AlfalfaGEDB | MS.gene047064

M. sativa cultivar XinJiangDaYe / MS.gene047064

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004601 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016209 GO:0016301 GO:0016310 GO:0016491 GO:0016684 GO:0016740 GO:0016772 GO:0016773 GO:0016999 GO:0017001 GO:0017076 GO:0017144 GO:0019538 GO:0020037 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042737 GO:0042743 GO:0042744 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:0072593 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00141.26 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047064.t1	XP_003593190.2	96.4	419	15	0	243	661	16	434	7.60E-202	713.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047064.t1	P22196	81.3	251	38	1	1	242	69	319	1.8e-114	414.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047064.t1	A0A396J2P3	96.4	419	15	0	243	661	16	434	5.5e-202	713.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047064.t1	MTR_2g008740	96.163	417	16	0	246	662	1	417	0.0	837
MS.gene047064.t1	MTR_2g008710	91.235	251	13	1	1	242	64	314	5.78e-156	452
MS.gene047064.t1	MTR_2g008730	92.241	232	9	1	20	242	59	290	9.69e-142	416
MS.gene047064.t1	MTR_4g114210	60.317	252	90	2	1	242	58	309	3.90e-103	317
MS.gene047064.t1	MTR_8g107470	42.368	321	179	4	328	648	346	660	3.82e-78	262
MS.gene047064.t1	MTR_1g110280	37.817	394	232	6	272	657	276	664	1.75e-75	255
MS.gene047064.t1	MTR_4g113100	43.648	307	165	5	330	634	319	619	4.02e-74	251
MS.gene047064.t1	MTR_3g093710	38.592	355	200	6	282	633	276	615	8.51e-74	250
MS.gene047064.t1	MTR_1g061590	38.906	329	185	4	341	654	346	673	1.08e-73	251
MS.gene047064.t1	MTR_3g062500	41.562	320	177	6	338	655	334	645	6.70e-72	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047064.t1	AT2G41480	63.095	252	83	2	1	242	66	317	6.69e-107	327
MS.gene047064.t1	AT5G64120	63.745	251	77	3	1	242	72	317	7.09e-104	319
MS.gene047064.t1	AT5G39580	61.508	252	82	4	1	242	62	308	3.42e-98	304
MS.gene047064.t1	AT5G64110	58.167	251	94	3	1	242	71	319	1.91e-92	290
MS.gene047064.t1	AT5G64100	59.761	251	88	4	1	242	74	320	2.47e-91	287
MS.gene047064.t1	AT2G26730	42.453	318	172	5	328	644	320	627	3.44e-75	254
MS.gene047064.t1	AT4G25980	47.012	251	122	3	1	240	63	313	9.17e-73	238
MS.gene047064.t1	AT2G36570	39.818	329	180	5	322	633	319	646	1.24e-71	245
MS.gene047064.t1	AT4G31250	36.709	395	217	6	272	634	249	642	1.63e-70	242
MS.gene047064.t1	AT1G68400	37.500	384	216	8	264	633	264	637	8.51e-70	240

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Find 138 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAAGTTTGCAGCAAA+AGG	0.437277	2.3:-73928795	MS.gene047064:CDS
AAACCTCTTAAACCAAGGTT+TGG	0.364260	2.3:+73929732	None:intergenic
AAAGATACTTGGGTATAAGA+GGG	0.651176	2.3:-73928368	MS.gene047064:CDS
AACAGAATTGCATTGGATAC+TGG	0.369034	2.3:-73928501	MS.gene047064:CDS
AACCTCTTTACAACAATGGT+AGG	0.620331	2.3:+73927274	None:intergenic
AACGGAATCACGAGCAGCAA+GGG	0.540446	2.3:+73929662	None:intergenic
AAGACTTCAAATTTCCATGA+GGG	0.585520	2.3:+73926580	None:intergenic
AAGAGGATAGAGATAGGAGA+AGG	0.471995	2.3:-73927448	MS.gene047064:CDS
AAGCTCAACAGAATAGTCAA+AGG	0.628071	2.3:-73927523	MS.gene047064:CDS
AATCACGAGCAGCAAGGGCA+AGG	0.566827	2.3:+73929667	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAAGTTTGCAGCAAA+AGG	-	chr2.3:73926959-73926978	MS.gene047064:intron	30.0%
AAAGATACTTGGGTATAAGA+GGG	-	chr2.3:73927386-73927405	MS.gene047064:CDS	30.0%
AAGACTTCAAATTTCCATGA+GGG	+	chr2.3:73929177-73929196	None:intergenic	30.0%
AATCTTGAGTTCCAATTGAA+TGG	+	chr2.3:73929085-73929104	None:intergenic	30.0%
AATTGTCAATGTATCTAAGG+AGG	-	chr2.3:73926505-73926524	MS.gene047064:CDS	30.0%
AGACTTAAAACCATTCACTA+AGG	-	chr2.3:73928506-73928525	MS.gene047064:CDS	30.0%
ATTGGAGATGAAAGATAGAT+AGG	-	chr2.3:73929718-73929737	MS.gene047064:CDS	30.0%
CTAGTTTGAAGACAATAACA+AGG	+	chr2.3:73927891-73927910	None:intergenic	30.0%
GACATTTGTACAAAGATACT+TGG	-	chr2.3:73927375-73927394	MS.gene047064:CDS	30.0%
GCAATTGTGAAAGAAATGAA+GGG	+	chr2.3:73927201-73927220	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	73925941	73929835	73925941	ID=MS.gene047064
chr2.3	mRNA	73925941	73929835	73925941	ID=MS.gene047064.t1;Parent=MS.gene047064
chr2.3	exon	73929656	73929835	73929656	ID=MS.gene047064.t1.exon1;Parent=MS.gene047064.t1
chr2.3	CDS	73929656	73929835	73929656	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1
chr2.3	exon	73928763	73928925	73928763	ID=MS.gene047064.t1.exon2;Parent=MS.gene047064.t1
chr2.3	CDS	73928763	73928925	73928763	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1
chr2.3	exon	73928286	73928669	73928286	ID=MS.gene047064.t1.exon3;Parent=MS.gene047064.t1
chr2.3	CDS	73928286	73928669	73928286	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1
chr2.3	exon	73927104	73927709	73927104	ID=MS.gene047064.t1.exon4;Parent=MS.gene047064.t1
chr2.3	CDS	73927104	73927709	73927104	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1
chr2.3	exon	73926076	73926717	73926076	ID=MS.gene047064.t1.exon5;Parent=MS.gene047064.t1
chr2.3	CDS	73926076	73926717	73926076	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1
chr2.3	exon	73925941	73925963	73925941	ID=MS.gene047064.t1.exon6;Parent=MS.gene047064.t1
chr2.3	CDS	73925941	73925963	73925941	ID=cds.MS.gene047064.t1;Parent=MS.gene047064.t1

Gene Sequence

>MS.gene047064

ATGCACTTTCATGATTGTTTTGTCCAAGGTTGTGACGCTTCTGTTCTCATTGCCGGTCCTGGCACTGAGAGAACAGCATTTCCAAACCTTGGTTTAAGAGGTTTTGAAGTTATTGATGATGCTAAGACAAAACTCGAGGCTGATATCCTTGCCCTTGCTGCTCGTGATTCCGTTGTTCTGGTAATTATCTAAGTTAACTATATATTGTACAAATGATAGTAAAGGAGATACTGCTAGAAAATGTTGAATTAGTTACACAAATATAAATTTTATGTTCATGGAATTTAGTCATTAATCTATTATAGAACCATCAAAATTATAGATCAATATTCATTTTATGATACTTGAAATTTTACTGAAATGAATGTTGAGTTTTATTAGTACATTTTATGATACTCTTATTTTATTTTTACTGAAATGAATGTTGATTTGTATTAGTATATTTTATGAATACAAAACAAGCGGTCACTTGGTATCAAAAATTATGTAACAAAGAATATGTATATTATAGTACCTTGGTATCAAAGGAGGTTAAAAACTGCCACAAAACAAGCAAAAAAAAAAAATTGTCAATGTATCTAAGGAGGTTAAAAACCCCCACAAAACAAAACACAAATATTGCGGCGGTTTTAGATCAGAATACCAGCGGTCACTAAAAACCCCCGCAGATAATTTGTGGGATTAGTATATGCGGGGGTTTTCAAAAATCCCGCAAAACAATCCGCGGAGGTTAAAAACCCCCGCAAAATAGCTTAAAAACCGCCGCAATCTAGGCGCGTTTTTTGTAGTGTATAGAACCATCAAAATTATAGATCAATATTCATTTTTTTTTATATGAATAATTCAACTTTTCTAATAAGTTCATAATTTGTTGAAATGTGGACCTAATTGATTTATGTATGCATTGTAGAGTGGCGGTCTTAGTTGGCAAGTTCCTACTGGGCGCAGAGACGGACGCGTGTCACAGGCTTCTGATGTCAATAACTTGCCTGCTCCTAGCGATTCTGTTGATGTCCAGAAACAAAAGTTTGCAGCAAAAGGCCTTAACACTCAAGATCTTGTCACCTTAGATGGTTAGTGATCTAAATATTTTCAAAATTTATTTACCACTCTAGAATTACATATTGAAGTTGCATTCACATTAATATTCAATGAATATATCATAGGTGGACATACAATTGGTACAACAGCATGTCAATTCTTCAGCAACAGATTGAGAAACTTCACTACAAATGGTGCAGCTGACCCTTCAATAGACCCTTCATTTCTTTCACAATTGCAAACACTATGCCCTCAAAACAGTGGTGCTACAAACAGAATTGCATTGGATACTGGAAGTCAAAACAAATTTGATAATTCTTACTATGCTAATCTGAGAAACGGACGCGGAATTCTTCAATCTGATCAAGAATTGTGGAATGATGCTTCCACAAAGACATTTGTACAAAGATACTTGGGTATAAGAGGGTTACTTGGATTAAGATTTAATGTTGAATTTGGAAAATCAATGGTGAAGATGAGCAACATTGGAGTGAAGACCGGTGTTGATGGTGAAATTCGCAAGATATGTTCTGCTTTCAACTAAGTGCATATGTGGTTTTATTGATTTGTTTGTATGGTTGGAATGTTTGCCATTGATTTAAGTGTACAATATTTACTTATAGTTTGTTTTTGTTTTCTCTTTTTATTTTTGTTGACCAAACTAAAAATGTTGAAAGTGTAAAATTATTAAAAGAAAAGTGTGATATGTATTATATACTAATAATACAAACAAATTTTTCACTGGCCGTCCAGACTGAAAAACATAGCAAGAAGAATCCAACCTTTTTCAAGTTCATATACAGCTTTACACGACATGTCCAAGGTTGTTTTTGTATCAAACTATGTAGTAAATCACATCATGTCATATATCTTATTATTCTGAAAAGAATATCAATAGGTAGATGCCCTTGTTATTGTCTTCAAACTAGGAGTGACTAATTAGGTATATTGAAATGAAGATAGAAATGAGTCTCATGATTCATTTTCACTACTAAATTTTCTATGTCATAGCTACAATACTTCTTTCAATCTCAACTTCATAATGAGGTTTCCCCTTTTTGTTCTTCAACTTGTTGCTTTTTCAGTTCTTGCAATGGCTCAAGAAGGACCTAAAGGGGATAGTGAAGTCCAAAATAAATCTTCGGACGATAAAAACAACAACAATTCCAATCTTTTATTATTAATACTCAACGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTATAACACATCAAAAAAGCTCAACAGAATAGTCAAAGGACACATTAACACATTTCATGAACAAGAGAAAGATGTTGAAACAAGTATTGAGAAGAGGATAGAGATAGGAGAAGGGACAACGATGATGGCGGTAGAAGAGAGAAAGGAGTTAATGTTCTTTAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGTCATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTACCATTGTTGTAAAGAGGTTAAGAGACTTAAAACCATTCACTAAGGAGGAATTTGCAAAGATAGTGAAAATGATTGCTGATCTTAAACACCCTAATTTGTTGCCTTTGCTTGCTTACTATCATTCCAGAGATGAGAAGCTAATGCTCTATAGATATGCACAGAATGGAAACCTTTTCTCACGACTTCATGGTAATTTACATCAACTTGCTCCTTTTTTTCATTCTGAATCTGTACATTAGTTTCAAGAAAACATATATAAGTTGAGTTTTGCGACACTAATATTTTCCTTATTTTTTATTGAACCGACATCGATTGGGTCGCAGTATCAGTTGTAAGGACGGGCAATACCATGAGCTTTTAGCTTATACTAATTGGTGTTAAAGTGTCAAACAATTTTCAAGCAAAATGTTTTCTTTGATCAAAGTATAAAGAAAACTTGCATGTTAAAGTTTTACATAGTCTTAACATAGGTTTTCATGCTAAATTCACAATCATATATGACAATAATGTATAGTTACAAAGGGATTTTTGTCACAATAATGAATTAGTAACCAAATTGTGCATGACTTTATCAGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGCGTGGCTCGAGCCCTAGAATACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATTTGAAGTCTTCAAATGTACTATTTGATGAAAATGATTCAGTTTTTGTATCCGACTTTAGCCTTGCCGCGTTAATAGCACAACCAATAGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGTTATGGATCACTTTTAATAGAACTTGTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAAATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGTATTGAAAGGTTCCCAGAGAAACGTCCTGAGATGAAAGAGGTTGTTAGAGAAGTGGAGAAAATACAACAGGTACACTTGATGTCAGAAGATGAGGATGATGTGTCTTGTGATGTGTCTCTAACTGATGATTCCTGTTCAACTAGTAACTCAGGGATGTTTATTGGAGATGAAAGATAGATAGGTTGTTAGATAGATTATCAAATTAAGGTTGGATGCCTAAACCTATAACATGTTCTTTTTGTTTTTGATATCAGGGTACAGTGCACCAAAAGAATAA

Protein sequence

>MS.gene047064.t1

MHFHDCFVQGCDASVLIAGPGTERTAFPNLGLRGFEVIDDAKTKLEADILALAARDSVVLSGGLSWQVPTGRRDGRVSQASDVNNLPAPSDSVDVQKQKFAAKGLNTQDLVTLDGGHTIGTTACQFFSNRLRNFTTNGAADPSIDPSFLSQLQTLCPQNSGATNRIALDTGSQNKFDNSYYANLRNGRGILQSDQELWNDASTKTFVQRYLGIRGLLGLRFNVEFGKSMVKMSNIGVKTGVDVLAMAQEGPKGDSEVQNKSSDDKNNNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINTFHEQEKDVETSIEKRIEIGEGTTMMAVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPTIVVKRLRDLKPFTKEEFAKIVKMIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVFVSDFSLAALIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELVTGKVSMCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDVSLTDDSCSTRYSAPKE