AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046859.t1 MTR_6g460640 81.002 579 88 6 1 566 91 660 0.0 909
MS.gene046859.t1 MTR_6g060600 80.723 581 82 6 1 566 91 656 0.0 897
MS.gene046859.t1 MTR_3g010790 48.537 581 215 15 1 575 1 503 1.55e-166 483
MS.gene046859.t1 MTR_3g078770 59.149 235 87 4 1 233 106 333 1.92e-93 299
MS.gene046859.t1 MTR_5g087790 57.895 228 95 1 1 228 103 329 1.15e-89 289
MS.gene046859.t1 MTR_2g098470 59.500 200 78 2 1 200 94 290 2.13e-80 265
MS.gene046859.t1 MTR_3g087530 51.961 204 85 4 1 197 83 280 8.49e-71 234
MS.gene046859.t1 MTR_8g091370 51.500 200 93 3 1 197 73 271 2.68e-68 228
MS.gene046859.t1 MTR_6g060630 63.784 185 41 4 364 522 23 207 1.78e-63 207
MS.gene046859.t1 MTR_1g024420 95.349 43 2 0 1 43 66 108 1.02e-23 96.7
MS.gene046859.t1 MTR_7g095580 55.769 52 23 0 3 54 14 65 7.52e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046859.t1 AT3G20770 41.647 425 210 11 1 395 103 519 3.53e-89 288
MS.gene046859.t1 AT2G27050 62.136 206 74 2 1 204 104 307 9.71e-88 283
MS.gene046859.t1 AT1G73730 58.500 200 78 2 1 200 94 288 4.23e-78 257
MS.gene046859.t1 AT1G73730 58.500 200 78 2 1 200 82 276 4.44e-78 257
MS.gene046859.t1 AT5G10120 54.271 199 89 1 1 197 77 275 4.32e-74 244
MS.gene046859.t1 AT5G65100 52.683 205 90 5 1 201 107 308 3.10e-68 231
MS.gene046859.t1 AT5G21120 49.754 203 100 2 1 201 112 314 3.66e-64 219
MS.gene046859.t1 AT5G21120 49.754 203 100 2 1 201 105 307 4.14e-64 219
MS.gene046859.t1 AT5G21120 49.754 203 100 2 1 201 105 307 4.14e-64 219

Find 108 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTATTGATTCCCTTTC+TGG 0.088324 6.1:+59096270 None:intergenic
TTCTCACATTTCTCTCTTGC+TGG 0.213662 6.1:+59097944 None:intergenic
CAAATCCAGCCATTTGAAAT+TGG 0.219585 6.1:+59097857 None:intergenic
AGGAGAAGTGGTTTCTAATT+TGG 0.225868 6.1:-59096918 MS.gene046859:CDS
TTCAGCAAGTCGAATGTAAT+TGG 0.265774 6.1:+59098579 None:intergenic
CGGAGATTTCCATTGGAAAA+AGG 0.266811 6.1:-59098489 MS.gene046859:CDS
GCTAAATATGAAGCAGAAAA+TGG 0.280618 6.1:-59098639 MS.gene046859:CDS
CTTGTTGACCATAGAAATTT+TGG 0.290385 6.1:+59096504 None:intergenic
CCATTTGAGGCTGCATGTTT+TGG 0.297794 6.1:+59096528 None:intergenic
AGATCATGAGGCTTTCTATA+AGG 0.298040 6.1:+59098387 None:intergenic
CTTTGATTGACACCGTGATT+TGG 0.301125 6.1:+59096749 None:intergenic
CCAAATGGTTGTTTCCTTGA+TGG 0.335310 6.1:+59098251 None:intergenic
TTCCTAATCTTCTGAATGTT+AGG 0.342602 6.1:+59098312 None:intergenic
TTGGTGGACATATATAATTC+AGG 0.344290 6.1:-59096899 MS.gene046859:CDS
GATCATGAGGCTTTCTATAA+GGG 0.348589 6.1:+59098388 None:intergenic
CCTCCACCATGGTGGCCAAC+TGG 0.352128 6.1:-59098462 MS.gene046859:CDS
GGTTTGGAAGGTTTATGTTT+TGG 0.353709 6.1:-59098358 MS.gene046859:CDS
GATGCTCGTGGCTTCATCTA+TGG 0.357885 6.1:-59098765 MS.gene046859:CDS
GTGAACATGGTTTCAACTCT+TGG 0.369048 6.1:-59096557 MS.gene046859:CDS
GCGGCACTAATGATGATAGA+AGG 0.375221 6.1:+59098529 None:intergenic
TGATAGAAGGGAACTTAATA+TGG 0.382620 6.1:+59098542 None:intergenic
AACAACCAATTTCAAATGGC+TGG 0.404663 6.1:-59097862 MS.gene046859:CDS
CAAATGGACCAAAATTTCTA+TGG 0.408363 6.1:-59096512 MS.gene046859:CDS
CCAAAACATGCAGCCTCAAA+TGG 0.412132 6.1:-59096528 MS.gene046859:CDS
ATGAGATTTAGTGAAGATCT+TGG 0.413274 6.1:-59098417 MS.gene046859:CDS
CTCCTAACATTCAGAAGATT+AGG 0.416065 6.1:-59098314 MS.gene046859:CDS
CCATCAAGGAAACAACCATT+TGG 0.416226 6.1:-59098251 MS.gene046859:CDS
CACTTGCATGGTAGATTTGA+TGG 0.428886 6.1:+59096807 None:intergenic
CGCCATGATTCTTTCCCAGT+TGG 0.436325 6.1:+59098447 None:intergenic
CTCATGATCTGAAGAAGGTT+TGG 0.440824 6.1:-59098374 MS.gene046859:CDS
CAGGTACATGTTAAAGATGA+TGG 0.441014 6.1:-59098796 None:intergenic
CTCTCTATGTTCTACCAGAA+AGG 0.455351 6.1:-59096284 MS.gene046859:CDS
ACATTAGCTACTTCAGCATT+AGG 0.464999 6.1:+59096449 None:intergenic
AACAAGAGAAAACGTGAACT+TGG 0.466849 6.1:-59098015 MS.gene046859:CDS
GTTGAGGTATTTGCTTGCAT+TGG 0.470104 6.1:+59096425 None:intergenic
CGACAACAACCAATTTCAAA+TGG 0.471802 6.1:-59097866 MS.gene046859:CDS
AGAAGTGGTTTCTAATTTGG+TGG 0.482339 6.1:-59096915 MS.gene046859:CDS
CATCAGAAAATTTACGAGGC+TGG 0.485103 6.1:-59098707 MS.gene046859:CDS
AATCAGATCATTCATCATAC+AGG 0.485290 6.1:-59097766 MS.gene046859:intron
GTTGAAACCATGTTCACAAC+TGG 0.487578 6.1:+59096563 None:intergenic
ACGTGTGCAAGCTGCGGTAC+CGG 0.490700 6.1:-59097794 MS.gene046859:CDS
ACAAATTATGAAAAGTTGAA+TGG 0.493728 6.1:-59098606 MS.gene046859:CDS
CTCCACCATGGTGGCCAACT+GGG 0.496691 6.1:-59098461 MS.gene046859:CDS
ATTAATAATAGCAAACCAAA+TGG 0.502082 6.1:+59098236 None:intergenic
AAGGGAACTTAATATGGTAT+CGG 0.502090 6.1:+59098548 None:intergenic
TCTCTATGTTCTACCAGAAA+GGG 0.504574 6.1:-59096283 MS.gene046859:CDS
TCTTTCCCAGTTGGCCACCA+TGG 0.508797 6.1:+59098456 None:intergenic
AGGGAACTTAATATGGTATC+GGG 0.509697 6.1:+59098549 None:intergenic
CCAGTTGGCCACCATGGTGG+AGG 0.511934 6.1:+59098462 None:intergenic
AATGGAAATCTCCGTTGTGG+TGG 0.514931 6.1:+59098498 None:intergenic
ACCACAACGGAGATTTCCAT+TGG 0.522988 6.1:-59098496 MS.gene046859:CDS
TTCAATGCCAGTTGTGAACA+TGG 0.524136 6.1:-59096570 MS.gene046859:CDS
TGAATCAAAGGTTGTTGTTG+AGG 0.525190 6.1:+59096409 None:intergenic
TTATGATTAACACCGGGAGT+TGG 0.525458 6.1:+59096836 None:intergenic
CAAACCTTCTTCAGATCATG+AGG 0.527892 6.1:+59098375 None:intergenic
GGTAATTACTCAAGAGGAGG+AGG 0.532257 6.1:-59096938 MS.gene046859:CDS
GGCCAACTGGGAAAGAATCA+TGG 0.537608 6.1:-59098449 MS.gene046859:CDS
TGATCTGAAGAAGGTTTGGA+AGG 0.544263 6.1:-59098370 MS.gene046859:CDS
CTCATTGGTTTGCCCTCGTG+AGG 0.546764 6.1:+59098735 None:intergenic
TCATATTTAGCAATTGCCGC+TGG 0.547452 6.1:+59098651 None:intergenic
CTCAAGAGGAGGAGGAGAAG+TGG 0.550268 6.1:-59096930 MS.gene046859:CDS
CAGAAAATTTACGAGGCTGG+TGG 0.554585 6.1:-59098704 MS.gene046859:CDS
ATGATCAAAAGATGAATCAA+AGG 0.559551 6.1:+59096397 None:intergenic
GCTTGCACACGTTGGTCAAG+AGG 0.560353 6.1:+59097805 None:intergenic
CAAAATTTCTATGGTCAACA+AGG 0.561024 6.1:-59096503 MS.gene046859:CDS
TGAATGATCTGATTTGCAAC+CGG 0.563371 6.1:+59097775 None:intergenic
CATCATTGAAGTATTCATCA+TGG 0.563846 6.1:+59096598 None:intergenic
TTCCCAGTTGGCCACCATGG+TGG 0.564701 6.1:+59098459 None:intergenic
ACAAGATAAACTCACCATCA+AGG 0.566981 6.1:-59098265 MS.gene046859:CDS
TCCAATGGAAATCTCCGTTG+TGG 0.567968 6.1:+59098495 None:intergenic
TCTTCTGTTGAACACTTGCA+TGG 0.569159 6.1:+59096795 None:intergenic
ATCATCGTCATCGTCGCATG+AGG 0.570106 6.1:-59098043 MS.gene046859:CDS
ATTTATTGACTCTCCTACTG+TGG 0.570724 6.1:-59096324 MS.gene046859:CDS
AAAGCCTCATGATCTGAAGA+AGG 0.573569 6.1:-59098379 MS.gene046859:CDS
ATTAACACTAGTACTCATGA+TGG 0.574312 6.1:+59096679 None:intergenic
AAGTAATTATGTGCTTGTTG+AGG 0.574583 6.1:-59098145 MS.gene046859:CDS
ATCATGAGGCTTTCTATAAG+GGG 0.587351 6.1:+59098389 None:intergenic
CGGCACTAATGATGATAGAA+GGG 0.589144 6.1:+59098530 None:intergenic
CACTTTACTAGTACACAACT+AGG 0.591972 6.1:-59097913 MS.gene046859:CDS
ATGGAAATCTCCGTTGTGGT+GGG 0.597513 6.1:+59098499 None:intergenic
CTATGGAGTAATACCTCACG+AGG 0.599594 6.1:-59098748 MS.gene046859:CDS
GTGCATGTTATGATTAACAC+CGG 0.611942 6.1:+59096829 None:intergenic
TACGCAGGTAATTACTCAAG+AGG 0.612585 6.1:-59096944 MS.gene046859:intron
TAACTTGATGATGCCACAGT+AGG 0.612606 6.1:+59096311 None:intergenic
AGTACGATGATTCCAACTCC+CGG 0.614991 6.1:-59096848 MS.gene046859:CDS
GGAACATTGTCAAACAGTCA+AGG 0.625113 6.1:-59098293 MS.gene046859:CDS
TCATCGTCATCGTCGCATGA+GGG 0.630122 6.1:-59098042 MS.gene046859:CDS
CAAGTGTTCATGAACATCAG+AGG 0.645229 6.1:-59096628 MS.gene046859:CDS
TGGAATTCATGTTGATCAAG+AGG 0.645230 6.1:+59097964 None:intergenic
TGGAATCATCGTACTCATGA+CGG 0.645856 6.1:+59096856 None:intergenic
CGTTGTGGTGGGTCGCAATG+CGG 0.647311 6.1:+59098510 None:intergenic
CGCATTGCGACCCACCACAA+CGG 0.648689 6.1:-59098509 MS.gene046859:CDS
ATGCATCGTCAAATCTACAC+TGG 0.648883 6.1:-59096725 MS.gene046859:CDS
ATGGAAGTTTGTGATGCTCG+TGG 0.649462 6.1:-59098777 MS.gene046859:CDS
AATTTCTATGGTCAACAAGG+AGG 0.662002 6.1:-59096500 MS.gene046859:CDS
TGACCAACGTGTGCAAGCTG+CGG 0.662625 6.1:-59097800 MS.gene046859:CDS
GCAGGTAATTACTCAAGAGG+AGG 0.664591 6.1:-59096941 MS.gene046859:intron
CACGAGGGCAAACCAATGAG+TGG 0.675933 6.1:-59098732 MS.gene046859:CDS
TCATGAGGCTTTCTATAAGG+GGG 0.678672 6.1:+59098390 None:intergenic
AGTACTACGATTCCAAATCA+CGG 0.680406 6.1:-59096761 MS.gene046859:CDS
ACACTTGAAGTGAAGACTTG+AGG 0.693583 6.1:+59096644 None:intergenic
TGCATGTTATGATTAACACC+GGG 0.698948 6.1:+59096830 None:intergenic
AAGGCATTCCTCCACCATGG+TGG 0.706316 6.1:-59098470 MS.gene046859:CDS
GGTTCATCAGAAAATTTACG+AGG 0.727192 6.1:-59098711 MS.gene046859:CDS
GACGATGACGATGATGATGA+CGG 0.736697 6.1:+59098051 None:intergenic
GTACCGCAGCTTGCACACGT+TGG 0.738322 6.1:+59097797 None:intergenic
CAACTGGGAAAGAATCATGG+CGG 0.758935 6.1:-59098446 MS.gene046859:CDS
TATGGAGTAATACCTCACGA+GGG 0.784582 6.1:-59098747 MS.gene046859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATTTTTATTTAAAT+AGG - chr6.1:59097474-59097493 MS.gene046859:intron 10.0%
!!! TTTTATTTTTTCTATGTATT+TGG - chr6.1:59098042-59098061 MS.gene046859:CDS 10.0%
!! TCTTAATTATTATGAATTGT+AGG + chr6.1:59097606-59097625 None:intergenic 15.0%
!!! TAAATGATATATTAGCTTAT+AGG - chr6.1:59097423-59097442 MS.gene046859:intron 15.0%
!! ACAAATTATGAAAAGTTGAA+TGG - chr6.1:59096457-59096476 MS.gene046859:CDS 20.0%
!! ATAGGAAAATGTTAGATTAT+AGG - chr6.1:59097492-59097511 MS.gene046859:intron 20.0%
!! ATAGTTAAATTCGACAAAAA+CGG - chr6.1:59096388-59096407 MS.gene046859:CDS 20.0%
!! ATTAATAATAGCAAACCAAA+TGG + chr6.1:59096830-59096849 None:intergenic 20.0%
!! CTACTTCATTATATATTACT+TGG - chr6.1:59097767-59097786 MS.gene046859:CDS 20.0%
!! TTTAAACCAACAAAATTGTT+TGG + chr6.1:59097798-59097817 None:intergenic 20.0%
! ATGATCAAAAGATGAATCAA+AGG + chr6.1:59098669-59098688 None:intergenic 25.0%
! CTTATATGAAGCTAACATTA+TGG + chr6.1:59097575-59097594 None:intergenic 25.0%
! GATTCAAGTCATAAATCAAA+TGG + chr6.1:59097382-59097401 None:intergenic 25.0%
! TCAAAACTTGAGAAAAATTC+AGG + chr6.1:59096883-59096902 None:intergenic 25.0%
! TGCTTGTTTCAAACTTAAAA+AGG - chr6.1:59097456-59097475 MS.gene046859:intron 25.0%
!! ACAATTTGTTTATGAATCTG+GGG - chr6.1:59097662-59097681 MS.gene046859:intron 25.0%
!! CACAATTTGTTTATGAATCT+GGG - chr6.1:59097661-59097680 MS.gene046859:intron 25.0%
!! TAGATTATAGGTCTCAATTT+TGG - chr6.1:59097504-59097523 MS.gene046859:intron 25.0%
!! TCACAATTTGTTTATGAATC+TGG - chr6.1:59097660-59097679 MS.gene046859:intron 25.0%
!!! CCAGAATTATTTTTCTTTTG+GGG + chr6.1:59097721-59097740 None:intergenic 25.0%
!!! GCCAGAATTATTTTTCTTTT+GGG + chr6.1:59097722-59097741 None:intergenic 25.0%
!!! TGCCAGAATTATTTTTCTTT+TGG + chr6.1:59097723-59097742 None:intergenic 25.0%
AAGCTAACATTATGGTAAGA+TGG + chr6.1:59097567-59097586 None:intergenic 30.0%
AAGGGAACTTAATATGGTAT+CGG + chr6.1:59096518-59096537 None:intergenic 30.0%
AATCAGATCATTCATCATAC+AGG - chr6.1:59097297-59097316 MS.gene046859:intron 30.0%
ATGAGATTTAGTGAAGATCT+TGG - chr6.1:59096646-59096665 MS.gene046859:CDS 30.0%
ATTAACACTAGTACTCATGA+TGG + chr6.1:59098387-59098406 None:intergenic 30.0%
ATTCATCATACAGGTAATCA+TGG - chr6.1:59097306-59097325 MS.gene046859:intron 30.0%
CAAAATTTCTATGGTCAACA+AGG - chr6.1:59098560-59098579 MS.gene046859:CDS 30.0%
CAAATGGACCAAAATTTCTA+TGG - chr6.1:59098551-59098570 MS.gene046859:CDS 30.0%
CCCCAAAAGAAAAATAATTC+TGG - chr6.1:59097718-59097737 MS.gene046859:intron 30.0%
GCTAAATATGAAGCAGAAAA+TGG - chr6.1:59096424-59096443 MS.gene046859:CDS 30.0%
GTTATGGAATCAATAATCAG+CGG + chr6.1:59098099-59098118 None:intergenic 30.0%
TGATAGAAGGGAACTTAATA+TGG + chr6.1:59096524-59096543 None:intergenic 30.0%
TTCCTAATCTTCTGAATGTT+AGG + chr6.1:59096754-59096773 None:intergenic 30.0%
! AAGCTAACACAATTTTTACG+AGG + chr6.1:59098071-59098090 None:intergenic 30.0%
! AAGTAATTATGTGCTTGTTG+AGG - chr6.1:59096918-59096937 MS.gene046859:CDS 30.0%
! AGCTAACACAATTTTTACGA+GGG + chr6.1:59098070-59098089 None:intergenic 30.0%
! CATCATTGAAGTATTCATCA+TGG + chr6.1:59098468-59098487 None:intergenic 30.0%
! CTTGTTGACCATAGAAATTT+TGG + chr6.1:59098562-59098581 None:intergenic 30.0%
! TTGGTGGACATATATAATTC+AGG - chr6.1:59098164-59098183 MS.gene046859:CDS 30.0%
!! AATGATTTTGATGTTGTGGA+AGG - chr6.1:59096943-59096962 MS.gene046859:intron 30.0%
!! GGAAAATGATTTTGATGTTG+TGG - chr6.1:59096939-59096958 MS.gene046859:CDS 30.0%
!! TAGAAATTTTGGTCCATTTG+AGG + chr6.1:59098551-59098570 None:intergenic 30.0%
!! TGACTCATGCTTTAGAAAAT+AGG - chr6.1:59097628-59097647 MS.gene046859:intron 30.0%
!!! AGTTTTGATTCTTGTGTTGA+AGG - chr6.1:59096895-59096914 MS.gene046859:CDS 30.0%
AACAACCAATTTCAAATGGC+TGG - chr6.1:59097201-59097220 MS.gene046859:intron 35.0%
AACAAGAGAAAACGTGAACT+TGG - chr6.1:59097048-59097067 MS.gene046859:intron 35.0%
AATGCTACTCATTGATGTGA+AGG + chr6.1:59097693-59097712 None:intergenic 35.0%
AATTTCTATGGTCAACAAGG+AGG - chr6.1:59098563-59098582 MS.gene046859:CDS 35.0%
ACAAGATAAACTCACCATCA+AGG - chr6.1:59096798-59096817 MS.gene046859:CDS 35.0%
ACATTAGCTACTTCAGCATT+AGG + chr6.1:59098617-59098636 None:intergenic 35.0%
AGAAGTGGTTTCTAATTTGG+TGG - chr6.1:59098148-59098167 MS.gene046859:CDS 35.0%
AGATCATGAGGCTTTCTATA+AGG + chr6.1:59096679-59096698 None:intergenic 35.0%
AGGAGAAGTGGTTTCTAATT+TGG - chr6.1:59098145-59098164 MS.gene046859:CDS 35.0%
AGGGAACTTAATATGGTATC+GGG + chr6.1:59096517-59096536 None:intergenic 35.0%
AGTAATTACCTGCGTAGTTA+TGG + chr6.1:59098115-59098134 None:intergenic 35.0%
AGTACTACGATTCCAAATCA+CGG - chr6.1:59098302-59098321 MS.gene046859:CDS 35.0%
ATCATGAGGCTTTCTATAAG+GGG + chr6.1:59096677-59096696 None:intergenic 35.0%
CACTTTACTAGTACACAACT+AGG - chr6.1:59097150-59097169 MS.gene046859:intron 35.0%
CGACAACAACCAATTTCAAA+TGG - chr6.1:59097197-59097216 MS.gene046859:intron 35.0%
CTCCTAACATTCAGAAGATT+AGG - chr6.1:59096749-59096768 MS.gene046859:CDS 35.0%
GATCATGAGGCTTTCTATAA+GGG + chr6.1:59096678-59096697 None:intergenic 35.0%
GGTTCATCAGAAAATTTACG+AGG - chr6.1:59096352-59096371 MS.gene046859:CDS 35.0%
GTGCATGTTATGATTAACAC+CGG + chr6.1:59098237-59098256 None:intergenic 35.0%
TCTCTATGTTCTACCAGAAA+GGG - chr6.1:59098780-59098799 MS.gene046859:CDS 35.0%
TGCATGTTATGATTAACACC+GGG + chr6.1:59098236-59098255 None:intergenic 35.0%
TGGAATTCATGTTGATCAAG+AGG + chr6.1:59097102-59097121 None:intergenic 35.0%
TTCACATCAATGAGTAGCAT+TGG - chr6.1:59097692-59097711 MS.gene046859:intron 35.0%
TTCAGCAAGTCGAATGTAAT+TGG + chr6.1:59096487-59096506 None:intergenic 35.0%
! CAAATCCAGCCATTTGAAAT+TGG + chr6.1:59097209-59097228 None:intergenic 35.0%
! CTAACACAATTTTTACGAGG+GGG + chr6.1:59098068-59098087 None:intergenic 35.0%
! GCAACTCCAAACAATTTTGT+TGG - chr6.1:59097789-59097808 MS.gene046859:CDS 35.0%
! GCTAACACAATTTTTACGAG+GGG + chr6.1:59098069-59098088 None:intergenic 35.0%
! GGTTTGGAAGGTTTATGTTT+TGG - chr6.1:59096705-59096724 MS.gene046859:CDS 35.0%
! TGAATCAAAGGTTGTTGTTG+AGG + chr6.1:59098657-59098676 None:intergenic 35.0%
! TGAATGATCTGATTTGCAAC+CGG + chr6.1:59097291-59097310 None:intergenic 35.0%
! TTTTCTGATGAACCACTCAT+TGG + chr6.1:59096346-59096365 None:intergenic 35.0%
!! ATTTATTGACTCTCCTACTG+TGG - chr6.1:59098739-59098758 MS.gene046859:CDS 35.0%
!! TATTGATTCCATAACTACGC+AGG - chr6.1:59098104-59098123 MS.gene046859:CDS 35.0%
AAAGCCTCATGATCTGAAGA+AGG - chr6.1:59096684-59096703 MS.gene046859:CDS 40.0%
ACACTTGAAGTGAAGACTTG+AGG + chr6.1:59098422-59098441 None:intergenic 40.0%
ATGCATCGTCAAATCTACAC+TGG - chr6.1:59098338-59098357 MS.gene046859:CDS 40.0%
ATGGAATCAATAATCAGCGG+CGG + chr6.1:59098096-59098115 None:intergenic 40.0%
CAAACCTTCTTCAGATCATG+AGG + chr6.1:59096691-59096710 None:intergenic 40.0%
CAAGTGTTCATGAACATCAG+AGG - chr6.1:59098435-59098454 MS.gene046859:CDS 40.0%
CACTTGCATGGTAGATTTGA+TGG + chr6.1:59098259-59098278 None:intergenic 40.0%
CATCAGAAAATTTACGAGGC+TGG - chr6.1:59096356-59096375 MS.gene046859:CDS 40.0%
CCATCAAGGAAACAACCATT+TGG - chr6.1:59096812-59096831 MS.gene046859:CDS 40.0%
CGGAGATTTCCATTGGAAAA+AGG - chr6.1:59096574-59096593 MS.gene046859:CDS 40.0%
CGGCACTAATGATGATAGAA+GGG + chr6.1:59096536-59096555 None:intergenic 40.0%
CTCATGATCTGAAGAAGGTT+TGG - chr6.1:59096689-59096708 MS.gene046859:CDS 40.0%
CTCTCTATGTTCTACCAGAA+AGG - chr6.1:59098779-59098798 MS.gene046859:CDS 40.0%
CTTTGATTGACACCGTGATT+TGG + chr6.1:59098317-59098336 None:intergenic 40.0%
GGAACATTGTCAAACAGTCA+AGG - chr6.1:59096770-59096789 MS.gene046859:CDS 40.0%
GTGAACATGGTTTCAACTCT+TGG - chr6.1:59098506-59098525 MS.gene046859:CDS 40.0%
GTTGAAACCATGTTCACAAC+TGG + chr6.1:59098503-59098522 None:intergenic 40.0%
TACGCAGGTAATTACTCAAG+AGG - chr6.1:59098119-59098138 MS.gene046859:CDS 40.0%
TATGGAGTAATACCTCACGA+GGG - chr6.1:59096316-59096335 MS.gene046859:CDS 40.0%
TCATATTTAGCAATTGCCGC+TGG + chr6.1:59096415-59096434 None:intergenic 40.0%
TCATGAGGCTTTCTATAAGG+GGG + chr6.1:59096676-59096695 None:intergenic 40.0%
TCTTCTGTTGAACACTTGCA+TGG + chr6.1:59098271-59098290 None:intergenic 40.0%
TGATCTGAAGAAGGTTTGGA+AGG - chr6.1:59096693-59096712 MS.gene046859:CDS 40.0%
TGGAATCATCGTACTCATGA+CGG + chr6.1:59098210-59098229 None:intergenic 40.0%
TTATGATTAACACCGGGAGT+TGG + chr6.1:59098230-59098249 None:intergenic 40.0%
TTCAATGCCAGTTGTGAACA+TGG - chr6.1:59098493-59098512 MS.gene046859:CDS 40.0%
TTCTCACATTTCTCTCTTGC+TGG + chr6.1:59097122-59097141 None:intergenic 40.0%
! CCAAATGGTTGTTTCCTTGA+TGG + chr6.1:59096815-59096834 None:intergenic 40.0%
! GTTGAGGTATTTGCTTGCAT+TGG + chr6.1:59098641-59098660 None:intergenic 40.0%
!! CTCATGACGGTGTTTTTATC+TGG + chr6.1:59098197-59098216 None:intergenic 40.0%
!! GATTTTGATGTTGTGGAAGG+CGG - chr6.1:59096946-59096965 MS.gene046859:intron 40.0%
!! TAACTTGATGATGCCACAGT+AGG + chr6.1:59098755-59098774 None:intergenic 40.0%
AATGGAAATCTCCGTTGTGG+TGG + chr6.1:59096568-59096587 None:intergenic 45.0%
ACCACAACGGAGATTTCCAT+TGG - chr6.1:59096567-59096586 MS.gene046859:CDS 45.0%
AGTACGATGATTCCAACTCC+CGG - chr6.1:59098215-59098234 MS.gene046859:CDS 45.0%
ATGGAAATCTCCGTTGTGGT+GGG + chr6.1:59096567-59096586 None:intergenic 45.0%
ATGGAAGTTTGTGATGCTCG+TGG - chr6.1:59096286-59096305 MS.gene046859:CDS 45.0%
ATTCGACAAAAACGGTCCAG+CGG - chr6.1:59096396-59096415 MS.gene046859:CDS 45.0%
CAACTGGGAAAGAATCATGG+CGG - chr6.1:59096617-59096636 MS.gene046859:CDS 45.0%
CAGAAAATTTACGAGGCTGG+TGG - chr6.1:59096359-59096378 MS.gene046859:CDS 45.0%
CCAAAACATGCAGCCTCAAA+TGG - chr6.1:59098535-59098554 MS.gene046859:CDS 45.0%
CTATGGAGTAATACCTCACG+AGG - chr6.1:59096315-59096334 MS.gene046859:CDS 45.0%
GCAGGTAATTACTCAAGAGG+AGG - chr6.1:59098122-59098141 MS.gene046859:CDS 45.0%
GCGGCACTAATGATGATAGA+AGG + chr6.1:59096537-59096556 None:intergenic 45.0%
GGTAATTACTCAAGAGGAGG+AGG - chr6.1:59098125-59098144 MS.gene046859:CDS 45.0%
TCCAATGGAAATCTCCGTTG+TGG + chr6.1:59096571-59096590 None:intergenic 45.0%
! GACGATGACGATGATGATGA+CGG + chr6.1:59097015-59097034 None:intergenic 45.0%
! GGAGGAATGCCTTTTTCCAA+TGG + chr6.1:59096586-59096605 None:intergenic 45.0%
!! AAAAAGGCATTCCTCCACCA+TGG - chr6.1:59096590-59096609 MS.gene046859:CDS 45.0%
!! CCATTTGAGGCTGCATGTTT+TGG + chr6.1:59098538-59098557 None:intergenic 45.0%
ATCATCGTCATCGTCGCATG+AGG - chr6.1:59097020-59097039 MS.gene046859:intron 50.0%
CGCCATGATTCTTTCCCAGT+TGG + chr6.1:59096619-59096638 None:intergenic 50.0%
GATGCTCGTGGCTTCATCTA+TGG - chr6.1:59096298-59096317 MS.gene046859:CDS 50.0%
GGCCAACTGGGAAAGAATCA+TGG - chr6.1:59096614-59096633 MS.gene046859:CDS 50.0%
TCATCGTCATCGTCGCATGA+GGG - chr6.1:59097021-59097040 MS.gene046859:intron 50.0%
CACGAGGGCAAACCAATGAG+TGG - chr6.1:59096331-59096350 MS.gene046859:CDS 55.0%
CTCAAGAGGAGGAGGAGAAG+TGG - chr6.1:59098133-59098152 MS.gene046859:CDS 55.0%
GCTTGCACACGTTGGTCAAG+AGG + chr6.1:59097261-59097280 None:intergenic 55.0%
TCTTTCCCAGTTGGCCACCA+TGG + chr6.1:59096610-59096629 None:intergenic 55.0%
TGACCAACGTGTGCAAGCTG+CGG - chr6.1:59097263-59097282 MS.gene046859:intron 55.0%
! AAGGCATTCCTCCACCATGG+TGG - chr6.1:59096593-59096612 MS.gene046859:CDS 55.0%
!! CTCATTGGTTTGCCCTCGTG+AGG + chr6.1:59096331-59096350 None:intergenic 55.0%
ACGTGTGCAAGCTGCGGTAC+CGG - chr6.1:59097269-59097288 MS.gene046859:intron 60.0%
CGCATTGCGACCCACCACAA+CGG - chr6.1:59096554-59096573 MS.gene046859:CDS 60.0%
CTCCACCATGGTGGCCAACT+GGG - chr6.1:59096602-59096621 MS.gene046859:CDS 60.0%
GTACCGCAGCTTGCACACGT+TGG + chr6.1:59097269-59097288 None:intergenic 60.0%
TTCCCAGTTGGCCACCATGG+TGG + chr6.1:59096607-59096626 None:intergenic 60.0%
!! CGTTGTGGTGGGTCGCAATG+CGG + chr6.1:59096556-59096575 None:intergenic 60.0%
CCAGTTGGCCACCATGGTGG+AGG + chr6.1:59096604-59096623 None:intergenic 65.0%
CCTCCACCATGGTGGCCAAC+TGG - chr6.1:59096601-59096620 MS.gene046859:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 59096274 59098811 59096274 ID=MS.gene046859
chr6.1 mRNA 59096274 59098811 59096274 ID=MS.gene046859.t1;Parent=MS.gene046859
chr6.1 exon 59097767 59098811 59097767 ID=MS.gene046859.t1.exon1;Parent=MS.gene046859.t1
chr6.1 CDS 59097767 59098811 59097767 ID=cds.MS.gene046859.t1;Parent=MS.gene046859.t1
chr6.1 exon 59096274 59096959 59096274 ID=MS.gene046859.t1.exon2;Parent=MS.gene046859.t1
chr6.1 CDS 59096274 59096959 59096274 ID=cds.MS.gene046859.t1;Parent=MS.gene046859.t1
Gene Sequence

>MS.gene046859

ATGTTAAAGATGATGGAAGTTTGTGATGCTCGTGGCTTCATCTATGGAGTAATACCTCACGAGGGCAAACCAATGAGTGGTTCATCAGAAAATTTACGAGGCTGGTGGAAAGACATAGTTAAATTCGACAAAAACGGTCCAGCGGCAATTGCTAAATATGAAGCAGAAAATGGAATTACAACAACAAATTATGAAAAGTTGAATGGTGAACCAATTACATTCGACTTGCTGAATGAACTACCCGATACCATATTAAGTTCCCTTCTATCATCATTAGTGCCGCATTGCGACCCACCACAACGGAGATTTCCATTGGAAAAAGGCATTCCTCCACCATGGTGGCCAACTGGGAAAGAATCATGGCGGAATGAGATGAGATTTAGTGAAGATCTTGGCATACCCCCTTATAGAAAGCCTCATGATCTGAAGAAGGTTTGGAAGGTTTATGTTTTGGCAGCTGTAATAAAACATATGTCTCCTAACATTCAGAAGATTAGGAACATTGTCAAACAGTCAAGGAATTTACAAGATAAACTCACCATCAAGGAAACAACCATTTGGTTTGCTATTATTAATCATGAAGAAACAATTGCAAGAAAACTACATCCTGAATTTTTCTCAAGTTTTGATTCTTGTGTTGAAGGAAGTAATTATGTGCTTGTTGAGGAAAATGATTTTGATGTTGTGGAAGGCGGTGAGCACAATCTAGCAAAACGAAAACTATCATCATCATCTTCACCGTCATCATCATCGTCATCGTCGCATGAGGGTACTAACAAGAGAAAACGTGAACTTGGTAAGAGAATTAGTACTGAACATGCTACACCTCTTGATCAACATGAATTCCAGCAAGAGAGAAATGTGAGAAACAATCATCACTTTACTAGTACACAACTAGGAAGCAGCAACAACATCAACAACAACGACAACAACCAATTTCAAATGGCTGGATTTGTAGTGTCAACAACTCATCAAAATGTTGCACCTCTTGACCAACGTGTGCAAGCTGCGGTACCGGTTGCAAATCAGATCATTCATCATACAGGTAATCATGGTTATCATTATCAAACTCTTTTCTAGTTTGTATAATCAAACTCTTTTTTTGCCATTTGATTTATGACTTGAATCATTGACTTGTTTTGAGATTAGTAAATGATATATTAGCTTATAGGTTTGTCAAGTTGCTTGTTTCAAACTTAAAAAGGTATTTTTATTTAAATAGGAAAATGTTAGATTATAGGTCTCAATTTTGGACATCATTCTTAAAACTTATTAGTGTTACTTAACTCACCATCTTACCATAATGTTAGCTTCATATAAGTTATATATCCTACAATTCATAATAATTAAGATTTGACTCATGCTTTAGAAAATAGGTCTTATAATTCACAATTTGTTTATGAATCTGGGGTGAATCCTTCACATCAATGAGTAGCATTGGCTACCCCAAAAGAAAAATAATTCTGGCATAATTAGTATAGTTTTGAATGTAGCTACTTCATTATATATTACTTGGCAACTCCAAACAATTTTGTTGGTTTAAATAGAGACACTTTTAAAAAAAAATACTTATAATCTATTTAGTTTAGTGTCGATTATAAATAAATTTGACTTGTTAAAATTTCATAGAGTTCAACTTTATTTTATAAATAATTATTGTTAGATTTTATTTTCTTCGTTGTCGTTTCATTAAATATAACTAAAAATTAATTAGTATAAATTTATTTTACTTATTAATTAAGTTTAATATATTAATTTTTAAAATATATTTTATTTTTTCTATGTATTTGGCCCCCTCGTAAAAATTGTGTTAGCTTCGCCGCCGCTGATTATTGATTCCATAACTACGCAGGTAATTACTCAAGAGGAGGAGGAGAAGTGGTTTCTAATTTGGTGGACATATATAATTCAGGCATTCAGCCAGATAAAAACACCGTCATGAGTACGATGATTCCAACTCCCGGTGTTAATCATAACATGCACCATCAAATCTACCATGCAAGTGTTCAACAGAAGAATAACAACATGAGTACTACGATTCCAAATCACGGTGTCAATCAAAGCATGCATCGTCAAATCTACACTGGAAGTGTTCAACAGAACAAGAACACCATCATGAGTACTAGTGTTAATCAAAACTTGCATCCTCAAGTCTTCACTTCAAGTGTTCATGAACATCAGAGGAGCAACACCATGATGAATACTTCAATGATGAGTGCTTCAATGCCAGTTGTGAACATGGTTTCAACTCTTGGATTTAACCAAAACATGCAGCCTCAAATGGACCAAAATTTCTATGGTCAACAAGGAGGTGCAAATAGCTACTATCACTACAAAGTGCCTAATGCTGAAGTAGCTAATGTTCCAATGCAAGCAAATACCTCAACAACAACCTTTGATTCATCTTTTGATCATTTGAATGCATTCAATTCTCAATCTGATATTGATGCTTACTACAACTCTGCATTTATTGACTCTCCTACTGTGGCATCATCAAGTTATGATCTCTCTATGTTCTACCAGAAAGGGAATCAATAA
Protein sequence

>MS.gene046859.t1

MLKMMEVCDARGFIYGVIPHEGKPMSGSSENLRGWWKDIVKFDKNGPAAIAKYEAENGITTTNYEKLNGEPITFDLLNELPDTILSSLLSSLVPHCDPPQRRFPLEKGIPPPWWPTGKESWRNEMRFSEDLGIPPYRKPHDLKKVWKVYVLAAVIKHMSPNIQKIRNIVKQSRNLQDKLTIKETTIWFAIINHEETIARKLHPEFFSSFDSCVEGSNYVLVEENDFDVVEGGEHNLAKRKLSSSSSPSSSSSSSHEGTNKRKRELGKRISTEHATPLDQHEFQQERNVRNNHHFTSTQLGSSNNINNNDNNQFQMAGFVVSTTHQNVAPLDQRVQAAVPVANQIIHHTGNYSRGGGEVVSNLVDIYNSGIQPDKNTVMSTMIPTPGVNHNMHHQIYHASVQQKNNNMSTTIPNHGVNQSMHRQIYTGSVQQNKNTIMSTSVNQNLHPQVFTSSVHEHQRSNTMMNTSMMSASMPVVNMVSTLGFNQNMQPQMDQNFYGQQGGANSYYHYKVPNAEVANVPMQANTSTTTFDSSFDHLNAFNSQSDIDAYYNSAFIDSPTVASSSYDLSMFYQKGNQ