AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047105

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047105.t1 MTR_2g008030 98.538 342 5 0 1 342 1 342 0.0 696
MS.gene047105.t1 MTR_6g035305 84.776 335 51 0 1 335 1 335 0.0 601
MS.gene047105.t1 MTR_7g066120 50.585 342 151 2 11 335 71 411 1.52e-116 343
MS.gene047105.t1 MTR_0776s0010 40.729 329 187 5 7 328 284 611 4.65e-84 278
MS.gene047105.t1 MTR_4g093620 42.258 310 156 6 32 331 87 383 7.81e-76 239
MS.gene047105.t1 MTR_3g070100 30.961 281 173 8 67 342 116 380 5.27e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047105.t1 AT1G43670 80.826 339 65 0 1 339 1 339 0.0 584
MS.gene047105.t1 AT3G54050 50.588 340 152 3 11 335 79 417 1.80e-116 343
MS.gene047105.t1 AT3G54050 50.588 340 152 3 11 335 79 417 1.80e-116 343
MS.gene047105.t1 AT5G64380 40.881 318 168 8 32 339 89 396 6.92e-74 234
MS.gene047105.t1 AT3G55800 31.449 283 161 10 67 338 123 383 4.51e-23 99.4

Find 69 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCAATCACATTGTTCT+TGG 0.178736 2.3:+74429430 MS.gene047105:CDS
GAATAAATCTTTCCTTTCTT+TGG 0.198088 2.3:-74431517 None:intergenic
CACTATTGCATATAGATCTT+TGG 0.249832 2.3:+74431024 MS.gene047105:intron
ACTGACTTGCCACGCTGTGC+TGG 0.263816 2.3:-74430760 None:intergenic
CTTACCTTAGCTTTCCATTT+GGG 0.275310 2.3:-74431917 None:intergenic
CATAGTTGTGTTTGATCCTT+TGG 0.288689 2.3:+74430871 MS.gene047105:CDS
CCAAAGTCTCTTAGGTATAT+TGG 0.298619 2.3:+74431734 MS.gene047105:CDS
TATGCAGAATCCAAAGAAAA+TGG 0.326692 2.3:+74432704 MS.gene047105:CDS
TGTGCGTCCGCTGCTGATTA+AGG 0.328499 2.3:-74430558 None:intergenic
ATTGATTGTGGAGTTTCAAT+AGG 0.341565 2.3:+74430908 MS.gene047105:CDS
CACCATATAGCAATGTTCTA+TGG 0.354552 2.3:-74431863 None:intergenic
TCTTACCTTAGCTTTCCATT+TGG 0.373307 2.3:-74431918 None:intergenic
GTTCACCACCAAAGTCTCTT+AGG 0.374034 2.3:+74431726 MS.gene047105:CDS
CTGACTTGCCACGCTGTGCT+GGG 0.376754 2.3:-74430759 None:intergenic
TCGTAGCTTCCAAGGAATAT+TGG 0.381749 2.3:-74432656 None:intergenic
GTCCATAGAACATTGCTATA+TGG 0.388889 2.3:+74431861 MS.gene047105:CDS
AATGCATGTACCTTGATGTT+TGG 0.391145 2.3:-74431390 None:intergenic
TTTGTGCTTAGCACAGGAAA+TGG 0.404030 2.3:+74431315 MS.gene047105:CDS
ATGCATGTACCTTGATGTTT+GGG 0.428381 2.3:-74431389 None:intergenic
TTTACACTTGATCCTTCCCT+TGG 0.433839 2.3:+74431348 MS.gene047105:CDS
AAAGATTTATTCTGTGAATG+AGG 0.439092 2.3:+74431528 MS.gene047105:CDS
CCAATATACCTAAGAGACTT+TGG 0.448075 2.3:-74431734 None:intergenic
ATTGCAACCTGGTAGCAGTT+TGG 0.453203 2.3:+74431092 MS.gene047105:CDS
GCAGCTGGTTACTGCATGTA+TGG 0.456073 2.3:+74431117 MS.gene047105:CDS
CTGATTTGATGACAATAACT+AGG 0.457076 2.3:+74429353 MS.gene047105:CDS
AGCACAGGAAATGGAGTGAA+TGG 0.467256 2.3:+74431324 MS.gene047105:CDS
AACAAAACTCACTTGAACAT+TGG 0.470224 2.3:-74429632 None:intergenic
AACTCCACAATCAATGTTTG+AGG 0.474075 2.3:-74430900 None:intergenic
TGACTTGCCACGCTGTGCTG+GGG 0.480596 2.3:-74430758 None:intergenic
GATCGATCGCCAATATTCCT+TGG 0.483711 2.3:+74432647 MS.gene047105:CDS
GCTGATAAGAAAAGCCCAAA+TGG 0.486498 2.3:+74431903 MS.gene047105:CDS
TGGTGTCTCCAGCAAGTCCT+AGG 0.492171 2.3:-74429612 None:intergenic
TCCAAAACTTACTTGGCCGT+TGG 0.497852 2.3:-74431574 None:intergenic
AAGATTTATTCTGTGAATGA+GGG 0.501287 2.3:+74431529 MS.gene047105:CDS
GGTAGCAGTTTGGTAGCAGC+TGG 0.501393 2.3:+74431102 MS.gene047105:CDS
TTGCAGTTTGTGCTTAGCAC+AGG 0.508953 2.3:+74431309 MS.gene047105:intron
GTGCCTTCTTGTTTCAGAAG+AGG 0.512489 2.3:+74430714 MS.gene047105:intron
CAGTTCTGTTAGCATCTGCT+TGG 0.515272 2.3:-74429333 None:intergenic
TTCTAATGAAGTATTTGTGA+AGG 0.533564 2.3:+74430535 MS.gene047105:CDS
GTTGTGTTTGATCCTTTGGA+TGG 0.544716 2.3:+74430875 MS.gene047105:CDS
CAATTTCATCGTAGCTTCCA+AGG 0.546062 2.3:-74432664 None:intergenic
GACTTGCCACGCTGTGCTGG+GGG 0.552070 2.3:-74430757 None:intergenic
TGCTCCATCAAATATGACAT+TGG 0.555129 2.3:-74432298 None:intergenic
GGTTCCTCAAACATTGATTG+TGG 0.568496 2.3:+74430896 MS.gene047105:CDS
AACAATGTGATTGATGAGAA+TGG 0.568531 2.3:-74429425 None:intergenic
TCATATTTGATGGAGCAAGC+AGG 0.570588 2.3:+74432304 MS.gene047105:CDS
GAGTCAATATGAACTCTCCA+AGG 0.570901 2.3:-74431365 None:intergenic
TGTTTGTTCTTCTGTTAACA+AGG 0.573073 2.3:+74429462 MS.gene047105:CDS
ACTTCATAGATACCAAAGAA+AGG 0.574423 2.3:+74431505 MS.gene047105:intron
AGCTTTCACAGGAAAACAAA+GGG 0.576524 2.3:+74432333 MS.gene047105:CDS
GCAGGAGGTCAAGCTTTCAC+AGG 0.578987 2.3:+74432322 MS.gene047105:CDS
GCTGCTACCAAACTGCTACC+AGG 0.581274 2.3:-74431099 None:intergenic
AGTCTCTTAGGTATATTGGC+AGG 0.582669 2.3:+74431738 MS.gene047105:CDS
CAACCTCTTCTGAAACAAGA+AGG 0.591219 2.3:-74430717 None:intergenic
CATGTATGGAAGCTCTTGCA+CGG 0.591600 2.3:+74431131 MS.gene047105:CDS
AAAGCCCAAATGGAAAGCTA+AGG 0.593648 2.3:+74431913 MS.gene047105:CDS
TTTGGTGGTGAACTGTCTTG+TGG 0.594367 2.3:-74431716 None:intergenic
GTTGAAGATGCATTGCAACC+TGG 0.599461 2.3:+74431081 MS.gene047105:CDS
ATTGACTCACCCAAACATCA+AGG 0.604776 2.3:+74431380 MS.gene047105:CDS
CATAGAACATTGCTATATGG+TGG 0.610102 2.3:+74431864 MS.gene047105:CDS
AATATGAACTCTCCAAGGGA+AGG 0.611205 2.3:-74431360 None:intergenic
AAGCTTTCACAGGAAAACAA+AGG 0.624169 2.3:+74432332 MS.gene047105:CDS
GTGAAGGCCTTAATCAGCAG+CGG 0.626415 2.3:+74430551 MS.gene047105:CDS
TAGCAATGTTCTATGGACAT+CGG 0.638052 2.3:-74431856 None:intergenic
ATATACCTAAGAGACTTTGG+TGG 0.639800 2.3:-74431731 None:intergenic
AGTCAATATGAACTCTCCAA+GGG 0.668311 2.3:-74431364 None:intergenic
ATGTTTGAGGAACCATCCAA+AGG 0.670132 2.3:-74430887 None:intergenic
TCAAAGTATGCTGAATCACG+TGG 0.673339 2.3:+74429394 MS.gene047105:CDS
TATTTGATGGAGCAAGCAGG+AGG 0.695622 2.3:+74432307 MS.gene047105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAACATTCAATTAA+TGG - chr2.3:74429561-74429580 None:intergenic 10.0%
!! TAAATTAACATAAAGTTATT+AGG + chr2.3:74431435-74431454 MS.gene047105:intron 10.0%
!! TTTATTTAATATGAGTTTAA+TGG + chr2.3:74429791-74429810 MS.gene047105:intron 10.0%
!!! TTGATAAATATAGAATATTT+TGG - chr2.3:74430787-74430806 None:intergenic 10.0%
!! AATATTATTTCAGATTTAGA+TGG - chr2.3:74429753-74429772 None:intergenic 15.0%
!! ATAATATTACATGGATATAA+AGG - chr2.3:74429979-74429998 None:intergenic 15.0%
!! ATGTTTAAACTAATAACTTA+TGG + chr2.3:74432229-74432248 MS.gene047105:intron 15.0%
!! GTTGAAAATATAATATTACA+TGG - chr2.3:74429988-74430007 None:intergenic 15.0%
!!! TAATTCATATGCATTTTATT+TGG + chr2.3:74430644-74430663 MS.gene047105:intron 15.0%
!!! TTATAATTTTTTTTACTGAC+AGG + chr2.3:74429573-74429592 MS.gene047105:intron 15.0%
!! AAATTTGACTGTAAATTATC+AGG + chr2.3:74432257-74432276 MS.gene047105:intron 20.0%
!! AATAAAATGAAGAAACTTGA+AGG - chr2.3:74431803-74431822 None:intergenic 20.0%
!! AATTTGACTGTAAATTATCA+GGG + chr2.3:74432258-74432277 MS.gene047105:intron 20.0%
!! ACGATTAAATAACTGATATA+AGG - chr2.3:74432535-74432554 None:intergenic 20.0%
!! CCAAATATTATAAGTTTCTA+CGG - chr2.3:74430386-74430405 None:intergenic 20.0%
!! TAACATTCTATTAGCATAAT+CGG - chr2.3:74431168-74431187 None:intergenic 20.0%
!! TAGAAATTAGTACTAAGATA+TGG - chr2.3:74429872-74429891 None:intergenic 20.0%
!!! AAATCGAATTTAAAGCTAAT+TGG - chr2.3:74430101-74430120 None:intergenic 20.0%
!!! AAATTGCATTTTACTAAATC+AGG - chr2.3:74430682-74430701 None:intergenic 20.0%
!!! AAGGAATTCAAGTATTTTAA+AGG - chr2.3:74430180-74430199 None:intergenic 20.0%
!!! AAGTTATTAGGTTTTTACTT+AGG + chr2.3:74431447-74431466 MS.gene047105:intron 20.0%
!!! AGGAATTCAAGTATTTTAAA+GGG - chr2.3:74430179-74430198 None:intergenic 20.0%
!!! GCTTTATTTTGTTTTTTTGT+TGG + chr2.3:74430603-74430622 MS.gene047105:intron 20.0%
!!! TAAAATGCAATTTTTTGCTT+TGG + chr2.3:74430689-74430708 MS.gene047105:intron 20.0%
! AAAATATAGCAATCAAGCTT+GGG - chr2.3:74430964-74430983 None:intergenic 25.0%
! AAAGATTTATTCTGTGAATG+AGG + chr2.3:74431528-74431547 MS.gene047105:CDS 25.0%
! AACTTTATGTAGTTTGATCT+TGG + chr2.3:74431773-74431792 MS.gene047105:intron 25.0%
! AAGATTTATTCTGTGAATGA+GGG + chr2.3:74431529-74431548 MS.gene047105:CDS 25.0%
! ACATATCATATAACACAACT+CGG - chr2.3:74432213-74432232 None:intergenic 25.0%
! ACTACATATCCCAATAATTT+AGG - chr2.3:74432129-74432148 None:intergenic 25.0%
! ATAGTGGTGAATAGAAAAAT+AGG - chr2.3:74430481-74430500 None:intergenic 25.0%
! CACGTAACATTCTAAATTAA+AGG - chr2.3:74429672-74429691 None:intergenic 25.0%
! CAGTTATTTAATCGTTGAAT+TGG + chr2.3:74432540-74432559 MS.gene047105:intron 25.0%
! CCGTAGAAACTTATAATATT+TGG + chr2.3:74430383-74430402 MS.gene047105:intron 25.0%
! GAATAAATCTTTCCTTTCTT+TGG - chr2.3:74431520-74431539 None:intergenic 25.0%
! GGATGTTGATGTAAAAATAA+TGG - chr2.3:74429829-74429848 None:intergenic 25.0%
! TAAAATATAGCAATCAAGCT+TGG - chr2.3:74430965-74430984 None:intergenic 25.0%
! TAGTGGTGAATAGAAAAATA+GGG - chr2.3:74430480-74430499 None:intergenic 25.0%
! TCACACAAAAAAGATTTAGA+TGG - chr2.3:74429722-74429741 None:intergenic 25.0%
! TTCTATTCACCACTATTTAA+GGG + chr2.3:74430485-74430504 MS.gene047105:intron 25.0%
! TTTCTATTCACCACTATTTA+AGG + chr2.3:74430484-74430503 MS.gene047105:intron 25.0%
!! AATTCAGATTCCTTTTCTAT+CGG - chr2.3:74432028-74432047 None:intergenic 25.0%
!! GATGTGTATTGAATTTTCAT+TGG + chr2.3:74429912-74429931 MS.gene047105:intron 25.0%
!! GTATTGAATTTTCATTGGAT+TGG + chr2.3:74429917-74429936 MS.gene047105:intron 25.0%
!! TTCTAATGAAGTATTTGTGA+AGG + chr2.3:74430535-74430554 MS.gene047105:CDS 25.0%
!! TTTTCCAATGTCATATTTGA+TGG + chr2.3:74432294-74432313 MS.gene047105:CDS 25.0%
!!! ACCTAAGGACATTTTAAAAT+CGG + chr2.3:74432056-74432075 MS.gene047105:intron 25.0%
!!! TCATACGATAATTTTTTTGC+AGG + chr2.3:74432595-74432614 MS.gene047105:intron 25.0%
AAATACTTCCAAAACATGTG+CGG + chr2.3:74430070-74430089 MS.gene047105:intron 30.0%
AAATGATTCTCCGATAGAAA+AGG + chr2.3:74432015-74432034 MS.gene047105:intron 30.0%
AACAAAACTCACTTGAACAT+TGG - chr2.3:74429635-74429654 None:intergenic 30.0%
AACAAAATAAAGCAAACTCG+AGG - chr2.3:74430596-74430615 None:intergenic 30.0%
AACAATGTGATTGATGAGAA+TGG - chr2.3:74429428-74429447 None:intergenic 30.0%
AACTTGATGTAACAGAGATA+AGG + chr2.3:74430140-74430159 MS.gene047105:intron 30.0%
ACAAAATAAAGCAAACTCGA+GGG - chr2.3:74430595-74430614 None:intergenic 30.0%
ACATTTCACAAAGTTTCAAG+AGG + chr2.3:74430430-74430449 MS.gene047105:intron 30.0%
ACTTCATAGATACCAAAGAA+AGG + chr2.3:74431505-74431524 MS.gene047105:intron 30.0%
ATTGATTGTGGAGTTTCAAT+AGG + chr2.3:74430908-74430927 MS.gene047105:CDS 30.0%
CAATTTATTCGATCAGAATC+AGG - chr2.3:74431282-74431301 None:intergenic 30.0%
CACTATTGCATATAGATCTT+TGG + chr2.3:74431024-74431043 MS.gene047105:intron 30.0%
CAGAATTTCCAAAACTTACT+TGG - chr2.3:74431584-74431603 None:intergenic 30.0%
GAAAAATGCACAATACAGTA+TGG + chr2.3:74431830-74431849 MS.gene047105:intron 30.0%
TATGCAGAATCCAAAGAAAA+TGG + chr2.3:74432704-74432723 MS.gene047105:CDS 30.0%
TCATTTGATACTACATCTGA+TGG + chr2.3:74432563-74432582 MS.gene047105:intron 30.0%
TCTATTCACCACTATTTAAG+GGG + chr2.3:74430486-74430505 MS.gene047105:intron 30.0%
TGTTTGTTCTTCTGTTAACA+AGG + chr2.3:74429462-74429481 MS.gene047105:CDS 30.0%
TTAAAATGTCCTTAGGTCTT+GGG - chr2.3:74432053-74432072 None:intergenic 30.0%
TTCATGTTAACTCAAGAATC+AGG - chr2.3:74431627-74431646 None:intergenic 30.0%
TTCTGATCGAATAAATTGCA+CGG + chr2.3:74431284-74431303 MS.gene047105:intron 30.0%
! CTGATTTGATGACAATAACT+AGG + chr2.3:74429353-74429372 MS.gene047105:CDS 30.0%
! GATCGATCATGTATTTTCTT+AGG - chr2.3:74432635-74432654 None:intergenic 30.0%
! TACATCAAGTTTGCTTAAAC+CGG - chr2.3:74430131-74430150 None:intergenic 30.0%
! TTTAAAATGTCCTTAGGTCT+TGG - chr2.3:74432054-74432073 None:intergenic 30.0%
! TTTTCTTTTCTCTAATGCAC+AGG - chr2.3:74430276-74430295 None:intergenic 30.0%
!! ACACATCACTCAGTTTTATA+AGG - chr2.3:74429899-74429918 None:intergenic 30.0%
!! TATGTATGGAGTATTGCAAA+CGG - chr2.3:74432153-74432172 None:intergenic 30.0%
!!! AATTTTTTTTACTGACAGGC+TGG + chr2.3:74429577-74429596 MS.gene047105:intron 30.0%
!!! TCCGATTTTAAAATGTCCTT+AGG - chr2.3:74432060-74432079 None:intergenic 30.0%
AACTCCACAATCAATGTTTG+AGG - chr2.3:74430903-74430922 None:intergenic 35.0%
AAGCTTTCACAGGAAAACAA+AGG + chr2.3:74432332-74432351 MS.gene047105:CDS 35.0%
AATGCATGTACCTTGATGTT+TGG - chr2.3:74431393-74431412 None:intergenic 35.0%
ACATTTGATCTAGCATCCTT+AGG + chr2.3:74431975-74431994 MS.gene047105:intron 35.0%
ACTAAGATATGGAACTAGTG+TGG - chr2.3:74429861-74429880 None:intergenic 35.0%
AGCTTTCACAGGAAAACAAA+GGG + chr2.3:74432333-74432352 MS.gene047105:CDS 35.0%
AGTCAATATGAACTCTCCAA+GGG - chr2.3:74431367-74431386 None:intergenic 35.0%
ATATACCTAAGAGACTTTGG+TGG - chr2.3:74431734-74431753 None:intergenic 35.0%
ATGCATGTACCTTGATGTTT+GGG - chr2.3:74431392-74431411 None:intergenic 35.0%
CACCATATAGCAATGTTCTA+TGG - chr2.3:74431866-74431885 None:intergenic 35.0%
CATAGAACATTGCTATATGG+TGG + chr2.3:74431864-74431883 MS.gene047105:CDS 35.0%
CATAGTTGTGTTTGATCCTT+TGG + chr2.3:74430871-74430890 MS.gene047105:CDS 35.0%
CCAAAGTCTCTTAGGTATAT+TGG + chr2.3:74431734-74431753 MS.gene047105:CDS 35.0%
CCAATATACCTAAGAGACTT+TGG - chr2.3:74431737-74431756 None:intergenic 35.0%
CTATTCACCACTATTTAAGG+GGG + chr2.3:74430487-74430506 MS.gene047105:intron 35.0%
CTCATCAATCACATTGTTCT+TGG + chr2.3:74429430-74429449 MS.gene047105:CDS 35.0%
GCATTATGTTGCAGCTAAAT+TGG + chr2.3:74431408-74431427 MS.gene047105:intron 35.0%
GGTAAGACTGTGATATACTT+TGG + chr2.3:74431934-74431953 MS.gene047105:intron 35.0%
GTCCATAGAACATTGCTATA+TGG + chr2.3:74431861-74431880 MS.gene047105:CDS 35.0%
GTTCGAGGACCTAAATTATT+GGG + chr2.3:74432117-74432136 MS.gene047105:intron 35.0%
TAGCAATGTTCTATGGACAT+CGG - chr2.3:74431859-74431878 None:intergenic 35.0%
TCCATACATAGATGAGAACT+TGG + chr2.3:74432163-74432182 MS.gene047105:intron 35.0%
TGAGTGTGTAATTCACTTCA+AGG - chr2.3:74430199-74430218 None:intergenic 35.0%
TGCTCCATCAAATATGACAT+TGG - chr2.3:74432301-74432320 None:intergenic 35.0%
! CTTACCTTAGCTTTCCATTT+GGG - chr2.3:74431920-74431939 None:intergenic 35.0%
! TCTTACCTTAGCTTTCCATT+TGG - chr2.3:74431921-74431940 None:intergenic 35.0%
!! ATGTATGGAGTATTGCAAAC+GGG - chr2.3:74432152-74432171 None:intergenic 35.0%
AAAGCCCAAATGGAAAGCTA+AGG + chr2.3:74431913-74431932 MS.gene047105:CDS 40.0%
AATATGAACTCTCCAAGGGA+AGG - chr2.3:74431363-74431382 None:intergenic 40.0%
ACGGAAATAGAGACACTTGA+AGG - chr2.3:74430367-74430386 None:intergenic 40.0%
ACTAACTCTCCTAAGACCTA+AGG - chr2.3:74431994-74432013 None:intergenic 40.0%
AGTCTCTTAGGTATATTGGC+AGG + chr2.3:74431738-74431757 MS.gene047105:CDS 40.0%
ATCTAGCATCCTTAGGTCTT+AGG + chr2.3:74431982-74432001 MS.gene047105:intron 40.0%
ATGTTTGAGGAACCATCCAA+AGG - chr2.3:74430890-74430909 None:intergenic 40.0%
CAAAAACTGGGATGAACCAA+CGG + chr2.3:74431558-74431577 MS.gene047105:CDS 40.0%
CAATTTCATCGTAGCTTCCA+AGG - chr2.3:74432667-74432686 None:intergenic 40.0%
CGGAAATAGAGACACTTGAA+GGG - chr2.3:74430366-74430385 None:intergenic 40.0%
GAGTCAATATGAACTCTCCA+AGG - chr2.3:74431368-74431387 None:intergenic 40.0%
GCATCTCTGCATCTTCAATA+TGG + chr2.3:74432438-74432457 MS.gene047105:intron 40.0%
GCCAAGTTCTCATCTATGTA+TGG - chr2.3:74432167-74432186 None:intergenic 40.0%
GCTGATAAGAAAAGCCCAAA+TGG + chr2.3:74431903-74431922 MS.gene047105:CDS 40.0%
GGTTCGAGGACCTAAATTAT+TGG + chr2.3:74432116-74432135 MS.gene047105:intron 40.0%
GTTGTGTTTGATCCTTTGGA+TGG + chr2.3:74430875-74430894 MS.gene047105:CDS 40.0%
TATGGGCCTAATTCTTGAGT+CGG - chr2.3:74432093-74432112 None:intergenic 40.0%
TCAAAGTATGCTGAATCACG+TGG + chr2.3:74429394-74429413 MS.gene047105:CDS 40.0%
TCATATTTGATGGAGCAAGC+AGG + chr2.3:74432304-74432323 MS.gene047105:CDS 40.0%
TCGTAGCTTCCAAGGAATAT+TGG - chr2.3:74432659-74432678 None:intergenic 40.0%
TTTACACTTGATCCTTCCCT+TGG + chr2.3:74431348-74431367 MS.gene047105:CDS 40.0%
TTTGTGCTTAGCACAGGAAA+TGG + chr2.3:74431315-74431334 MS.gene047105:CDS 40.0%
! ATCAAGTTTGCTTAAACCGG+TGG - chr2.3:74430128-74430147 None:intergenic 40.0%
! ATTGACTCACCCAAACATCA+AGG + chr2.3:74431380-74431399 MS.gene047105:CDS 40.0%
! GGTTCCTCAAACATTGATTG+TGG + chr2.3:74430896-74430915 MS.gene047105:CDS 40.0%
! TAAATTCGATTTGCCTCCAC+CGG + chr2.3:74430109-74430128 MS.gene047105:intron 40.0%
! TTGGGCTTTTCTTATCAGCA+GGG - chr2.3:74431902-74431921 None:intergenic 40.0%
! TTTGGGCTTTTCTTATCAGC+AGG - chr2.3:74431903-74431922 None:intergenic 40.0%
! TTTTTACTGACAGGCTGGAT+TGG + chr2.3:74429582-74429601 MS.gene047105:intron 40.0%
!! CAACCTCTTCTGAAACAAGA+AGG - chr2.3:74430720-74430739 None:intergenic 40.0%
!!! TTTTTTGCAGGCACTTGACT+TGG + chr2.3:74432607-74432626 MS.gene047105:intron 40.0%
AGCACAGGAAATGGAGTGAA+TGG + chr2.3:74431324-74431343 MS.gene047105:CDS 45.0%
ATGAGGGAAACGCCAAAAAC+TGG + chr2.3:74431545-74431564 MS.gene047105:CDS 45.0%
ATTGCAACCTGGTAGCAGTT+TGG + chr2.3:74431092-74431111 MS.gene047105:CDS 45.0%
CAGTTCTGTTAGCATCTGCT+TGG - chr2.3:74429336-74429355 None:intergenic 45.0%
CATGTATGGAAGCTCTTGCA+CGG + chr2.3:74431131-74431150 MS.gene047105:CDS 45.0%
CTGAATTCTCCCAAGACCTA+AGG + chr2.3:74432041-74432060 MS.gene047105:intron 45.0%
GAACTAGTGTGGTATCTCGT+TGG - chr2.3:74429850-74429869 None:intergenic 45.0%
GATCGATCGCCAATATTCCT+TGG + chr2.3:74432647-74432666 MS.gene047105:CDS 45.0%
GCAAAAATCCTAGGACTTGC+TGG + chr2.3:74429604-74429623 MS.gene047105:CDS 45.0%
GTTCACCACCAAAGTCTCTT+AGG + chr2.3:74431726-74431745 MS.gene047105:CDS 45.0%
GTTGAAGATGCATTGCAACC+TGG + chr2.3:74431081-74431100 MS.gene047105:CDS 45.0%
TATTTGATGGAGCAAGCAGG+AGG + chr2.3:74432307-74432326 MS.gene047105:CDS 45.0%
TCAAGAATTAGGCCCATAGC+AGG + chr2.3:74432095-74432114 MS.gene047105:intron 45.0%
TCCAAAACTTACTTGGCCGT+TGG - chr2.3:74431577-74431596 None:intergenic 45.0%
TGAGGGAAACGCCAAAAACT+GGG + chr2.3:74431546-74431565 MS.gene047105:CDS 45.0%
TTCACCACTATTTAAGGGGG+AGG + chr2.3:74430490-74430509 MS.gene047105:intron 45.0%
TTGCAGTTTGTGCTTAGCAC+AGG + chr2.3:74431309-74431328 MS.gene047105:intron 45.0%
! AAGTTTGCTTAAACCGGTGG+AGG - chr2.3:74430125-74430144 None:intergenic 45.0%
! ACCAACGGCCAAGTAAGTTT+TGG + chr2.3:74431573-74431592 MS.gene047105:intron 45.0%
! GTGCCTTCTTGTTTCAGAAG+AGG + chr2.3:74430714-74430733 MS.gene047105:intron 45.0%
!! GCTGGATTGGCAAAAATCCT+AGG + chr2.3:74429595-74429614 MS.gene047105:CDS 45.0%
!! TCCTTGCCGACTCAAGAATT+AGG + chr2.3:74432084-74432103 MS.gene047105:intron 45.0%
!! TTTGGTGGTGAACTGTCTTG+TGG - chr2.3:74431719-74431738 None:intergenic 45.0%
!!! CGTTGGTTCATCCCAGTTTT+TGG - chr2.3:74431560-74431579 None:intergenic 45.0%
GCAGCTGGTTACTGCATGTA+TGG + chr2.3:74431117-74431136 MS.gene047105:CDS 50.0%
GCCTAATTCTTGAGTCGGCA+AGG - chr2.3:74432088-74432107 None:intergenic 50.0%
GGGGGAGGAGCAAAAGAAAT+TGG + chr2.3:74430505-74430524 MS.gene047105:intron 50.0%
GTGAAGGCCTTAATCAGCAG+CGG + chr2.3:74430551-74430570 MS.gene047105:CDS 50.0%
TAGGTCCTCGAACCTGCTAT+GGG - chr2.3:74432110-74432129 None:intergenic 50.0%
TGCTCCTCCCCCTTAAATAG+TGG - chr2.3:74430497-74430516 None:intergenic 50.0%
TTAGGTCCTCGAACCTGCTA+TGG - chr2.3:74432111-74432130 None:intergenic 50.0%
! TGGTGTGTCCGCACATGTTT+TGG - chr2.3:74430081-74430100 None:intergenic 50.0%
GCAGGAGGTCAAGCTTTCAC+AGG + chr2.3:74432322-74432341 MS.gene047105:CDS 55.0%
GCTGCTACCAAACTGCTACC+AGG - chr2.3:74431102-74431121 None:intergenic 55.0%
TGGTGTCTCCAGCAAGTCCT+AGG - chr2.3:74429615-74429634 None:intergenic 55.0%
TTAGGCCCATAGCAGGTTCG+AGG + chr2.3:74432102-74432121 MS.gene047105:intron 55.0%
! GGTAGCAGTTTGGTAGCAGC+TGG + chr2.3:74431102-74431121 MS.gene047105:CDS 55.0%
! TGTGCGTCCGCTGCTGATTA+AGG - chr2.3:74430561-74430580 None:intergenic 55.0%
! CTGACTTGCCACGCTGTGCT+GGG - chr2.3:74430762-74430781 None:intergenic 60.0%
! TGACTTGCCACGCTGTGCTG+GGG - chr2.3:74430761-74430780 None:intergenic 60.0%
!! ACTGACTTGCCACGCTGTGC+TGG - chr2.3:74430763-74430782 None:intergenic 60.0%
ATTGTGCCCCCAGCACAGCG+TGG + chr2.3:74430751-74430770 MS.gene047105:CDS 65.0%
GACTTGCCACGCTGTGCTGG+GGG - chr2.3:74430760-74430779 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 74429325 74432733 74429325 ID=MS.gene047105
chr2.3 mRNA 74429325 74432733 74429325 ID=MS.gene047105.t1;Parent=MS.gene047105
chr2.3 exon 74429325 74429483 74429325 ID=MS.gene047105.t1.exon1;Parent=MS.gene047105.t1
chr2.3 CDS 74429325 74429483 74429325 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74429595 74429642 74429595 ID=MS.gene047105.t1.exon2;Parent=MS.gene047105.t1
chr2.3 CDS 74429595 74429642 74429595 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74430506 74430580 74430506 ID=MS.gene047105.t1.exon3;Parent=MS.gene047105.t1
chr2.3 CDS 74430506 74430580 74430506 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74430715 74430776 74430715 ID=MS.gene047105.t1.exon4;Parent=MS.gene047105.t1
chr2.3 CDS 74430715 74430776 74430715 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74430868 74430934 74430868 ID=MS.gene047105.t1.exon5;Parent=MS.gene047105.t1
chr2.3 CDS 74430868 74430934 74430868 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74431039 74431152 74431039 ID=MS.gene047105.t1.exon6;Parent=MS.gene047105.t1
chr2.3 CDS 74431039 74431152 74431039 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74431315 74431401 74431315 ID=MS.gene047105.t1.exon7;Parent=MS.gene047105.t1
chr2.3 CDS 74431315 74431401 74431315 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74431514 74431584 74431514 ID=MS.gene047105.t1.exon8;Parent=MS.gene047105.t1
chr2.3 CDS 74431514 74431584 74431514 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74431694 74431759 74431694 ID=MS.gene047105.t1.exon9;Parent=MS.gene047105.t1
chr2.3 CDS 74431694 74431759 74431694 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74431848 74431934 74431848 ID=MS.gene047105.t1.exon10;Parent=MS.gene047105.t1
chr2.3 CDS 74431848 74431934 74431848 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74432279 74432354 74432279 ID=MS.gene047105.t1.exon11;Parent=MS.gene047105.t1
chr2.3 CDS 74432279 74432354 74432279 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
chr2.3 exon 74432617 74432733 74432617 ID=MS.gene047105.t1.exon12;Parent=MS.gene047105.t1
chr2.3 CDS 74432617 74432733 74432617 ID=cds.MS.gene047105.t1;Parent=MS.gene047105.t1
Gene Sequence

>MS.gene047105

ATGGATCACCAAGCAGATGCTAACAGAACTGATTTGATGACAATAACTAGGTTTGTTCTGAATGAGCAATCAAAGTATGCTGAATCACGTGGAGATTTCACCATTCTCATCAATCACATTGTTCTTGGCTGCAAATTTGTTTGTTCTTCTGTTAACAAGGTACACACACACTCTCAAGTCTGAATTCATTTTGATTAGACAAAATTCACAATTACTTTTGTTTTTTATTTTTACCATTAATTGAATGTTTATAATTTTTTTTACTGACAGGCTGGATTGGCAAAAATCCTAGGACTTGCTGGAGACACCAATGTTCAAGTGAGTTTTGTTTTTTATAATATTTTCCTTTAATTTAGAATGTTACGTGTTCGTGTTAATATGCTACTTTGTCACACCATCTAAATCTTTTTTGTGTGATAGCGACACCATCTAAATCTGAAATAATATTATGACAAAAAAGACTTTATTTATTTAATATGAGTTTAATGGACATACACTAAACCATTATTTTTACATCAACATCCAACGAGATACCACACTAGTTCCATATCTTAGTACTAATTTCTACTATCCTTATAAAACTGAGTGATGTGTATTGAATTTTCATTGGATTGGATGTTAGTGTACGTAAAACAATTTACACTTGCATGTCCTTTATATCCATGTAATATTATATTTTCAACTGTAACTCTTTTAGTAGTTAAAATTCACATGAATCAATTTTTGTTTATGATGATAATTGCGCAAATACTTCCAAAACATGTGCGGACACACCAATTAGCTTTAAATTCGATTTGCCTCCACCGGTTTAAGCAAACTTGATGTAACAGAGATAAGGAAAAGAGTGAATTCCCTTTAAAATACTTGAATTCCTTGAAGTGAATTACACACTCACTTACAACGTATTGATAGATGAGAGTTTAGTGAATAAAAGTTTCATCAATTACACCTGTGCATTAGAGAAAAGAAAAAATAATTTAGAAATGATTTTCGCATAACTTTAGATCATGAAAGTATGAATTTCATGTTGTTTTTCATCCCTTCAAGTGTCTCTATTTCCGTAGAAACTTATAATATTTGGTGAAAGAGAAATACTCATCAAATAACATTTCACAAAGTTTCAAGAGGTTGATATAAGTATATATGTAACATCCCTATTTTTCTATTCACCACTATTTAAGGGGGAGGAGCAAAAGAAATTGGATGTGATTTCTAATGAAGTATTTGTGAAGGCCTTAATCAGCAGCGGACGCACAGTAAGTCTATACCCTCGAGTTTGCTTTATTTTGTTTTTTTGTTGGTATACGTTTAAGTTTGATTAATTCATATGCATTTTATTTGGCATTGTTTTGTTCCTGATTTAGTAAAATGCAATTTTTTGCTTTGGCAGTGCCTTCTTGTTTCAGAAGAGGTTGACGATGCTATCATTGTGCCCCCAGCACAGCGTGGCAAGTCAGTTCCAAAATATTCTATATTTATCAAATCACACATGATCATATTAATATTCATGTGACATTAACAAATTTTCTTTTTGATTTTGAAGATACATAGTTGTGTTTGATCCTTTGGATGGTTCCTCAAACATTGATTGTGGAGTTTCAATAGGAACTGTAAGAATTTTTCTTTTTTATTTTATCCCAAGCTTGATTGCTATATTTTAAATCATCAAAACAGAAATCATACTAAAATCTAGCATTTTCACTATTGCATATAGATCTTTGGTATTTACACAGTGAAAGATACAACTGAAGTTAGCGTTGAAGATGCATTGCAACCTGGTAGCAGTTTGGTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGGTAAAACTAGCACCGATTATGCTAATAGAATGTTATGAAGTTTTTCTTTTAACTATTTGATATTTACATTTCACAATTTGCTTTCATTTTTATTATGAAATTGAAATATTTTTCATGTCATAAATACCTGATTCTGATCGAATAAATTGCACGGATTTGCAGTTTGTGCTTAGCACAGGAAATGGAGTGAATGGTTTTACACTTGATCCTTCCCTTGGAGAGTTCATATTGACTCACCCAAACATCAAGGTACATGCATTATGTTGCAGCTAAATTGGTAAATAAATTAACATAAAGTTATTAGGTTTTTACTTAGGCAATTCTGAATTTTATTTTCTGTAACGTGCGTGTTACTTCATAGATACCAAAGAAAGGAAAGATTTATTCTGTGAATGAGGGAAACGCCAAAAACTGGGATGAACCAACGGCCAAGTAAGTTTTGGAAATTCTGTTCTCGAGTACTATTTGAAACCTGATTCTTGAGTTAACATGAAACAATTGAGCTAATTTTCAAATGAATCTTTCGAACTTTGTTTCGTAGATACGTAGAAAATTGCAAGTTTCCACAAGACAGTTCACCACCAAAGTCTCTTAGGTATATTGGCAGGTATATGATTCTGAACTTTATGTAGTTTGATCTTGGTTTTCCTTCAAGTTTCTTCATTTTATTTGCTAACGAAAAATGCACAATACAGTATGGTAGCCGATGTCCATAGAACATTGCTATATGGTGGTATATTCATGTACCCTGCTGATAAGAAAAGCCCAAATGGAAAGCTAAGGTAAGACTGTGATATACTTTGGTGTGTCTATTTGTAATTAACATTTGATCTAGCATCCTTAGGTCTTAGGAGAGTTAGTAAAATGATTCTCCGATAGAAAAGGAATCTGAATTCTCCCAAGACCTAAGGACATTTTAAAATCGGACATTTCCTTGCCGACTCAAGAATTAGGCCCATAGCAGGTTCGAGGACCTAAATTATTGGGATATGTAGTCCCGTTTGCAATACTCCATACATAGATGAGAACTTGGCGAATTCTTATCTGTTTTAATTGACCGAGTTGTGTTATATGATATGTTTAAACTAATAACTTATGGATATGAAATTTGACTGTAAATTATCAGGGTTCTGTATGAAGTTTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAAGCTTTCACAGGAAAACAAAGGGTATTACACTTTTTCTTTGCACTATTAGTTTATATTGCTACAAAACTCTTTAGTTGCAACACTTCAATTTGTTACTCTCTCATGCATCTCTGCATCTTCAATATGGTATACTGTATCTAACTTTAAATAAACACGAATCATACTTTTTTTTTATACTATCATGAATCATACTTTATACCTTATATCAGTTATTTAATCGTTGAATTGGTCATTTGATACTACATCTGATGGATCTCATGTTCATACGATAATTTTTTTGCAGGCACTTGACTTGGTTCCTAAGAAAATACATGATCGATCGCCAATATTCCTTGGAAGCTACGATGAAATTGAGCATATAAAAGAGCTTTATGCAGAATCCAAAGAAAATGGTGCATGA
Protein sequence

>MS.gene047105.t1

MDHQADANRTDLMTITRFVLNEQSKYAESRGDFTILINHIVLGCKFVCSSVNKAGLAKILGLAGDTNVQGEEQKKLDVISNEVFVKALISSGRTCLLVSEEVDDAIIVPPAQRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYTVKDTTEVSVEDALQPGSSLVAAGYCMYGSSCTFVLSTGNGVNGFTLDPSLGEFILTHPNIKIPKKGKIYSVNEGNAKNWDEPTAKYVENCKFPQDSSPPKSLRYIGSMVADVHRTLLYGGIFMYPADKKSPNGKLRVLYEVFPMSYLMEQAGGQAFTGKQRALDLVPKKIHDRSPIFLGSYDEIEHIKELYAESKENGA