AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046910.t1 MTR_5g005600 93.931 725 40 2 1 725 1 721 0.0 1370
MS.gene046910.t1 MTR_2g088470 52.489 703 308 11 26 720 48 732 0.0 695
MS.gene046910.t1 MTR_4g047800 51.778 703 310 11 30 720 44 729 0.0 682
MS.gene046910.t1 MTR_8g432540 43.127 742 374 14 14 720 78 806 0.0 582
MS.gene046910.t1 MTR_7g076080 43.018 709 378 12 30 720 74 774 0.0 568
MS.gene046910.t1 MTR_1g101280 39.351 709 386 13 44 720 54 750 2.25e-175 520
MS.gene046910.t1 MTR_2g101720 38.799 683 370 13 50 720 143 789 1.37e-157 476
MS.gene046910.t1 MTR_0198s0030 37.868 713 381 14 50 720 59 751 3.92e-155 468
MS.gene046910.t1 MTR_6g477820 36.262 717 393 16 46 720 29 723 8.40e-148 448
MS.gene046910.t1 MTR_5g029320 35.256 763 432 20 1 720 35 778 1.93e-143 439
MS.gene046910.t1 MTR_7g427710 35.596 722 349 21 31 720 1 638 9.47e-124 383
MS.gene046910.t1 MTR_2g030570 33.429 700 413 19 47 721 25 696 6.70e-111 352
MS.gene046910.t1 MTR_2g030600 32.849 688 428 17 46 721 24 689 1.19e-104 335
MS.gene046910.t1 MTR_2g030660 30.115 694 429 15 35 721 4 648 7.13e-86 284
MS.gene046910.t1 MTR_2g083350 32.892 529 296 11 234 720 20 531 2.48e-80 267
MS.gene046910.t1 MTR_2g083330 34.014 441 266 6 287 720 103 525 2.28e-77 258
MS.gene046910.t1 MTR_7g427690 35.322 419 224 13 214 615 38 426 1.45e-71 241
MS.gene046910.t1 MTR_7g427700 32.024 331 159 10 31 347 1 279 1.57e-37 146
MS.gene046910.t1 MTR_7g427700 38.750 160 76 4 574 720 281 431 1.08e-19 92.8
MS.gene046910.t1 MTR_0653s0020 36.548 197 101 5 416 608 1 177 2.31e-34 130
MS.gene046910.t1 MTR_2g030690 30.420 286 188 7 439 721 1 278 7.90e-27 111
MS.gene046910.t1 MTR_5g046040 39.683 126 74 2 44 167 31 156 1.92e-22 100
MS.gene046910.t1 MTR_1g105420 36.842 190 107 7 101 286 1 181 6.44e-21 92.4
MS.gene046910.t1 MTR_1g105420 73.171 41 10 1 348 387 171 211 4.39e-13 69.3
MS.gene046910.t1 MTR_7g027265 36.667 120 75 1 46 164 17 136 8.47e-21 89.7
MS.gene046910.t1 MTR_6g027290 32.331 133 87 3 37 167 17 148 2.08e-15 75.1
MS.gene046910.t1 MTR_2g451350 35.385 130 83 1 243 371 1 130 6.86e-15 72.4
MS.gene046910.t1 MTR_0653s0010 41.322 121 51 3 613 720 1 114 7.67e-15 71.6
MS.gene046910.t1 MTR_7g027605 41.053 95 50 2 319 413 3 91 1.13e-14 70.5
MS.gene046910.t1 MTR_1g105425 44.595 74 41 0 19 92 79 152 1.46e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046910.t1 AT4G21750 54.369 721 281 13 39 724 54 761 0.0 751
MS.gene046910.t1 AT4G21750 54.369 721 281 13 39 724 54 761 0.0 751
MS.gene046910.t1 AT4G21750 54.369 721 281 13 39 724 54 761 0.0 751
MS.gene046910.t1 AT4G21750 54.369 721 281 13 39 724 54 761 0.0 751
MS.gene046910.t1 AT4G04890 55.252 695 285 10 39 720 54 735 0.0 751
MS.gene046910.t1 AT4G04890 55.252 695 285 10 39 720 54 735 0.0 751
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 314 10 30 720 48 716 0.0 672
MS.gene046910.t1 AT1G05230 50.072 697 312 11 30 720 48 714 0.0 666
MS.gene046910.t1 AT4G00730 42.185 723 368 15 21 720 103 798 0.0 542
MS.gene046910.t1 AT1G05230 48.448 580 268 9 30 603 48 602 0.0 537
MS.gene046910.t1 AT3G61150 40.187 749 367 17 22 720 86 803 3.47e-179 532
MS.gene046910.t1 AT2G32370 40.988 688 356 16 44 717 66 717 2.42e-161 483
MS.gene046910.t1 AT5G52170 38.122 703 362 12 30 720 37 678 1.38e-156 469
MS.gene046910.t1 AT5G52170 38.122 703 362 12 30 720 37 678 1.38e-156 469
MS.gene046910.t1 AT5G52170 37.926 704 367 12 30 720 37 683 4.86e-155 466
MS.gene046910.t1 AT1G73360 38.008 713 373 17 46 720 32 713 1.25e-146 445
MS.gene046910.t1 AT1G17920 38.540 685 379 11 50 720 25 681 1.12e-145 442
MS.gene046910.t1 AT1G17920 38.540 685 379 11 50 720 25 681 1.12e-145 442
MS.gene046910.t1 AT1G79840 37.464 694 370 17 42 720 40 684 1.67e-144 439
MS.gene046910.t1 AT1G79840 37.464 694 370 17 42 720 40 684 1.67e-144 439
MS.gene046910.t1 AT1G79840 37.464 694 370 17 42 720 98 742 5.41e-144 439
MS.gene046910.t1 AT1G79840 37.464 694 370 17 42 720 127 771 1.42e-143 439
MS.gene046910.t1 AT5G46880 34.631 719 420 20 37 720 103 806 8.39e-125 392
MS.gene046910.t1 AT5G46880 34.631 719 420 20 37 720 103 806 8.39e-125 392
MS.gene046910.t1 AT5G46880 34.631 719 420 20 37 720 103 806 8.39e-125 392
MS.gene046910.t1 AT1G79840 37.786 569 298 15 42 600 98 620 8.66e-119 370
MS.gene046910.t1 AT3G03260 33.842 721 404 23 30 717 11 691 4.82e-114 360
MS.gene046910.t1 AT4G17710 34.245 695 374 19 39 721 81 704 2.32e-111 353
MS.gene046910.t1 AT4G25530 32.575 703 427 16 25 720 20 682 1.99e-109 347
MS.gene046910.t1 AT4G00730 39.195 472 247 10 21 474 103 552 1.80e-100 320
MS.gene046910.t1 AT5G17320 31.944 720 431 23 38 720 18 715 4.20e-95 310
MS.gene046910.t1 AT1G34650 31.171 709 425 19 51 720 21 705 6.21e-89 294
MS.gene046910.t1 AT1G79840 38.600 443 219 13 42 475 98 496 4.36e-87 284
MS.gene046910.t1 AT3G03260 32.918 562 324 19 30 572 11 538 3.28e-81 269
MS.gene046910.t1 AT5G07260 26.212 557 329 22 112 661 10 491 1.74e-29 124
MS.gene046910.t1 AT5G07260 26.126 555 327 21 112 661 10 486 5.83e-29 122

Find 185 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCAGCTTGAAAGGTTTA+TGG 0.151518 5.4:+1273404 MS.gene046910:intron
ATTTCACGCTCTGCTGATTT+TGG 0.175951 5.4:+1273495 MS.gene046910:CDS
GTTAATTCTGGACTTGCTTT+TGG 0.195569 5.4:+1274684 MS.gene046910:CDS
AACTGCATCCAGATGGAATA+TGG 0.242195 5.4:+1274343 MS.gene046910:CDS
TCTCTTCTCTGAGCATCATT+AGG 0.259035 5.4:-1272368 None:intergenic
ATTTCAAATGGTCGTGATTC+TGG 0.286392 5.4:+1275294 MS.gene046910:CDS
TAGCTCCTCAGTACAGATTA+AGG 0.286789 5.4:+1273578 MS.gene046910:CDS
TATAAACCTCTAGTTAATTC+TGG 0.304749 5.4:+1274672 MS.gene046910:CDS
ACAACCAACGTTCCAGAAAA+AGG 0.314262 5.4:+1272168 MS.gene046910:CDS
ACCCAACGCAAATCAAGTTT+TGG 0.325446 5.4:+1272414 MS.gene046910:CDS
AACACCCTCCTTGGAGGAAC+TGG 0.338188 5.4:-1275094 None:intergenic
GAGAATTGCACTGATGTAAC+TGG 0.338466 5.4:+1275476 MS.gene046910:CDS
AAGACCTTAGTGAGACCATT+TGG 0.340133 5.4:-1274480 None:intergenic
CGTCTTACTCTGCTTCCTTC+CGG 0.342730 5.4:+1275569 MS.gene046910:CDS
ACAACCTCCGGTCCGTTTCC+AGG 0.348649 5.4:-1274983 None:intergenic
GTTTACAGTATCTCACAAAA+TGG 0.349194 5.4:-1274323 None:intergenic
CGCCAGCTTGAAAGGTTTAT+GGG 0.349672 5.4:+1273405 MS.gene046910:intron
CTCTTCTCTGAGCATCATTA+GGG 0.354899 5.4:-1272367 None:intergenic
CCAGATCCGACATTCATAAT+TGG 0.363963 5.4:-1275632 None:intergenic
GAGAATCTCAGTGACATAAT+TGG 0.367087 5.4:-1273700 None:intergenic
GACTTGAGTCGCCGCCATTC+AGG 0.368603 5.4:-1275547 None:intergenic
AAGTAGCCTCCATGTTCATT+TGG 0.369354 5.4:-1272127 None:intergenic
TTATATAGGTTCAAACTGAT+AGG 0.374562 5.4:+1273046 MS.gene046910:intron
TCAGCAACAAATTGATGAAA+TGG 0.376687 5.4:+1272208 MS.gene046910:CDS
TGGAACGTTGGTTGTGTTGT+TGG 0.379260 5.4:-1272160 None:intergenic
ACTTACAGTGATACGAAATA+AGG 0.385266 5.4:-1275328 None:intergenic
ACCAAACTGGCTAGGACATA+TGG 0.389902 5.4:+1273657 MS.gene046910:CDS
ATTGTTGGATGATGTTATAT+TGG 0.393371 5.4:-1273460 None:intergenic
ATTGTAGAGCTTGCTGTTGT+TGG 0.393723 5.4:+1273621 MS.gene046910:CDS
GAGATGAAGTTAATAGATAC+AGG 0.396482 5.4:+1273109 MS.gene046910:CDS
TCCACATGCAAGGCTAGCTC+TGG 0.401494 5.4:+1275700 MS.gene046910:CDS
CGGCGGTATAGTTCATGAAT+TGG 0.401952 5.4:+1275266 MS.gene046910:CDS
CCAATTATGAATGTCGGATC+TGG 0.406349 5.4:+1275632 MS.gene046910:CDS
ACACTTGAAGTCCTTTCAAC+TGG 0.406882 5.4:+1274115 MS.gene046910:CDS
GCATTTGTTATGCACCCATC+TGG 0.409868 5.4:-1275605 None:intergenic
AAGTATTTCCCAAGGGCTAA+TGG 0.411663 5.4:+1273741 MS.gene046910:CDS
AGAGAAGAGAGCTGAGCCTT+CGG 0.419978 5.4:+1272381 MS.gene046910:CDS
AGCTTTAATCCCAATGTGTT+GGG 0.429957 5.4:-1273765 None:intergenic
CTCTGAGCATCATTAGGGTT+AGG 0.434546 5.4:-1272362 None:intergenic
AGACCTTAGTGAGACCATTT+GGG 0.436761 5.4:-1274479 None:intergenic
GACTGGAGAATGCTCTCTTA+AGG 0.451510 5.4:+1273211 MS.gene046910:CDS
TCCATATGTCCTAGCCAGTT+TGG 0.452823 5.4:-1273658 None:intergenic
TTCAGGATTTCATGCATTGT+AGG 0.456298 5.4:-1275530 None:intergenic
GCCACTACCCATATTCCATC+TGG 0.457430 5.4:-1274351 None:intergenic
AGAAAATCAAACACCCTCCT+TGG 0.457924 5.4:-1275103 None:intergenic
ACCAAAACTTGATTTGCGTT+GGG 0.459278 5.4:-1272415 None:intergenic
TAATGAAATTAGATGCCATT+AGG 0.460205 5.4:-1275788 None:intergenic
TGACATTTCCCCAGCGGTAG+TGG 0.460740 5.4:-1273169 None:intergenic
AAAACTGCAGTGATGCCTAA+TGG 0.465524 5.4:+1275773 MS.gene046910:CDS
AGAGAGCTGAGCCTTCGGAC+TGG 0.466205 5.4:+1272386 MS.gene046910:CDS
AGAACATGTATCATCAGAAT+AGG 0.466666 5.4:+1272078 MS.gene046910:CDS
GAGAGCTGAGCCTTCGGACT+GGG 0.469640 5.4:+1272387 MS.gene046910:CDS
GCTAGCTTTAGTACAAGTAT+TGG 0.471031 5.4:+1274929 MS.gene046910:CDS
TGTTGGGACCATTAGCCCTT+GGG 0.476328 5.4:-1273749 None:intergenic
ATGAGGATATCTACAAGATC+AGG 0.482347 5.4:-1273828 None:intergenic
GAATTGGCTCACATTTCAAA+TGG 0.482575 5.4:+1275282 MS.gene046910:CDS
TTGCTGAGTGTGGCGGCGAT+AGG 0.483290 5.4:-1272192 None:intergenic
GCTAATGGTCCCAACACATT+GGG 0.483917 5.4:+1273756 MS.gene046910:CDS
ACATTGGGATTAAAGCTTGA+GGG 0.484683 5.4:+1273771 MS.gene046910:CDS
AGCTCCTCAGTACAGATTAA+GGG 0.487431 5.4:+1273579 MS.gene046910:CDS
AACCAAAACTTGATTTGCGT+TGG 0.487544 5.4:-1272416 None:intergenic
AGAGCTTGCTGTTGTTGGAA+TGG 0.487738 5.4:+1273626 MS.gene046910:CDS
GTTCTTCTACAACACATGCT+TGG 0.487768 5.4:+1274951 MS.gene046910:CDS
AAACGGCCACCAACGTTCCA+CGG 0.489293 5.4:+1274760 MS.gene046910:CDS
AATGGCTGAACTGACCAAAC+TGG 0.494651 5.4:+1273644 MS.gene046910:CDS
TGACGATCAGCAGCTAAGAC+TGG 0.495757 5.4:+1273194 MS.gene046910:CDS
AAGCTTTAATCCCAATGTGT+TGG 0.498683 5.4:-1273766 None:intergenic
CGAGAGTCTGCAGGATCTGT+TGG 0.502957 5.4:-1273435 None:intergenic
TTTGGCTTCCAGTTCCTCCA+AGG 0.503857 5.4:+1275086 MS.gene046910:CDS
GTCATGACCATTACAACCTC+CGG 0.508691 5.4:-1274995 None:intergenic
AAATGTAGAAGTTGATGATC+AGG 0.509315 5.4:+1274635 MS.gene046910:CDS
AATAACATGAGTGCTATTGT+TGG 0.512062 5.4:-1273475 None:intergenic
TATATAGGTTCAAACTGATA+GGG 0.512992 5.4:+1273047 MS.gene046910:intron
GTAGGAGAGGCTTTCACTGT+TGG 0.513732 5.4:+1273555 MS.gene046910:CDS
GCTTCCAGTTCCTCCAAGGA+GGG 0.515083 5.4:+1275090 MS.gene046910:CDS
ACTGCATCCAGATGGAATAT+GGG 0.521116 5.4:+1274344 MS.gene046910:CDS
GAAGTCCTTTCAACTGGAGT+GGG 0.523037 5.4:+1274121 MS.gene046910:CDS
ATTGAATCTTGCGGAAAGGT+TGG 0.528383 5.4:+1274904 MS.gene046910:CDS
AACGGCCACCAACGTTCCAC+GGG 0.530317 5.4:+1274761 MS.gene046910:CDS
TATGTCACTGAGATTCTCAA+TGG 0.532052 5.4:+1273705 MS.gene046910:CDS
TGGACAAAGGTACCTGGAAA+CGG 0.533786 5.4:+1274971 MS.gene046910:CDS
AAATCAAACACCCTCCTTGG+AGG 0.534430 5.4:-1275100 None:intergenic
TGCATTGTAGGTATTTGCAC+AGG 0.535629 5.4:-1275518 None:intergenic
ATTAGTACTTACCACTTGCA+AGG 0.535950 5.4:-1274161 None:intergenic
TTGATTGAGACACTCCCAAA+TGG 0.537043 5.4:+1274465 MS.gene046910:CDS
GAATGCTCTCTTAAGGAAAG+AGG 0.538971 5.4:+1273218 MS.gene046910:CDS
CATCAATTTGTTGCTGAGTG+TGG 0.539652 5.4:-1272202 None:intergenic
CGAGTAGGAACATGTGGGGA+GGG 0.539762 5.4:-1274294 None:intergenic
GTGTTGGGACCATTAGCCCT+TGG 0.540053 5.4:-1273750 None:intergenic
TGTGGAAGTTCCACTACCGC+TGG 0.541115 5.4:+1273159 MS.gene046910:CDS
GGCTAATGGTCCCAACACAT+TGG 0.544303 5.4:+1273755 MS.gene046910:CDS
CATGCTTGGACAAAGGTACC+TGG 0.544698 5.4:+1274965 MS.gene046910:CDS
TGAAGTCCTTTCAACTGGAG+TGG 0.545864 5.4:+1274120 MS.gene046910:CDS
AAACGGACCGGAGGTTGTAA+TGG 0.547300 5.4:+1274988 MS.gene046910:CDS
ATTATGAATGTCGGATCTGG+AGG 0.550174 5.4:+1275635 MS.gene046910:CDS
GGCTTCCAGTTCCTCCAAGG+AGG 0.551888 5.4:+1275089 MS.gene046910:CDS
TACCTCCCACTCCAGTTGAA+AGG 0.552733 5.4:-1274126 None:intergenic
GATGGGTGCATAACAAATGC+AGG 0.554349 5.4:+1275608 MS.gene046910:CDS
TACTGTAAACTGCATCCAGA+TGG 0.557363 5.4:+1274336 MS.gene046910:CDS
TACAACACATGCTTGGACAA+AGG 0.558020 5.4:+1274958 MS.gene046910:CDS
CACATTGGGATTAAAGCTTG+AGG 0.558168 5.4:+1273770 MS.gene046910:CDS
GCACTTAGCACTACACTGAC+GGG 0.561320 5.4:-1275052 None:intergenic
GAACAGGCGCACTTCGCTGA+AGG 0.561506 5.4:+1272442 MS.gene046910:CDS
AGCACTTAGCACTACACTGA+CGG 0.563954 5.4:-1275053 None:intergenic
CAGTGGGATATTCTCTCCGC+CGG 0.564704 5.4:+1275246 MS.gene046910:intron
CTGAACTGACCAAACTGGCT+AGG 0.569467 5.4:+1273649 MS.gene046910:CDS
GAAAAGTATATTGAATCTTG+CGG 0.569980 5.4:+1274895 MS.gene046910:CDS
GTGGAAGTTCCACTACCGCT+GGG 0.571737 5.4:+1273160 MS.gene046910:CDS
AATTGGTGGGAAGCCAAAGA+GGG 0.573774 5.4:-1273683 None:intergenic
GTTACCACATGCAACGTATG+TGG 0.576120 5.4:+1273141 MS.gene046910:CDS
AATCTCAGTGACATAATTGG+TGG 0.578666 5.4:-1273697 None:intergenic
AGGGTCTTAATGAGAAGCAA+AGG 0.578872 5.4:+1273598 MS.gene046910:CDS
GGAGTTGCTGGTGGTAACAA+TGG 0.581415 5.4:+1273516 MS.gene046910:CDS
TGATCTTGTAGATATCCTCA+TGG 0.582197 5.4:+1273830 MS.gene046910:CDS
GCAGGACCAATTATGAATGT+CGG 0.584913 5.4:+1275626 MS.gene046910:CDS
ACAACCAGAGGGTCTTCTGT+TGG 0.585992 5.4:-1274442 None:intergenic
ATGTTCCCGTGGAACGTTGG+TGG 0.586357 5.4:-1274766 None:intergenic
AGAACCAACAGAAGACCCTC+TGG 0.588399 5.4:+1274438 MS.gene046910:CDS
AACGTTCCACGGGAACATCA+TGG 0.588608 5.4:+1274771 MS.gene046910:CDS
TGATCAAGAACACTGTGGAA+AGG 0.589920 5.4:+1275747 MS.gene046910:CDS
GAGTAGGAACATGTGGGGAG+GGG 0.590439 5.4:-1274293 None:intergenic
TTGATTCTATTCCACATGCA+AGG 0.590966 5.4:+1275690 MS.gene046910:CDS
ATATTGGCACGAGAGTCTGC+AGG 0.595802 5.4:-1273444 None:intergenic
GTATATTGAATCTTGCGGAA+AGG 0.597531 5.4:+1274900 MS.gene046910:CDS
GTCCTTTCAACTGGAGTGGG+AGG 0.597763 5.4:+1274124 MS.gene046910:CDS
CCACATGCAAGGCTAGCTCT+GGG 0.598313 5.4:+1275701 MS.gene046910:CDS
AATACATGAAGTATTTCCCA+AGG 0.599100 5.4:+1273733 MS.gene046910:CDS
ATCTCAGTGACATAATTGGT+GGG 0.600678 5.4:-1273696 None:intergenic
AAAGGTACCTGGAAACGGAC+CGG 0.603908 5.4:+1274976 MS.gene046910:CDS
CAATTTGTTGCTGAGTGTGG+CGG 0.605203 5.4:-1272199 None:intergenic
CACTGAGATTCTCAATGGAG+AGG 0.605470 5.4:+1273710 MS.gene046910:CDS
TGTTGCATTTAACAGATGCA+AGG 0.605749 5.4:-1274382 None:intergenic
ACAATGCATGAAATCCTGAA+TGG 0.606726 5.4:+1275533 MS.gene046910:CDS
CAATTCATGAACTATACCGC+CGG 0.609707 5.4:-1275265 None:intergenic
ACTCCCAAATGGTCTCACTA+AGG 0.610306 5.4:+1274476 MS.gene046910:CDS
TAATTGGTGGGAAGCCAAAG+AGG 0.613117 5.4:-1273684 None:intergenic
GGAGCACACCACCGCATGGT+AGG 0.614498 5.4:+1273537 MS.gene046910:CDS
ACGAGTAGGAACATGTGGGG+AGG 0.617756 5.4:-1274295 None:intergenic
ACAGTGAGATTGACTCCGGA+GGG 0.618021 5.4:+1274869 MS.gene046910:intron
TGTAGATATCCTCATGGATG+TGG 0.622507 5.4:+1273836 MS.gene046910:CDS
ATGTACAGTGAGATTGACTC+CGG 0.623201 5.4:+1274865 MS.gene046910:intron
TTGGGTCTAACCCAGTCCGA+AGG 0.623750 5.4:-1272397 None:intergenic
GCAAGTCCAGAATTAACTAG+AGG 0.625489 5.4:-1274678 None:intergenic
AGATGAAGTTAATAGATACA+GGG 0.626082 5.4:+1273110 MS.gene046910:CDS
TCCAGATGGAATATGGGTAG+TGG 0.628113 5.4:+1274350 MS.gene046910:CDS
AGAAGCAAACCAAATGAACA+TGG 0.628253 5.4:+1272118 MS.gene046910:CDS
ACACCACCGCATGGTAGGAG+AGG 0.632377 5.4:+1273542 MS.gene046910:CDS
CCCAGAGCTAGCCTTGCATG+TGG 0.637254 5.4:-1275701 None:intergenic
TGGGATATTCTCTCCGCCGG+CGG 0.644828 5.4:+1275249 MS.gene046910:CDS
ATTGGTGGGAAGCCAAAGAG+GGG 0.648389 5.4:-1273682 None:intergenic
TTATGAATGTCGGATCTGGA+GGG 0.649910 5.4:+1275636 MS.gene046910:CDS
AAGCCTCTCCTACCATGCGG+TGG 0.649944 5.4:-1273545 None:intergenic
CAATGGAGCACACCACCGCA+TGG 0.649965 5.4:+1273533 MS.gene046910:CDS
AGAATTGCACTGATGTAACT+GGG 0.652163 5.4:+1275477 MS.gene046910:CDS
ATGATGTTCCCGTGGAACGT+TGG 0.653734 5.4:-1274769 None:intergenic
TACAGTGAGATTGACTCCGG+AGG 0.655167 5.4:+1274868 MS.gene046910:intron
TATATACCATGATGTTCCCG+TGG 0.660275 5.4:-1274777 None:intergenic
CTACGATGGAGCCTTGCAAG+TGG 0.661414 5.4:+1274150 MS.gene046910:CDS
TGTCTCAATCAAACAACCAG+AGG 0.663405 5.4:-1274454 None:intergenic
TTTGACGAGTAGGAACATGT+GGG 0.667790 5.4:-1274299 None:intergenic
GTCTCAATCAAACAACCAGA+GGG 0.671321 5.4:-1274453 None:intergenic
ATGAAGTTAATAGATACAGG+GGG 0.672309 5.4:+1273112 MS.gene046910:CDS
AAATTCAGAGCAGAGTGATG+TGG 0.672413 5.4:+1275442 MS.gene046910:CDS
GGAGTGGGAGGTAACTACGA+TGG 0.675779 5.4:+1274136 MS.gene046910:CDS
GATGAAGTTAATAGATACAG+GGG 0.679151 5.4:+1273111 MS.gene046910:CDS
TGAGGGTTCGAAAGAATCCG+TGG 0.680929 5.4:+1273788 MS.gene046910:CDS
ACTTCCACATACGTTGCATG+TGG 0.681040 5.4:-1273145 None:intergenic
AAGACCCTTAATCTGTACTG+AGG 0.682265 5.4:-1273583 None:intergenic
TGGAAGTTCCACTACCGCTG+GGG 0.684408 5.4:+1273161 MS.gene046910:CDS
ATGCATGAAATCCTGAATGG+CGG 0.684425 5.4:+1275536 MS.gene046910:CDS
TGTAGAAGTTGATGATCAGG+TGG 0.686691 5.4:+1274638 MS.gene046910:CDS
TTGACGAGTAGGAACATGTG+GGG 0.689635 5.4:-1274298 None:intergenic
TTGGTGGGAAGCCAAAGAGG+GGG 0.695051 5.4:-1273681 None:intergenic
ATACATGAAGTATTTCCCAA+GGG 0.695847 5.4:+1273734 MS.gene046910:CDS
AGCATTAATCATGACCACCA+CGG 0.701180 5.4:-1273805 None:intergenic
GGTACCTGGAAACGGACCGG+AGG 0.704720 5.4:+1274979 MS.gene046910:CDS
AGCAAACCAAATGAACATGG+AGG 0.714730 5.4:+1272121 MS.gene046910:CDS
CACTTTGATCAAGAACACTG+TGG 0.719780 5.4:+1275742 MS.gene046910:CDS
TTCATGAACTATACCGCCGG+CGG 0.721861 5.4:-1275262 None:intergenic
GTCATGTGACATTTCCCCAG+CGG 0.729104 5.4:-1273175 None:intergenic
CTTGATCAAAGTGTTAACAG+TGG 0.736197 5.4:-1275732 None:intergenic
AATGACTCACCACATCCATG+AGG 0.740230 5.4:-1273845 None:intergenic
GGGTTCGAAAGAATCCGTGG+TGG 0.741743 5.4:+1273791 MS.gene046910:CDS
TGAAGTTAATAGATACAGGG+GGG 0.744765 5.4:+1273113 MS.gene046910:CDS
TGAAAGCCTCTCCTACCATG+CGG 0.748941 5.4:-1273548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTAAAAAAAAA+AGG - chr5.4:1274804-1274823 None:intergenic 0.0%
!! AAATTTAATAATATAAATGG+AGG - chr5.4:1274042-1274061 None:intergenic 10.0%
!! AAGTTATGTAAAATTAAAAT+TGG + chr5.4:1275347-1275366 MS.gene046910:intron 10.0%
!! AATTTAATAATATAAATGGA+GGG - chr5.4:1274041-1274060 None:intergenic 10.0%
!! TCAGATAAAATATATAAAAA+TGG - chr5.4:1272245-1272264 None:intergenic 10.0%
!! TTAATAATAGTTTATAATGT+TGG + chr5.4:1274532-1274551 MS.gene046910:intron 10.0%
!!! AATAATATTCTAAAAATACT+TGG - chr5.4:1273962-1273981 None:intergenic 10.0%
!!! TTTATTTTAAAAAAGAACAT+TGG + chr5.4:1273984-1274003 MS.gene046910:intron 10.0%
!! AAACATTAATGCAAATAATA+AGG - chr5.4:1273899-1273918 None:intergenic 15.0%
!! ATATTTAATTGAATTTACAG+TGG + chr5.4:1275229-1275248 MS.gene046910:intron 15.0%
!! ATTATTAGTGTTTCAAATTT+GGG - chr5.4:1272840-1272859 None:intergenic 15.0%
!! TATTATTAGTGTTTCAAATT+TGG - chr5.4:1272841-1272860 None:intergenic 15.0%
!! TATTTAATTGAATTTACAGT+GGG + chr5.4:1275230-1275249 MS.gene046910:intron 15.0%
!!! ATTAATATTATTTTAGGTGA+AGG - chr5.4:1274517-1274536 None:intergenic 15.0%
!!! ATTAATTAAATGCTTCTTTT+CGG + chr5.4:1272991-1273010 MS.gene046910:intron 15.0%
!!! ATTATTTTTCTTTGTAACAT+AGG - chr5.4:1272655-1272674 None:intergenic 15.0%
!!! GTATATTAATTTTTTGAACT+TGG + chr5.4:1272308-1272327 MS.gene046910:intron 15.0%
!! AAAAAAAAATTACATGCAGT+TGG - chr5.4:1272477-1272496 None:intergenic 20.0%
!! TTATTAGTGTTTCAAATTTG+GGG - chr5.4:1272839-1272858 None:intergenic 20.0%
!!! AATGTTGGATTATTTTAATG+TGG + chr5.4:1274547-1274566 MS.gene046910:intron 20.0%
!!! TATGTAAGAGTTGATAATAA+TGG - chr5.4:1272584-1272603 None:intergenic 20.0%
! AACATAGGTGATAAATTTAG+AGG - chr5.4:1272640-1272659 None:intergenic 25.0%
! AGATGAAGTTAATAGATACA+GGG + chr5.4:1273110-1273129 MS.gene046910:CDS 25.0%
! ATGATGCAATCATAATATTG+CGG - chr5.4:1272813-1272832 None:intergenic 25.0%
! ATTGTTGGATGATGTTATAT+TGG - chr5.4:1273463-1273482 None:intergenic 25.0%
! GCATTAATGTTTCAAAAACT+TGG + chr5.4:1273907-1273926 MS.gene046910:intron 25.0%
! TATAAACCTCTAGTTAATTC+TGG + chr5.4:1274672-1274691 MS.gene046910:CDS 25.0%
! TATATAGGTTCAAACTGATA+GGG + chr5.4:1273047-1273066 MS.gene046910:intron 25.0%
! TTATATAGGTTCAAACTGAT+AGG + chr5.4:1273046-1273065 MS.gene046910:intron 25.0%
! TTATTTACATTGCACTTCAA+TGG + chr5.4:1272756-1272775 MS.gene046910:intron 25.0%
!! CTTTACTTGCTCTATATTTT+TGG + chr5.4:1272286-1272305 MS.gene046910:intron 25.0%
!! GAAAAGTATATTGAATCTTG+CGG + chr5.4:1274895-1274914 MS.gene046910:CDS 25.0%
!!! AAATTTGTTTTCAGAATCGA+TGG + chr5.4:1274056-1274075 MS.gene046910:intron 25.0%
!!! GTTGTCTTGTTTTTTTAAAC+AGG + chr5.4:1274599-1274618 MS.gene046910:intron 25.0%
!!! GTTTTTTTAAACAGGTTACA+TGG + chr5.4:1274607-1274626 MS.gene046910:intron 25.0%
!!! TGATCGTCTTGTTTTTAAAA+CGG + chr5.4:1274743-1274762 MS.gene046910:CDS 25.0%
AATTGATGAAATGGATACGT+AGG + chr5.4:1272217-1272236 MS.gene046910:intron 30.0%
ACTTACAGTGATACGAAATA+AGG - chr5.4:1275331-1275350 None:intergenic 30.0%
AGAACATGTATCATCAGAAT+AGG + chr5.4:1272078-1272097 MS.gene046910:CDS 30.0%
ATGAAGTTAATAGATACAGG+GGG + chr5.4:1273112-1273131 MS.gene046910:CDS 30.0%
GAGATGAAGTTAATAGATAC+AGG + chr5.4:1273109-1273128 MS.gene046910:CDS 30.0%
GATGAAGTTAATAGATACAG+GGG + chr5.4:1273111-1273130 MS.gene046910:CDS 30.0%
GTTTACAGTATCTCACAAAA+TGG - chr5.4:1274326-1274345 None:intergenic 30.0%
TCAGCAACAAATTGATGAAA+TGG + chr5.4:1272208-1272227 MS.gene046910:CDS 30.0%
! AATAACATGAGTGCTATTGT+TGG - chr5.4:1273478-1273497 None:intergenic 30.0%
! AATACATGAAGTATTTCCCA+AGG + chr5.4:1273733-1273752 MS.gene046910:CDS 30.0%
! AATATACTTTTCTTTCCCTC+CGG - chr5.4:1274887-1274906 None:intergenic 30.0%
! AATTAAATGCTTCTTTTCGG+CGG + chr5.4:1272994-1273013 MS.gene046910:intron 30.0%
! ATACATGAAGTATTTCCCAA+GGG + chr5.4:1273734-1273753 MS.gene046910:CDS 30.0%
! TAATAAGGCTTAGAAAGTGT+TGG - chr5.4:1273884-1273903 None:intergenic 30.0%
!! AAATGTAGAAGTTGATGATC+AGG + chr5.4:1274635-1274654 MS.gene046910:CDS 30.0%
!! TTCTTGATGTGATTTTGATG+TGG - chr5.4:1272062-1272081 None:intergenic 30.0%
AATCTCAGTGACATAATTGG+TGG - chr5.4:1273700-1273719 None:intergenic 35.0%
ACAATGCATGAAATCCTGAA+TGG + chr5.4:1275533-1275552 MS.gene046910:CDS 35.0%
ACATTGGGATTAAAGCTTGA+GGG + chr5.4:1273771-1273790 MS.gene046910:CDS 35.0%
AGAAGCAAACCAAATGAACA+TGG + chr5.4:1272118-1272137 MS.gene046910:CDS 35.0%
ATCTCAGTGACATAATTGGT+GGG - chr5.4:1273699-1273718 None:intergenic 35.0%
ATCTGGAAAAATAGCGAATC+CGG - chr5.4:1275591-1275610 None:intergenic 35.0%
ATGAGGATATCTACAAGATC+AGG - chr5.4:1273831-1273850 None:intergenic 35.0%
ATTAGTACTTACCACTTGCA+AGG - chr5.4:1274164-1274183 None:intergenic 35.0%
ATTTCAAATGGTCGTGATTC+TGG + chr5.4:1275294-1275313 MS.gene046910:CDS 35.0%
CAATCATAATATTGCGGTTG+CGG - chr5.4:1272807-1272826 None:intergenic 35.0%
GAAAATCGTAACAAACGATG+AGG - chr5.4:1273246-1273265 None:intergenic 35.0%
GAGAATCTCAGTGACATAAT+TGG - chr5.4:1273703-1273722 None:intergenic 35.0%
GATGACTAAATAGTCTGTTG+CGG + chr5.4:1272681-1272700 MS.gene046910:intron 35.0%
GCATAACATGAAACTGCATT+AGG - chr5.4:1272707-1272726 None:intergenic 35.0%
GTATATTGAATCTTGCGGAA+AGG + chr5.4:1274900-1274919 MS.gene046910:CDS 35.0%
TATGTCACTGAGATTCTCAA+TGG + chr5.4:1273705-1273724 MS.gene046910:CDS 35.0%
TGAAGTTAATAGATACAGGG+GGG + chr5.4:1273113-1273132 MS.gene046910:CDS 35.0%
TGATCTTGTAGATATCCTCA+TGG + chr5.4:1273830-1273849 MS.gene046910:CDS 35.0%
TGTTGCATTTAACAGATGCA+AGG - chr5.4:1274385-1274404 None:intergenic 35.0%
TTCAGGATTTCATGCATTGT+AGG - chr5.4:1275533-1275552 None:intergenic 35.0%
TTGATTCTATTCCACATGCA+AGG + chr5.4:1275690-1275709 MS.gene046910:CDS 35.0%
TTTACATTGCACTTCAATGG+CGG + chr5.4:1272759-1272778 MS.gene046910:intron 35.0%
! AAGCTTTAATCCCAATGTGT+TGG - chr5.4:1273769-1273788 None:intergenic 35.0%
! AGAATTGCACTGATGTAACT+GGG + chr5.4:1275477-1275496 MS.gene046910:CDS 35.0%
! AGCTTTAATCCCAATGTGTT+GGG - chr5.4:1273768-1273787 None:intergenic 35.0%
! CGATGGTCAAATATGTTTTG+CGG + chr5.4:1274073-1274092 MS.gene046910:CDS 35.0%
! CTTGATCAAAGTGTTAACAG+TGG - chr5.4:1275735-1275754 None:intergenic 35.0%
! GAATTGGCTCACATTTCAAA+TGG + chr5.4:1275282-1275301 MS.gene046910:CDS 35.0%
!! AACCAAAACTTGATTTGCGT+TGG - chr5.4:1272419-1272438 None:intergenic 35.0%
!! ACCAAAACTTGATTTGCGTT+GGG - chr5.4:1272418-1272437 None:intergenic 35.0%
!! GCTAGCTTTAGTACAAGTAT+TGG + chr5.4:1274929-1274948 MS.gene046910:CDS 35.0%
!! GTTAATTCTGGACTTGCTTT+TGG + chr5.4:1274684-1274703 MS.gene046910:CDS 35.0%
!! TAAGTGCTGCTACTTCTTTT+TGG + chr5.4:1275068-1275087 MS.gene046910:CDS 35.0%
!! TTTTAGGTGAAGGTGAAATG+TGG - chr5.4:1274507-1274526 None:intergenic 35.0%
!!! ACAAAATGGTTTTGACGAGT+AGG - chr5.4:1274312-1274331 None:intergenic 35.0%
!!! GATTCGCTATTTTTCCAGAT+GGG + chr5.4:1275591-1275610 MS.gene046910:CDS 35.0%
!!! TCAAGTTTTGGTTTCAGAAC+AGG + chr5.4:1272426-1272445 MS.gene046910:CDS 35.0%
AAAAAAACCGCCAGCTTGAA+AGG + chr5.4:1273397-1273416 MS.gene046910:intron 40.0%
AAAACTGCAGTGATGCCTAA+TGG + chr5.4:1275773-1275792 MS.gene046910:CDS 40.0%
AAAACTTGGACCAAACCATC+CGG + chr5.4:1273921-1273940 MS.gene046910:intron 40.0%
AAATTCAGAGCAGAGTGATG+TGG + chr5.4:1275442-1275461 MS.gene046910:CDS 40.0%
AACTGCATCCAGATGGAATA+TGG + chr5.4:1274343-1274362 MS.gene046910:CDS 40.0%
AAGACCCTTAATCTGTACTG+AGG - chr5.4:1273586-1273605 None:intergenic 40.0%
AAGACCTTAGTGAGACCATT+TGG - chr5.4:1274483-1274502 None:intergenic 40.0%
AAGTAGCCTCCATGTTCATT+TGG - chr5.4:1272130-1272149 None:intergenic 40.0%
AAGTATTTCCCAAGGGCTAA+TGG + chr5.4:1273741-1273760 MS.gene046910:CDS 40.0%
ACAACCAACGTTCCAGAAAA+AGG + chr5.4:1272168-1272187 MS.gene046910:CDS 40.0%
ACACTTGAAGTCCTTTCAAC+TGG + chr5.4:1274115-1274134 MS.gene046910:CDS 40.0%
ACTGCATCCAGATGGAATAT+GGG + chr5.4:1274344-1274363 MS.gene046910:CDS 40.0%
AGAAAATCAAACACCCTCCT+TGG - chr5.4:1275106-1275125 None:intergenic 40.0%
AGACCTTAGTGAGACCATTT+GGG - chr5.4:1274482-1274501 None:intergenic 40.0%
AGCAAACCAAATGAACATGG+AGG + chr5.4:1272121-1272140 MS.gene046910:CDS 40.0%
AGCATTAATCATGACCACCA+CGG - chr5.4:1273808-1273827 None:intergenic 40.0%
AGCTCCTCAGTACAGATTAA+GGG + chr5.4:1273579-1273598 MS.gene046910:CDS 40.0%
AGGGTCTTAATGAGAAGCAA+AGG + chr5.4:1273598-1273617 MS.gene046910:CDS 40.0%
ATGCATGAAATCCTGAATGG+CGG + chr5.4:1275536-1275555 MS.gene046910:CDS 40.0%
ATTATGAATGTCGGATCTGG+AGG + chr5.4:1275635-1275654 MS.gene046910:CDS 40.0%
ATTGAATCTTGCGGAAAGGT+TGG + chr5.4:1274904-1274923 MS.gene046910:CDS 40.0%
CAATTCATGAACTATACCGC+CGG - chr5.4:1275268-1275287 None:intergenic 40.0%
CACATTGGGATTAAAGCTTG+AGG + chr5.4:1273770-1273789 MS.gene046910:CDS 40.0%
CACTTTGATCAAGAACACTG+TGG + chr5.4:1275742-1275761 MS.gene046910:CDS 40.0%
CCAATTATGAATGTCGGATC+TGG + chr5.4:1275632-1275651 MS.gene046910:CDS 40.0%
CCAGATCCGACATTCATAAT+TGG - chr5.4:1275635-1275654 None:intergenic 40.0%
CTCTTCTCTGAGCATCATTA+GGG - chr5.4:1272370-1272389 None:intergenic 40.0%
GAATGCTCTCTTAAGGAAAG+AGG + chr5.4:1273218-1273237 MS.gene046910:CDS 40.0%
GCAAGTCCAGAATTAACTAG+AGG - chr5.4:1274681-1274700 None:intergenic 40.0%
GCAGGACCAATTATGAATGT+CGG + chr5.4:1275626-1275645 MS.gene046910:CDS 40.0%
GTCTCAATCAAACAACCAGA+GGG - chr5.4:1274456-1274475 None:intergenic 40.0%
GTTCTTCTACAACACATGCT+TGG + chr5.4:1274951-1274970 MS.gene046910:CDS 40.0%
TACAACACATGCTTGGACAA+AGG + chr5.4:1274958-1274977 MS.gene046910:CDS 40.0%
TACTGTAAACTGCATCCAGA+TGG + chr5.4:1274336-1274355 MS.gene046910:CDS 40.0%
TAGCTCCTCAGTACAGATTA+AGG + chr5.4:1273578-1273597 MS.gene046910:CDS 40.0%
TATATACCATGATGTTCCCG+TGG - chr5.4:1274780-1274799 None:intergenic 40.0%
TCTCTTCTCTGAGCATCATT+AGG - chr5.4:1272371-1272390 None:intergenic 40.0%
TGATCAAGAACACTGTGGAA+AGG + chr5.4:1275747-1275766 MS.gene046910:CDS 40.0%
TGCATTGTAGGTATTTGCAC+AGG - chr5.4:1275521-1275540 None:intergenic 40.0%
TGTAGATATCCTCATGGATG+TGG + chr5.4:1273836-1273855 MS.gene046910:CDS 40.0%
TGTCTCAATCAAACAACCAG+AGG - chr5.4:1274457-1274476 None:intergenic 40.0%
TTATGAATGTCGGATCTGGA+GGG + chr5.4:1275636-1275655 MS.gene046910:CDS 40.0%
TTGATTGAGACACTCCCAAA+TGG + chr5.4:1274465-1274484 MS.gene046910:CDS 40.0%
TTGGTTCAACCTGATTGAAC+CGG - chr5.4:1273943-1273962 None:intergenic 40.0%
TTTGACGAGTAGGAACATGT+GGG - chr5.4:1274302-1274321 None:intergenic 40.0%
! ACCCAACGCAAATCAAGTTT+TGG + chr5.4:1272414-1272433 MS.gene046910:CDS 40.0%
! ATGTACAGTGAGATTGACTC+CGG + chr5.4:1274865-1274884 MS.gene046910:intron 40.0%
! GAGAATTGCACTGATGTAAC+TGG + chr5.4:1275476-1275495 MS.gene046910:CDS 40.0%
! TTTTGACGAGTAGGAACATG+TGG - chr5.4:1274303-1274322 None:intergenic 40.0%
!! ATTGTAGAGCTTGCTGTTGT+TGG + chr5.4:1273621-1273640 MS.gene046910:CDS 40.0%
!! CATCAATTTGTTGCTGAGTG+TGG - chr5.4:1272205-1272224 None:intergenic 40.0%
!! GCTCTGAATTTTCACTCTAC+AGG - chr5.4:1275433-1275452 None:intergenic 40.0%
!! TGTAGAAGTTGATGATCAGG+TGG + chr5.4:1274638-1274657 MS.gene046910:CDS 40.0%
!!! ATTTCACGCTCTGCTGATTT+TGG + chr5.4:1273495-1273514 MS.gene046910:CDS 40.0%
!!! GGATTCGCTATTTTTCCAGA+TGG + chr5.4:1275590-1275609 MS.gene046910:CDS 40.0%
AAATCAAACACCCTCCTTGG+AGG - chr5.4:1275103-1275122 None:intergenic 45.0%
AATGACTCACCACATCCATG+AGG - chr5.4:1273848-1273867 None:intergenic 45.0%
AATGGCTGAACTGACCAAAC+TGG + chr5.4:1273644-1273663 MS.gene046910:CDS 45.0%
AATTGGTGGGAAGCCAAAGA+GGG - chr5.4:1273686-1273705 None:intergenic 45.0%
ACCAAACTGGCTAGGACATA+TGG + chr5.4:1273657-1273676 MS.gene046910:CDS 45.0%
ACTCCCAAATGGTCTCACTA+AGG + chr5.4:1274476-1274495 MS.gene046910:CDS 45.0%
ACTTCCACATACGTTGCATG+TGG - chr5.4:1273148-1273167 None:intergenic 45.0%
AGCACTTAGCACTACACTGA+CGG - chr5.4:1275056-1275075 None:intergenic 45.0%
CACAACGACAGCAATATGCA+TGG - chr5.4:1272523-1272542 None:intergenic 45.0%
CACCCATAAACCTTTCAAGC+TGG - chr5.4:1273410-1273429 None:intergenic 45.0%
CACTGAGATTCTCAATGGAG+AGG + chr5.4:1273710-1273729 MS.gene046910:CDS 45.0%
CATGCATATTGCTGTCGTTG+TGG + chr5.4:1272521-1272540 MS.gene046910:intron 45.0%
CCATAAACCTTTCAAGCTGG+CGG - chr5.4:1273407-1273426 None:intergenic 45.0%
CGCCAGCTTGAAAGGTTTAT+GGG + chr5.4:1273405-1273424 MS.gene046910:intron 45.0%
CGGCGGTATAGTTCATGAAT+TGG + chr5.4:1275266-1275285 MS.gene046910:CDS 45.0%
CTCTGAGCATCATTAGGGTT+AGG - chr5.4:1272365-1272384 None:intergenic 45.0%
GAAGTCCTTTCAACTGGAGT+GGG + chr5.4:1274121-1274140 MS.gene046910:CDS 45.0%
GACAGCAATATGCATGGCAA+CGG - chr5.4:1272517-1272536 None:intergenic 45.0%
GACTGGAGAATGCTCTCTTA+AGG + chr5.4:1273211-1273230 MS.gene046910:CDS 45.0%
GATGGGTGCATAACAAATGC+AGG + chr5.4:1275608-1275627 MS.gene046910:CDS 45.0%
GCAATGTTTGTAACCGCATC+AGG - chr5.4:1272785-1272804 None:intergenic 45.0%
GCTAATGGTCCCAACACATT+GGG + chr5.4:1273756-1273775 MS.gene046910:CDS 45.0%
GGAAAAATAGCGAATCCGGA+AGG - chr5.4:1275587-1275606 None:intergenic 45.0%
GTCATGACCATTACAACCTC+CGG - chr5.4:1274998-1275017 None:intergenic 45.0%
GTTACCACATGCAACGTATG+TGG + chr5.4:1273141-1273160 MS.gene046910:CDS 45.0%
TAATTGGTGGGAAGCCAAAG+AGG - chr5.4:1273687-1273706 None:intergenic 45.0%
TCCAGATGGAATATGGGTAG+TGG + chr5.4:1274350-1274369 MS.gene046910:CDS 45.0%
TCCATATGTCCTAGCCAGTT+TGG - chr5.4:1273661-1273680 None:intergenic 45.0%
TGAAGTCCTTTCAACTGGAG+TGG + chr5.4:1274120-1274139 MS.gene046910:CDS 45.0%
TTCAACCTGATTGAACCGGA+TGG - chr5.4:1273939-1273958 None:intergenic 45.0%
TTGACGAGTAGGAACATGTG+GGG - chr5.4:1274301-1274320 None:intergenic 45.0%
! TGGAACGTTGGTTGTGTTGT+TGG - chr5.4:1272163-1272182 None:intergenic 45.0%
!! AGAGCTTGCTGTTGTTGGAA+TGG + chr5.4:1273626-1273645 MS.gene046910:CDS 45.0%
!! CAATTTGTTGCTGAGTGTGG+CGG - chr5.4:1272202-1272221 None:intergenic 45.0%
!! GCATTTGTTATGCACCCATC+TGG - chr5.4:1275608-1275627 None:intergenic 45.0%
!! TGGACAAAGGTACCTGGAAA+CGG + chr5.4:1274971-1274990 MS.gene046910:CDS 45.0%
!!! AGGTCCTTTTTCTGGAACGT+TGG - chr5.4:1272175-1272194 None:intergenic 45.0%
!!! TCTGCTGATTTTGGAGTTGC+TGG + chr5.4:1273504-1273523 MS.gene046910:CDS 45.0%
!!! TGCTTTTGGAGCTAAACGCT+GGG + chr5.4:1274698-1274717 MS.gene046910:CDS 45.0%
!!! TTGCTTTTGGAGCTAAACGC+TGG + chr5.4:1274697-1274716 MS.gene046910:CDS 45.0%
!! AACAAATTTAATAATATAAA+TGG - chr5.4:1274045-1274064 None:intergenic 5.0%
!!! ACTATTATTAATATTATTTT+AGG - chr5.4:1274523-1274542 None:intergenic 5.0%
!!! TAACTAATTATATTTTATAT+AGG + chr5.4:1273032-1273051 MS.gene046910:intron 5.0%
AAACGGACCGGAGGTTGTAA+TGG + chr5.4:1274988-1275007 MS.gene046910:CDS 50.0%
AACGTTCCACGGGAACATCA+TGG + chr5.4:1274771-1274790 MS.gene046910:CDS 50.0%
ACAACCAGAGGGTCTTCTGT+TGG - chr5.4:1274445-1274464 None:intergenic 50.0%
AGAACCAACAGAAGACCCTC+TGG + chr5.4:1274438-1274457 MS.gene046910:CDS 50.0%
AGAGAAGAGAGCTGAGCCTT+CGG + chr5.4:1272381-1272400 MS.gene046910:CDS 50.0%
ATATTGGCACGAGAGTCTGC+AGG - chr5.4:1273447-1273466 None:intergenic 50.0%
ATGATGTTCCCGTGGAACGT+TGG - chr5.4:1274772-1274791 None:intergenic 50.0%
ATTGGTGGGAAGCCAAAGAG+GGG - chr5.4:1273685-1273704 None:intergenic 50.0%
CCAAACCATCCGGTTCAATC+AGG + chr5.4:1273931-1273950 MS.gene046910:intron 50.0%
CCGCCAGCTTGAAAGGTTTA+TGG + chr5.4:1273404-1273423 MS.gene046910:intron 50.0%
CCTGATTGAACCGGATGGTT+TGG - chr5.4:1273934-1273953 None:intergenic 50.0%
CGTCTTACTCTGCTTCCTTC+CGG + chr5.4:1275569-1275588 MS.gene046910:CDS 50.0%
CTGAACTGACCAAACTGGCT+AGG + chr5.4:1273649-1273668 MS.gene046910:CDS 50.0%
GCACTTAGCACTACACTGAC+GGG - chr5.4:1275055-1275074 None:intergenic 50.0%
GCCACTACCCATATTCCATC+TGG - chr5.4:1274354-1274373 None:intergenic 50.0%
GGAGTTGCTGGTGGTAACAA+TGG + chr5.4:1273516-1273535 MS.gene046910:CDS 50.0%
GGCTAATGGTCCCAACACAT+TGG + chr5.4:1273755-1273774 MS.gene046910:CDS 50.0%
GTAGGAGAGGCTTTCACTGT+TGG + chr5.4:1273555-1273574 MS.gene046910:CDS 50.0%
GTCATGTGACATTTCCCCAG+CGG - chr5.4:1273178-1273197 None:intergenic 50.0%
TACCTCCCACTCCAGTTGAA+AGG - chr5.4:1274129-1274148 None:intergenic 50.0%
TGAAAGCCTCTCCTACCATG+CGG - chr5.4:1273551-1273570 None:intergenic 50.0%
TGACGATCAGCAGCTAAGAC+TGG + chr5.4:1273194-1273213 MS.gene046910:CDS 50.0%
TGAGGGTTCGAAAGAATCCG+TGG + chr5.4:1273788-1273807 MS.gene046910:CDS 50.0%
TGTTGGGACCATTAGCCCTT+GGG - chr5.4:1273752-1273771 None:intergenic 50.0%
TTCATGAACTATACCGCCGG+CGG - chr5.4:1275265-1275284 None:intergenic 50.0%
! ACAGTGAGATTGACTCCGGA+GGG + chr5.4:1274869-1274888 MS.gene046910:intron 50.0%
! TACAGTGAGATTGACTCCGG+AGG + chr5.4:1274868-1274887 MS.gene046910:intron 50.0%
! TTTGGCTTCCAGTTCCTCCA+AGG + chr5.4:1275086-1275105 MS.gene046910:CDS 50.0%
!! AAAGGTACCTGGAAACGGAC+CGG + chr5.4:1274976-1274995 MS.gene046910:CDS 50.0%
!! CATGCTTGGACAAAGGTACC+TGG + chr5.4:1274965-1274984 MS.gene046910:CDS 50.0%
!!! GCTGATTTTGGAGTTGCTGG+TGG + chr5.4:1273507-1273526 MS.gene046910:CDS 50.0%
AAACGGCCACCAACGTTCCA+CGG + chr5.4:1274760-1274779 MS.gene046910:CDS 55.0%
AACACCCTCCTTGGAGGAAC+TGG - chr5.4:1275097-1275116 None:intergenic 55.0%
ACGAGTAGGAACATGTGGGG+AGG - chr5.4:1274298-1274317 None:intergenic 55.0%
ACTTCAATGGCGGCCTGATG+CGG + chr5.4:1272769-1272788 MS.gene046910:intron 55.0%
ATGTTCCCGTGGAACGTTGG+TGG - chr5.4:1274769-1274788 None:intergenic 55.0%
CAGTGGGATATTCTCTCCGC+CGG + chr5.4:1275246-1275265 MS.gene046910:intron 55.0%
CGAGAGTCTGCAGGATCTGT+TGG - chr5.4:1273438-1273457 None:intergenic 55.0%
CGAGTAGGAACATGTGGGGA+GGG - chr5.4:1274297-1274316 None:intergenic 55.0%
CTACGATGGAGCCTTGCAAG+TGG + chr5.4:1274150-1274169 MS.gene046910:CDS 55.0%
GAGTAGGAACATGTGGGGAG+GGG - chr5.4:1274296-1274315 None:intergenic 55.0%
GCTTCCAGTTCCTCCAAGGA+GGG + chr5.4:1275090-1275109 MS.gene046910:CDS 55.0%
GGACATATGGACCCCCTCTT+TGG + chr5.4:1273670-1273689 MS.gene046910:CDS 55.0%
GGAGTGGGAGGTAACTACGA+TGG + chr5.4:1274136-1274155 MS.gene046910:CDS 55.0%
GGGTTCGAAAGAATCCGTGG+TGG + chr5.4:1273791-1273810 MS.gene046910:CDS 55.0%
GTCCTTTCAACTGGAGTGGG+AGG + chr5.4:1274124-1274143 MS.gene046910:CDS 55.0%
GTGGAAGTTCCACTACCGCT+GGG + chr5.4:1273160-1273179 MS.gene046910:CDS 55.0%
GTGTTGGGACCATTAGCCCT+TGG - chr5.4:1273753-1273772 None:intergenic 55.0%
TGACATTTCCCCAGCGGTAG+TGG - chr5.4:1273172-1273191 None:intergenic 55.0%
TGGAAGTTCCACTACCGCTG+GGG + chr5.4:1273161-1273180 MS.gene046910:CDS 55.0%
TGTGGAAGTTCCACTACCGC+TGG + chr5.4:1273159-1273178 MS.gene046910:CDS 55.0%
TTGGGTCTAACCCAGTCCGA+AGG - chr5.4:1272400-1272419 None:intergenic 55.0%
TTGGTGGGAAGCCAAAGAGG+GGG - chr5.4:1273684-1273703 None:intergenic 55.0%
! CCACATGCAAGGCTAGCTCT+GGG + chr5.4:1275701-1275720 MS.gene046910:CDS 55.0%
! GCGGCGATAGGTCCTTTTTC+TGG - chr5.4:1272183-1272202 None:intergenic 55.0%
! TCCACATGCAAGGCTAGCTC+TGG + chr5.4:1275700-1275719 MS.gene046910:CDS 55.0%
AACGGCCACCAACGTTCCAC+GGG + chr5.4:1274761-1274780 MS.gene046910:CDS 60.0%
AAGCCTCTCCTACCATGCGG+TGG - chr5.4:1273548-1273567 None:intergenic 60.0%
ACAACCTCCGGTCCGTTTCC+AGG - chr5.4:1274986-1275005 None:intergenic 60.0%
ACACCACCGCATGGTAGGAG+AGG + chr5.4:1273542-1273561 MS.gene046910:CDS 60.0%
AGAGAGCTGAGCCTTCGGAC+TGG + chr5.4:1272386-1272405 MS.gene046910:CDS 60.0%
CAATGGAGCACACCACCGCA+TGG + chr5.4:1273533-1273552 MS.gene046910:CDS 60.0%
GAACAGGCGCACTTCGCTGA+AGG + chr5.4:1272442-1272461 MS.gene046910:CDS 60.0%
GACTTGAGTCGCCGCCATTC+AGG - chr5.4:1275550-1275569 None:intergenic 60.0%
GAGAGCTGAGCCTTCGGACT+GGG + chr5.4:1272387-1272406 MS.gene046910:CDS 60.0%
GGCTTCCAGTTCCTCCAAGG+AGG + chr5.4:1275089-1275108 MS.gene046910:CDS 60.0%
TGGGATATTCTCTCCGCCGG+CGG + chr5.4:1275249-1275268 MS.gene046910:CDS 60.0%
TTGCTGAGTGTGGCGGCGAT+AGG - chr5.4:1272195-1272214 None:intergenic 60.0%
!! CCCAGAGCTAGCCTTGCATG+TGG - chr5.4:1275704-1275723 None:intergenic 60.0%
GGAGCACACCACCGCATGGT+AGG + chr5.4:1273537-1273556 MS.gene046910:CDS 65.0%
GGTACCTGGAAACGGACCGG+AGG + chr5.4:1274979-1274998 MS.gene046910:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 1272047 1275802 1272047 ID=MS.gene046910
chr5.4 mRNA 1272047 1275802 1272047 ID=MS.gene046910.t1;Parent=MS.gene046910
chr5.4 exon 1272047 1272234 1272047 ID=MS.gene046910.t1.exon1;Parent=MS.gene046910.t1
chr5.4 CDS 1272047 1272234 1272047 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1272346 1272463 1272346 ID=MS.gene046910.t1.exon2;Parent=MS.gene046910.t1
chr5.4 CDS 1272346 1272463 1272346 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1273054 1273239 1273054 ID=MS.gene046910.t1.exon3;Parent=MS.gene046910.t1
chr5.4 CDS 1273054 1273239 1273054 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1273411 1273857 1273411 ID=MS.gene046910.t1.exon4;Parent=MS.gene046910.t1
chr5.4 CDS 1273411 1273857 1273411 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1274070 1274171 1274070 ID=MS.gene046910.t1.exon5;Parent=MS.gene046910.t1
chr5.4 CDS 1274070 1274171 1274070 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1274273 1274497 1274273 ID=MS.gene046910.t1.exon6;Parent=MS.gene046910.t1
chr5.4 CDS 1274273 1274497 1274273 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1274621 1274792 1274621 ID=MS.gene046910.t1.exon7;Parent=MS.gene046910.t1
chr5.4 CDS 1274621 1274792 1274621 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1274873 1275150 1274873 ID=MS.gene046910.t1.exon8;Parent=MS.gene046910.t1
chr5.4 CDS 1274873 1275150 1274873 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1275249 1275344 1275249 ID=MS.gene046910.t1.exon9;Parent=MS.gene046910.t1
chr5.4 CDS 1275249 1275344 1275249 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
chr5.4 exon 1275437 1275802 1275437 ID=MS.gene046910.t1.exon10;Parent=MS.gene046910.t1
chr5.4 CDS 1275437 1275802 1275437 ID=cds.MS.gene046910.t1;Parent=MS.gene046910.t1
Gene Sequence

>MS.gene046910

ATGGTTAATACTCCACATCAAAATCACATCAAGAACATGTATCATCAGAATAGGATGACAAGAACAAGAGAAGAAGCAAACCAAATGAACATGGAGGCTACTTCAAGTGATGACCAACAACACAACCAACGTTCCAGAAAAAGGACCTATCGCCGCCACACTCAGCAACAAATTGATGAAATGGATACGTAGGAACCATTTTTATATATTTTATCTGAATGTGATCATATATAATATATCTTTACTTGCTCTATATTTTTGGTATATTAATTTTTTGAACTTGGTTTTGTCATCATCAGTTTCTTCAAGCAGTGTCCTAACCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACTGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCGCTGAAGGTAATTTAGACCAACTGCATGTAATTTTTTTTTTGTTGCAAGCATTGTGACCGTTGCCATGCATATTGCTGTCGTTGTGGTGTAAATTTAATTTTTATTAGCATCAAATATTATAAACCATTATTATCAACTCTTACATATATTTCATTATCAACTCTGTTACTTTTACATATCCTCTAAATTTATCACCTATGTTACAAAGAAAAATAATTTGTTTGATGACTAAATAGTCTGTTGCGGCCTAATGCAGTTTCATGTTATGCGATGCAGCATGACAATGCAATTTTTACTGTTATTTACATTGCACTTCAATGGCGGCCTGATGCGGTTACAAACATTGCCGCAACCGCAATATTATGATTGCATCATGATCCCCAAATTTGAAACACTAATAATATATATATATATATATATATATACACACACACACACACACACACACACACACACACACACACACACACACTTGCTTGCTTGCTAGAGAATAGATATTTGAAATTTAAGTTATGAACTTTATTAATTAATTAATTAATTAAATGCTTCTTTTCGGCGGTGATCTCATAATATATAACTAATTATATTTTATATAGGTTCAAACTGATAGGGAAGAGAATGAGCTATTAAAGATTGAGAATGAAAAACTTCGAGATGAAGTTAATAGATACAGGGGGGCAATTGTTACCACATGCAACGTATGTGGAAGTTCCACTACCGCTGGGGAAATGTCACATGACGATCAGCAGCTAAGACTGGAGAATGCTCTCTTAAGGAAAGAGGTACCTCATCGTTTGTTACGATTTTCAAAATAAATATGTGCTGAAAAACAAATTAAAATTATGATCGAACAATTATGATTAACTTTTATCGTGTAAGTACATTAAATTAAATCATTCTTAATTATTCGCAACAACTTTAATTGTTTCATTGTTTGTAAAAAAAACCGCCAGCTTGAAAGGTTTATGGGTGAGACGCCAACAGATCCTGCAGACTCTCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTATTTCACGCTCTGCTGATTTTGGAGTTGCTGGTGGTAACAATGGAGCACACCACCGCATGGTAGGAGAGGCTTTCACTGTTGGTAGCTCCTCAGTACAGATTAAGGGTCTTAATGAGAAGCAAAGGATTGTAGAGCTTGCTGTTGTTGGAATGGCTGAACTGACCAAACTGGCTAGGACATATGGACCCCCTCTTTGGCTTCCCACCAATTATGTCACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGCTAATGGTCCCAACACATTGGGATTAAAGCTTGAGGGTTCGAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGGTGAGTCATTAATGTTCATGCTACCAACACTTTCTAAGCCTTATTATTTGCATTAATGTTTCAAAAACTTGGACCAAACCATCCGGTTCAATCAGGTTGAACCAAGTATTTTTAGAATATTATTCTTTTATTTTAAAAAAGAACATTGGTTTACATGCATACTAAAAATATATAAAATTTCCCTCCATTTATATTATTAAATTTGTTTTCAGAATCGATGGTCAAATATGTTTTGCGGCATTGTTTCTAAAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGGTAAGTACTAATTTAATTTCTTATACTTAATTTTAAAGAATTAATTTTAATATGTATTTCATCTAATTAATCTTTTTTTTTTTTTAAATGTTATTTTTTAGATGACAGCTGAATTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCATCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTGTTAAATGCAACATCTGCTAGTAGTAGTAGTAGTAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACACTCCCAAATGGTCTCACTAAGGTCTTACCACATTTCACCTTCACCTAAAATAATATTAATAATAGTTTATAATGTTGGATTATTTTAATGTGGATTAGTATAGTTAATTTTATCAATTATTTGTTGTCTTGTTTTTTTAAACAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCTTTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAATCTGATCGTCTTGTTTTTAAAACGGCCACCAACGTTCCACGGGAACATCATGGTATATAACCTTTTTTTTTTAAAAAAAATATATATATAAATGACAGTTATATATTTATGTATAACATTATATATGTACAGTGAGATTGACTCCGGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACGAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTAGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATGTATGTATCTACTAAGACATGTCTAAAGTTCTGTAATGTGTTATTAGCACAATTAATTAATTAATTGTTGAAGCTTACATATTTAATTGAATTTACAGTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGTCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTGTAAGTTATGTAAAATTAAAATTGGTATAGTATATTAGTGATTAGAACACATATTCTAACGTTCTCTTTCGCTAAATATATTTTTCCTGTAGAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGGTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTTACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGCATAACAAATGCAGGACCAATTATGAATGTCGGATCTGGAGGGTCTCTTGTCACAGTTGCATTTCAGATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACTGTTAACACTTTGATCAAGAACACTGTGGAAAGGATTAAAACTGCAGTGATGCCTAATGGCATCTAA
Protein sequence

>MS.gene046910.t1

MVNTPHQNHIKNMYHQNRMTRTREEANQMNMEATSSDDQQHNQRSRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDREENELLKIENEKLRDEVNRYRGAIVTTCNVCGSSTTAGEMSHDDQQLRLENALLRKELERFMGETPTDPADSRANITSSNNSTHVISRSADFGVAGGNNGAHHRMVGEAFTVGSSSVQIKGLNEKQRIVELAVVGMAELTKLARTYGPPLWLPTNYVTEILNGEEYMKYFPRANGPNTLGLKLEGSKESVVVMINAPDLVDILMDVNRWSNMFCGIVSKAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNATSASSSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLVFKTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNAGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIKNTVERIKTAVMPNGI