Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046830.t1 | XP_024632961.1 | 94.7 | 265 | 14 | 0 | 277 | 541 | 47 | 311 | 5.50E-142 | 514.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046830.t1 | Q9SZL8 | 27.3 | 260 | 172 | 5 | 280 | 539 | 72 | 314 | 7.6e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046830.t1 | A0A072TE13 | 90.8 | 272 | 25 | 0 | 270 | 541 | 25 | 296 | 1.1e-139 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene046830.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046830.t1 | MTR_0558s0020 | 90.809 | 272 | 25 | 0 | 270 | 541 | 25 | 296 | 0.0 | 524 |
| MS.gene046830.t1 | MTR_1g083640 | 91.498 | 247 | 21 | 0 | 270 | 516 | 40 | 286 | 5.68e-170 | 482 |
| MS.gene046830.t1 | MTR_6g090505 | 90.000 | 230 | 23 | 0 | 311 | 540 | 1 | 230 | 1.27e-149 | 434 |
| MS.gene046830.t1 | MTR_8g446020 | 76.103 | 272 | 26 | 1 | 270 | 541 | 24 | 256 | 5.93e-145 | 417 |
| MS.gene046830.t1 | MTR_2g014100 | 87.324 | 213 | 27 | 0 | 270 | 482 | 33 | 245 | 4.89e-136 | 394 |
| MS.gene046830.t1 | MTR_0337s0040 | 71.369 | 241 | 30 | 1 | 270 | 510 | 25 | 226 | 5.03e-116 | 343 |
| MS.gene046830.t1 | MTR_3g008240 | 87.151 | 179 | 23 | 0 | 270 | 448 | 25 | 203 | 4.06e-111 | 329 |
| MS.gene046830.t1 | MTR_4g040430 | 86.592 | 179 | 20 | 1 | 270 | 448 | 24 | 198 | 3.96e-108 | 321 |
| MS.gene046830.t1 | MTR_0019s0290 | 86.928 | 153 | 17 | 1 | 330 | 479 | 8 | 160 | 4.33e-91 | 276 |
| MS.gene046830.t1 | MTR_5g071590 | 89.928 | 139 | 14 | 0 | 273 | 411 | 40 | 178 | 5.16e-90 | 275 |
| MS.gene046830.t1 | MTR_1g055240 | 89.510 | 143 | 15 | 0 | 336 | 478 | 2 | 144 | 2.25e-89 | 271 |
| MS.gene046830.t1 | MTR_1281s0010 | 91.262 | 103 | 9 | 0 | 271 | 373 | 7 | 109 | 1.31e-60 | 196 |
| MS.gene046830.t1 | MTR_1g093780 | 40.179 | 224 | 119 | 5 | 4 | 221 | 211 | 425 | 4.05e-27 | 115 |
| MS.gene046830.t1 | MTR_6g051425 | 29.134 | 254 | 155 | 5 | 286 | 534 | 22 | 255 | 2.58e-24 | 104 |
| MS.gene046830.t1 | MTR_8g046060 | 82.143 | 56 | 10 | 0 | 270 | 325 | 123 | 178 | 1.44e-22 | 96.7 |
| MS.gene046830.t1 | MTR_4g008820 | 78.571 | 56 | 12 | 0 | 270 | 325 | 149 | 204 | 1.09e-20 | 96.3 |
| MS.gene046830.t1 | MTR_1g070355 | 27.200 | 250 | 159 | 6 | 287 | 534 | 80 | 308 | 1.51e-17 | 86.3 |
| MS.gene046830.t1 | MTR_0337s0050 | 76.316 | 38 | 9 | 0 | 505 | 542 | 14 | 51 | 2.28e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046830.t1 | AT4G38180 | 27.341 | 267 | 167 | 6 | 280 | 541 | 72 | 316 | 4.71e-22 | 100 |
| MS.gene046830.t1 | AT5G28530 | 24.907 | 269 | 172 | 6 | 286 | 542 | 60 | 310 | 1.35e-12 | 70.9 |
| MS.gene046830.t1 | AT5G28530 | 24.907 | 269 | 172 | 6 | 286 | 542 | 60 | 310 | 1.43e-12 | 70.9 |
| MS.gene046830.t1 | AT5G28530 | 24.907 | 269 | 172 | 6 | 286 | 542 | 60 | 310 | 1.43e-12 | 70.9 |
| MS.gene046830.t1 | AT1G10240 | 24.335 | 263 | 173 | 9 | 286 | 542 | 53 | 295 | 8.21e-12 | 68.6 |
| MS.gene046830.t1 | AT1G10240 | 24.335 | 263 | 173 | 9 | 286 | 542 | 53 | 295 | 8.21e-12 | 68.6 |
Find 94 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAACTTTCCTCTTATC+TGG | 0.128821 | 3.1:-27273156 | None:intergenic |
| CACTACTACAGATGAAATTC+TGG | 0.252486 | 3.1:+27273131 | MS.gene046830:CDS |
| GTCTCCTCCTCCATTCTTAG+AGG | 0.265827 | 3.1:+27273050 | MS.gene046830:CDS |
| ACTAAGTACTCATCAAAATT+AGG | 0.286638 | 3.1:-27273084 | None:intergenic |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 3.1:-27274320 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3.1:-27274511 | None:intergenic |
| TCAAGCTCAATCTAACAATA+TGG | 0.313798 | 3.1:+27272735 | MS.gene046830:CDS |
| TTGTTGGATTCCCAGCCTTC+TGG | 0.314278 | 3.1:-27272867 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3.1:+27274827 | MS.gene046830:CDS |
| CTAAGGTAACACGAATGATT+TGG | 0.324322 | 3.1:-27274494 | None:intergenic |
| ACTAGTGTTATCAGTCCTTT+TGG | 0.345184 | 3.1:-27272818 | None:intergenic |
| AAAGAATGCAGTCGCGAAAA+TGG | 0.347538 | 3.1:-27273425 | None:intergenic |
| GTTCACAACATTGCTCAATC+TGG | 0.380274 | 3.1:+27272679 | MS.gene046830:CDS |
| GAGAACGTCTAATGAAGTTA+TGG | 0.402471 | 3.1:+27274586 | MS.gene046830:CDS |
| CTCAAACAACTCAAAAGAAA+TGG | 0.406124 | 3.1:-27272902 | None:intergenic |
| CGGAAAACCACGTCGGAAAT+CGG | 0.408511 | 3.1:-27273451 | None:intergenic |
| CTCCATTCTTAGAGGTTCCT+AGG | 0.410638 | 3.1:+27273058 | MS.gene046830:CDS |
| GCAATGTTCACCGGTGAAAT+CGG | 0.413833 | 3.1:-27273496 | None:intergenic |
| AGATAGCAGTTTCGCGAAAA+CGG | 0.415061 | 3.1:-27273398 | None:intergenic |
| AAAATGCAGTATGAATTTGC+TGG | 0.417882 | 3.1:-27273639 | None:intergenic |
| ATCGAACAAACAATATATAT+CGG | 0.421135 | 3.1:+27274876 | MS.gene046830:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.1:+27274524 | MS.gene046830:CDS |
| AGCTGGAATATCTTTGAAGT+TGG | 0.433004 | 3.1:+27274406 | MS.gene046830:CDS |
| TACTCACATTACAGTTGATA+AGG | 0.434062 | 3.1:+27272975 | MS.gene046830:CDS |
| AACAATATATATCGGCCATT+AGG | 0.437083 | 3.1:+27274884 | MS.gene046830:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.1:+27274389 | MS.gene046830:CDS |
| ATTTCATCTGTAGTAGTGAT+AGG | 0.450643 | 3.1:-27273126 | None:intergenic |
| ATGAGCTTTAGAATGAGCTT+TGG | 0.450667 | 3.1:-27272626 | None:intergenic |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3.1:+27274441 | MS.gene046830:CDS |
| ATGAATTTGCTGGAGATAGC+TGG | 0.453739 | 3.1:-27273629 | None:intergenic |
| GAATGATTTGGTTTATGTAA+TGG | 0.457469 | 3.1:-27274482 | None:intergenic |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.459248 | 3.1:+27274599 | MS.gene046830:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3.1:+27274554 | MS.gene046830:CDS |
| AGAACGTCTAATGAAGTTAT+GGG | 0.466325 | 3.1:+27274587 | MS.gene046830:CDS |
| TCCTCCACATTTAGACTGAT+AGG | 0.466714 | 3.1:-27273003 | None:intergenic |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 3.1:+27274309 | MS.gene046830:CDS |
| CGGTGTCGGACCGATGAGAA+AGG | 0.470866 | 3.1:-27273601 | None:intergenic |
| AGCTCATATGAATAACAAAC+AGG | 0.472011 | 3.1:+27272642 | MS.gene046830:CDS |
| GAGACAAGTGTTCCCTCTCT+AGG | 0.472534 | 3.1:-27273032 | None:intergenic |
| ACAAAATAAGAAATCTGATA+AGG | 0.474392 | 3.1:+27274238 | MS.gene046830:CDS |
| AGGAAAGTTCAATTCATTGA+AGG | 0.474885 | 3.1:+27273165 | MS.gene046830:CDS |
| AAATTCTGGGCCCAGATAAG+AGG | 0.486330 | 3.1:+27273145 | MS.gene046830:CDS |
| CCCCTAGCAATGAAGAATCA+TGG | 0.491418 | 3.1:+27274108 | MS.gene046830:intron |
| ATTGAACTTTCCTCTTATCT+GGG | 0.492798 | 3.1:-27273155 | None:intergenic |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 3.1:+27274272 | MS.gene046830:CDS |
| ATTGTGACAAACCAGAAGGC+TGG | 0.500515 | 3.1:+27272856 | MS.gene046830:CDS |
| GGAGGCTAGGCCAGCTGACA+TGG | 0.501135 | 3.1:+27272948 | MS.gene046830:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3.1:-27274772 | None:intergenic |
| CGAATTTCACCCTTTCTCAT+CGG | 0.503530 | 3.1:+27273591 | MS.gene046830:CDS |
| TATGAATAACAAACAGGTTG+AGG | 0.504794 | 3.1:+27272648 | MS.gene046830:CDS |
| TTTAAGCCTGAAAACCGAAA+AGG | 0.504873 | 3.1:-27274638 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3.1:-27274383 | None:intergenic |
| AACTCAAAAGAAATGGATAC+AGG | 0.506566 | 3.1:-27272895 | None:intergenic |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3.1:+27274283 | MS.gene046830:CDS |
| TCCATTCTTAGAGGTTCCTA+GGG | 0.512997 | 3.1:+27273059 | MS.gene046830:CDS |
| GCGAAAACGGAGAAAGATTG+TGG | 0.514145 | 3.1:-27273385 | None:intergenic |
| TCCCTAGGAACCTCTAAGAA+TGG | 0.514169 | 3.1:-27273060 | None:intergenic |
| CAATCACACCGTTACGAAGC+CGG | 0.526036 | 3.1:-27273471 | None:intergenic |
| TCATCAAAATTAGGATCCCT+AGG | 0.530667 | 3.1:-27273075 | None:intergenic |
| ACTACTACAGATGAAATTCT+GGG | 0.531635 | 3.1:+27273132 | MS.gene046830:CDS |
| TATTTGTTAAAGTGACCAAA+AGG | 0.532304 | 3.1:+27272803 | MS.gene046830:CDS |
| TGTGATTGCGCCGATTTCAC+CGG | 0.540314 | 3.1:+27273486 | MS.gene046830:CDS |
| CTTTGCTCCGATTTCCGACG+TGG | 0.544907 | 3.1:+27273444 | MS.gene046830:CDS |
| TGAGTAATTTCCATGTCAGC+TGG | 0.546379 | 3.1:-27272958 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3.1:+27274284 | MS.gene046830:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | 3.1:-27274347 | None:intergenic |
| TTGTGACAAACCAGAAGGCT+GGG | 0.556364 | 3.1:+27272857 | MS.gene046830:CDS |
| AGACAAGTGTTCCCTCTCTA+GGG | 0.557209 | 3.1:-27273031 | None:intergenic |
| CATTGCTCAATCTGGAAATG+AGG | 0.558506 | 3.1:+27272687 | MS.gene046830:CDS |
| CGAAAACGGAGAAAGATTGT+GGG | 0.562048 | 3.1:-27273384 | None:intergenic |
| TAAGATATATAGATGGGATG+TGG | 0.566406 | 3.1:+27274448 | MS.gene046830:CDS |
| TCTAATGAAGTTATGGGTCA+AGG | 0.571062 | 3.1:+27274593 | MS.gene046830:CDS |
| GAATAACTCTGACACTGTTG+TGG | 0.574750 | 3.1:+27272765 | MS.gene046830:CDS |
| GGTAACTATGCATATAACAC+TGG | 0.575752 | 3.1:+27274176 | MS.gene046830:CDS |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3.1:+27274602 | MS.gene046830:CDS |
| CAATCTGGAAATGAGGCAGT+TGG | 0.579303 | 3.1:+27272694 | MS.gene046830:CDS |
| CACTGTTGTGGAAGGTGGTG+AGG | 0.592391 | 3.1:+27272777 | MS.gene046830:CDS |
| GGTGTCGGACCGATGAGAAA+GGG | 0.592590 | 3.1:-27273600 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3.1:+27274442 | MS.gene046830:CDS |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | 3.1:+27274331 | MS.gene046830:CDS |
| GGAACCTCTAAGAATGGAGG+AGG | 0.609119 | 3.1:-27273054 | None:intergenic |
| GCCTATCAGTCTAAATGTGG+AGG | 0.610964 | 3.1:+27273002 | MS.gene046830:CDS |
| TGGAGGACACTTCCCTAGAG+AGG | 0.611220 | 3.1:+27273019 | MS.gene046830:CDS |
| AACTCTGACACTGTTGTGGA+AGG | 0.615703 | 3.1:+27272769 | MS.gene046830:CDS |
| TGCTATTGTGACAAACCAGA+AGG | 0.621231 | 3.1:+27272852 | MS.gene046830:CDS |
| GATGCCTATCAGTCTAAATG+TGG | 0.629501 | 3.1:+27272999 | MS.gene046830:CDS |
| ACAGTGTCAGAGTTATTCAA+AGG | 0.632899 | 3.1:-27272760 | None:intergenic |
| TCTGACACTGTTGTGGAAGG+TGG | 0.634726 | 3.1:+27272772 | MS.gene046830:CDS |
| GAAAACGGAGAAAGATTGTG+GGG | 0.638560 | 3.1:-27273383 | None:intergenic |
| GGAGGACACTTCCCTAGAGA+GGG | 0.640474 | 3.1:+27273020 | MS.gene046830:CDS |
| CTAGGAACCTCTAAGAATGG+AGG | 0.644669 | 3.1:-27273057 | None:intergenic |
| GTAGTGATAGGAGTGATGCT+AGG | 0.688201 | 3.1:-27273114 | None:intergenic |
| AAAACGGAGAAAGATTGTGG+GGG | 0.734059 | 3.1:-27273382 | None:intergenic |
| ACGAAGCCGGAAAACCACGT+CGG | 0.777901 | 3.1:-27273458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAATACAACAAAAA+TGG | - | chr3.1:27273684-27273703 | None:intergenic | 15.0% |
| !!! | AAAAATCTTGAGAAAATTTT+GGG | + | chr3.1:27273224-27273243 | MS.gene046830:intron | 15.0% |
| !! | ACAAAATAAGAAATCTGATA+AGG | + | chr3.1:27274238-27274257 | MS.gene046830:CDS | 20.0% |
| !! | ATAGTATCAATTTAGTGATT+TGG | + | chr3.1:27273757-27273776 | MS.gene046830:intron | 20.0% |
| !! | ATCGAACAAACAATATATAT+CGG | + | chr3.1:27274876-27274895 | MS.gene046830:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr3.1:27274441-27274460 | MS.gene046830:CDS | 20.0% |
| !! | TCTTACTTATTTAAACTACA+GGG | + | chr3.1:27275061-27275080 | MS.gene046830:intron | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr3.1:27274442-27274461 | MS.gene046830:CDS | 20.0% |
| !! | TTCTTACTTATTTAAACTAC+AGG | + | chr3.1:27275060-27275079 | MS.gene046830:intron | 20.0% |
| !! | TTGATTCAAATTTCGAATTT+AGG | + | chr3.1:27273703-27273722 | MS.gene046830:intron | 20.0% |
| !! | TTTCGATTTATGATATCTAA+TGG | + | chr3.1:27273917-27273936 | MS.gene046830:intron | 20.0% |
| !!! | AAAATCTTGAGAAAATTTTG+GGG | + | chr3.1:27273225-27273244 | MS.gene046830:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3.1:27274155-27274174 | MS.gene046830:CDS | 20.0% |
| !!! | CAAAAATCTTGAGAAAATTT+TGG | + | chr3.1:27273223-27273242 | MS.gene046830:intron | 20.0% |
| ! | AAACCAATATACTGTGTAAA+TGG | - | chr3.1:27273863-27273882 | None:intergenic | 25.0% |
| ! | AAACCATTTACACAGTATAT+TGG | + | chr3.1:27273857-27273876 | MS.gene046830:intron | 25.0% |
| ! | ACTAAGTACTCATCAAAATT+AGG | - | chr3.1:27273087-27273106 | None:intergenic | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr3.1:27274902-27274921 | None:intergenic | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr3.1:27274827-27274846 | MS.gene046830:CDS | 25.0% |
| ! | CTTACTTATTTAAACTACAG+GGG | + | chr3.1:27275062-27275081 | MS.gene046830:intron | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | chr3.1:27274755-27274774 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr3.1:27274189-27274208 | MS.gene046830:CDS | 25.0% |
| !! | TATTTGTTAAAGTGACCAAA+AGG | + | chr3.1:27272803-27272822 | MS.gene046830:CDS | 25.0% |
| !! | TGTTTACTTTCATTTTGTTC+TGG | + | chr3.1:27274942-27274961 | MS.gene046830:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr3.1:27274789-27274808 | MS.gene046830:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr3.1:27274790-27274809 | MS.gene046830:CDS | 25.0% |
| !!! | GAATGATTTGGTTTATGTAA+TGG | - | chr3.1:27274485-27274504 | None:intergenic | 25.0% |
| !!! | GCTTTTTTAGAAATTTTAGC+AGG | - | chr3.1:27272592-27272611 | None:intergenic | 25.0% |
| !!! | TTTACACAGTATATTGGTTT+TGG | + | chr3.1:27273863-27273882 | MS.gene046830:intron | 25.0% |
| !!! | TTTTGGTCACTTTAACAAAT+AGG | - | chr3.1:27272804-27272823 | None:intergenic | 25.0% |
| AAAATGCAGTATGAATTTGC+TGG | - | chr3.1:27273642-27273661 | None:intergenic | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr3.1:27274284-27274303 | MS.gene046830:CDS | 30.0% | |
| AACAATATATATCGGCCATT+AGG | + | chr3.1:27274884-27274903 | MS.gene046830:CDS | 30.0% | |
| AACTCAAAAGAAATGGATAC+AGG | - | chr3.1:27272898-27272917 | None:intergenic | 30.0% | |
| AATTCATCAAAAAGAGATGG+TGG | + | chr3.1:27274676-27274695 | MS.gene046830:CDS | 30.0% | |
| AATTGAACTTTCCTCTTATC+TGG | - | chr3.1:27273159-27273178 | None:intergenic | 30.0% | |
| ACTACTACAGATGAAATTCT+GGG | + | chr3.1:27273132-27273151 | MS.gene046830:CDS | 30.0% | |
| AGAACGTCTAATGAAGTTAT+GGG | + | chr3.1:27274587-27274606 | MS.gene046830:CDS | 30.0% | |
| AGCTCATATGAATAACAAAC+AGG | + | chr3.1:27272642-27272661 | MS.gene046830:CDS | 30.0% | |
| AGGAAAGTTCAATTCATTGA+AGG | + | chr3.1:27273165-27273184 | MS.gene046830:CDS | 30.0% | |
| ATTGAACTTTCCTCTTATCT+GGG | - | chr3.1:27273158-27273177 | None:intergenic | 30.0% | |
| ATTTCATCTGTAGTAGTGAT+AGG | - | chr3.1:27273129-27273148 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | chr3.1:27274272-27274291 | MS.gene046830:CDS | 30.0% | |
| CTCAAACAACTCAAAAGAAA+TGG | - | chr3.1:27272905-27272924 | None:intergenic | 30.0% | |
| GACAATTCATCAAAAAGAGA+TGG | + | chr3.1:27274673-27274692 | MS.gene046830:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr3.1:27274283-27274302 | MS.gene046830:CDS | 30.0% | |
| TAAGAACTATAGTCAAACCT+AGG | - | chr3.1:27275046-27275065 | None:intergenic | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr3.1:27274448-27274467 | MS.gene046830:CDS | 30.0% | |
| TATGAATAACAAACAGGTTG+AGG | + | chr3.1:27272648-27272667 | MS.gene046830:CDS | 30.0% | |
| TCAAGCTCAATCTAACAATA+TGG | + | chr3.1:27272735-27272754 | MS.gene046830:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr3.1:27274514-27274533 | None:intergenic | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | - | chr3.1:27274350-27274369 | None:intergenic | 30.0% | |
| ! | TACTCACATTACAGTTGATA+AGG | + | chr3.1:27272975-27272994 | MS.gene046830:CDS | 30.0% |
| ! | TTCTAAAAAAGCTCACAATG+TGG | + | chr3.1:27272600-27272619 | MS.gene046830:CDS | 30.0% |
| !! | ATTCATACTGCATTTTGAAG+AGG | + | chr3.1:27273646-27273665 | MS.gene046830:CDS | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr3.1:27274554-27274573 | MS.gene046830:CDS | 30.0% |
| !!! | ATGATAGTGAGCTTTTTTCA+AGG | + | chr3.1:27272926-27272945 | MS.gene046830:CDS | 30.0% |
| !!! | TGATAGTGAGCTTTTTTCAA+GGG | + | chr3.1:27272927-27272946 | MS.gene046830:CDS | 30.0% |
| AATCACAACCATCAGATAAC+AGG | + | chr3.1:27273325-27273344 | MS.gene046830:intron | 35.0% | |
| ACAGTGTCAGAGTTATTCAA+AGG | - | chr3.1:27272763-27272782 | None:intergenic | 35.0% | |
| CACTACTACAGATGAAATTC+TGG | + | chr3.1:27273131-27273150 | MS.gene046830:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr3.1:27274524-27274543 | MS.gene046830:CDS | 35.0% | |
| CTAAGGTAACACGAATGATT+TGG | - | chr3.1:27274497-27274516 | None:intergenic | 35.0% | |
| CTGGCATGTGTATTATAAGT+AGG | + | chr3.1:27275004-27275023 | MS.gene046830:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr3.1:27274373-27274392 | MS.gene046830:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr3.1:27274367-27274386 | MS.gene046830:CDS | 35.0% | |
| GAGAACGTCTAATGAAGTTA+TGG | + | chr3.1:27274586-27274605 | MS.gene046830:CDS | 35.0% | |
| GGTAACTATGCATATAACAC+TGG | + | chr3.1:27274176-27274195 | MS.gene046830:CDS | 35.0% | |
| GGTTGTGATTAACTTATGCA+TGG | - | chr3.1:27273315-27273334 | None:intergenic | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | + | chr3.1:27274309-27274328 | MS.gene046830:CDS | 35.0% | |
| TATGCATGGTGCATAAGTTA+TGG | - | chr3.1:27273301-27273320 | None:intergenic | 35.0% | |
| TCATCAAAATTAGGATCCCT+AGG | - | chr3.1:27273078-27273097 | None:intergenic | 35.0% | |
| TCCATGATTCTTCATTGCTA+GGG | - | chr3.1:27274112-27274131 | None:intergenic | 35.0% | |
| TCTAATGAAGTTATGGGTCA+AGG | + | chr3.1:27274593-27274612 | MS.gene046830:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr3.1:27274372-27274391 | MS.gene046830:CDS | 35.0% | |
| TTCCATGATTCTTCATTGCT+AGG | - | chr3.1:27274113-27274132 | None:intergenic | 35.0% | |
| TTTAAGCCTGAAAACCGAAA+AGG | - | chr3.1:27274641-27274660 | None:intergenic | 35.0% | |
| ! | AATCTTCCTTTTCGGTTTTC+AGG | + | chr3.1:27274632-27274651 | MS.gene046830:CDS | 35.0% |
| ! | ACTAGTGTTATCAGTCCTTT+TGG | - | chr3.1:27272821-27272840 | None:intergenic | 35.0% |
| ! | TGCATGTTGCATTTTTGTTC+TGG | + | chr3.1:27274985-27275004 | MS.gene046830:intron | 35.0% |
| !! | AAAATTTTGGGGAGATGTGA+TGG | + | chr3.1:27273236-27273255 | MS.gene046830:intron | 35.0% |
| !! | AGCTGGAATATCTTTGAAGT+TGG | + | chr3.1:27274406-27274425 | MS.gene046830:CDS | 35.0% |
| !! | ATGAGCTTTAGAATGAGCTT+TGG | - | chr3.1:27272629-27272648 | None:intergenic | 35.0% |
| !! | GAGTGTTGAAACTTCTTCAA+TGG | + | chr3.1:27274058-27274077 | MS.gene046830:intron | 35.0% |
| !!! | ATGGATACAGGTAGTTTTGT+TGG | - | chr3.1:27272886-27272905 | None:intergenic | 35.0% |
| !!! | GCTAGTATTTTTTGGGTAGA+TGG | + | chr3.1:27274797-27274816 | MS.gene046830:CDS | 35.0% |
| AAAACGGAGAAAGATTGTGG+GGG | - | chr3.1:27273385-27273404 | None:intergenic | 40.0% | |
| AAACGTGAAGCAATGTTCAC+CGG | - | chr3.1:27273508-27273527 | None:intergenic | 40.0% | |
| AAAGAATGCAGTCGCGAAAA+TGG | - | chr3.1:27273428-27273447 | None:intergenic | 40.0% | |
| ACAAGTGTCCTGTTATCTGA+TGG | - | chr3.1:27273336-27273355 | None:intergenic | 40.0% | |
| AGATAGCAGTTTCGCGAAAA+CGG | - | chr3.1:27273401-27273420 | None:intergenic | 40.0% | |
| CATTGCTCAATCTGGAAATG+AGG | + | chr3.1:27272687-27272706 | MS.gene046830:CDS | 40.0% | |
| CCATGATTCTTCATTGCTAG+GGG | - | chr3.1:27274111-27274130 | None:intergenic | 40.0% | |
| CGAAAACGGAGAAAGATTGT+GGG | - | chr3.1:27273387-27273406 | None:intergenic | 40.0% | |
| CGAATTTCACCCTTTCTCAT+CGG | + | chr3.1:27273591-27273610 | MS.gene046830:CDS | 40.0% | |
| GAAAACGGAGAAAGATTGTG+GGG | - | chr3.1:27273386-27273405 | None:intergenic | 40.0% | |
| GAATAACTCTGACACTGTTG+TGG | + | chr3.1:27272765-27272784 | MS.gene046830:CDS | 40.0% | |
| GATGCCTATCAGTCTAAATG+TGG | + | chr3.1:27272999-27273018 | MS.gene046830:CDS | 40.0% | |
| GCTTCTGATGGCAAAAGTTA+TGG | + | chr3.1:27273267-27273286 | MS.gene046830:intron | 40.0% | |
| GGACACTTGTAATGATCCTA+TGG | + | chr3.1:27273346-27273365 | MS.gene046830:intron | 40.0% | |
| GTTCACAACATTGCTCAATC+TGG | + | chr3.1:27272679-27272698 | MS.gene046830:CDS | 40.0% | |
| TCCATTCTTAGAGGTTCCTA+GGG | + | chr3.1:27273059-27273078 | MS.gene046830:CDS | 40.0% | |
| TCCTCCACATTTAGACTGAT+AGG | - | chr3.1:27273006-27273025 | None:intergenic | 40.0% | |
| TCTGATGTTGTCCTGTTGTT+AGG | - | chr3.1:27274323-27274342 | None:intergenic | 40.0% | |
| TGAAATTCGTGCAACCTAGA+CGG | - | chr3.1:27273580-27273599 | None:intergenic | 40.0% | |
| TGAGTAATTTCCATGTCAGC+TGG | - | chr3.1:27272961-27272980 | None:intergenic | 40.0% | |
| TGCTATTGTGACAAACCAGA+AGG | + | chr3.1:27272852-27272871 | MS.gene046830:CDS | 40.0% | |
| ! | CATCAAAAAGAGATGGTGGT+TGG | + | chr3.1:27274680-27274699 | MS.gene046830:CDS | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | + | chr3.1:27275026-27275045 | MS.gene046830:intron | 40.0% |
| ! | GCACGAAGAATCTTCCTTTT+CGG | + | chr3.1:27274624-27274643 | MS.gene046830:CDS | 40.0% |
| !! | ATGAATTTGCTGGAGATAGC+TGG | - | chr3.1:27273632-27273651 | None:intergenic | 40.0% |
| !!! | GTGTTCGTTGCTGTTTTCAA+TGG | + | chr3.1:27273956-27273975 | MS.gene046830:intron | 40.0% |
| !!! | TAGTGAGCTTTTTTCAAGGG+AGG | + | chr3.1:27272930-27272949 | MS.gene046830:CDS | 40.0% |
| AAATCACGTCGCAATCACGA+CGG | - | chr3.1:27273555-27273574 | None:intergenic | 45.0% | |
| AAATTCTGGGCCCAGATAAG+AGG | + | chr3.1:27273145-27273164 | MS.gene046830:CDS | 45.0% | |
| AACTCTGACACTGTTGTGGA+AGG | + | chr3.1:27272769-27272788 | MS.gene046830:CDS | 45.0% | |
| AGACAAGTGTTCCCTCTCTA+GGG | - | chr3.1:27273034-27273053 | None:intergenic | 45.0% | |
| ATGGACACTGATGCTTCTGA+TGG | + | chr3.1:27273255-27273274 | MS.gene046830:intron | 45.0% | |
| ATTGTGACAAACCAGAAGGC+TGG | + | chr3.1:27272856-27272875 | MS.gene046830:CDS | 45.0% | |
| CAATCTGGAAATGAGGCAGT+TGG | + | chr3.1:27272694-27272713 | MS.gene046830:CDS | 45.0% | |
| CCCCTAGCAATGAAGAATCA+TGG | + | chr3.1:27274108-27274127 | MS.gene046830:intron | 45.0% | |
| CTCCATTCTTAGAGGTTCCT+AGG | + | chr3.1:27273058-27273077 | MS.gene046830:CDS | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr3.1:27274377-27274396 | MS.gene046830:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr3.1:27274599-27274618 | MS.gene046830:CDS | 45.0% | |
| GACAACATCAGACAGTCCAT+TGG | + | chr3.1:27274331-27274350 | MS.gene046830:CDS | 45.0% | |
| GATAGCTGGAAAAACGGTGT+CGG | - | chr3.1:27273618-27273637 | None:intergenic | 45.0% | |
| GCAATGTTCACCGGTGAAAT+CGG | - | chr3.1:27273499-27273518 | None:intergenic | 45.0% | |
| GCCTATCAGTCTAAATGTGG+AGG | + | chr3.1:27273002-27273021 | MS.gene046830:CDS | 45.0% | |
| GCGAAAACGGAGAAAGATTG+TGG | - | chr3.1:27273388-27273407 | None:intergenic | 45.0% | |
| GCTGGAGATAGCTGGAAAAA+CGG | - | chr3.1:27273624-27273643 | None:intergenic | 45.0% | |
| GTAGTGATAGGAGTGATGCT+AGG | - | chr3.1:27273117-27273136 | None:intergenic | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr3.1:27274775-27274794 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr3.1:27274386-27274405 | None:intergenic | 45.0% | |
| TTGTGACAAACCAGAAGGCT+GGG | + | chr3.1:27272857-27272876 | MS.gene046830:CDS | 45.0% | |
| ! | CTAGGAACCTCTAAGAATGG+AGG | - | chr3.1:27273060-27273079 | None:intergenic | 45.0% |
| ! | TCCCTAGGAACCTCTAAGAA+TGG | - | chr3.1:27273063-27273082 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3.1:27274389-27274408 | MS.gene046830:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr3.1:27274029-27274048 | MS.gene046830:intron | 45.0% |
| !!! | AGCTTTTTTCAAGGGAGGCT+AGG | + | chr3.1:27272935-27272954 | MS.gene046830:CDS | 45.0% |
| AATCACGTCGCAATCACGAC+GGG | - | chr3.1:27273554-27273573 | None:intergenic | 50.0% | |
| CAATCACACCGTTACGAAGC+CGG | - | chr3.1:27273474-27273493 | None:intergenic | 50.0% | |
| CGGAAAACCACGTCGGAAAT+CGG | - | chr3.1:27273454-27273473 | None:intergenic | 50.0% | |
| GAGACAAGTGTTCCCTCTCT+AGG | - | chr3.1:27273035-27273054 | None:intergenic | 50.0% | |
| GTCTCCTCCTCCATTCTTAG+AGG | + | chr3.1:27273050-27273069 | MS.gene046830:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr3.1:27274602-27274621 | MS.gene046830:CDS | 50.0% | |
| TCTGACACTGTTGTGGAAGG+TGG | + | chr3.1:27272772-27272791 | MS.gene046830:CDS | 50.0% | |
| TTGTTGGATTCCCAGCCTTC+TGG | - | chr3.1:27272870-27272889 | None:intergenic | 50.0% | |
| ! | CGATTTCCGACGTGGTTTTC+CGG | + | chr3.1:27273452-27273471 | MS.gene046830:CDS | 50.0% |
| ! | GGAACCTCTAAGAATGGAGG+AGG | - | chr3.1:27273057-27273076 | None:intergenic | 50.0% |
| ! | GGGTCTGAGTTGAGAACCAT+AGG | - | chr3.1:27273365-27273384 | None:intergenic | 50.0% |
| ! | GTGGTTTTCCGGCTTCGTAA+CGG | + | chr3.1:27273463-27273482 | MS.gene046830:CDS | 50.0% |
| !! | TGTGATTGCGCCGATTTCAC+CGG | + | chr3.1:27273486-27273505 | MS.gene046830:CDS | 50.0% |
| ACGAAGCCGGAAAACCACGT+CGG | - | chr3.1:27273461-27273480 | None:intergenic | 55.0% | |
| ACGGGAAAACGACGTCGAAG+CGG | - | chr3.1:27273536-27273555 | None:intergenic | 55.0% | |
| CACTGTTGTGGAAGGTGGTG+AGG | + | chr3.1:27272777-27272796 | MS.gene046830:CDS | 55.0% | |
| CTTTGCTCCGATTTCCGACG+TGG | + | chr3.1:27273444-27273463 | MS.gene046830:CDS | 55.0% | |
| GCGACGTGATTTCACCGTCT+AGG | + | chr3.1:27273563-27273582 | MS.gene046830:intron | 55.0% | |
| GGAGGACACTTCCCTAGAGA+GGG | + | chr3.1:27273020-27273039 | MS.gene046830:CDS | 55.0% | |
| TGGAGGACACTTCCCTAGAG+AGG | + | chr3.1:27273019-27273038 | MS.gene046830:CDS | 55.0% | |
| ! | GGTGTCGGACCGATGAGAAA+GGG | - | chr3.1:27273603-27273622 | None:intergenic | 55.0% |
| ! | CGGTGTCGGACCGATGAGAA+AGG | - | chr3.1:27273604-27273623 | None:intergenic | 60.0% |
| GGAGGCTAGGCCAGCTGACA+TGG | + | chr3.1:27272948-27272967 | MS.gene046830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 27272580 | 27275089 | 27272580 | ID=MS.gene046830 |
| chr3.1 | mRNA | 27272580 | 27275089 | 27272580 | ID=MS.gene046830.t1;Parent=MS.gene046830 |
| chr3.1 | exon | 27272580 | 27273199 | 27272580 | ID=MS.gene046830.t1.exon1;Parent=MS.gene046830.t1 |
| chr3.1 | CDS | 27272580 | 27273199 | 27272580 | ID=cds.MS.gene046830.t1;Parent=MS.gene046830.t1 |
| chr3.1 | exon | 27273381 | 27273507 | 27273381 | ID=MS.gene046830.t1.exon2;Parent=MS.gene046830.t1 |
| chr3.1 | CDS | 27273381 | 27273507 | 27273381 | ID=cds.MS.gene046830.t1;Parent=MS.gene046830.t1 |
| chr3.1 | exon | 27273585 | 27273667 | 27273585 | ID=MS.gene046830.t1.exon3;Parent=MS.gene046830.t1 |
| chr3.1 | CDS | 27273585 | 27273667 | 27273585 | ID=cds.MS.gene046830.t1;Parent=MS.gene046830.t1 |
| chr3.1 | exon | 27274115 | 27274905 | 27274115 | ID=MS.gene046830.t1.exon4;Parent=MS.gene046830.t1 |
| chr3.1 | CDS | 27274115 | 27274905 | 27274115 | ID=cds.MS.gene046830.t1;Parent=MS.gene046830.t1 |
| chr3.1 | exon | 27275082 | 27275089 | 27275082 | ID=MS.gene046830.t1.exon5;Parent=MS.gene046830.t1 |
| chr3.1 | CDS | 27275082 | 27275089 | 27275082 | ID=cds.MS.gene046830.t1;Parent=MS.gene046830.t1 |
| Gene Sequence |
| Protein sequence |
