AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04638

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04638.t1 MTR_7g093430 95.593 295 11 1 1 293 1 295 0.0 577
MS.gene04638.t1 MTR_1g054285 68.841 276 76 6 1 273 1 269 9.50e-117 338
MS.gene04638.t1 MTR_2g061030 80.263 152 20 2 135 283 181 325 2.41e-77 239
MS.gene04638.t1 MTR_4g100550 64.362 188 57 2 86 272 57 235 1.96e-73 227
MS.gene04638.t1 MTR_5g013010 62.051 195 66 4 86 279 71 258 5.14e-70 219
MS.gene04638.t1 MTR_4g097600 77.600 125 26 1 148 270 115 239 1.84e-65 206
MS.gene04638.t1 MTR_8g006705 65.341 176 48 3 104 269 86 258 3.54e-65 206
MS.gene04638.t1 MTR_5g014890 67.626 139 45 0 149 287 114 252 1.89e-64 204
MS.gene04638.t1 MTR_1g017090 62.590 139 50 1 157 293 129 267 1.55e-55 181
MS.gene04638.t1 MTR_4g084750 65.323 124 36 2 153 269 59 182 3.12e-48 159
MS.gene04638.t1 MTR_3g103590 67.939 131 40 2 149 278 136 265 8.16e-48 162
MS.gene04638.t1 MTR_2g038625 56.618 136 55 2 136 270 63 195 2.21e-40 140
MS.gene04638.t1 MTR_2g038580 56.618 136 55 2 136 270 63 195 2.21e-40 140
MS.gene04638.t1 MTR_4g126900 58.772 114 43 1 160 269 90 203 1.41e-35 127
MS.gene04638.t1 MTR_5g013010 54.839 124 49 3 86 209 71 187 1.44e-29 111
MS.gene04638.t1 MTR_6g007647 40.146 137 80 1 155 291 30 164 1.58e-19 85.9
MS.gene04638.t1 MTR_7g010020 44.737 114 59 1 139 248 61 174 1.76e-19 86.3
MS.gene04638.t1 MTR_1g061660 44.330 97 54 0 154 250 55 151 2.40e-19 85.1
MS.gene04638.t1 MTR_6g007647 40.146 137 80 1 155 291 64 198 3.42e-19 85.9
MS.gene04638.t1 MTR_5g039000 45.283 106 54 1 150 251 69 174 3.08e-18 83.2
MS.gene04638.t1 MTR_4g107650 48.077 104 52 1 144 245 79 182 5.11e-18 83.2
MS.gene04638.t1 MTR_8g468210 41.085 129 69 3 130 251 46 174 5.68e-18 82.4
MS.gene04638.t1 MTR_6g011610 39.726 146 77 3 110 244 44 189 2.79e-17 80.1
MS.gene04638.t1 MTR_5g038280 47.872 94 42 1 158 244 87 180 4.30e-17 80.5
MS.gene04638.t1 MTR_7g103340 41.935 93 54 0 153 245 58 150 6.43e-17 78.6
MS.gene04638.t1 MTR_6g011610 45.946 111 51 2 143 244 60 170 8.84e-17 78.6
MS.gene04638.t1 MTR_3g080100 45.283 106 49 2 149 245 9 114 1.45e-16 77.0
MS.gene04638.t1 MTR_3g080100 45.283 106 49 2 149 245 48 153 2.45e-16 77.4
MS.gene04638.t1 MTR_8g469430 45.745 94 44 1 158 244 89 182 4.89e-16 77.0
MS.gene04638.t1 MTR_8g089895 43.750 112 53 2 141 245 40 148 2.60e-15 75.1
MS.gene04638.t1 MTR_3g086790 35.294 170 89 4 119 279 33 190 5.14e-15 74.3
MS.gene04638.t1 MTR_8g026960 42.683 82 47 0 162 243 38 119 5.10e-12 64.7
MS.gene04638.t1 MTR_3g092150 41.935 93 47 1 161 246 41 133 7.87e-12 64.3
MS.gene04638.t1 MTR_5g029320 30.769 130 89 1 125 254 60 188 3.78e-11 63.9
MS.gene04638.t1 MTR_2g101720 35.246 122 60 1 161 282 145 247 7.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04638.t1 AT5G06710 51.713 321 91 10 1 273 1 305 5.77e-87 263
MS.gene04638.t1 AT5G47370 55.217 230 86 7 52 271 22 244 8.19e-70 218
MS.gene04638.t1 AT4G37790 81.967 122 22 0 149 270 117 238 4.02e-69 216
MS.gene04638.t1 AT3G60390 50.562 267 83 8 42 269 18 274 7.03e-68 214
MS.gene04638.t1 AT2G44910 49.237 262 98 8 46 272 17 278 7.50e-67 211
MS.gene04638.t1 AT2G22800 77.049 122 28 0 149 270 104 225 3.91e-65 206
MS.gene04638.t1 AT4G16780 62.857 175 57 3 106 272 70 244 3.94e-65 206
MS.gene04638.t1 AT4G17460 54.393 239 80 9 52 271 21 249 1.17e-63 202
MS.gene04638.t1 AT2G01430 61.029 136 51 2 135 270 116 249 1.37e-47 160
MS.gene04638.t1 AT5G06710 42.412 257 84 10 1 209 1 241 8.96e-40 140
MS.gene04638.t1 AT1G70920 58.015 131 46 2 142 270 51 174 1.31e-39 137
MS.gene04638.t1 AT1G70920 58.015 131 46 2 142 270 21 144 1.43e-39 137
MS.gene04638.t1 AT2G01430 62.667 75 28 0 135 209 116 190 1.46e-23 96.3
MS.gene04638.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.24e-18 83.2
MS.gene04638.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.24e-18 83.2
MS.gene04638.t1 AT1G26960 39.744 156 81 5 143 291 57 206 2.50e-18 82.8
MS.gene04638.t1 AT1G69780 45.872 109 56 2 140 245 64 172 3.77e-18 83.2
MS.gene04638.t1 AT2G36610 42.157 102 51 1 153 246 66 167 3.64e-17 78.2
MS.gene04638.t1 AT5G03790 39.823 113 67 1 153 264 72 184 4.29e-17 79.0
MS.gene04638.t1 AT3G01220 42.857 119 56 2 144 250 65 183 6.12e-17 79.7
MS.gene04638.t1 AT5G15150 45.000 120 55 4 136 247 92 208 1.83e-16 78.6
MS.gene04638.t1 AT3G01470 46.739 92 49 0 158 249 68 159 7.63e-16 76.3
MS.gene04638.t1 AT2G22430 45.455 99 50 1 154 248 58 156 4.68e-15 74.3
MS.gene04638.t1 AT5G65310 42.857 98 49 1 155 245 69 166 6.37e-15 74.3
MS.gene04638.t1 AT5G65310 42.857 98 49 1 155 245 51 148 7.26e-15 73.9
MS.gene04638.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.73e-14 70.9
MS.gene04638.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.73e-14 70.9
MS.gene04638.t1 AT1G27045 56.061 66 29 0 158 223 17 82 1.98e-14 70.5
MS.gene04638.t1 AT1G27045 56.061 66 29 0 158 223 68 133 2.28e-14 71.2
MS.gene04638.t1 AT1G27045 45.098 102 48 2 158 252 68 168 3.75e-14 71.2
MS.gene04638.t1 AT2G18550 45.361 97 52 1 148 244 52 147 5.12e-14 70.1
MS.gene04638.t1 AT4G40060 42.857 98 52 1 154 247 55 152 6.57e-14 70.9
MS.gene04638.t1 AT5G03790 42.045 88 51 0 153 240 72 159 1.09e-13 68.6
MS.gene04638.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.18e-13 69.7
MS.gene04638.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.21e-13 69.7
MS.gene04638.t1 AT4G36740 41.837 98 56 1 147 244 45 141 4.77e-12 64.7
MS.gene04638.t1 AT4G36740 41.837 98 56 1 147 244 46 142 4.79e-12 64.7
MS.gene04638.t1 AT3G61890 42.169 83 48 0 161 243 33 115 1.51e-11 63.5

Find 79 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTCGACTACTGTTTC+TGG 0.172775 7.3:+17271552 None:intergenic
CTTCGAATTCCCTGGCTTAA+TGG 0.240731 7.3:-17271951 MS.gene04638:CDS
ACCAGCGATGATGAAGAAAA+TGG 0.272695 7.3:-17271514 MS.gene04638:CDS
AATATGACGCTGCACTATTC+GGG 0.319466 7.3:+17271620 None:intergenic
CTCTAACAGAAGAAAATAAA+AGG 0.327202 7.3:-17270432 MS.gene04638:CDS
CCACGGACGCCAACCGGAAT+TGG 0.334110 7.3:+17271677 None:intergenic
TAATATGACGCTGCACTATT+CGG 0.334434 7.3:+17271619 None:intergenic
GAAGAAACTCAGACTCTCTA+AGG 0.373372 7.3:-17271482 MS.gene04638:CDS
TTGTTTAGTGGCAGTGGTTC+CGG 0.381277 7.3:+17270291 None:intergenic
CTCCACTTCTTCGAATTCCC+TGG 0.385540 7.3:-17271959 MS.gene04638:CDS
TATCGGATGTGAACCAATTC+CGG 0.385580 7.3:-17271690 MS.gene04638:CDS
CACTTCCGTTTGCTTTAACT+TGG 0.385691 7.3:+17270486 None:intergenic
GTCCACGTCAAGTAGAAGTT+TGG 0.395922 7.3:-17270686 MS.gene04638:CDS
AATCGAGATGGTTTGTTTAG+TGG 0.400673 7.3:+17270279 None:intergenic
TCATTATTGGCGGTGCCCAC+CGG 0.402169 7.3:+17270252 None:intergenic
ATGGAGCTGGCTTTGAGCTT+AGG 0.426776 7.3:-17272164 MS.gene04638:CDS
TATCCTCCACGGACGCCAAC+CGG 0.430609 7.3:+17271671 None:intergenic
CCAATTCCGGTTGGCGTCCG+TGG 0.435135 7.3:-17271677 MS.gene04638:CDS
CTATGTGTCCTTCTTGTGAA+AGG 0.437758 7.3:-17270330 MS.gene04638:CDS
GAGTCTGAGTTTCTTCCTTG+TGG 0.443252 7.3:+17271489 None:intergenic
AGAAAATAAAAGGTTACAAA+AGG 0.465210 7.3:-17270422 MS.gene04638:CDS
GATGGTTTGTTTAGTGGCAG+TGG 0.466617 7.3:+17270285 None:intergenic
AGTTCAATCACCGATGGAGC+TGG 0.469281 7.3:-17272177 None:intergenic
TTCGAAGAAGTGGAGAAGGC+TGG 0.476464 7.3:+17271967 None:intergenic
GTGGAGAAGGCTGGGAGTGA+AGG 0.477756 7.3:+17271976 None:intergenic
CACATAGTGAGAGTGGTAGC+TGG 0.479169 7.3:+17270346 None:intergenic
CAGAAACAGTAGTCGAGAAG+AGG 0.481552 7.3:-17271551 MS.gene04638:CDS
GGCTGCAGTTGGTGTGGAAC+CGG 0.481908 7.3:-17271719 MS.gene04638:intron
GAGTGAAGGACCGGTGTTGA+AGG 0.484612 7.3:+17271990 None:intergenic
GGCAGTGGTTCCGGTGGTGT+TGG 0.486933 7.3:+17270300 None:intergenic
TTTACTTGCACCATTAAGCC+AGG 0.488537 7.3:+17271941 None:intergenic
GGAAGAAGATTGAGCTGAAT+GGG 0.496713 7.3:+17272011 None:intergenic
CAAGTTAAAGCAAACGGAAG+TGG 0.499846 7.3:-17270485 MS.gene04638:CDS
AGTGGTTCCGGTGGTGTTGG+TGG 0.508654 7.3:+17270303 None:intergenic
CCAGCGATGATGAAGAAAAT+GGG 0.527273 7.3:-17271513 MS.gene04638:CDS
AGGAAGAAGATTGAGCTGAA+TGG 0.527689 7.3:+17272010 None:intergenic
AGAACACACCACTCTCAATC+CGG 0.532530 7.3:-17271428 MS.gene04638:intron
CAGGACCAAGTTAAAGCAAA+CGG 0.533115 7.3:-17270491 MS.gene04638:CDS
TATGTGTCCTTCTTGTGAAA+GGG 0.534150 7.3:-17270329 MS.gene04638:CDS
CAATCTTCTTCCTTCAACAC+CGG 0.539071 7.3:-17272000 MS.gene04638:CDS
GCAGAAACAGAAACTTGCTC+TGG 0.539316 7.3:-17270727 MS.gene04638:intron
AGAACCGTTGTCATTATTGG+CGG 0.539567 7.3:+17270242 None:intergenic
AAGCTCAAAGCCAGCTCCAT+CGG 0.539731 7.3:+17272167 None:intergenic
TCGAAGAAGTGGAGAAGGCT+GGG 0.542272 7.3:+17271968 None:intergenic
AGCCAGGGAATTCGAAGAAG+TGG 0.543327 7.3:+17271957 None:intergenic
GAAGGCTGGGAGTGAAGGAC+CGG 0.549545 7.3:+17271981 None:intergenic
GTGGCGACCCTTTCACAAGA+AGG 0.556254 7.3:+17270322 None:intergenic
GCTAAACCGTGTTCTTCAAG+TGG 0.571158 7.3:+17272074 None:intergenic
AGAAACAGTAGTCGAGAAGA+GGG 0.577673 7.3:-17271550 MS.gene04638:CDS
CCCACCGGTGGTAATCGAGA+TGG 0.582759 7.3:+17270267 None:intergenic
AGGGTCGCCACCAACACCAC+CGG 0.588362 7.3:-17270310 MS.gene04638:CDS
GCTGGAAGTTGCATGTAGAA+TGG 0.591856 7.3:+17270364 None:intergenic
ACCATCTCGATTACCACCGG+TGG 0.592762 7.3:-17270268 MS.gene04638:CDS
GGAATTCGAAGAAGTGGAGA+AGG 0.592815 7.3:+17271963 None:intergenic
AGAAGATTGAGCTGAATGGG+TGG 0.595515 7.3:+17272014 None:intergenic
TTCACATCCGATACTCTCAC+CGG 0.595525 7.3:+17271700 None:intergenic
AGAAGGACACATAGTGAGAG+TGG 0.600200 7.3:+17270339 None:intergenic
TGCAGCGTCATATTATCAGA+TGG 0.603249 7.3:-17271611 MS.gene04638:CDS
TATTATTACCGGATTGAGAG+TGG 0.604923 7.3:+17271420 None:intergenic
AACCAAACTTCTACTTGACG+TGG 0.605331 7.3:+17270684 None:intergenic
TTATTGGCGGTGCCCACCGG+TGG 0.607951 7.3:+17270255 None:intergenic
GTTTACGGCTGCAGTTGGTG+TGG 0.608602 7.3:-17271725 MS.gene04638:intron
CAGTAGTCGAGAAGAGGGTG+CGG 0.609350 7.3:-17271545 MS.gene04638:CDS
GGTTTCAGAATAGAAGAGCA+AGG 0.612001 7.3:-17270665 MS.gene04638:intron
ATGAAGAAAATGGGTCCACA+AGG 0.617090 7.3:-17271504 MS.gene04638:CDS
GAGCTGAATGGGTGGATCTG+AGG 0.625502 7.3:+17272022 None:intergenic
TGTGGAACCGGTGAGAGTAT+CGG 0.632478 7.3:-17271707 MS.gene04638:CDS
ATTCCGGTTGGCGTCCGTGG+AGG 0.636105 7.3:-17271674 MS.gene04638:CDS
ATATGACGCTGCACTATTCG+GGG 0.636746 7.3:+17271621 None:intergenic
CCATCTCGATTACCACCGGT+GGG 0.643789 7.3:-17270267 MS.gene04638:CDS
TGCATACCACTTGAAGAACA+CGG 0.644956 7.3:-17272080 MS.gene04638:CDS
CAAACCATCTCGATTACCAC+CGG 0.647502 7.3:-17270271 MS.gene04638:CDS
TGAAACTGCAGCTCCCTCGT+CGG 0.652204 7.3:+17271645 None:intergenic
GGATGTGAACCAATTCCGGT+TGG 0.657900 7.3:-17271686 MS.gene04638:CDS
TTTAGTGGCAGTGGTTCCGG+TGG 0.663174 7.3:+17270294 None:intergenic
TTACTTGCACCATTAAGCCA+GGG 0.674390 7.3:+17271942 None:intergenic
CTCGTCGGTAGTATCCTCCA+CGG 0.686078 7.3:+17271660 None:intergenic
CGTGGAGGATACTACCGACG+AGG 0.692188 7.3:-17271659 MS.gene04638:CDS
GTGGAGGATACTACCGACGA+GGG 0.757148 7.3:-17271658 MS.gene04638:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTCATTTTTTTATT+AGG + chr7.3:17271902-17271921 None:intergenic 10.0%
!!! GAAATAAATATTGTTATTTT+AGG - chr7.3:17271637-17271656 MS.gene04638:CDS 10.0%
!! AGTATAGTTACTTAAAAAAT+AGG + chr7.3:17270663-17270682 None:intergenic 15.0%
!! GTATAGTTACTTAAAAAATA+GGG + chr7.3:17270662-17270681 None:intergenic 15.0%
!! TAACTAAATAATCATTTAAC+TGG + chr7.3:17271329-17271348 None:intergenic 15.0%
!! TATAGTTACTTAAAAAATAG+GGG + chr7.3:17270661-17270680 None:intergenic 15.0%
!! AAATGAAAAACATAATGTAC+AGG - chr7.3:17271909-17271928 MS.gene04638:intron 20.0%
!! AGAAAATAAAAGGTTACAAA+AGG - chr7.3:17271997-17272016 MS.gene04638:CDS 20.0%
!! TACTTATATGTGTATGTTTA+CGG - chr7.3:17270679-17270698 MS.gene04638:CDS 20.0%
!! TATAATATAAAAAATCGCAG+AGG - chr7.3:17271521-17271540 MS.gene04638:CDS 20.0%
!!! AAATAATTTGTGATAAGTGT+GGG + chr7.3:17271213-17271232 None:intergenic 20.0%
!!! ATCACAAATTATTTCTCTTT+TGG - chr7.3:17271219-17271238 MS.gene04638:intron 20.0%
!!! TGTTTCTAAAAATTTTGTGT+AGG + chr7.3:17271133-17271152 None:intergenic 20.0%
! AAATGAAATGTTGTTAGAGA+GGG + chr7.3:17271028-17271047 None:intergenic 25.0%
! AGATATATGATGATATGTGT+GGG + chr7.3:17271245-17271264 None:intergenic 25.0%
! CTCTAACAGAAGAAAATAAA+AGG - chr7.3:17271987-17272006 MS.gene04638:CDS 25.0%
!! ATCCAGAATTTTTGAATAGT+GGG + chr7.3:17271567-17271586 None:intergenic 25.0%
!! ATGGATTTTTCTATCATGAA+TGG - chr7.3:17270827-17270846 MS.gene04638:intron 25.0%
!! ATTATCTTTTCTGTGTTATG+AGG - chr7.3:17271790-17271809 MS.gene04638:intron 25.0%
!! GAAATAATTTGTGATAAGTG+TGG + chr7.3:17271214-17271233 None:intergenic 25.0%
!! GATTTTTATCATGCAATACA+TGG - chr7.3:17271079-17271098 MS.gene04638:intron 25.0%
!! GCAGAGGATAATTTTATATA+TGG - chr7.3:17271537-17271556 MS.gene04638:CDS 25.0%
!! TCAAACAAAGAGAATGTTTT+CGG + chr7.3:17270288-17270307 None:intergenic 25.0%
!! TTTTCTATCATGAATGGTAA+TGG - chr7.3:17270833-17270852 MS.gene04638:intron 25.0%
!! TTTTGTTGGGTAATTTTGTA+GGG + chr7.3:17270314-17270333 None:intergenic 25.0%
ATCAAATGTTAAATCGTGAG+AGG - chr7.3:17271414-17271433 MS.gene04638:intron 30.0%
CAAATGAAATGTTGTTAGAG+AGG + chr7.3:17271029-17271048 None:intergenic 30.0%
GAGATATATGATGATATGTG+TGG + chr7.3:17271246-17271265 None:intergenic 30.0%
! GATCCAGAATTTTTGAATAG+TGG + chr7.3:17271568-17271587 None:intergenic 30.0%
! TCCAGAATTTTTGAATAGTG+GGG + chr7.3:17271566-17271585 None:intergenic 30.0%
! TTTTATCATGCAATACATGG+AGG - chr7.3:17271082-17271101 MS.gene04638:intron 30.0%
!! GTTTTGTTGGGTAATTTTGT+AGG + chr7.3:17270315-17270334 None:intergenic 30.0%
!!! GGAATCACTTTTTTGGTTTA+AGG + chr7.3:17270379-17270398 None:intergenic 30.0%
ATAGAAGAGCAAGGTAACTA+AGG - chr7.3:17271763-17271782 MS.gene04638:intron 35.0%
ATCAAATGTGAAATCGTGAG+AGG - chr7.3:17271300-17271319 MS.gene04638:intron 35.0%
TAATATGACGCTGCACTATT+CGG + chr7.3:17270803-17270822 None:intergenic 35.0%
TAGAAGAGCAAGGTAACTAA+GGG - chr7.3:17271764-17271783 MS.gene04638:intron 35.0%
TATGTGTCCTTCTTGTGAAA+GGG - chr7.3:17272090-17272109 MS.gene04638:CDS 35.0%
TATTATTACCGGATTGAGAG+TGG + chr7.3:17271002-17271021 None:intergenic 35.0%
TTTGTCTATACGAAACTACG+AGG + chr7.3:17270517-17270536 None:intergenic 35.0%
! CCAGAATTTTTGAATAGTGG+GGG + chr7.3:17271565-17271584 None:intergenic 35.0%
!! AATCGAGATGGTTTGTTTAG+TGG + chr7.3:17272143-17272162 None:intergenic 35.0%
!! AGAGAGGGTGTTATTATTAC+CGG + chr7.3:17271013-17271032 None:intergenic 35.0%
!! AGTTTCTGTTTCTGCAGATT+TGG + chr7.3:17271687-17271706 None:intergenic 35.0%
!! GTTTCTGTTTCTGCAGATTT+GGG + chr7.3:17271686-17271705 None:intergenic 35.0%
!! TGGTATGCAGAAAGTTTTGT+TGG + chr7.3:17270328-17270347 None:intergenic 35.0%
!!! GATCTGAGGAATCACTTTTT+TGG + chr7.3:17270386-17270405 None:intergenic 35.0%
!!! GGTATGCAGAAAGTTTTGTT+GGG + chr7.3:17270327-17270346 None:intergenic 35.0%
AACCAAACTTCTACTTGACG+TGG + chr7.3:17271738-17271757 None:intergenic 40.0%
AATATGACGCTGCACTATTC+GGG + chr7.3:17270802-17270821 None:intergenic 40.0%
ACCAGCGATGATGAAGAAAA+TGG - chr7.3:17270905-17270924 MS.gene04638:intron 40.0%
AGAAACAGTAGTCGAGAAGA+GGG - chr7.3:17270869-17270888 MS.gene04638:intron 40.0%
AGGAAGAAGATTGAGCTGAA+TGG + chr7.3:17270412-17270431 None:intergenic 40.0%
ATGAAGAAAATGGGTCCACA+AGG - chr7.3:17270915-17270934 MS.gene04638:intron 40.0%
ATGGAGGAAAAACCTTCAAG+TGG - chr7.3:17271098-17271117 MS.gene04638:intron 40.0%
CAAGTTAAAGCAAACGGAAG+TGG - chr7.3:17271934-17271953 MS.gene04638:intron 40.0%
CAATCTTCTTCCTTCAACAC+CGG - chr7.3:17270419-17270438 MS.gene04638:CDS 40.0%
CACTTCCGTTTGCTTTAACT+TGG + chr7.3:17271936-17271955 None:intergenic 40.0%
CAGGACCAAGTTAAAGCAAA+CGG - chr7.3:17271928-17271947 MS.gene04638:intron 40.0%
CCAGCGATGATGAAGAAAAT+GGG - chr7.3:17270906-17270925 MS.gene04638:intron 40.0%
CCCCCACTATTCAAAAATTC+TGG - chr7.3:17271562-17271581 MS.gene04638:CDS 40.0%
CTATGTGTCCTTCTTGTGAA+AGG - chr7.3:17272089-17272108 MS.gene04638:CDS 40.0%
GAAACTACGAGGAAACAAGA+GGG + chr7.3:17270506-17270525 None:intergenic 40.0%
GAAGAAACTCAGACTCTCTA+AGG - chr7.3:17270937-17270956 MS.gene04638:intron 40.0%
GGAAGAAGATTGAGCTGAAT+GGG + chr7.3:17270411-17270430 None:intergenic 40.0%
GGTTTCAGAATAGAAGAGCA+AGG - chr7.3:17271754-17271773 MS.gene04638:intron 40.0%
TATCGGATGTGAACCAATTC+CGG - chr7.3:17270729-17270748 MS.gene04638:intron 40.0%
TGCAGCGTCATATTATCAGA+TGG - chr7.3:17270808-17270827 MS.gene04638:intron 40.0%
TGCATACCACTTGAAGAACA+CGG - chr7.3:17270339-17270358 MS.gene04638:CDS 40.0%
TGGAGGAAAAACCTTCAAGT+GGG - chr7.3:17271099-17271118 MS.gene04638:intron 40.0%
TGTGATAAGTGTGGGTCATA+TGG + chr7.3:17271205-17271224 None:intergenic 40.0%
TTACTTGCACCATTAAGCCA+GGG + chr7.3:17270480-17270499 None:intergenic 40.0%
TTTACTTGCACCATTAAGCC+AGG + chr7.3:17270481-17270500 None:intergenic 40.0%
AGAACACACCACTCTCAATC+CGG - chr7.3:17270991-17271010 MS.gene04638:intron 45.0%
AGAAGATTGAGCTGAATGGG+TGG + chr7.3:17270408-17270427 None:intergenic 45.0%
AGAAGGACACATAGTGAGAG+TGG + chr7.3:17272083-17272102 None:intergenic 45.0%
ATATGACGCTGCACTATTCG+GGG + chr7.3:17270801-17270820 None:intergenic 45.0%
CAAACCATCTCGATTACCAC+CGG - chr7.3:17272148-17272167 MS.gene04638:CDS 45.0%
CAGAAACAGTAGTCGAGAAG+AGG - chr7.3:17270868-17270887 MS.gene04638:intron 45.0%
CGAAACTACGAGGAAACAAG+AGG + chr7.3:17270507-17270526 None:intergenic 45.0%
CTCTTCTCGACTACTGTTTC+TGG + chr7.3:17270870-17270889 None:intergenic 45.0%
CTTCGAATTCCCTGGCTTAA+TGG - chr7.3:17270468-17270487 MS.gene04638:CDS 45.0%
GAGGAAAAACCTTCAAGTGG+GGG - chr7.3:17271101-17271120 MS.gene04638:intron 45.0%
GAGTCTGAGTTTCTTCCTTG+TGG + chr7.3:17270933-17270952 None:intergenic 45.0%
GCTAAACCGTGTTCTTCAAG+TGG + chr7.3:17270348-17270367 None:intergenic 45.0%
GCTGGAAGTTGCATGTAGAA+TGG + chr7.3:17272058-17272077 None:intergenic 45.0%
GGAATTCGAAGAAGTGGAGA+AGG + chr7.3:17270459-17270478 None:intergenic 45.0%
GGAGGAAAAACCTTCAAGTG+GGG - chr7.3:17271100-17271119 MS.gene04638:intron 45.0%
GTCCACGTCAAGTAGAAGTT+TGG - chr7.3:17271733-17271752 MS.gene04638:intron 45.0%
TGTATGTTTACGGCTGCAGT+TGG - chr7.3:17270689-17270708 MS.gene04638:CDS 45.0%
TTCACATCCGATACTCTCAC+CGG + chr7.3:17270722-17270741 None:intergenic 45.0%
TTGTTTAGTGGCAGTGGTTC+CGG + chr7.3:17272131-17272150 None:intergenic 45.0%
! CCCATTTTCTTCATCATCGC+TGG + chr7.3:17270909-17270928 None:intergenic 45.0%
! GCAGAAACAGAAACTTGCTC+TGG - chr7.3:17271692-17271711 MS.gene04638:CDS 45.0%
!! GATGGTTTGTTTAGTGGCAG+TGG + chr7.3:17272137-17272156 None:intergenic 45.0%
!! AAATAAACAAAATAAATATT+TGG + chr7.3:17271836-17271855 None:intergenic 5.0%
AGCCAGGGAATTCGAAGAAG+TGG + chr7.3:17270465-17270484 None:intergenic 50.0%
CACATAGTGAGAGTGGTAGC+TGG + chr7.3:17272076-17272095 None:intergenic 50.0%
CTCCACTTCTTCGAATTCCC+TGG - chr7.3:17270460-17270479 MS.gene04638:CDS 50.0%
GGATGTGAACCAATTCCGGT+TGG - chr7.3:17270733-17270752 MS.gene04638:intron 50.0%
TCGAAGAAGTGGAGAAGGCT+GGG + chr7.3:17270454-17270473 None:intergenic 50.0%
TTCGAAGAAGTGGAGAAGGC+TGG + chr7.3:17270455-17270474 None:intergenic 50.0%
! TGTGGAACCGGTGAGAGTAT+CGG - chr7.3:17270712-17270731 MS.gene04638:CDS 50.0%
!! ATGGAGCTGGCTTTGAGCTT+AGG - chr7.3:17270255-17270274 MS.gene04638:CDS 50.0%
ACCATCTCGATTACCACCGG+TGG - chr7.3:17272151-17272170 MS.gene04638:CDS 55.0%
CAGTAGTCGAGAAGAGGGTG+CGG - chr7.3:17270874-17270893 MS.gene04638:intron 55.0%
CCATCTCGATTACCACCGGT+GGG - chr7.3:17272152-17272171 MS.gene04638:CDS 55.0%
CTCGTCGGTAGTATCCTCCA+CGG + chr7.3:17270762-17270781 None:intergenic 55.0%
GAGCTGAATGGGTGGATCTG+AGG + chr7.3:17270400-17270419 None:intergenic 55.0%
GTGGAGGATACTACCGACGA+GGG - chr7.3:17270761-17270780 MS.gene04638:intron 55.0%
GTGGCGACCCTTTCACAAGA+AGG + chr7.3:17272100-17272119 None:intergenic 55.0%
TGAAACTGCAGCTCCCTCGT+CGG + chr7.3:17270777-17270796 None:intergenic 55.0%
TTTAGTGGCAGTGGTTCCGG+TGG + chr7.3:17272128-17272147 None:intergenic 55.0%
! GAGTGAAGGACCGGTGTTGA+AGG + chr7.3:17270432-17270451 None:intergenic 55.0%
! GTTTACGGCTGCAGTTGGTG+TGG - chr7.3:17270694-17270713 MS.gene04638:CDS 55.0%
AGGCACAAGCCCCCACTTGA+AGG + chr7.3:17271113-17271132 None:intergenic 60.0%
CCCACCGGTGGTAATCGAGA+TGG + chr7.3:17272155-17272174 None:intergenic 60.0%
CGTGGAGGATACTACCGACG+AGG - chr7.3:17270760-17270779 MS.gene04638:intron 60.0%
GAAGGCTGGGAGTGAAGGAC+CGG + chr7.3:17270441-17270460 None:intergenic 60.0%
GTGGAGAAGGCTGGGAGTGA+AGG + chr7.3:17270446-17270465 None:intergenic 60.0%
TATCCTCCACGGACGCCAAC+CGG + chr7.3:17270751-17270770 None:intergenic 60.0%
! AGTGGTTCCGGTGGTGTTGG+TGG + chr7.3:17272119-17272138 None:intergenic 60.0%
! GGCTGCAGTTGGTGTGGAAC+CGG - chr7.3:17270700-17270719 MS.gene04638:CDS 60.0%
AGGGTCGCCACCAACACCAC+CGG - chr7.3:17272109-17272128 MS.gene04638:CDS 65.0%
ATTCCGGTTGGCGTCCGTGG+AGG - chr7.3:17270745-17270764 MS.gene04638:intron 65.0%
CCAATTCCGGTTGGCGTCCG+TGG - chr7.3:17270742-17270761 MS.gene04638:intron 65.0%
CCACGGACGCCAACCGGAAT+TGG + chr7.3:17270745-17270764 None:intergenic 65.0%
GGCAGTGGTTCCGGTGGTGT+TGG + chr7.3:17272122-17272141 None:intergenic 65.0%
TTATTGGCGGTGCCCACCGG+TGG + chr7.3:17272167-17272186 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 17270255 17272186 17270255 ID=MS.gene04638
chr7.3 mRNA 17270255 17272186 17270255 ID=MS.gene04638.t1;Parent=MS.gene04638
chr7.3 exon 17271946 17272186 17271946 ID=MS.gene04638.t1.exon1;Parent=MS.gene04638.t1
chr7.3 CDS 17271946 17272186 17271946 ID=cds.MS.gene04638.t1;Parent=MS.gene04638.t1
chr7.3 exon 17271429 17271733 17271429 ID=MS.gene04638.t1.exon2;Parent=MS.gene04638.t1
chr7.3 CDS 17271429 17271733 17271429 ID=cds.MS.gene04638.t1;Parent=MS.gene04638.t1
chr7.3 exon 17270666 17270745 17270666 ID=MS.gene04638.t1.exon3;Parent=MS.gene04638.t1
chr7.3 CDS 17270666 17270745 17270666 ID=cds.MS.gene04638.t1;Parent=MS.gene04638.t1
chr7.3 exon 17270255 17270510 17270255 ID=MS.gene04638.t1.exon4;Parent=MS.gene04638.t1
chr7.3 CDS 17270255 17270510 17270255 ID=cds.MS.gene04638.t1;Parent=MS.gene04638.t1
Gene Sequence

>MS.gene04638

ATGGAGCTGGCTTTGAGCTTAGGCGACACACCGAAAACATTCTCTTTGTTTGAAAACCCTACAAAATTACCCAACAAAACTTTCTGCATACCACTTGAAGAACACGGTTTAGCTGAAAAATCCTTAAACCAAAAAAGTGATTCCTCAGATCCACCCATTCAGCTCAATCTTCTTCCTTCAACACCGGTCCTTCACTCCCAGCCTTCTCCACTTCTTCGAATTCCCTGGCTTAATGGTGCAAGTAAACACCCTCTTGTTTCCTCGTAGTTTCGTATAGACAAATGTTAATTAATTATTTGTTGCTAATCGAGTTTACGAAGAGTTTGATATTGTAACATCACACGTATGAAGATAGTAGTAAAATGATCATTAATATCATTGTTATTGATAACAATTTTTTTGACCCCTATTTTTTAAGTAACTATACTTATATGTGTATGTTTACGGCTGCAGTTGGTGTGGAACCGGTGAGAGTATCGGATGTGAACCAATTCCGGTTGGCGTCCGTGGAGGATACTACCGACGAGGGAGCTGCAGTTTCATCCCCGAATAGTGCAGCGTCATATTATCAGATGGATTTTTCTATCATGAATGGTAATGGTGATGCTGCAGCCAGAAACAGTAGTCGAGAAGAGGGTGCGGATAGAAATACCAGCGATGATGAAGAAAATGGGTCCACAAGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCGGTAATAATAACACCCTCTCTAACAACATTTCATTTGTTTCACTTTCTCTTTCTTATTTTAGTTAAAGATTTTTATCATGCAATACATGGAGGAAAAACCTTCAAGTGGGGGCTTGTGCCTACACAAAATTTTTAGAAACACTTTTTTTAGTAGAATAATACTATAATGTATCTATAATTGACATTTTGACCATATGACCCACACTTATCACAAATTATTTCTCTTTTGGCCCACACATATCATCATATATCTCAAGTTCTTTCTTGATAATATTAATATTATCAAGAATCAAATGTGAAATCGTGAGAGGTGACCAGTTAAATGATTATTTAGTTATTTATATAGAAAAATATATTTTTATTATCTCAAATTCTTTCTTGATAATATGAATATTATCAAGAATCAAATGTTAAATCGTGAGAGGTGACCAGTTAAATGATTATTTAGTTATTTATATAGAAAAAGATATTTTTATTAATATTGAAAATGAGAAATCATTCAAAATTTATATAATATAAAAAATCGCAGAGGATAATTTTATATATGGCGCCCCCACTATTCAAAAATTCTGGATCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATTGTTTTTTTTAAGAAATAAATATTGTTATTTTAGGTATATCTCATTAATCATATATTACCCAAATCTGCAGAAACAGAAACTTGCTCTGGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGTAACTAAGGGCACATTATCTTTTCTGTGTTATGAGGATATTATTTTTTGTCATAAACCAAATATTTATTTTGTTTATTTCTTCTATTAAAAAAATTGAAAAAATATATCTATTTAGTTTTTTCCTAATAAAAAAATGAAAAACATAATGTACAGGACCAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACTCTAACAGAAGAAAATAAAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCACTGCCACTAAACAAACCATCTCGATTACCACCGGTGGGCACCGCCAATAA
Protein sequence

>MS.gene04638.t1

MELALSLGDTPKTFSLFENPTKLPNKTFCIPLEEHGLAEKSLNQKSDSSDPPIQLNLLPSTPVLHSQPSPLLRIPWLNGAIGVEPVRVSDVNQFRLASVEDTTDEGAAVSSPNSAASYYQMDFSIMNGNGDAAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGTTATKQTISITTGGHRQ