AlfalfaGEDB | MS.gene046869

M. sativa cultivar XinJiangDaYe / MS.gene046869

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046869.t1	XP_024626574.1	60.7	356	43	3	1	355	1	260	7.60E-76	295.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046869.t1	Q9SZL8	38.6	158	94	3	214	369	77	233	3.6e-18	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046869.t1	A0A072TYR1	61.6	354	44	3	1	353	1	263	4.6e-75	292.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene046869.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046869.t1	MTR_7g446520	74.178	213	37	1	160	372	38	232	6.45e-102	317
MS.gene046869.t1	MTR_7g446520	70.213	47	14	0	57	103	15	61	2.39e-13	72.4
MS.gene046869.t1	MTR_7g028855	75.234	214	51	1	140	353	52	263	1.54e-100	318
MS.gene046869.t1	MTR_7g028855	57.143	126	29	4	1	125	1	102	9.29e-28	117
MS.gene046869.t1	MTR_7g446480	44.195	267	83	6	134	400	50	250	2.16e-48	174
MS.gene046869.t1	MTR_7g446480	58.197	122	33	3	1	122	1	104	1.83e-29	120
MS.gene046869.t1	MTR_7g446510	81.395	86	16	0	287	372	155	240	6.47e-40	150
MS.gene046869.t1	MTR_7g446510	65.421	107	20	1	394	483	51	157	1.03e-34	135
MS.gene046869.t1	MTR_1g070355	37.888	161	100	0	212	372	76	236	2.18e-29	124
MS.gene046869.t1	MTR_5g076070	31.841	201	134	1	175	375	21	218	1.52e-26	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene046869.t1	AT4G38180	38.608	158	94	3	214	369	77	233	2.02e-16	84.3
MS.gene046869.t1	AT3G07500	36.567	134	79	4	183	315	8	136	3.51e-11	64.3

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Find 167 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATACCCGATCATTGTT+GGG	0.478091	6.1:-58618315	MS.gene046869:CDS
AAAGGGAGGTAGTCAAAGCG+AGG	0.678188	6.1:-58615045	MS.gene046869:CDS
AACAATGTCTTTACTGATTT+TGG	0.059598	6.1:-58618385	MS.gene046869:CDS
AAGAATACTCAAGGGAATAC+AGG	0.512005	6.1:-58618211	MS.gene046869:CDS
AAGGGTGGATATCCACGTGT+TGG	0.561325	6.1:-58617329	MS.gene046869:CDS
AATAAGAACTTGTCATATAA+TGG	0.247315	6.1:-58617369	MS.gene046869:CDS
AATCTGTGCTTTATCTACCT+CGG	0.613894	6.1:+58617412	None:intergenic
AATTATACGAAGAATACTCA+AGG	0.584441	6.1:-58618220	MS.gene046869:CDS
ACTTTGTACGAGTGATACGT+CGG	0.754568	6.1:+58617567	None:intergenic
AGAAAGATGCTCAGTGCTTG+CGG	0.575791	6.1:+58615502	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTTATGTTAGGAAGAA+AGG	-	chr6.1:58616795-58616814	MS.gene046869:intron	30.0%
AGCATTTATCAAGGTTAGAT+AGG	-	chr6.1:58615765-58615784	MS.gene046869:CDS	30.0%
CAAAAAAAAATATGGGAGCA+TGG	+	chr6.1:58617167-58617186	None:intergenic	30.0%
CAAATATAACTGTTTGTGAG+TGG	+	chr6.1:58616341-58616360	None:intergenic	30.0%
CACTCACAAACAGTTATATT+TGG	-	chr6.1:58616339-58616358	MS.gene046869:CDS	30.0%
CATATGAGAACAAAGAATTG+TGG	-	chr6.1:58616694-58616713	MS.gene046869:intron	30.0%
GAAGTTGACAAAATATCTTG+AGG	-	chr6.1:58617061-58617080	MS.gene046869:intron	30.0%
GAATATTCACAAAAGGAATG+TGG	+	chr6.1:58616165-58616184	None:intergenic	30.0%
GTGAAAGAAGAGATTATGAA+AGG	-	chr6.1:58616987-58617006	MS.gene046869:intron	30.0%
TATAAGTACGGTAAGTGTAA+TGG	-	chr6.1:58615647-58615666	MS.gene046869:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	58614969	58618419	58614969	ID=MS.gene046869
chr6.1	mRNA	58614969	58618419	58614969	ID=MS.gene046869.t1;Parent=MS.gene046869
chr6.1	exon	58617311	58618419	58617311	ID=MS.gene046869.t1.exon1;Parent=MS.gene046869.t1
chr6.1	CDS	58617311	58618419	58617311	ID=cds.MS.gene046869.t1;Parent=MS.gene046869.t1
chr6.1	exon	58616228	58616486	58616228	ID=MS.gene046869.t1.exon2;Parent=MS.gene046869.t1
chr6.1	CDS	58616228	58616486	58616228	ID=cds.MS.gene046869.t1;Parent=MS.gene046869.t1
chr6.1	exon	58615960	58616136	58615960	ID=MS.gene046869.t1.exon3;Parent=MS.gene046869.t1
chr6.1	CDS	58615960	58616136	58615960	ID=cds.MS.gene046869.t1;Parent=MS.gene046869.t1
chr6.1	exon	58615010	58615792	58615010	ID=MS.gene046869.t1.exon4;Parent=MS.gene046869.t1
chr6.1	CDS	58615010	58615792	58615010	ID=cds.MS.gene046869.t1;Parent=MS.gene046869.t1
chr6.1	exon	58614969	58614980	58614969	ID=MS.gene046869.t1.exon5;Parent=MS.gene046869.t1
chr6.1	CDS	58614969	58614980	58614969	ID=cds.MS.gene046869.t1;Parent=MS.gene046869.t1

Gene Sequence

>MS.gene046869

ATGGAAAACAACAACAATGTCTTTACTGATTTTGGTACACCGGAACATGATTACGGTTTTACGGATGTGGATTTGAGTGACGAAACATACCCGATCATTGTTGGGAGTGGTGGTAAATCTACTGAGAATGTTGAACATAATGTAGATGATGATGATGATGATGATGTGAGTCATGGTAATTATACGAAGAATACTCAAGGGAATACAGGTGATGAGCGATATGATGAAACTGGAGACAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGAATGCGATGAAAGTCAAGGTGATGAAGGTGAACGTGATGAAGGTGAAGGTGATAAAAGTGAAGGTGATGAACGTGAAGGTGATGAAGGTGAACGTGATGGAGGTGGAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGCTAGTGAAGGTGATGAAAGTAAAGGTCATGCTAGTGAAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGGTGATAACAATTTAGCTGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAAGGAAAATGGAATTTGCGAGTGTTGATGAAGCTTACGATTTTTATTATAAGTACGGTAAGTGTAATGGTTTTGCTGTTAGGAAGAGTGATATTAGGCGCAATGTTAACGGTGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTTAGATAGGCAAAGAGATCACCGACGTATCACTCGTACAAAGTGTCCAGCTAGGCTCCGTGTTCACTACAGACCTAAAAAGGGTAGATATGCTGTGTCTATTTTTGAAGAGGGTCACAACCATGAACCAACTCCAACCAATGTTGTGCATTTACACCATGTTTATCGGAAAATATCCGAGGTAGATAAAGCACAGATTGATGGTCTTAAGTCACACGGAATAAGAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCACGTGTTGGGTTCACTAAGAAAGATCTGTACAATTACTAATGCGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCCCTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGACGACGGACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGCAGATCAGATTATTTCTGCTTTGGCTATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACCACTATCCGTTGGTGATTTTGTCTGGCTGCAACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGATGATGGATGAAACAATAGAAACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGGGAAAAAAATTTCCAAAAGCAGTTGTAACAGATGGTGATGGTTCTATGAGGGAGGCGATAAAGGCGGTTATACCAAGTACGCGTCATCGTCTATGTGCTTGGCATCTGAACAAGAATGCTATGGACAATGTCAAGAATTCAGCTTTTTTGGAAGGTTTTAAAAAAGCAATTTACTCTAATTTTACGGAGGATGAATTTGAAGAGTTTTGGGGGGACTTGGTGAGGGAAAATGGCCTTGAGAACAATCCATGGGTTACCAAAACATATGAGAACAAAGAATTGTGGGCAACTGCATACCTGCGTGACGATTTCTTTGGTGGTATAAGAACTACGTCTCAATGTGAGTCTGTTAATAAAATCATAAAGAGTTATGTTAGGAAGAAAGGAAGCATCTTTGAATTTCTACACAATTTTGACGAGGAAATGAGAGGCTACAGAAATAATGAACTTGTAGCTGATTTTAAATCCAGGTTTTCATCCCCTATGCTGACAACTCATCTGCGATGTCTTGAACGCGAGGCTGCTGAAATCTATACGGTAGAGATCTTTCAAGAAGTGAAAGAAGAGATTATGAAAGGTGTTGCACTGAGTGTGAAGGAAAAAGAAGTGAATGGTGACTTGAGAAAAATGAAGTTGACAAAATATCTTGAGGAGGGTGTTTATGAAATTCTATACGATGAGTCGATCTCAACAATTCAGTGTTCGTGCAGGAAATTTGAATCTCGAGGGGTTCCATGCTCCCATATTTTTTTTTGTGTTGAAGGAATAACGTGCTGAACACATTCCAGAATGTTTGATTTTGTTGCGTTGGACGAAAAAGGCGAAGATTGGTTTCTTGAATGTGGACTATTGTGGGGAAGTAGATTCTAAGTTGATGGAGATTGCTCGATATGGTGCATTATGTAATGTGTTTACAAATTTTTGCAGGGAAGTGTCCAAAAAGGGTAGCTTGTATGCTGATGTGCTGGATGACATACAAAAGCTTCGGGAAAAGTACGTGAGCCCTGAAGTTCCAATTGTTACTGGAAACTGAACAATGGACGACATGCGTGATCCATTGCCAGTGAAGTGCAAAGGTGCTCCAAAGAAGAATAAAAAGGCACTGAGCATGATGCCATAAAATGTTCCGTAGACACTGCACGTCTTTTTGTTCCCATGTCTCAGCCCGATAGCCAAAGAGACGTGGGAGAAGGATCAAAGGGAGGAAAATCAAAGAGGAAGACATGTTCCGCAAGCACTGAGCATCTTTCTGTGCCCATGTCTCAGCCTGATAGCCAGAAAGACGTGGGAGAAGGATCACAGAGAGTGAAATCAAAGAAAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGTGCCAATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGAAGGATCAAAGGGAGGCAAATCAAAGAGGAAGACATGTTCCGCAAGCACTGAGCATCTTTCTGTGCCAATGTCTCAGCATGTTAGCCAGAAAGACGTGGGAGAAGGATCAAAGAGAGTGAAATCAAAGAAAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGCGCCCATGTCTCAGTATTCTAGCCAGAAAGACGTGAGAGAAGGATCAAAGGGAGGACACCCAAAGAAAAAGACCTGTGCTGCAAGCAGTCAACATATTTATGCGCCTATGTCTCAGCATGCTAGCCAAAAAGACGTGGGAGGAGGATCAAAGGGAGGACACCCAAAGAAAAAGACCTGTGCTGCAAGCAGTCAACATATTTCTGCGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAGGAGGATCAAAGGGAGGACACCCAAAGAAAAAGACATGTTCTGCGCCTATGTCTCAGAGTGCTAGCCAAAAAGACGTGGCAGGAGGATTAAAGGGAGGTAGTCAAAGCGAGGTTATCAAGGATTCACAAAGATCCGTGAATATGAACGTAAGTACCAACAATGTGTTTAAATATAGGAATGTAAATGA

Protein sequence

>MS.gene046869.t1

MENNNNVFTDFGTPEHDYGFTDVDLSDETYPIIVGSGGKSTENVEHNVDDDDDDDVSHGNYTKNTQGNTGDERYDETGDNESDDGGCSGDYSAGDKGEDDGSECDESQGDEGERDEGEGDKSEGDEREGDEGERDGGGGDESEGDESEGDESEGHASEGDESKGHASEGDESEGDESEGHGSEGDNNLAEDDDVVVGEEMVRINSLTAEGIRKMEFASVDEAYDFYYKYGKCNGFAVRKSDIRRNVNGEIVMRQYVCNKQGFREKKHLSRLDRQRDHRRITRTKCPARLRVHYRPKKGRYAVSIFEEGHNHEPTPTNVVHLHHVYRKISEVDKAQIDGLKSHGIRTCHIMGYMVAQKGGYPRVGFTKKDLFSSPMLTTHLRCLEREAAEIYTVEIFQEVKEEIMKGVALSVKEKEVNGDLRKMKLTKYLEEGVYEILYDESISTIQCSCRKFESRGAKIGFLNVDYCGEVDSKLMEIARYGALCNVFTNFCREVSKKGSLYADVLDDIQKLREKYPDSQRDVGEGSKGGKSKRKTCSASTEHLSVPMSQPDSQKDVGEGSQRVKSKKKNCSASNEHLSVPMSQHASQKDVGEGSKGGKSKRKTCSASTEHLSVPMSQHVSQKDVGEGSKRVKSKKKNCSASNEHLSAPMSQYSSQKDVREGSKGGHPKKKTCAASSQHIYAPMSQHASQKDVGGGSKGGHPKKKTCAASSQHISAPMSQHASQKDVGGGSKGGHPKKKTCSAPMSQSASQKDVAGGLKGGSQSEVIKDSQRSVNMNECK