AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047111.t1 MTR_2g007930 99.532 427 2 0 1 427 1 427 0.0 886
MS.gene047111.t1 MTR_1g098790 80.000 435 75 5 1 427 1 431 0.0 691
MS.gene047111.t1 MTR_5g020580 55.530 434 168 12 1 427 1 416 3.01e-156 448
MS.gene047111.t1 MTR_2g020280 57.743 381 138 6 49 427 34 393 3.67e-154 442
MS.gene047111.t1 MTR_1g088960 53.009 432 168 10 1 427 1 402 2.23e-153 440
MS.gene047111.t1 MTR_8g077195 53.023 430 181 8 1 427 1 412 1.63e-149 431
MS.gene047111.t1 MTR_1g022370 50.000 448 177 9 1 427 1 422 4.24e-142 412
MS.gene047111.t1 MTR_2g020280 56.825 315 113 6 115 427 1 294 7.63e-119 348
MS.gene047111.t1 MTR_2g076200 48.936 376 144 9 54 427 42 371 3.90e-117 347
MS.gene047111.t1 MTR_8g077620 40.654 428 204 14 1 420 1 386 2.54e-93 286
MS.gene047111.t1 MTR_2g076210 42.895 380 162 11 54 427 37 367 3.48e-93 285
MS.gene047111.t1 MTR_8g077675 44.638 401 177 14 32 420 28 395 5.81e-92 283
MS.gene047111.t1 MTR_8g077650 39.119 386 149 14 49 419 14 328 1.55e-67 218
MS.gene047111.t1 MTR_1g023800 52.318 151 64 4 1 148 1 146 3.50e-44 151
MS.gene047111.t1 MTR_8g077640 43.612 227 96 6 1 207 46 260 6.85e-42 152
MS.gene047111.t1 MTR_8g077640 45.455 99 47 2 320 417 291 383 1.84e-16 80.9
MS.gene047111.t1 MTR_0210s0010 41.414 99 51 2 96 194 8 99 1.77e-15 72.4
MS.gene047111.t1 MTR_2g105390 40.909 110 44 5 323 426 265 359 5.21e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047111.t1 AT1G76900 70.346 462 95 11 1 427 1 455 0.0 611
MS.gene047111.t1 AT1G76900 70.346 462 95 11 1 427 1 455 0.0 611
MS.gene047111.t1 AT1G76900 70.346 462 95 11 1 427 1 455 0.0 611
MS.gene047111.t1 AT1G25280 73.171 451 91 14 1 427 1 445 0.0 611
MS.gene047111.t1 AT1G43640 68.778 442 110 7 1 427 1 429 0.0 607
MS.gene047111.t1 AT1G43640 70.667 375 85 5 66 427 1 363 0.0 537
MS.gene047111.t1 AT2G47900 55.324 432 162 7 1 427 1 406 1.07e-167 477
MS.gene047111.t1 AT2G47900 55.324 432 162 7 1 427 1 406 1.07e-167 477
MS.gene047111.t1 AT2G47900 55.196 433 162 8 1 427 1 407 2.83e-166 473
MS.gene047111.t1 AT2G18280 53.226 434 155 9 1 427 1 393 4.75e-147 424
MS.gene047111.t1 AT2G18280 53.226 434 155 9 1 427 1 393 4.75e-147 424
MS.gene047111.t1 AT1G47270 50.461 434 162 8 1 427 1 388 2.38e-140 407
MS.gene047111.t1 AT1G47270 50.461 434 162 8 1 427 26 413 3.05e-140 407
MS.gene047111.t1 AT1G47270 50.461 434 162 8 1 427 25 412 3.15e-140 407
MS.gene047111.t1 AT3G06380 52.243 379 145 8 54 427 33 380 6.96e-129 377
MS.gene047111.t1 AT5G18680 49.392 411 161 11 32 427 11 389 3.50e-126 370
MS.gene047111.t1 AT1G25280 73.063 271 52 11 174 427 1 267 8.60e-124 360
MS.gene047111.t1 AT1G25280 73.063 271 52 11 174 427 1 267 8.60e-124 360
MS.gene047111.t1 AT1G53320 48.556 381 150 8 51 427 41 379 2.30e-116 345
MS.gene047111.t1 AT5G18680 52.012 323 115 9 113 427 7 297 2.09e-101 304
MS.gene047111.t1 AT3G06380 51.429 315 118 7 117 427 5 288 1.84e-100 301
MS.gene047111.t1 AT1G61940 58.140 86 36 0 57 142 1 86 2.46e-31 121
MS.gene047111.t1 AT1G61940 60.656 61 24 0 57 117 1 61 3.01e-19 87.0

Find 118 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTTGTTAGTTGAAAA+TGG 0.215408 2.3:+74566555 MS.gene047111:intron
ATCTGCAACTAACCTGTTTC+AGG 0.217420 2.3:-74565832 None:intergenic
TACACCAGATCAAACTTTCT+TGG 0.237446 2.3:+74567145 MS.gene047111:intron
ATGACATCAAATAGTAATTC+TGG 0.251135 2.3:-74565665 None:intergenic
CGTGACGTTCGTGATAGTTT+TGG 0.276663 2.3:+74565512 MS.gene047111:CDS
CCCGCATCAAGTGCTGAATT+TGG 0.304909 2.3:-74567376 None:intergenic
CAGTCCCCGGAGGACATATA+TGG 0.310396 2.3:-74567213 None:intergenic
GTGCTTCTGTTTGCCAGTCT+TGG 0.312781 2.3:+74565744 MS.gene047111:CDS
GATGCGGGCGGCTCCGTTCC+CGG 0.316477 2.3:+74567391 MS.gene047111:CDS
CAGAATAATCTTATCATGTT+CGG 0.319403 2.3:-74567725 None:intergenic
GCTTCCACCCAACCACCTGC+TGG 0.321946 2.3:+74567673 MS.gene047111:CDS
GCCGTCATCATCCTCATTAC+AGG 0.338459 2.3:-74567530 None:intergenic
TTGTAATTCAAAATAGTTGC+TGG 0.356421 2.3:+74565630 MS.gene047111:CDS
GTGAATTAGCTCTGGCTGTC+CGG 0.359818 2.3:-74567410 None:intergenic
TCATTCAATGCTTTATCAAA+AGG 0.375284 2.3:+74565977 MS.gene047111:CDS
CATATATGTCCTCCGGGGAC+TGG 0.388613 2.3:+74567214 MS.gene047111:CDS
ACATATATGGGCAGAAGTGC+AGG 0.394714 2.3:-74567200 None:intergenic
GTTAGTTTGCCGCAGAACTC+TGG 0.395072 2.3:-74565797 None:intergenic
TTCTGCAATTCGGCAAAGTT+GGG 0.396243 2.3:+74567743 MS.gene047111:CDS
AATTACTATTTGATGTCATT+CGG 0.397064 2.3:+74565669 MS.gene047111:CDS
AAAGCTTGGAATGCAGATAA+AGG 0.399095 2.3:-74567796 None:intergenic
TTACTCGTCCCCGAAAATTA+AGG 0.402869 2.3:-74567618 None:intergenic
ATTCCCTGTGTCCCTGAAAC+AGG 0.406088 2.3:+74565820 MS.gene047111:CDS
TTCTGCCCATATATGTCCTC+CGG 0.408726 2.3:+74567207 MS.gene047111:CDS
CTTCCACCCAACCACCTGCT+GGG 0.409907 2.3:+74567674 MS.gene047111:CDS
CACTGAGTATGTTATTTCAA+TGG 0.410829 2.3:+74566620 MS.gene047111:CDS
GTGAGAATACTTGGCCTTCA+AGG 0.416059 2.3:+74565705 MS.gene047111:CDS
TCGGCGCCCCAGCAGGTGGT+TGG 0.419959 2.3:-74567681 None:intergenic
CTTCTGTTTGCCAGTCTTGG+AGG 0.420970 2.3:+74565747 MS.gene047111:CDS
TGTAATTGTTCATGCCATCT+TGG 0.429018 2.3:-74567586 None:intergenic
CTCAGTGTAGGTTGTTCTCC+TGG 0.432833 2.3:-74566604 None:intergenic
TAACTCCCAGATGGGACCTT+TGG 0.438868 2.3:-74567271 None:intergenic
GCAACTACATGCTTCCTTGA+AGG 0.442687 2.3:-74565719 None:intergenic
TGCTCCGGAACGAGTCCTCC+AGG 0.444143 2.3:-74567438 None:intergenic
GTATCGCCAAAGGTCCCATC+TGG 0.445185 2.3:+74567265 MS.gene047111:CDS
GATGGTGTCGGCGCCCCAGC+AGG 0.447033 2.3:-74567688 None:intergenic
GATAAGATTATTCTGCAATT+CGG 0.448717 2.3:+74567733 MS.gene047111:CDS
CGGCGCCCCAGCAGGTGGTT+GGG 0.449066 2.3:-74567680 None:intergenic
AGAATAATCTTATCATGTTC+GGG 0.450318 2.3:-74567724 None:intergenic
ATTCTGCAATTCGGCAAAGT+TGG 0.451251 2.3:+74567742 MS.gene047111:CDS
ATATATGTCCTCCGGGGACT+GGG 0.453188 2.3:+74567215 MS.gene047111:CDS
TGACATCAAATAGTAATTCT+GGG 0.457179 2.3:-74565664 None:intergenic
TAATGCAATGCATCTTCCTT+GGG 0.462060 2.3:-74567342 None:intergenic
CATTCAATGCTTTATCAAAA+GGG 0.462254 2.3:+74565978 MS.gene047111:CDS
AATTGTTCATGCCATCTTGG+AGG 0.466985 2.3:-74567583 None:intergenic
CAGGGCTCAGACAAAGGTAT+AGG 0.479017 2.3:-74566023 None:intergenic
TGACGGCAAGATGAGACCTT+TGG 0.479423 2.3:+74567546 MS.gene047111:CDS
TCTGCCCATATATGTCCTCC+GGG 0.481297 2.3:+74567208 MS.gene047111:CDS
TGAATTAGCTCTGGCTGTCC+GGG 0.484556 2.3:-74567409 None:intergenic
TAGAGGAGAGTGAGAATACT+TGG 0.484573 2.3:+74565696 MS.gene047111:CDS
ATAATGCAATGCATCTTCCT+TGG 0.491165 2.3:-74567343 None:intergenic
AAACTATTCACAAGCCAACT+TGG 0.491824 2.3:-74567845 None:intergenic
TTATCATGTTCGGGTGGTGC+TGG 0.495403 2.3:-74567715 None:intergenic
TTAAGCATATTGCAAAAGCT+TGG 0.496726 2.3:-74567810 None:intergenic
GTTCCCTGGAGGACTCGTTC+CGG 0.496788 2.3:+74567434 MS.gene047111:CDS
ATGATTCCGTCTCGTGGCCC+TGG 0.498403 2.3:-74565958 None:intergenic
TCCTCTCTGCTAAGAGGACC+AGG 0.507703 2.3:+74566586 MS.gene047111:CDS
TTAGTTTGCCGCAGAACTCT+GGG 0.509843 2.3:-74565796 None:intergenic
AAAGTCTCATGGTTCTGTAC+AGG 0.510601 2.3:+74565589 MS.gene047111:CDS
TGTAATTCAAAATAGTTGCT+GGG 0.513418 2.3:+74565631 MS.gene047111:CDS
AGAGCTAATTCACCGTTCCC+TGG 0.515311 2.3:+74567420 MS.gene047111:CDS
ACCAAATTCAGCACTTGATG+CGG 0.517901 2.3:+74567375 MS.gene047111:CDS
ACTTCGAAAATGAGATGCTC+CGG 0.519823 2.3:-74567453 None:intergenic
CGCCCCAGCAGGTGGTTGGG+TGG 0.525317 2.3:-74567677 None:intergenic
AGGGAACGGTGAATTAGCTC+TGG 0.526856 2.3:-74567418 None:intergenic
TAGCTCTGGCTGTCCGGGAA+CGG 0.532391 2.3:-74567404 None:intergenic
GAGACTTTCCTCTATGATGA+TGG 0.534079 2.3:-74565574 None:intergenic
TGCACATATTCCTCCAAGAC+TGG 0.534318 2.3:-74565757 None:intergenic
AATTCCTCCTCTCTGCTAAG+AGG 0.537777 2.3:+74566580 MS.gene047111:CDS
TTCCACCCAACCACCTGCTG+GGG 0.546085 2.3:+74567675 MS.gene047111:CDS
GTTTACCAGGGCTCAGACAA+AGG 0.547523 2.3:-74566029 None:intergenic
GGTGCTGGTTGAGATGGTGT+CGG 0.550204 2.3:-74567700 None:intergenic
CCAAATTCAGCACTTGATGC+GGG 0.550546 2.3:+74567376 MS.gene047111:CDS
GGTGTCGGCGCCCCAGCAGG+TGG 0.552680 2.3:-74567685 None:intergenic
CAATCGAGTTCAGCAGTGCA+CGG 0.554602 2.3:+74567488 MS.gene047111:CDS
AAGCAGCTTTGACACCAAGT+TGG 0.560190 2.3:+74567831 MS.gene047111:CDS
CGGCTCGTCTTCCCAGTCCC+CGG 0.560397 2.3:-74567226 None:intergenic
TCGGGTGGTGCTGGTTGAGA+TGG 0.560858 2.3:-74567706 None:intergenic
AGTCCCCGGAGGACATATAT+GGG 0.561123 2.3:-74567212 None:intergenic
CTATACCTTTGTCTGAGCCC+TGG 0.566295 2.3:+74566024 MS.gene047111:CDS
AGATCAAGTAATACTTACAT+TGG 0.570296 2.3:+74566660 MS.gene047111:CDS
ACATATGAACTAAATGTGCT+CGG 0.570299 2.3:+74567310 MS.gene047111:CDS
CTAAATGTGCTCGGAACTCG+AGG 0.572448 2.3:+74567319 MS.gene047111:CDS
CTAACCTGTTTCAGGGACAC+AGG 0.573911 2.3:-74565824 None:intergenic
TCTGCAACTAACCTGTTTCA+GGG 0.575798 2.3:-74565831 None:intergenic
TGGGAGTTACAACATAGCTC+AGG 0.584581 2.3:+74567285 MS.gene047111:CDS
CTTACTGGCCATCATCATAG+AGG 0.586395 2.3:+74565566 MS.gene047111:CDS
GACATCAAATAGTAATTCTG+GGG 0.586583 2.3:-74565663 None:intergenic
GGCATGAACAATTACAGTGC+TGG 0.588906 2.3:+74567593 MS.gene047111:CDS
TGATGTCATTCGGCGACTAG+AGG 0.590244 2.3:+74565679 MS.gene047111:CDS
GGAACGAGTCCTCCAGGGAA+CGG 0.592037 2.3:-74567432 None:intergenic
CATCATAGAGGAAAGTCTCA+TGG 0.596493 2.3:+74565578 MS.gene047111:CDS
TGAAATAACATACTCAGTGT+AGG 0.597863 2.3:-74566616 None:intergenic
TAAAGGATATCGATAATCCA+TGG 0.599763 2.3:-74567779 None:intergenic
GCTATGTTGTAACTCCCAGA+TGG 0.603839 2.3:-74567280 None:intergenic
CATTGAATGATTCCGTCTCG+TGG 0.607917 2.3:-74565964 None:intergenic
CTATGTTGTAACTCCCAGAT+GGG 0.609999 2.3:-74567279 None:intergenic
TGCTCGGAACTCGAGGCCCA+AGG 0.612968 2.3:+74567326 MS.gene047111:CDS
TATCGCCAAAGGTCCCATCT+GGG 0.614613 2.3:+74567266 MS.gene047111:CDS
TTTCAGCCAGGGCCACGAGA+CGG 0.619741 2.3:+74565952 MS.gene047111:intron
GAACGTCACGAACTATGCTA+CGG 0.624312 2.3:-74565499 None:intergenic
TAACCTGTTTCAGGGACACA+GGG 0.626828 2.3:-74565823 None:intergenic
TCCTGGTCCTCTTAGCAGAG+AGG 0.627316 2.3:-74566587 None:intergenic
CATATATGGGCAGAAGTGCA+GGG 0.629040 2.3:-74567199 None:intergenic
TCCTGTAATGAGGATGATGA+CGG 0.629322 2.3:+74567529 MS.gene047111:CDS
GTCTTGGAGGAATATGTGCA+AGG 0.636885 2.3:+74565760 MS.gene047111:CDS
TGGGAAAGATATGTTCACCA+TGG 0.642687 2.3:+74567762 MS.gene047111:CDS
GTTAAGAGCCCAGAGTTCTG+CGG 0.649777 2.3:+74565788 MS.gene047111:CDS
TGGTCCTCTTAGCAGAGAGG+AGG 0.654986 2.3:-74566584 None:intergenic
GCTCCGGAACGAGTCCTCCA+GGG 0.659722 2.3:-74567437 None:intergenic
ATACTTACATTGGAAAACTG+AGG 0.671640 2.3:+74566670 MS.gene047111:CDS
ACATCAAATAGTAATTCTGG+GGG 0.673779 2.3:-74565662 None:intergenic
AATTCAGCACTTGATGCGGG+CGG 0.674604 2.3:+74567379 MS.gene047111:CDS
ATAATCTTATCATGTTCGGG+TGG 0.690693 2.3:-74567721 None:intergenic
CTCGTCTTCCCAGTCCCCGG+AGG 0.692752 2.3:-74567223 None:intergenic
GCTAATTCACCGTTCCCTGG+AGG 0.694493 2.3:+74567423 MS.gene047111:CDS
CTGCCCATATATGTCCTCCG+GGG 0.741928 2.3:+74567209 MS.gene047111:CDS
ATATGGGCAGAAGTGCAGGG+AGG 0.788147 2.3:-74567196 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATAAAATTGAAGC+AGG - chr2.3:74566528-74566547 None:intergenic 20.0%
!! AATTACTATTTGATGTCATT+CGG + chr2.3:74565669-74565688 MS.gene047111:CDS 20.0%
!! CATAAGTGGAAAATTATTTA+TGG - chr2.3:74567010-74567029 None:intergenic 20.0%
!! TGAAATAACAACAATAGTTA+AGG + chr2.3:74565896-74565915 MS.gene047111:intron 20.0%
!! TTTCAAAATTTAAGCAGTTT+AGG + chr2.3:74566145-74566164 MS.gene047111:intron 20.0%
!!! ATACCTTTTTAGAAAATCTA+CGG - chr2.3:74567249-74567268 None:intergenic 20.0%
!!! CTATGTTAAAAACTTCTTTT+CGG + chr2.3:74566733-74566752 MS.gene047111:intron 20.0%
! AAATATTCATGGAATGACAA+CGG - chr2.3:74566325-74566344 None:intergenic 25.0%
! AGAATAATCTTATCATGTTC+GGG - chr2.3:74567727-74567746 None:intergenic 25.0%
! AGATCAAGTAATACTTACAT+TGG + chr2.3:74566660-74566679 MS.gene047111:CDS 25.0%
! ATGACATCAAATAGTAATTC+TGG - chr2.3:74565668-74565687 None:intergenic 25.0%
! CAAAGGGAAATAAATATTCA+TGG - chr2.3:74566336-74566355 None:intergenic 25.0%
! CAGAATAATCTTATCATGTT+CGG - chr2.3:74567728-74567747 None:intergenic 25.0%
! CATTCAATGCTTTATCAAAA+GGG + chr2.3:74565978-74565997 MS.gene047111:CDS 25.0%
! GATAAGATTATTCTGCAATT+CGG + chr2.3:74567733-74567752 MS.gene047111:CDS 25.0%
! TCATTCAATGCTTTATCAAA+AGG + chr2.3:74565977-74565996 MS.gene047111:CDS 25.0%
! TGACATCAAATAGTAATTCT+GGG - chr2.3:74565667-74565686 None:intergenic 25.0%
! TGTAATTCAAAATAGTTGCT+GGG + chr2.3:74565631-74565650 MS.gene047111:CDS 25.0%
! TGTGTTGTAACTGTTATTAT+CGG + chr2.3:74566955-74566974 MS.gene047111:intron 25.0%
! TTGTAATTCAAAATAGTTGC+TGG + chr2.3:74565630-74565649 MS.gene047111:CDS 25.0%
!! TCTTTTATCGTCATATGTTT+AGG + chr2.3:74566906-74566925 MS.gene047111:intron 25.0%
!! TGATTCTTCTGTTTTACTTT+TGG - chr2.3:74566836-74566855 None:intergenic 25.0%
!!! AACATCTCATTTTTATGCAT+CGG - chr2.3:74566295-74566314 None:intergenic 25.0%
!!! CAACTATTTTGAATTACAAG+AGG - chr2.3:74565629-74565648 None:intergenic 25.0%
!!! GATTCTTCTGTTTTACTTTT+GGG - chr2.3:74566835-74566854 None:intergenic 25.0%
!!! GTTTAATTTGAGATCTACTT+TGG + chr2.3:74566242-74566261 MS.gene047111:intron 25.0%
!!! TTAAAATGCGTTTTGATAGT+CGG - chr2.3:74566810-74566829 None:intergenic 25.0%
AACAGAAAAAACTCAGCAAA+TGG - chr2.3:74567073-74567092 None:intergenic 30.0%
AAGTTGCAATGAATTTCAGT+TGG + chr2.3:74566867-74566886 MS.gene047111:intron 30.0%
ACATATGAACTAAATGTGCT+CGG + chr2.3:74567310-74567329 MS.gene047111:CDS 30.0%
ACATCAAATAGTAATTCTGG+GGG - chr2.3:74565665-74565684 None:intergenic 30.0%
ATACTTACATTGGAAAACTG+AGG + chr2.3:74566670-74566689 MS.gene047111:CDS 30.0%
CTGTTTGATATCCATTATGT+CGG + chr2.3:74566383-74566402 MS.gene047111:intron 30.0%
GAAGATATGAATAGCAAACA+AGG - chr2.3:74567046-74567065 None:intergenic 30.0%
GACATCAAATAGTAATTCTG+GGG - chr2.3:74565666-74565685 None:intergenic 30.0%
TAAAACCATATATACCCACT+AGG - chr2.3:74566077-74566096 None:intergenic 30.0%
TAAAGGATATCGATAATCCA+TGG - chr2.3:74567782-74567801 None:intergenic 30.0%
TGAAATAACATACTCAGTGT+AGG - chr2.3:74566619-74566638 None:intergenic 30.0%
TTAACATAGTAGATGAGAGA+AGG - chr2.3:74566722-74566741 None:intergenic 30.0%
TTAAGCATATTGCAAAAGCT+TGG - chr2.3:74567813-74567832 None:intergenic 30.0%
!! AGTTTTGATGTCAAACTTAC+TGG + chr2.3:74565551-74565570 MS.gene047111:CDS 30.0%
!! CACTGAGTATGTTATTTCAA+TGG + chr2.3:74566620-74566639 MS.gene047111:CDS 30.0%
!!! ACTTCTAAAGTTTTGATGCT+AGG + chr2.3:74566462-74566481 MS.gene047111:intron 30.0%
!!! CTTCTAAAGTTTTGATGCTA+GGG + chr2.3:74566463-74566482 MS.gene047111:intron 30.0%
AAAGCTTGGAATGCAGATAA+AGG - chr2.3:74567799-74567818 None:intergenic 35.0%
ACTCCTAGAATCAATCACAA+AGG - chr2.3:74566353-74566372 None:intergenic 35.0%
ATAATCTTATCATGTTCGGG+TGG - chr2.3:74567724-74567743 None:intergenic 35.0%
ATAATGCAATGCATCTTCCT+TGG - chr2.3:74567346-74567365 None:intergenic 35.0%
CGGAGGTAATAAATAGTCTA+GGG + chr2.3:74566975-74566994 MS.gene047111:intron 35.0%
CTCCTAGAATCAATCACAAA+GGG - chr2.3:74566352-74566371 None:intergenic 35.0%
GAATATCAGCATCACATAAG+TGG - chr2.3:74567024-74567043 None:intergenic 35.0%
GTTGTAACTGTTATTATCGG+AGG + chr2.3:74566958-74566977 MS.gene047111:intron 35.0%
TAATGCAATGCATCTTCCTT+GGG - chr2.3:74567345-74567364 None:intergenic 35.0%
TACACCAGATCAAACTTTCT+TGG + chr2.3:74567145-74567164 MS.gene047111:intron 35.0%
TATATACCCACTAGGTAACT+AGG - chr2.3:74566069-74566088 None:intergenic 35.0%
TCGGAGGTAATAAATAGTCT+AGG + chr2.3:74566974-74566993 MS.gene047111:intron 35.0%
TGTAATTGTTCATGCCATCT+TGG - chr2.3:74567589-74567608 None:intergenic 35.0%
TGTTCCAAGAAAGTTTGATC+TGG - chr2.3:74567152-74567171 None:intergenic 35.0%
TTGATATCCATTATGTCGGA+GGG + chr2.3:74566387-74566406 MS.gene047111:intron 35.0%
TTTGATATCCATTATGTCGG+AGG + chr2.3:74566386-74566405 MS.gene047111:intron 35.0%
! AGTTACCTAGTGGGTATATA+TGG + chr2.3:74566069-74566088 MS.gene047111:intron 35.0%
! GTTTTATGTTCAGATGCTTC+TGG + chr2.3:74566091-74566110 MS.gene047111:intron 35.0%
! TTCCCTTTGTGATTGATTCT+AGG + chr2.3:74566347-74566366 MS.gene047111:intron 35.0%
!! GAGCCGTAGATTTTCTAAAA+AGG + chr2.3:74567243-74567262 MS.gene047111:CDS 35.0%
!! GCAGCTTTGTTAGTTGAAAA+TGG + chr2.3:74566555-74566574 MS.gene047111:intron 35.0%
!! TTCTAAAAAGGTATCGCCAA+AGG + chr2.3:74567255-74567274 MS.gene047111:CDS 35.0%
!!! ATAGTTTTGGGAGCTTATCT+AGG + chr2.3:74565525-74565544 MS.gene047111:CDS 35.0%
AATTGTTCATGCCATCTTGG+AGG - chr2.3:74567586-74567605 None:intergenic 40.0%
ACCAAATTCAGCACTTGATG+CGG + chr2.3:74567375-74567394 MS.gene047111:CDS 40.0%
ACTTCGAAAATGAGATGCTC+CGG - chr2.3:74567456-74567475 None:intergenic 40.0%
ATCTGCAACTAACCTGTTTC+AGG - chr2.3:74565835-74565854 None:intergenic 40.0%
ATTCTGCAATTCGGCAAAGT+TGG + chr2.3:74567742-74567761 MS.gene047111:CDS 40.0%
CATCATAGAGGAAAGTCTCA+TGG + chr2.3:74565578-74565597 MS.gene047111:CDS 40.0%
CTATGTTGTAACTCCCAGAT+GGG - chr2.3:74567282-74567301 None:intergenic 40.0%
GAGACTTTCCTCTATGATGA+TGG - chr2.3:74565577-74565596 None:intergenic 40.0%
TAGAGGAGAGTGAGAATACT+TGG + chr2.3:74565696-74565715 MS.gene047111:CDS 40.0%
TCCTGTAATGAGGATGATGA+CGG + chr2.3:74567529-74567548 MS.gene047111:CDS 40.0%
TCTGCAACTAACCTGTTTCA+GGG - chr2.3:74565834-74565853 None:intergenic 40.0%
TGAAAAACAAGCCTCCAAGA+TGG + chr2.3:74567572-74567591 MS.gene047111:CDS 40.0%
TGGGAAAGATATGTTCACCA+TGG + chr2.3:74567762-74567781 MS.gene047111:CDS 40.0%
TTACTCGTCCCCGAAAATTA+AGG - chr2.3:74567621-74567640 None:intergenic 40.0%
TTCTGCAATTCGGCAAAGTT+GGG + chr2.3:74567743-74567762 MS.gene047111:CDS 40.0%
! AAAGTCTCATGGTTCTGTAC+AGG + chr2.3:74565589-74565608 MS.gene047111:CDS 40.0%
! GTGACGTTCGTGATAGTTTT+GGG + chr2.3:74565513-74565532 MS.gene047111:CDS 40.0%
! GTGATTGATTCTAGGAGTCT+TGG + chr2.3:74566355-74566374 MS.gene047111:intron 40.0%
!! CGTTTTGATAGTCGGAAACT+CGG - chr2.3:74566802-74566821 None:intergenic 40.0%
!! GGCTTGTTTTTCAGAACCAA+AGG - chr2.3:74567565-74567584 None:intergenic 40.0%
!! TAAGCGAAGAGTGTTTACCA+GGG - chr2.3:74566044-74566063 None:intergenic 40.0%
!! TTCGTTTCACTTTTCAGCCA+GGG + chr2.3:74565941-74565960 MS.gene047111:intron 40.0%
!!! AGTGCTGGTGCCTTAATTTT+CGG + chr2.3:74567608-74567627 MS.gene047111:CDS 40.0%
AATTCCTCCTCTCTGCTAAG+AGG + chr2.3:74566580-74566599 MS.gene047111:CDS 45.0%
CATTGAATGATTCCGTCTCG+TGG - chr2.3:74565967-74565986 None:intergenic 45.0%
CCAAATTCAGCACTTGATGC+GGG + chr2.3:74567376-74567395 MS.gene047111:CDS 45.0%
CTTACGCCTAGTTACCTAGT+GGG + chr2.3:74566060-74566079 MS.gene047111:intron 45.0%
CTTACTGGCCATCATCATAG+AGG + chr2.3:74565566-74565585 MS.gene047111:CDS 45.0%
GAACGTCACGAACTATGCTA+CGG - chr2.3:74565502-74565521 None:intergenic 45.0%
GCAACTACATGCTTCCTTGA+AGG - chr2.3:74565722-74565741 None:intergenic 45.0%
GCTATGTTGTAACTCCCAGA+TGG - chr2.3:74567283-74567302 None:intergenic 45.0%
GGCATGAACAATTACAGTGC+TGG + chr2.3:74567593-74567612 MS.gene047111:CDS 45.0%
GTCTTGGAGGAATATGTGCA+AGG + chr2.3:74565760-74565779 MS.gene047111:CDS 45.0%
TAACCTGTTTCAGGGACACA+GGG - chr2.3:74565826-74565845 None:intergenic 45.0%
TGCACATATTCCTCCAAGAC+TGG - chr2.3:74565760-74565779 None:intergenic 45.0%
TGGGAGTTACAACATAGCTC+AGG + chr2.3:74567285-74567304 MS.gene047111:CDS 45.0%
TTCTGCCCATATATGTCCTC+CGG + chr2.3:74567207-74567226 MS.gene047111:CDS 45.0%
! AAGCAGCTTTGACACCAAGT+TGG + chr2.3:74567831-74567850 MS.gene047111:CDS 45.0%
! ACATATATGGGCAGAAGTGC+AGG - chr2.3:74567203-74567222 None:intergenic 45.0%
! CATATATGGGCAGAAGTGCA+GGG - chr2.3:74567202-74567221 None:intergenic 45.0%
! CGTGACGTTCGTGATAGTTT+TGG + chr2.3:74565512-74565531 MS.gene047111:CDS 45.0%
! GTGAGAATACTTGGCCTTCA+AGG + chr2.3:74565705-74565724 MS.gene047111:CDS 45.0%
! TGCTGGTGCCTTAATTTTCG+GGG + chr2.3:74567610-74567629 MS.gene047111:CDS 45.0%
!! GTAAGCGAAGAGTGTTTACC+AGG - chr2.3:74566045-74566064 None:intergenic 45.0%
!! GTGCTGGTGCCTTAATTTTC+GGG + chr2.3:74567609-74567628 MS.gene047111:CDS 45.0%
!! GTTCGTTTCACTTTTCAGCC+AGG + chr2.3:74565940-74565959 MS.gene047111:intron 45.0%
!! TTAGTTTGCCGCAGAACTCT+GGG - chr2.3:74565799-74565818 None:intergenic 45.0%
!!! AGTGCACGGTTTTCTGAGAT+CGG + chr2.3:74567502-74567521 MS.gene047111:CDS 45.0%
AATTCAGCACTTGATGCGGG+CGG + chr2.3:74567379-74567398 MS.gene047111:CDS 50.0%
AGAGCTAATTCACCGTTCCC+TGG + chr2.3:74567420-74567439 MS.gene047111:CDS 50.0%
AGGGAACGGTGAATTAGCTC+TGG - chr2.3:74567421-74567440 None:intergenic 50.0%
AGTCCCCGGAGGACATATAT+GGG - chr2.3:74567215-74567234 None:intergenic 50.0%
ATATATGTCCTCCGGGGACT+GGG + chr2.3:74567215-74567234 MS.gene047111:CDS 50.0%
ATCCATTATGTCGGAGGGCA+AGG + chr2.3:74566392-74566411 MS.gene047111:intron 50.0%
ATTCCCTGTGTCCCTGAAAC+AGG + chr2.3:74565820-74565839 MS.gene047111:CDS 50.0%
CAATCGAGTTCAGCAGTGCA+CGG + chr2.3:74567488-74567507 MS.gene047111:CDS 50.0%
CTAAATGTGCTCGGAACTCG+AGG + chr2.3:74567319-74567338 MS.gene047111:CDS 50.0%
CTAACCTGTTTCAGGGACAC+AGG - chr2.3:74565827-74565846 None:intergenic 50.0%
CTATACCTTTGTCTGAGCCC+TGG + chr2.3:74566024-74566043 MS.gene047111:CDS 50.0%
CTCAGTGTAGGTTGTTCTCC+TGG - chr2.3:74566607-74566626 None:intergenic 50.0%
CTTCTGTTTGCCAGTCTTGG+AGG + chr2.3:74565747-74565766 MS.gene047111:CDS 50.0%
GCCGTCATCATCCTCATTAC+AGG - chr2.3:74567533-74567552 None:intergenic 50.0%
GCTTACGCCTAGTTACCTAG+TGG + chr2.3:74566059-74566078 MS.gene047111:intron 50.0%
GTGCTTCTGTTTGCCAGTCT+TGG + chr2.3:74565744-74565763 MS.gene047111:CDS 50.0%
GTTAAGAGCCCAGAGTTCTG+CGG + chr2.3:74565788-74565807 MS.gene047111:CDS 50.0%
GTTTACCAGGGCTCAGACAA+AGG - chr2.3:74566032-74566051 None:intergenic 50.0%
TAACTCCCAGATGGGACCTT+TGG - chr2.3:74567274-74567293 None:intergenic 50.0%
TATCGCCAAAGGTCCCATCT+GGG + chr2.3:74567266-74567285 MS.gene047111:CDS 50.0%
TCTGCCCATATATGTCCTCC+GGG + chr2.3:74567208-74567227 MS.gene047111:CDS 50.0%
TGACGGCAAGATGAGACCTT+TGG + chr2.3:74567546-74567565 MS.gene047111:CDS 50.0%
TGATGTCATTCGGCGACTAG+AGG + chr2.3:74565679-74565698 MS.gene047111:CDS 50.0%
TTATCATGTTCGGGTGGTGC+TGG - chr2.3:74567718-74567737 None:intergenic 50.0%
! CAGGGCTCAGACAAAGGTAT+AGG - chr2.3:74566026-74566045 None:intergenic 50.0%
!! CCCGCATCAAGTGCTGAATT+TGG - chr2.3:74567379-74567398 None:intergenic 50.0%
!! GTGAATTAGCTCTGGCTGTC+CGG - chr2.3:74567413-74567432 None:intergenic 50.0%
!! GTTAGTTTGCCGCAGAACTC+TGG - chr2.3:74565800-74565819 None:intergenic 50.0%
!! TGAATTAGCTCTGGCTGTCC+GGG - chr2.3:74567412-74567431 None:intergenic 50.0%
!!! GTGCACGGTTTTCTGAGATC+GGG + chr2.3:74567503-74567522 MS.gene047111:CDS 50.0%
!!! TGCACGGTTTTCTGAGATCG+GGG + chr2.3:74567504-74567523 MS.gene047111:CDS 50.0%
AGCCTTGCCCTCCGACATAA+TGG - chr2.3:74566397-74566416 None:intergenic 55.0%
CAGTCCCCGGAGGACATATA+TGG - chr2.3:74567216-74567235 None:intergenic 55.0%
CATATATGTCCTCCGGGGAC+TGG + chr2.3:74567214-74567233 MS.gene047111:CDS 55.0%
CTGCCCATATATGTCCTCCG+GGG + chr2.3:74567209-74567228 MS.gene047111:CDS 55.0%
GATCGGGGGATCCTGTAATG+AGG + chr2.3:74567519-74567538 MS.gene047111:CDS 55.0%
GCTAATTCACCGTTCCCTGG+AGG + chr2.3:74567423-74567442 MS.gene047111:CDS 55.0%
GTATCGCCAAAGGTCCCATC+TGG + chr2.3:74567265-74567284 MS.gene047111:CDS 55.0%
TCCTCTCTGCTAAGAGGACC+AGG + chr2.3:74566586-74566605 MS.gene047111:CDS 55.0%
TCCTGGTCCTCTTAGCAGAG+AGG - chr2.3:74566590-74566609 None:intergenic 55.0%
TGGTCCTCTTAGCAGAGAGG+AGG - chr2.3:74566587-74566606 None:intergenic 55.0%
TGTCGGAGGGCAAGGCTTAA+TGG + chr2.3:74566400-74566419 MS.gene047111:intron 55.0%
! ATATGGGCAGAAGTGCAGGG+AGG - chr2.3:74567199-74567218 None:intergenic 55.0%
!! GGTGCTGGTTGAGATGGTGT+CGG - chr2.3:74567703-74567722 None:intergenic 55.0%
!!! GCACGGTTTTCTGAGATCGG+GGG + chr2.3:74567505-74567524 MS.gene047111:CDS 55.0%
ATGATTCCGTCTCGTGGCCC+TGG - chr2.3:74565961-74565980 None:intergenic 60.0%
CTTCCACCCAACCACCTGCT+GGG + chr2.3:74567674-74567693 MS.gene047111:CDS 60.0%
GGAACGAGTCCTCCAGGGAA+CGG - chr2.3:74567435-74567454 None:intergenic 60.0%
GTTCCCTGGAGGACTCGTTC+CGG + chr2.3:74567434-74567453 MS.gene047111:CDS 60.0%
TTCCACCCAACCACCTGCTG+GGG + chr2.3:74567675-74567694 MS.gene047111:CDS 60.0%
TTTCAGCCAGGGCCACGAGA+CGG + chr2.3:74565952-74565971 MS.gene047111:intron 60.0%
!! TAGCTCTGGCTGTCCGGGAA+CGG - chr2.3:74567407-74567426 None:intergenic 60.0%
!! TCGGGTGGTGCTGGTTGAGA+TGG - chr2.3:74567709-74567728 None:intergenic 60.0%
GCTCCGGAACGAGTCCTCCA+GGG - chr2.3:74567440-74567459 None:intergenic 65.0%
GCTTCCACCCAACCACCTGC+TGG + chr2.3:74567673-74567692 MS.gene047111:CDS 65.0%
TGCTCCGGAACGAGTCCTCC+AGG - chr2.3:74567441-74567460 None:intergenic 65.0%
TGCTCGGAACTCGAGGCCCA+AGG + chr2.3:74567326-74567345 MS.gene047111:CDS 65.0%
CGGCTCGTCTTCCCAGTCCC+CGG - chr2.3:74567229-74567248 None:intergenic 70.0%
CTCGTCTTCCCAGTCCCCGG+AGG - chr2.3:74567226-74567245 None:intergenic 70.0%
CGCCCCAGCAGGTGGTTGGG+TGG - chr2.3:74567680-74567699 None:intergenic 75.0%
CGGCGCCCCAGCAGGTGGTT+GGG - chr2.3:74567683-74567702 None:intergenic 75.0%
GATGCGGGCGGCTCCGTTCC+CGG + chr2.3:74567391-74567410 MS.gene047111:CDS 75.0%
TCGGCGCCCCAGCAGGTGGT+TGG - chr2.3:74567684-74567703 None:intergenic 75.0%
!! GATGGTGTCGGCGCCCCAGC+AGG - chr2.3:74567691-74567710 None:intergenic 75.0%
!!! GGTGTCGGCGCCCCAGCAGG+TGG - chr2.3:74567688-74567707 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 74565491 74567864 74565491 ID=MS.gene047111
chr2.3 mRNA 74565491 74567864 74565491 ID=MS.gene047111.t1;Parent=MS.gene047111
chr2.3 exon 74565491 74565841 74565491 ID=MS.gene047111.t1.exon1;Parent=MS.gene047111.t1
chr2.3 CDS 74565491 74565841 74565491 ID=cds.MS.gene047111.t1;Parent=MS.gene047111.t1
chr2.3 exon 74565958 74566045 74565958 ID=MS.gene047111.t1.exon2;Parent=MS.gene047111.t1
chr2.3 CDS 74565958 74566045 74565958 ID=cds.MS.gene047111.t1;Parent=MS.gene047111.t1
chr2.3 exon 74566559 74566691 74566559 ID=MS.gene047111.t1.exon3;Parent=MS.gene047111.t1
chr2.3 CDS 74566559 74566691 74566559 ID=cds.MS.gene047111.t1;Parent=MS.gene047111.t1
chr2.3 exon 74567153 74567864 74567153 ID=MS.gene047111.t1.exon4;Parent=MS.gene047111.t1
chr2.3 CDS 74567153 74567864 74567153 ID=cds.MS.gene047111.t1;Parent=MS.gene047111.t1
Gene Sequence

>MS.gene047111

ATGTCTTTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCATCATCATAGAGGAAAGTCTCATGGTTCTGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAATTACTATTTGATGTCATTCGGCGACTAGAGGAGAGTGAGAATACTTGGCCTTCAAGGAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCAGAGTTCTGCGGCAAACTAACATTCCCTGTGTCCCTGAAACAGGTTAGTTGCAGATTATCTCACTTTTTATTTATTAAGAATCAATTACATTTATGTTGAAATAACAACAATAGTTAAGGTAGCAACATGCTGACTTTGTCGTTCGTTTCACTTTTCAGCCAGGGCCACGAGACGGAATCATTCAATGCTTTATCAAAAGGGATAAATCTAACTTAACATATCACCTATACCTTTGTCTGAGCCCTGGTAAACACTCTTCGCTTACGCCTAGTTACCTAGTGGGTATATATGGTTTTATGTTCAGATGCTTCTGGTGTGATTGTGTAAATTTGTTCTTATGTAATGTTTCAAAATTTAAGCAGTTTAGGTTTTTTAAGTTACTGCTATATGAATATTTGTGCATGTGTTGTTTGTCGCTGCACGTGAAGATGTATGCATCGATGTTTAATTTGAGATCTACTTTGGATGACACTTGTAATAGTGTGACTTGTGCCGATGCATAAAAATGAGATGTTTCTATAACCGTTGTCATTCCATGAATATTTATTTCCCTTTGTGATTGATTCTAGGAGTCTTGGATATTCTGTTTGATATCCATTATGTCGGAGGGCAAGGCTTAATGGTCTATTTTGTCGTTTTATATTAATTATTTTAGCAACATTACTTCTAAAGTTTTGATGCTAGGGAAGTTGTCTACAGCATCTTGAACTCATTTTAGTTTTGTTCCTGCTTCAATTTTATTTACTTTGACTTTTGCAGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACCAGGAGAACAACCTACACTGAGTATGTTATTTCAATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGGTAAATTTACTACTTGCAAATGTTGATCCTTCTCTCATCTACTATGTTAAAAACTTCTTTTCGGTGTCTATAAAAATATACTGTTAAAACTACTATGAATTATGATTCCGAGTTTCCGACTATCAAAACGCATTTTAACTCCCAAAAGTAAAACAGAAGAATCAATGATCTCGCAAAGTTGCAATGAATTTCAGTTGGTTTATGATTAAGTACTTCTTTTATCGTCATATGTTTAGGTGCACGAAATTATAATTATACAAAAATGTGTTGTAACTGTTATTATCGGAGGTAATAAATAGTCTAGGGTTCTTTATTCCATAAATAATTTTCCACTTATGTGATGCTGATATTCCTTGTTTGCTATTCATATCTTCAAGACCATTTGCTGAGTTTTTTCTGTTCTATTTTATATCTATGTCTTCTCACTTGCAAGATTATTTGTTATTATTTTGATACACCAGATCAAACTTTCTTGGAACAAAGTTCATCATATATGATACACAGCCTCCCTGCACTTCTGCCCATATATGTCCTCCGGGGACTGGGAAGACGAGCCGTAGATTTTCTAAAAAGGTATCGCCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGAACTCGAGGCCCAAGGAAGATGCATTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAGCTAATTCACCGTTCCCTGGAGGACTCGTTCCGGAGCATCTCATTTTCGAAGTCTCTAGATCATTCAATCGAGTTCAGCAGTGCACGGTTTTCTGAGATCGGGGGATCCTGTAATGAGGATGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAATTTTCGGGGACGAGTAACTGTTGCATCTGTTAAAAACTTTCAGCTGATTGCTTCCACCCAACCACCTGCTGGGGCGCCGACACCATCTCAACCAGCACCACCCGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAGTTGGCTTGTGAATAG
Protein sequence

>MS.gene047111.t1

MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE