AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046992

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046992.t1 MTR_8g107210 85.714 378 17 9 1 361 1 358 0.0 609
MS.gene046992.t1 MTR_8g095580 83.019 159 9 4 1 154 1 146 6.12e-86 257
MS.gene046992.t1 MTR_3g088485 82.803 157 11 2 1 154 1 144 4.93e-85 254
MS.gene046992.t1 MTR_4g084550 50.318 157 61 4 42 191 26 172 1.64e-37 133
MS.gene046992.t1 MTR_7g060630 74.627 67 17 0 88 154 6 72 2.91e-28 109
MS.gene046992.t1 MTR_1g019130 75.000 64 16 0 89 152 89 152 2.17e-27 108
MS.gene046992.t1 MTR_4g063735 63.636 77 26 1 90 166 25 99 6.65e-27 107
MS.gene046992.t1 MTR_1g019130 75.000 64 16 0 89 152 89 152 1.18e-26 106
MS.gene046992.t1 MTR_5g081990 71.429 63 18 0 90 152 33 95 6.73e-26 102
MS.gene046992.t1 MTR_5g021930 70.769 65 18 1 88 151 28 92 2.80e-25 104
MS.gene046992.t1 MTR_7g025010 50.000 62 31 0 90 151 47 108 1.30e-15 78.6
MS.gene046992.t1 MTR_2g015000 50.000 62 31 0 90 151 55 116 1.85e-15 77.8
MS.gene046992.t1 MTR_7g023810 35.135 111 68 1 90 196 68 178 5.10e-15 72.8
MS.gene046992.t1 MTR_4g088070 45.902 61 33 0 90 150 29 89 6.19e-14 72.8
MS.gene046992.t1 MTR_1g115315 39.506 81 47 1 90 168 85 165 1.03e-12 67.8
MS.gene046992.t1 MTR_1g115315 39.506 81 47 1 90 168 85 165 1.26e-12 67.8
MS.gene046992.t1 MTR_4g088080 44.262 61 34 0 90 150 40 100 2.79e-12 67.4
MS.gene046992.t1 MTR_3g115620 42.623 61 35 0 90 150 82 142 4.43e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046992.t1 AT3G18010 37.065 402 160 14 1 361 1 350 6.28e-64 207
MS.gene046992.t1 AT2G01500 57.692 104 38 3 43 144 16 115 3.56e-29 114
MS.gene046992.t1 AT2G28610 71.014 69 20 0 86 154 4 72 7.83e-29 112
MS.gene046992.t1 AT5G59340 61.905 84 30 1 83 166 7 88 4.54e-28 110
MS.gene046992.t1 AT3G11260 52.000 100 42 2 79 178 13 106 2.00e-26 104
MS.gene046992.t1 AT1G46480 70.769 65 19 0 88 152 88 152 2.31e-26 104
MS.gene046992.t1 AT1G46480 70.769 65 19 0 88 152 88 152 1.97e-25 103
MS.gene046992.t1 AT2G17950 69.697 66 19 1 87 151 35 100 1.01e-24 102
MS.gene046992.t1 AT5G05770 59.459 74 28 1 88 161 27 98 1.78e-23 94.4
MS.gene046992.t1 AT5G45980 45.570 79 38 1 90 168 55 128 5.56e-16 78.2
MS.gene046992.t1 AT2G33880 50.000 62 31 0 90 151 55 116 4.26e-15 76.3
MS.gene046992.t1 AT2G33880 50.000 62 31 0 90 151 55 116 4.30e-15 76.3
MS.gene046992.t1 AT4G35550 47.541 61 32 0 90 150 99 159 4.82e-13 68.9
MS.gene046992.t1 AT1G20700 33.684 95 59 1 90 180 33 127 1.38e-11 62.4
MS.gene046992.t1 AT1G20700 30.252 119 77 2 90 204 95 211 2.80e-11 62.8
MS.gene046992.t1 AT1G20700 33.684 95 59 1 90 180 95 189 3.37e-11 62.4
MS.gene046992.t1 AT3G03660 42.029 69 40 0 73 141 16 84 3.61e-11 63.5
MS.gene046992.t1 AT3G03660 42.029 69 40 0 73 141 16 84 4.90e-11 63.5
MS.gene046992.t1 AT3G03660 42.029 69 40 0 73 141 16 84 6.29e-11 63.2
MS.gene046992.t1 AT5G17810 45.455 55 30 0 87 141 18 72 7.75e-11 62.4
MS.gene046992.t1 AT3G03660 42.029 69 40 0 73 141 16 84 7.82e-11 63.2
MS.gene046992.t1 AT5G17810 45.455 55 30 0 87 141 18 72 8.04e-11 62.4
MS.gene046992.t1 AT5G17810 45.455 55 30 0 87 141 18 72 8.04e-11 62.4

Find 76 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATCTCCATTCCTTAT+TGG 0.159741 4.3:-365070 None:intergenic
ACAGCAAAGAAGAAACTTTA+TGG 0.180399 4.3:+364772 MS.gene046992:CDS
GCCACCATGAATGCGGTTTA+AGG 0.219928 4.3:-363171 None:intergenic
TCCAGTGCTCTTAACTGTTC+TGG 0.231980 4.3:-363421 None:intergenic
TCTCTGTCTCTTTGTGTTGC+TGG 0.237936 4.3:-365129 None:intergenic
CATGATCTCCATTCCTTATT+GGG 0.239327 4.3:-365069 None:intergenic
ACTGCCCAGCTTAGAAAGTT+TGG 0.297339 4.3:+363499 MS.gene046992:CDS
GTAATTCTGCTTCATCGAAT+TGG 0.317991 4.3:-364751 None:intergenic
CACAGTAACAACTAGACTTA+TGG 0.319387 4.3:+364892 MS.gene046992:CDS
GTTATAGTTGAAGTGTTGTT+AGG 0.334243 4.3:-363143 None:intergenic
TAAGCTGGGCAGTGATTTGT+TGG 0.366393 4.3:-363489 None:intergenic
CCTTCCTTAAACCGCATTCA+TGG 0.383571 4.3:+363167 MS.gene046992:CDS
GTGTTGTTAGGAGAAGTAGT+AGG 0.385300 4.3:-363131 None:intergenic
TGTAGTTGATACTGTTTAAG+TGG 0.389042 4.3:-365003 None:intergenic
TTGCAGTAGAGGTGTTTAAG+AGG 0.415990 4.3:-364844 None:intergenic
GCTCTTAACTGTTCTGGTGT+TGG 0.418756 4.3:-363415 None:intergenic
ACGGAAGAAACTCAATAAAC+TGG 0.421182 4.3:-365180 None:intergenic
GCTCTTGAAAAGAAAGACTT+AGG 0.434053 4.3:+363625 MS.gene046992:CDS
AAATGAATAAGTTGAAATCA+TGG 0.434791 4.3:-364934 None:intergenic
GAACTCACCACAACTGCTGC+TGG 0.437507 4.3:-363382 None:intergenic
CAGCAGTTGTGGTGAGTTCA+AGG 0.440070 4.3:+363386 MS.gene046992:CDS
GTAGGGACTGGGACTGGTCT+TGG 0.448389 4.3:-363113 None:intergenic
CATACTACAACTACAAAGAA+AGG 0.456924 4.3:+364966 MS.gene046992:CDS
AACATGGCTGATTATCCATT+CGG 0.461072 4.3:+363065 MS.gene046992:CDS
TGCAGTAGAGGTGTTTAAGA+GGG 0.463988 4.3:-364843 None:intergenic
TGTTGTTAGGAGAAGTAGTA+GGG 0.464395 4.3:-363130 None:intergenic
TCCTTATTGGGAAAAGTTGA+AGG 0.475905 4.3:-365057 None:intergenic
AGGAAGACTAGTACTGGTAC+TGG 0.479435 4.3:-363866 None:intergenic
CCAATAAGGAATGGAGATCA+TGG 0.480192 4.3:+365070 MS.gene046992:CDS
TCTAGTTGTTACTGTGGTTG+TGG 0.492333 4.3:-364885 None:intergenic
CAGCAGCTGATTCCATTTGA+CGG 0.494340 4.3:-363591 None:intergenic
AGAAACTCAATAAACTGGTT+GGG 0.503624 4.3:-365175 None:intergenic
AAGAAACTCAATAAACTGGT+TGG 0.507314 4.3:-365176 None:intergenic
ACCAGAACAGTTAAGAGCAC+TGG 0.518122 4.3:+363420 MS.gene046992:CDS
AGAATCACAAAGCTAGAGAA+AGG 0.519499 4.3:+363557 MS.gene046992:CDS
CTGATTATCCATTCGGTGGA+AGG 0.525296 4.3:+363072 MS.gene046992:CDS
ATACTACAACTACAAAGAAA+GGG 0.528240 4.3:+364967 MS.gene046992:CDS
TGTTGGATTTGTTCAGCAGA+AGG 0.532776 4.3:-363472 None:intergenic
AATGAATAAGTTGAAATCAT+GGG 0.536539 4.3:-364933 None:intergenic
TGCAAGAGGAAGACTAGTAC+TGG 0.539329 4.3:-363872 None:intergenic
GAAGTAGTAGGGACTGGGAC+TGG 0.539424 4.3:-363119 None:intergenic
GGGACTGGTCTTGGCATGAG+AGG 0.539540 4.3:-363104 None:intergenic
GCTAGCTGTTGTTGCAGTAG+AGG 0.542262 4.3:-364855 None:intergenic
GATCAGTACTCTAGAACAGA+TGG 0.548364 4.3:+364722 MS.gene046992:intron
CATTCGGTGGAAGGAAACTA+AGG 0.548710 4.3:+363081 MS.gene046992:CDS
AAAGAAGAAACTTTATGGAA+AGG 0.550327 4.3:+364777 MS.gene046992:CDS
CTTAGTTTCCTTCCACCGAA+TGG 0.550835 4.3:-363080 None:intergenic
TTAGGAGAAGTAGTAGGGAC+TGG 0.552441 4.3:-363125 None:intergenic
TAATAATCCAGCAGCAGTTG+TGG 0.553191 4.3:+363375 MS.gene046992:CDS
CCTTATTGGGAAAAGTTGAA+GGG 0.559443 4.3:-365056 None:intergenic
TGGATGGTGGGTTACAATGA+AGG 0.562024 4.3:+363032 MS.gene046992:CDS
CTGGAAGAATTGTATAGAAG+AGG 0.567704 4.3:+363439 MS.gene046992:CDS
CATAAGTCTAGTTGTTACTG+TGG 0.571838 4.3:-364891 None:intergenic
TACTAGTCTTCCTCTTGCAG+AGG 0.572605 4.3:+363876 MS.gene046992:CDS
AGTTGTTACTGTGGTTGTGG+TGG 0.572763 4.3:-364882 None:intergenic
CCATGAATGCGGTTTAAGGA+AGG 0.585809 4.3:-363167 None:intergenic
GAATTATAGACCTCTGCAAG+AGG 0.592853 4.3:-363886 None:intergenic
TTGTAGTTGTAGTATGTGTG+AGG 0.596125 4.3:-364959 None:intergenic
TAGGAGAAGTAGTAGGGACT+GGG 0.599416 4.3:-363124 None:intergenic
ACTGGTACTGGAATTTGTAG+AGG 0.605073 4.3:-363854 None:intergenic
TACTGCAACAACAGCTAGCG+TGG 0.608572 4.3:+364859 MS.gene046992:CDS
GTAGAGGTGTTTAAGAGGGT+AGG 0.618222 4.3:-364839 None:intergenic
ATGGTGGGTTACAATGAAGG+TGG 0.633455 4.3:+363035 MS.gene046992:CDS
CTGGTACTGGAATTTGTAGA+GGG 0.635755 4.3:-363853 None:intergenic
AGTTGACAACATGTGGATGG+TGG 0.636173 4.3:+363019 None:intergenic
ATGGCTGATTATCCATTCGG+TGG 0.637470 4.3:+363068 MS.gene046992:CDS
AATCATTGCCACCATGAATG+CGG 0.641369 4.3:-363178 None:intergenic
AGTACTCTAGAACAGATGGA+TGG 0.652013 4.3:+364726 MS.gene046992:intron
TCCTTAAACCGCATTCATGG+TGG 0.652436 4.3:+363170 MS.gene046992:CDS
CATCACAATCTGCAGCAGCA+AGG 0.652597 4.3:+363215 MS.gene046992:CDS
GTTGACAACATGTGGATGGT+GGG 0.672963 4.3:+363020 None:intergenic
CCTAGTTGACAACATGTGGA+TGG 0.687638 4.3:+363016 None:intergenic
TGAAGGTGGTGAGTTCAACA+TGG 0.718834 4.3:+363049 MS.gene046992:CDS
CAGTTGTGGTGAGTTCAAGG+TGG 0.724586 4.3:+363389 MS.gene046992:CDS
TTATGGAAAGGAATGCCACG+TGG 0.750564 4.3:+364789 MS.gene046992:CDS
TAACTGCATCATATGCCACG+TGG 0.781883 4.3:-364804 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAATAAAAAA+AGG - chr4.3:364458-364477 None:intergenic 0.0%
!! TAAAATAAAATAAAAAAAGG+TGG - chr4.3:364455-364474 None:intergenic 10.0%
!! AACATATATACAAACAATAT+TGG - chr4.3:363286-363305 None:intergenic 15.0%
!! GAAAGAAAGAATTTAATTAA+AGG - chr4.3:364640-364659 None:intergenic 15.0%
!! TTTAAGGAATAATAATCATA+AGG + chr4.3:364025-364044 MS.gene046992:intron 15.0%
!! AAAAAACAAAAACTAACCAT+AGG - chr4.3:364551-364570 None:intergenic 20.0%
!! AGAAAAGAAAAGAAAAGAAA+AGG + chr4.3:364164-364183 MS.gene046992:intron 20.0%
!! AGGTAAGAAAAGAAAAAAAA+GGG - chr4.3:364531-364550 None:intergenic 20.0%
!! TAGGTAAGAAAAGAAAAAAA+AGG - chr4.3:364532-364551 None:intergenic 20.0%
!! TTTCATAGAAAGAAGAATAA+TGG - chr4.3:364367-364386 None:intergenic 20.0%
!!! AAATGAATAAGTTGAAATCA+TGG - chr4.3:364937-364956 None:intergenic 20.0%
!!! AATGAATAAGTTGAAATCAT+GGG - chr4.3:364936-364955 None:intergenic 20.0%
!!! ATTATTCCTTAAAGACTTTT+TGG - chr4.3:364018-364037 None:intergenic 20.0%
!!! TTTAGTATTTTTTTGAGTTG+AGG + chr4.3:364590-364609 MS.gene046992:intron 20.0%
!!! TTTTTTTCTTTTCTTACCTA+TGG + chr4.3:364532-364551 MS.gene046992:intron 20.0%
! AAAAGAGATATGTATTTGTC+TGG - chr4.3:363973-363992 None:intergenic 25.0%
! AAAATACTAAATAACGTGTG+AGG - chr4.3:364581-364600 None:intergenic 25.0%
! AAAGAAGAAACTTTATGGAA+AGG + chr4.3:364777-364796 MS.gene046992:CDS 25.0%
! AAATAAAAAAAGGTGGATGT+TGG - chr4.3:364448-364467 None:intergenic 25.0%
! AATTCACCAAAAAGTCTTTA+AGG + chr4.3:364009-364028 MS.gene046992:intron 25.0%
! AGAAAGTTTGGAAAAATTGA+AGG + chr4.3:363511-363530 MS.gene046992:CDS 25.0%
! ATACTACAACTACAAAGAAA+GGG + chr4.3:364967-364986 MS.gene046992:CDS 25.0%
! CTGTAATTATTTAGTGTTAG+AGG + chr4.3:363662-363681 MS.gene046992:intron 25.0%
! GTATGTAGTATGTACTAATA+AGG - chr4.3:363693-363712 None:intergenic 25.0%
!! AAGGCAAAAATGTTTTCTAT+TGG + chr4.3:363530-363549 MS.gene046992:CDS 25.0%
!! TGATATGTTTTATCATGAGT+AGG + chr4.3:363325-363344 MS.gene046992:intron 25.0%
!!! AATTTGTTGGGAAATGAAAA+GGG + chr4.3:364217-364236 MS.gene046992:intron 25.0%
!!! ACTTTTTGGTGAATTGATTA+AGG - chr4.3:364004-364023 None:intergenic 25.0%
!!! CTTTTTGGTGAATTGATTAA+GGG - chr4.3:364003-364022 None:intergenic 25.0%
!!! TAATTTGTTGGGAAATGAAA+AGG + chr4.3:364216-364235 MS.gene046992:intron 25.0%
!!! TTGTTTTTCTTTTTGTCAAC+AGG + chr4.3:363784-363803 MS.gene046992:intron 25.0%
AAGAAACTCAATAAACTGGT+TGG - chr4.3:365179-365198 None:intergenic 30.0%
ACAGCAAAGAAGAAACTTTA+TGG + chr4.3:364772-364791 MS.gene046992:CDS 30.0%
AGAAACTCAATAAACTGGTT+GGG - chr4.3:365178-365197 None:intergenic 30.0%
AGGAATCTGTTTCAATTCAA+AGG + chr4.3:364675-364694 MS.gene046992:intron 30.0%
CATACTACAACTACAAAGAA+AGG + chr4.3:364966-364985 MS.gene046992:CDS 30.0%
CTTTCTTTCTTTCTTTCTAC+AGG + chr4.3:364655-364674 MS.gene046992:intron 30.0%
GGAATCTGTTTCAATTCAAA+GGG + chr4.3:364676-364695 MS.gene046992:intron 30.0%
GTGAAGTCAAATTAAAGCAA+GGG - chr4.3:364420-364439 None:intergenic 30.0%
TAAATAACGTGTGAGGAAAA+AGG - chr4.3:364574-364593 None:intergenic 30.0%
TACATACTACATACATGACA+TGG + chr4.3:363699-363718 MS.gene046992:intron 30.0%
TCATTCATTCGTATTGTTGT+TGG + chr4.3:363736-363755 MS.gene046992:intron 30.0%
TGCTGTTATGAAATTTAGCT+GGG + chr4.3:364275-364294 MS.gene046992:intron 30.0%
TGTGAAGTCAAATTAAAGCA+AGG - chr4.3:364421-364440 None:intergenic 30.0%
! GAAAGAAGAATAATGGAGAT+AGG - chr4.3:364360-364379 None:intergenic 30.0%
! GTTTTCATCTCATACTCATA+CGG + chr4.3:364612-364631 MS.gene046992:intron 30.0%
! TCCTTGTAGTAGTAATTTGT+TGG + chr4.3:364204-364223 MS.gene046992:intron 30.0%
! TGTAGTTGATACTGTTTAAG+TGG - chr4.3:365006-365025 None:intergenic 30.0%
! TTTTCCAAACTTTCTAAGCT+GGG - chr4.3:363506-363525 None:intergenic 30.0%
! TTTTTCCAAACTTTCTAAGC+TGG - chr4.3:363507-363526 None:intergenic 30.0%
!! CCTTGTAGTAGTAATTTGTT+GGG + chr4.3:364205-364224 MS.gene046992:intron 30.0%
!! GTTATAGTTGAAGTGTTGTT+AGG - chr4.3:363146-363165 None:intergenic 30.0%
AACATGGCTGATTATCCATT+CGG + chr4.3:363065-363084 MS.gene046992:CDS 35.0%
AAGTTGAACACACCAAAAAC+TGG + chr4.3:363827-363846 MS.gene046992:CDS 35.0%
ACGGAAGAAACTCAATAAAC+TGG - chr4.3:365183-365202 None:intergenic 35.0%
AGAATCACAAAGCTAGAGAA+AGG + chr4.3:363557-363576 MS.gene046992:CDS 35.0%
CACAGTAACAACTAGACTTA+TGG + chr4.3:364892-364911 MS.gene046992:CDS 35.0%
CAGTAAGTAATGCACAAACT+AGG + chr4.3:364137-364156 MS.gene046992:intron 35.0%
CATAAGTCTAGTTGTTACTG+TGG - chr4.3:364894-364913 None:intergenic 35.0%
CATGATCTCCATTCCTTATT+GGG - chr4.3:365072-365091 None:intergenic 35.0%
CCCAACAAATTACTACTACA+AGG - chr4.3:364208-364227 None:intergenic 35.0%
CCTTATTGGGAAAAGTTGAA+GGG - chr4.3:365059-365078 None:intergenic 35.0%
CTGCTGTTATGAAATTTAGC+TGG + chr4.3:364274-364293 MS.gene046992:intron 35.0%
CTGGAAGAATTGTATAGAAG+AGG + chr4.3:363439-363458 MS.gene046992:CDS 35.0%
GCTCTTGAAAAGAAAGACTT+AGG + chr4.3:363625-363644 MS.gene046992:CDS 35.0%
GGTGAATTGATTAAGGGAAA+AGG - chr4.3:363997-364016 None:intergenic 35.0%
GTAATTCTGCTTCATCGAAT+TGG - chr4.3:364754-364773 None:intergenic 35.0%
TATAATCAGTGCTTAGTGAG+TGG - chr4.3:364059-364078 None:intergenic 35.0%
TCCTTATTGGGAAAAGTTGA+AGG - chr4.3:365060-365079 None:intergenic 35.0%
TGTTGTTAGGAGAAGTAGTA+GGG - chr4.3:363133-363152 None:intergenic 35.0%
TTGTAGTTGTAGTATGTGTG+AGG - chr4.3:364962-364981 None:intergenic 35.0%
! AAGTCAAGTCAGTAGCTTTT+GGG + chr4.3:364324-364343 MS.gene046992:intron 35.0%
! ATGAAATTTAGCTGGGCTTT+TGG + chr4.3:364282-364301 MS.gene046992:intron 35.0%
! CAACTTTTCCCAATAAGGAA+TGG + chr4.3:365061-365080 MS.gene046992:CDS 35.0%
! GAAAAAAAAGGGCATATGCA+CGG - chr4.3:364520-364539 None:intergenic 35.0%
! TGAAATTTAGCTGGGCTTTT+GGG + chr4.3:364283-364302 MS.gene046992:intron 35.0%
!! CATGGGTTTTGATGAGTTTT+GGG - chr4.3:364919-364938 None:intergenic 35.0%
!! TCATGGGTTTTGATGAGTTT+TGG - chr4.3:364920-364939 None:intergenic 35.0%
AATCATTGCCACCATGAATG+CGG - chr4.3:363181-363200 None:intergenic 40.0%
CCAATAAGGAATGGAGATCA+TGG + chr4.3:365070-365089 MS.gene046992:CDS 40.0%
CCATGATCTCCATTCCTTAT+TGG - chr4.3:365073-365092 None:intergenic 40.0%
GAATTATAGACCTCTGCAAG+AGG - chr4.3:363889-363908 None:intergenic 40.0%
TAATAATCCAGCAGCAGTTG+TGG + chr4.3:363375-363394 MS.gene046992:CDS 40.0%
TCTAGTTGTTACTGTGGTTG+TGG - chr4.3:364888-364907 None:intergenic 40.0%
! AAGGAAGGAATGCAGCTTTT+AGG - chr4.3:364244-364263 None:intergenic 40.0%
! ACTGGTACTGGAATTTGTAG+AGG - chr4.3:363857-363876 None:intergenic 40.0%
! CAAGTCAAGTCAGTAGCTTT+TGG + chr4.3:364323-364342 MS.gene046992:intron 40.0%
! CCCTTCAACTTTTCCCAATA+AGG + chr4.3:365056-365075 MS.gene046992:CDS 40.0%
! CTGGTACTGGAATTTGTAGA+GGG - chr4.3:363856-363875 None:intergenic 40.0%
! GAAATTTAGCTGGGCTTTTG+GGG + chr4.3:364284-364303 MS.gene046992:intron 40.0%
! GTGTTGTTAGGAGAAGTAGT+AGG - chr4.3:363134-363153 None:intergenic 40.0%
! TGTTGGATTTGTTCAGCAGA+AGG - chr4.3:363475-363494 None:intergenic 40.0%
!! AGTACTCTAGAACAGATGGA+TGG + chr4.3:364726-364745 MS.gene046992:intron 40.0%
!! GATCAGTACTCTAGAACAGA+TGG + chr4.3:364722-364741 MS.gene046992:intron 40.0%
!! TGCAGTAGAGGTGTTTAAGA+GGG - chr4.3:364846-364865 None:intergenic 40.0%
!! TTGCAGTAGAGGTGTTTAAG+AGG - chr4.3:364847-364866 None:intergenic 40.0%
!!! AAGCAAGGGTTGTCTTGTTT+TGG - chr4.3:364406-364425 None:intergenic 40.0%
ACTGCCCAGCTTAGAAAGTT+TGG + chr4.3:363499-363518 MS.gene046992:CDS 45.0%
AGTTGTTACTGTGGTTGTGG+TGG - chr4.3:364885-364904 None:intergenic 45.0%
ATGGCTGATTATCCATTCGG+TGG + chr4.3:363068-363087 MS.gene046992:CDS 45.0%
CCATGAATGCGGTTTAAGGA+AGG - chr4.3:363170-363189 None:intergenic 45.0%
CCTTCCTTAAACCGCATTCA+TGG + chr4.3:363167-363186 MS.gene046992:CDS 45.0%
CTGCATTCCTTCCTTTCTGT+CGG + chr4.3:364249-364268 MS.gene046992:intron 45.0%
CTTAGTTTCCTTCCACCGAA+TGG - chr4.3:363083-363102 None:intergenic 45.0%
GCTCTTAACTGTTCTGGTGT+TGG - chr4.3:363418-363437 None:intergenic 45.0%
TAACTGCATCATATGCCACG+TGG - chr4.3:364807-364826 None:intergenic 45.0%
TAGGAGAAGTAGTAGGGACT+GGG - chr4.3:363127-363146 None:intergenic 45.0%
TCCAGTGCTCTTAACTGTTC+TGG - chr4.3:363424-363443 None:intergenic 45.0%
TCCTTAAACCGCATTCATGG+TGG + chr4.3:363170-363189 MS.gene046992:CDS 45.0%
TCTCTGTCTCTTTGTGTTGC+TGG - chr4.3:365132-365151 None:intergenic 45.0%
TGAAGGTGGTGAGTTCAACA+TGG + chr4.3:363049-363068 MS.gene046992:CDS 45.0%
TGCAAGAGGAAGACTAGTAC+TGG - chr4.3:363875-363894 None:intergenic 45.0%
TGCATTCCTTCCTTTCTGTC+GGG + chr4.3:364250-364269 MS.gene046992:intron 45.0%
TTAGGAGAAGTAGTAGGGAC+TGG - chr4.3:363128-363147 None:intergenic 45.0%
TTATGGAAAGGAATGCCACG+TGG + chr4.3:364789-364808 MS.gene046992:CDS 45.0%
! ACCAGAACAGTTAAGAGCAC+TGG + chr4.3:363420-363439 MS.gene046992:CDS 45.0%
! CAGCAGCTGATTCCATTTGA+CGG - chr4.3:363594-363613 None:intergenic 45.0%
! CATTCGGTGGAAGGAAACTA+AGG + chr4.3:363081-363100 MS.gene046992:CDS 45.0%
! CTGATTATCCATTCGGTGGA+AGG + chr4.3:363072-363091 MS.gene046992:CDS 45.0%
! TAAGCTGGGCAGTGATTTGT+TGG - chr4.3:363492-363511 None:intergenic 45.0%
! TGTAGAGGGTAGCCAGTTTT+TGG - chr4.3:363842-363861 None:intergenic 45.0%
! TTTTGTCAACAGGCGCAAGT+AGG + chr4.3:363794-363813 MS.gene046992:intron 45.0%
!! AGGAAGACTAGTACTGGTAC+TGG - chr4.3:363869-363888 None:intergenic 45.0%
!! ATGGTGGGTTACAATGAAGG+TGG + chr4.3:363035-363054 MS.gene046992:CDS 45.0%
!! GTAGAGGTGTTTAAGAGGGT+AGG - chr4.3:364842-364861 None:intergenic 45.0%
!! TACTAGTCTTCCTCTTGCAG+AGG + chr4.3:363876-363895 MS.gene046992:CDS 45.0%
!! TGGATGGTGGGTTACAATGA+AGG + chr4.3:363032-363051 MS.gene046992:CDS 45.0%
!!! CAAGGGTTGTCTTGTTTTGG+TGG - chr4.3:364403-364422 None:intergenic 45.0%
!! GTATTATATAATATAATATA+TGG + chr4.3:363237-363256 MS.gene046992:intron 5.0%
CAGCAGTTGTGGTGAGTTCA+AGG + chr4.3:363386-363405 MS.gene046992:CDS 50.0%
CAGTTGTGGTGAGTTCAAGG+TGG + chr4.3:363389-363408 MS.gene046992:CDS 50.0%
CATCACAATCTGCAGCAGCA+AGG + chr4.3:363215-363234 MS.gene046992:CDS 50.0%
GCAAAAACGACGCCGTCAAA+TGG + chr4.3:363579-363598 MS.gene046992:CDS 50.0%
GCATTCCTTCCTTTCTGTCG+GGG + chr4.3:364251-364270 MS.gene046992:intron 50.0%
GCCACCATGAATGCGGTTTA+AGG - chr4.3:363174-363193 None:intergenic 50.0%
GCTAGCTGTTGTTGCAGTAG+AGG - chr4.3:364858-364877 None:intergenic 50.0%
TACTGCAACAACAGCTAGCG+TGG + chr4.3:364859-364878 MS.gene046992:CDS 50.0%
GAACTCACCACAACTGCTGC+TGG - chr4.3:363385-363404 None:intergenic 55.0%
GAAGTAGTAGGGACTGGGAC+TGG - chr4.3:363122-363141 None:intergenic 55.0%
TAACAGCAGCCCCGACAGAA+AGG - chr4.3:364263-364282 None:intergenic 55.0%
AGCAGCCCCGACAGAAAGGA+AGG - chr4.3:364259-364278 None:intergenic 60.0%
!! GGGACTGGTCTTGGCATGAG+AGG - chr4.3:363107-363126 None:intergenic 60.0%
!! GTAGGGACTGGGACTGGTCT+TGG - chr4.3:363116-363135 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 363029 365213 363029 ID=MS.gene046992
chr4.3 mRNA 363029 365213 363029 ID=MS.gene046992.t1;Parent=MS.gene046992
chr4.3 exon 363029 363236 363029 ID=MS.gene046992.t1.exon1;Parent=MS.gene046992.t1
chr4.3 CDS 363029 363236 363029 ID=cds.MS.gene046992.t1;Parent=MS.gene046992.t1
chr4.3 exon 363347 363646 363347 ID=MS.gene046992.t1.exon2;Parent=MS.gene046992.t1
chr4.3 CDS 363347 363646 363347 ID=cds.MS.gene046992.t1;Parent=MS.gene046992.t1
chr4.3 exon 363806 363897 363806 ID=MS.gene046992.t1.exon3;Parent=MS.gene046992.t1
chr4.3 CDS 363806 363897 363806 ID=cds.MS.gene046992.t1;Parent=MS.gene046992.t1
chr4.3 exon 364728 365213 364728 ID=MS.gene046992.t1.exon4;Parent=MS.gene046992.t1
chr4.3 CDS 364728 365213 364728 ID=cds.MS.gene046992.t1;Parent=MS.gene046992.t1
Gene Sequence

>MS.gene046992

ATGTGGATGGTGGGTTACAATGAAGGTGGTGAGTTCAACATGGCTGATTATCCATTCGGTGGAAGGAAACTAAGGCCTCTCATGCCAAGACCAGTCCCAGTCCCTACTACTTCTCCTAACAACACTTCAACTATAACTCCTTCCTTAAACCGCATTCATGGTGGCAATGATTTATTTTCACAATATCATCACAATCTGCAGCAGCAAGGTATTATATAATATAATATATGGCTTGCTAATTAACTCTTTTCTGTCCAATATTGTTTGTATATATGTTACACTTACTAAAAGTGTGATGATATGTTTTATCATGAGTAGGAGATCATAGCAAGAGATCAGAGTTGAATAATAATCCAGCAGCAGTTGTGGTGAGTTCAAGGTGGAATCCAACACCAGAACAGTTAAGAGCACTGGAAGAATTGTATAGAAGAGGAACAAGAACACCTTCTGCTGAACAAATCCAACAAATCACTGCCCAGCTTAGAAAGTTTGGAAAAATTGAAGGCAAAAATGTTTTCTATTGGTTTCAGAATCACAAAGCTAGAGAAAGGCAAAAACGACGCCGTCAAATGGAATCAGCTGCTGAGTTTGATTCTGCTCTTGAAAAGAAAGACTTAGGTAATTAATAGTTAACTGTAATTATTTAGTGTTAGAGGAATATCCTTATTAGTACATACTACATACATGACATGGTGTGTTGCTTTTTCTCATTCATTCGTATTGTTGTTGGCTGAGATGTAAAGTTATATTCTTTTTTGTTTTTCTTTTTGTCAACAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCCTCTACAAATTCCAGTACCAGTACTAGTCTTCCTCTTGCAGAGGTCTATAATTCTCTCTCTAATATTATATTAATATCTTGCTTTGCTTTCATTCATCATCATGCATGTACTAAACCAGACAAATACATATCTCTTTTTCCTTTTCCCTTAATCAATTCACCAAAAAGTCTTTAAGGAATAATAATCATAAGGATCTTTATCCACTCACTAAGCACTGATTATATGCATATGATTACTTTACTAGAGAGAGATTAGATAACTAAAAAGTTACTACTTATATGCAGTAAGTAATGCACAAACTAGGTATAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGTTTCCTTGTAGTAGTAATTTGTTGGGAAATGAAAAGGGTCCTAAAAGCTGCATTCCTTCCTTTCTGTCGGGGCTGCTGTTATGAAATTTAGCTGGGCTTTTGGGGCTTGTGCATATTCATTCAAGTCAAGTCAGTAGCTTTTGGGCACTCTTCTACCTATCTCCATTATTCTTCTTTCTATGAAATGAAATTGAGAGACCACCAAAACAAGACAACCCTTGCTTTAATTTGACTTCACATAGACCAACATCCACCTTTTTTTATTTTATTTTATTTTATTTTTCTTTTAACTTTGAGTGCATGCTCATTTGAAATCCGTGCATATGCCCTTTTTTTTCTTTTCTTACCTATGGTTAGTTTTTGTTTTTTCCTTTTTCCTCACACGTTATTTAGTATTTTTTTGAGTTGAGGTTTTCATCTCATACTCATACGGTACCTTTAATTAAATTCTTTCTTTCTTTCTTTCTTTCTACAGGAATCTGTTTCAATTCAAAGGGCAGCAGCAGCAGCAGCAAAAGCAGATCAGTACTCTAGAACAGATGGATGGCTCCAATTCGATGAAGCAGAATTACAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTTCTTCTTGTCCTACCCTCTTAAACACCTCTACTGCAACAACAGCTAGCGTGGCCACCACAACCACAGTAACAACTAGACTTATGGACCCAAAACTCATCAAAACCCATGATTTCAACTTATTCATTTCACCTCACACATACTACAACTACAAAGAAAGGGAAAACGCTTTTATCCACTTAAACAGTATCAACTACAATAGTACTCATCAAAATGAATCTGATCAAACCCTTCAACTTTTCCCAATAAGGAATGGAGATCATGGATGCACTAATGATGATCATCATCATAACATCATTAACCAGCAACACAAAGAGACAGAGATATCAGCTTCAGCAATCAATGCACCCAACCAGTTTATTGAGTTTCTTCCGTTGAAAAACTGA
Protein sequence

>MS.gene046992.t1

MWMVGYNEGGEFNMADYPFGGRKLRPLMPRPVPVPTTSPNNTSTITPSLNRIHGGNDLFSQYHHNLQQQGDHSKRSELNNNPAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEFDSALEKKDLGASRTVFEVEHTKNWLPSTNSSTSTSLPLAEYSRTDGWLQFDEAELQQRRNFMERNATWHMMQLTSSCPTLLNTSTATTASVATTTTVTTRLMDPKLIKTHDFNLFISPHTYYNYKERENAFIHLNSINYNSTHQNESDQTLQLFPIRNGDHGCTNDDHHHNIINQQHKETEISASAINAPNQFIEFLPLKN