS.gene046336.t1	AT3G13690	47.841	301	149	4	24	316	381	681	2.09e-85	275
MS.gene046336.t1	AT3G13690	47.841	301	149	4	24	316	381	681	2.09e-85	275
MS.gene046336.t1	AT3G13690	47.841	301	149	4	24	316	381	681	2.09e-85	275
MS.gene046336.t1	AT5G38560	44.762	315	154	7	22	323	314	621	1.93e-76	250
MS.gene046336.t1	AT1G23540	43.354	316	159	6	12	316	338	644	3.62e-75	247

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 70 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATGTATATTCTTT+TGG	0.214358	3.4:-7875084	MS.gene046336:CDS
AACCTCTATGCTGGCAAGAT+AGG	0.362533	3.4:-7875675	MS.gene046336:CDS
AAGAACTTTCTATCAGAAGG+TGG	0.602551	3.4:-7876137	MS.gene046336:CDS
AATAGAATGTCCTGGAAATC+TGG	0.355814	3.4:-7875151	MS.gene046336:CDS
AATGGTGATAGTGGAAATAA+TGG	0.385377	3.4:-7873203	MS.gene046336:intron
ACAAGAGACCAAAACTTGAT+TGG	0.420340	3.4:-7876217	MS.gene046336:CDS
ACCCTATCTTGCCAGCATAG+AGG	0.538973	3.4:+7875673	None:intergenic
ACCTCTATGCTGGCAAGATA+GGG	0.493446	3.4:-7875674	MS.gene046336:CDS
ACCTTCCTCTATATGCATTA+AGG	0.281208	3.4:+7873319	None:intergenic
ACTACAGACAAAAGACTTGG+AGG	0.523358	3.4:-7875027	MS.gene046336:CDS

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATATCCTAGGAATTTCGAT+TGG	-	chr3.4:7874449-7874468	MS.gene046336:intron	30.0%
ACAGATAAATAAACACACTC+AGG	+	chr3.4:7874398-7874417	None:intergenic	30.0%
ATATGACATGACAAGAACAA+AGG	+	chr3.4:7875404-7875423	None:intergenic	30.0%
CATTAAAATGCTAACAAACG+TGG	-	chr3.4:7874001-7874020	MS.gene046336:intron	30.0%
CTAAGTTGTTGAATGAAGAT+CGG	-	chr3.4:7874805-7874824	MS.gene046336:intron	30.0%
CTCATAGGTGTTAATATTGA+TGG	-	chr3.4:7876150-7876169	MS.gene046336:CDS	30.0%
GAAAATATTGTCATGTTGCT+TGG	-	chr3.4:7872901-7872920	MS.gene046336:intron	30.0%
GACCAACCTTAAAAATAAAG+AGG	-	chr3.4:7873633-7873652	MS.gene046336:intron	30.0%
GGAACACAAACTAATGATTA+CGG	+	chr3.4:7874377-7874396	None:intergenic	30.0%
GTTTATGAATATGTCTGCAA+TGG	-	chr3.4:7872955-7872974	MS.gene046336:intron	30.0%

Showing 1 to 10 of 189 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	7872583	7876327	7872583	ID=MS.gene046336
chr3.4	mRNA	7872583	7876327	7872583	ID=MS.gene046336.t1;Parent=MS.gene046336
chr3.4	exon	7875910	7876327	7875910	ID=MS.gene046336.t1.exon1;Parent=MS.gene046336.t1
chr3.4	CDS	7875910	7876327	7875910	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1
chr3.4	exon	7875561	7875709	7875561	ID=MS.gene046336.t1.exon2;Parent=MS.gene046336.t1
chr3.4	CDS	7875561	7875709	7875561	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1
chr3.4	exon	7875008	7875223	7875008	ID=MS.gene046336.t1.exon3;Parent=MS.gene046336.t1
chr3.4	CDS	7875008	7875223	7875008	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1
chr3.4	exon	7874274	7874423	7874274	ID=MS.gene046336.t1.exon4;Parent=MS.gene046336.t1
chr3.4	CDS	7874274	7874423	7874274	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1
chr3.4	exon	7873204	7873351	7873204	ID=MS.gene046336.t1.exon5;Parent=MS.gene046336.t1
chr3.4	CDS	7873204	7873351	7873204	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1
chr3.4	exon	7872583	7872677	7872583	ID=MS.gene046336.t1.exon6;Parent=MS.gene046336.t1
chr3.4	CDS	7872583	7872677	7872583	ID=cds.MS.gene046336.t1;Parent=MS.gene046336.t1

Gene Sequence

>MS.gene046336

ATGTCTCTCACTCATCATAACAACCATGAAGAACATCATCAAATAGTTGAACAAACATCAGAGAATTCTGTTTGTTCAATGTGCTACAACAAGAGACCAAAACTTGATTGGACAAGAAGAGACTTCACATATGCTGAATTGCATGCAGCAACACAAGGTTTTGCTATAAAGAACTTTCTATCAGAAGGTGGATTTGGTTCTGTCTATAAAGGGGAGATTCATGGACAGAAGATTGCTGTTAAACAATGTTTACATGCAAGTCACAAACAAGAGAAGGAGTTTAAGTCTGAAGTTGATGCATTAAGCAAAGCAAGACATGAAAATATTGTCATGTTGCTTGGATTATGTTCTGAAGGAAATCATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTAGACCAACATTTATCACGTATGATATGTAAAAATAAAACCTTAGCAAACATATGCGTTCATGCATTTCCTGATTATGCTTGCAGTTACCCTGCAAATGACTAATTGCAGGAAAATACGGCTGCGATGCCAGATACCTCAATACCCTTTATTTCTGTTTACTTTAAAGTCTAAATTTACAATAAGGAGATACTCACTTTGAATACTATTATGATGCAGAATACTCTCGTAAACCTCTATGCTGGCAAGATAGGGTGAAAGTAGCTAATGGAGCTGCCAAAGGATTGCTTTACCTTCATCAGAACAACATCATACATAGAGATATAAAACCAAACAACATTCTTCTGACACATGATTATGAAGCTATGGTAATCTTATTAACATAATTAAATTTTCTTTCATATAGATTTAACATAATCAGATGTGGAATATTGCTATATTTCTTTCATATACTTACAACAAGTAGACATGTGCATTAAGTTTTTTAGAATATAAATAAAGAATTCAATTGATATGCACTAACATCGTTTTACACTATCAATCAATCATAATCATTGGATCATTAAAAATATTTGACTTAAATCATATTTACTTTAAAAGTCATACAAGCGAAGGTTTGTGATTAATTTACATTTTAAAAAGTTACACCGTGACCAACCTTAAAAATAAAGAGGGAGAACTAAATTACTTCTATGTTCTTCTAAGCTGGGAGATTTCGGTTTGGCTAAAATTGCAAGTGAAGAATTCTCATGCTCAATAGAATGTCCTGGAAATCTGGCATATTGGGCACCAGAATATGCTGCATATGGTAAAGTATCAAATAAAACAGATGTATATTCTTTTGGAGTGGTTCTTGTTGAGCTAATAACTGGAATGAGGACTACAGACAAAAGACTTGGAGGAAAGAGTCTAGTAGGATGGGTAAGAAACTCAATGCTATTTGAAAGTACATACATGATGCAATGTAATACTTGTGATCGTGATTCTAATTTGCGGTTATGTTGGAAATCTTGATATTGCATTAAAATGCTAACAAACGTGGCCATTGCAGCCGCAATTGCAATTGAAGGCCACAACTTAGAACTATGCTTGTGATTTCATTTTATTATGTATGCTTGCTTACTTTAATTAGCCTTTATTATTTTTCATGTACTTGGGAGGAAGTTTAAGGTTACGAAAAAGTTTATCAAGATATGTATTCGTCGAGTATGGCTCATTTTCACTAATAAGTAGGTATGCACTTGAATGTAGCGATGCGGAGTGCGGGATAAACATGTAATCTGGATTGTTGTTTTAAACATTGCATTGTACTCTATAGCTCTAAGAATTGCATAATCAAGAAACTATAGCATTCAGTCTGCTGTCAGAGACGTAAGCACAATAATCCGACCTCCGTAATCATTAGTTTGTGTTCCTGAGTGTGTTTATTTATCTGTTTTTCTGTTTTAAGAATAATTTAAGAAGTTCAATATCCTAGGAATTTCGATTGGTCATTTTTTTCCCAGGCTAGACCACTACTAAGAGAAGGGAATTGTCAAAAACTTGTTGATGGAAGGATAATGGATTCACATCATTGTCATCAAATCTTTTGGATGAGCCGTCTAGCTGGAAATTGTCTAAACAAAGATCCTCATAAACGATTGGATATGAATACAGTAAGTCTGCACTTCTACTATTTCTTTATCTTCCACTTTCATATTGTCATATCTAGCTGCAGGACTTCATCTTGGGAGTTTACATGACACAATCGAAGCTTAACTTTATTTTGGAAATGGATTTGATAGAACAAATTTTTTTGTGCACAATCACTGCATTCAATAGATCTAAGTTGTTGAATGAAGATCGGACAGTCATACCAATATTTTGTATCTTAGATCCGATTTGGCAAATTTATAAATGCACCGTCCAATCTTTTAGTCACCAGATGAGATCTATTGATATTAGAAACCTGTGAAGCAATGACACAGACACGGACAAGGCACTGACACTAACATGTTGAAGGTGGTAGTAACTTGAAAAAAAATGAAAGAATTGAATGTAATCTTGTGTATCGGTGTCATCTTGATGTCGGACACGACTTTAATCTGAAGTTTTGGTGCTACATAGGTATCAACTATGTGGATTTTTCTGCTGCAGATAATAGGCATGTTAGAAATTAGGTAGGATGATCATTTAACACTAGTAAACAAGAACAATTAATCTACTACATATAGCTTGATTCGAGTTTCATCATAACTTGTTAACAAAGAAACACACACACTTCAAAATAGTAAGTCTAATATGTCATAACTATCAGACACTTATAATTATGTTTTACAGTTTTTCATTGTTATTTCTCTCTTTTGATTTTTTCTATTGTAATAAATTTATACTAATTTCAAGTGATGTATTGTCTTACAATTTTTAAATCTATCAGATTCCTTTGTTCTTGTCATGTCATATATCTGATGTTCTTAACTTCCTAAGTACACTCCCTTCAACAACAAAAAAAATCTTGCCAAGTACACTACATATTTTCCATATAATAAAAAATATATCTTCTATTGTGATTTTTTTTATACATATTATTACTTCTAGGTGGTCAAAGCCTTAATGCATATAGAGGAAGGTTGCAGTAGCTGCATTGTTGAAAAAGACAGTAGTACCCTTCCCATGTCAGACTATTCTAAATCAAAAGATGATATGCAGGACTCTTCACAATCAAATGGTGATAGTGGAAATAATGGTAGTAGTAGTTCCAGGTCCAACACAGCATATTGCTACTATAAATCTAGCAAAAATTAAAAATTTTTCTGTTCTTGGGATGTGTTTGGATTGACTTATTGGAGCTTATCTACTGAAAGAAGTTATTTTTAGCTTATTTCTATAAGCTCTTTAGCATAGCTTATGAAAACAGCTTACCTGAAAGCAATTTGATTTTTTTATCTCTTGTTAAAAAAAAGCTTATACATAAGCAATTATATGATAAACACCTATACTATAAGTATTTATTTAAACTGTTTATCCAAATTTGGCTACGCCCACGATACCGTTTTCCATGCATCATTATTTGCAGACGATACCATCTTTTTGTGTAAAGAATCTCCGGATAATTTGTGGAGCTTAAAAACCATACTCATAAGCTTTGAGTTAGTATCGGGTTTGAGAGTCGATTTTCACAAAAGTAAGCTCATAGGTGTTAATATTGATGGTGCATTTCTAGAGGCTGCCTCAATTTTCTAGCATGTCAGATTGAACCTATTCCATTCAAGTTTTTGGGCATCCCGGTTGGAGCAAATCCGAGGCGTTGTTCGACATGGAATCCAATTATAGAACTCATGCAAAAGAAGCTTTCAAGCCGGAATGA

Protein sequence

>MS.gene046336.t1

MSLTHHNNHEEHHQIVEQTSENSVCSMCYNKRPKLDWTRRDFTYAELHAATQGFAIKNFLSEGGFGSVYKGEIHGQKIAVKQCLHASHKQEKEFKSEVDALSKARHENIVMLLGLCSEGNHRLLVYEYVCNGSLDQHLSQYSRKPLCWQDRVKVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDYEAMLGDFGLAKIASEEFSCSIECPGNLAYWAPEYAAYGKVSNKTDVYSFGVVLVELITGMRTTDKRLGGKSLVGWARPLLREGNCQKLVDGRIMDSHHCHQIFWMSRLAGNCLNKDPHKRLDMNTVVKALMHIEEGCSSCIVEKDSSTLPMSDYSKSKDDMQDSSQSNGDSGNNVFGHPGWSKSEALFDMESNYRTHAKEAFKPE