AlfalfaGEDB | MS.gene046495

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046495.t1	XP_024639353.1	89.4	85	9	0	1	85	47	131	8.90E-39	169.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046495.t1	G7JX45	89.4	85	9	0	1	85	25	109	6.4e-39	169.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene046495.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046495.t1	MTR_5g053510	89.412	85	9	0	1	85	25	109	3.10e-52	159

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CAGACTTCAATGATTTCTTA+TGG	-	57245:11939-11958	MS.gene046495:CDS	30.0%
	CATAAGAAATCATTGAAGTC+TGG	+	57245:11941-11960	MS.gene046495:intergenic	30.0%
	TTCCTATAGACATGAACAAA+AGG	+	57245:12157-12176	MS.gene046495:intergenic	30.0%
	AACAACAATGCATTCCAGAT+TGG	-	57245:12091-12110	MS.gene046495:CDS	35.0%
	AAGAAATCATTGAAGTCTGG+TGG	+	57245:11938-11957	MS.gene046495:intergenic	35.0%
	GATTTGCATTGCACAGAAAA+AGG	+	57245:11982-12001	MS.gene046495:intergenic	35.0%
	GCTGTAACAAACTCTTCATT+CGG	+	57245:12004-12023	MS.gene046495:intergenic	35.0%
	TATTCAGCGATTCATTGCTT+TGG	+	57245:12039-12058	MS.gene046495:intergenic	35.0%
	AACGAATAGTGTCTCCAATC+TGG	+	57245:12108-12127	MS.gene046495:intergenic	40.0%
!	AGACTTCAATGATTTCTTAT+GGG	-	57245:11940-11959	MS.gene046495:CDS	25.0%

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Chromosome	Type	Strat	End	Strand	Name
57245	gene	11929	12186	11929	ID=MS.gene046495
57245	mRNA	11929	12186	11929	ID=MS.gene046495.t1;Parent=MS.gene046495
57245	exon	11929	12186	11929	ID=MS.gene046495.t1.exon1;Parent=MS.gene046495.t1
57245	CDS	11929	12186	11929	ID=cds.MS.gene046495.t1;Parent=MS.gene046495.t1

Gene Sequence	>MS.gene046495 GTTCTGCCACCAGACTTCAATGATTTCTTATGGGATAGTGATTTCGATTACCTTTTTCTGTGCAATGCAAATCCGAATGAAGAGTTTGTTACAGCTGAAATTGAATACCAAAGCAATGAATCGCTGAATACTAAGTTAAAAAATGGTTGGGAGACATTCTGTAACAACAATGCATTCCAGATTGGAGACACTATTCGTTTCAAGTTCTTCGATGGGAAAAACAGTCCTTTTGTTCATGTCTATAGGAACAATCCTTAA
Protein sequence	>MS.gene046495.t1 VLPPDFNDFLWDSDFDYLFLCNANPNEEFVTAEIEYQSNESLNTKLKNGWETFCNNNAFQIGDTIRFKFFDGKNSPFVHVYRNNP

M. sativa cultivar XinJiangDaYe / MS.gene046495