Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047193.t1 | XP_003592973.1 | 77.2 | 452 | 11 | 2 | 1 | 361 | 1 | 451 | 1.10E-191 | 679.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047193.t1 | Q84WU6 | 38.5 | 382 | 180 | 10 | 10 | 347 | 16 | 386 | 1.2e-64 | 248.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047193.t1 | G7INP6 | 77.2 | 452 | 11 | 2 | 1 | 361 | 1 | 451 | 8.2e-192 | 679.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene047193.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047193.t1 | MTR_2g006270 | 96.165 | 339 | 12 | 1 | 1 | 339 | 1 | 338 | 0.0 | 679 |
MS.gene047193.t1 | MTR_2g006380 | 71.014 | 345 | 84 | 6 | 7 | 346 | 14 | 347 | 2.24e-173 | 490 |
MS.gene047193.t1 | MTR_5g061220 | 50.411 | 365 | 141 | 9 | 7 | 339 | 13 | 369 | 9.70e-112 | 336 |
MS.gene047193.t1 | MTR_2g024430 | 51.765 | 340 | 148 | 7 | 6 | 339 | 13 | 342 | 4.71e-109 | 328 |
MS.gene047193.t1 | MTR_1g058210 | 51.906 | 341 | 152 | 6 | 6 | 339 | 5 | 340 | 3.30e-108 | 325 |
MS.gene047193.t1 | MTR_5g040880 | 48.830 | 342 | 161 | 6 | 3 | 339 | 1 | 333 | 2.21e-102 | 312 |
MS.gene047193.t1 | MTR_5g040740 | 43.584 | 413 | 168 | 10 | 5 | 362 | 4 | 406 | 8.98e-97 | 294 |
MS.gene047193.t1 | MTR_5g082140 | 47.246 | 345 | 162 | 8 | 5 | 339 | 4 | 338 | 9.39e-94 | 288 |
MS.gene047193.t1 | MTR_5g060780 | 44.011 | 359 | 172 | 12 | 7 | 351 | 6 | 349 | 2.94e-90 | 276 |
MS.gene047193.t1 | MTR_5g061890 | 45.087 | 346 | 161 | 12 | 7 | 338 | 6 | 336 | 2.64e-89 | 274 |
MS.gene047193.t1 | MTR_5g460920 | 44.011 | 359 | 172 | 12 | 7 | 351 | 6 | 349 | 6.48e-89 | 273 |
MS.gene047193.t1 | MTR_3g073420 | 40.526 | 380 | 173 | 10 | 5 | 339 | 11 | 382 | 3.73e-85 | 269 |
MS.gene047193.t1 | MTR_5g060630 | 43.617 | 376 | 160 | 13 | 6 | 338 | 5 | 371 | 3.04e-81 | 257 |
MS.gene047193.t1 | MTR_5g460740 | 43.617 | 376 | 160 | 13 | 6 | 338 | 5 | 371 | 3.04e-81 | 257 |
MS.gene047193.t1 | MTR_2g094570 | 39.314 | 379 | 168 | 10 | 12 | 339 | 10 | 377 | 1.40e-79 | 256 |
MS.gene047193.t1 | MTR_2g094570 | 39.314 | 379 | 168 | 10 | 12 | 339 | 10 | 377 | 2.22e-79 | 257 |
MS.gene047193.t1 | MTR_2g094570 | 39.314 | 379 | 168 | 10 | 12 | 339 | 66 | 433 | 5.74e-79 | 257 |
MS.gene047193.t1 | MTR_4g058930 | 36.224 | 392 | 184 | 9 | 4 | 339 | 3 | 384 | 1.12e-74 | 244 |
MS.gene047193.t1 | MTR_4g058930 | 36.224 | 392 | 184 | 9 | 4 | 339 | 3 | 384 | 1.69e-74 | 244 |
MS.gene047193.t1 | MTR_1g064430 | 35.233 | 386 | 182 | 10 | 12 | 339 | 26 | 401 | 1.28e-72 | 239 |
MS.gene047193.t1 | MTR_1g094960 | 37.598 | 383 | 181 | 12 | 13 | 347 | 19 | 391 | 1.37e-72 | 237 |
MS.gene047193.t1 | MTR_1g064430 | 35.233 | 386 | 182 | 10 | 12 | 339 | 39 | 414 | 1.59e-72 | 239 |
MS.gene047193.t1 | MTR_7g101280 | 35.459 | 392 | 180 | 13 | 10 | 339 | 28 | 408 | 7.82e-66 | 220 |
MS.gene047193.t1 | MTR_0041s0110 | 35.459 | 392 | 180 | 13 | 10 | 339 | 28 | 408 | 7.82e-66 | 220 |
MS.gene047193.t1 | MTR_7g101275 | 38.801 | 317 | 163 | 12 | 23 | 321 | 2 | 305 | 3.07e-58 | 194 |
MS.gene047193.t1 | MTR_5g062970 | 49.268 | 205 | 93 | 4 | 13 | 214 | 38 | 234 | 9.62e-57 | 185 |
MS.gene047193.t1 | MTR_0041s0120 | 35.168 | 327 | 173 | 11 | 23 | 321 | 2 | 317 | 9.99e-52 | 177 |
MS.gene047193.t1 | MTR_8g100050 | 33.433 | 335 | 211 | 5 | 13 | 337 | 59 | 391 | 1.23e-48 | 174 |
MS.gene047193.t1 | MTR_8g100050 | 34.125 | 337 | 206 | 7 | 13 | 337 | 59 | 391 | 3.02e-48 | 174 |
MS.gene047193.t1 | MTR_4g124900 | 33.144 | 353 | 211 | 10 | 10 | 347 | 20 | 362 | 5.57e-48 | 174 |
MS.gene047193.t1 | MTR_4g124900 | 33.144 | 353 | 211 | 10 | 10 | 347 | 20 | 362 | 6.08e-48 | 174 |
MS.gene047193.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 8.86e-48 | 171 |
MS.gene047193.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 1.75e-47 | 171 |
MS.gene047193.t1 | MTR_2g043250 | 32.464 | 345 | 211 | 9 | 10 | 339 | 20 | 357 | 4.90e-47 | 171 |
MS.gene047193.t1 | MTR_8g079492 | 33.333 | 342 | 207 | 8 | 13 | 339 | 23 | 358 | 2.71e-46 | 169 |
MS.gene047193.t1 | MTR_8g079492 | 33.333 | 342 | 207 | 8 | 13 | 339 | 23 | 358 | 2.82e-46 | 169 |
MS.gene047193.t1 | MTR_3g064050 | 32.448 | 339 | 215 | 6 | 13 | 339 | 26 | 362 | 7.76e-46 | 167 |
MS.gene047193.t1 | MTR_5g076270 | 32.164 | 342 | 212 | 7 | 13 | 339 | 24 | 360 | 1.83e-45 | 166 |
MS.gene047193.t1 | MTR_2g018690 | 32.456 | 342 | 211 | 7 | 13 | 339 | 23 | 359 | 2.20e-45 | 166 |
MS.gene047193.t1 | MTR_1g024025 | 33.628 | 339 | 206 | 9 | 13 | 337 | 43 | 376 | 2.34e-45 | 167 |
MS.gene047193.t1 | MTR_2g005240 | 33.236 | 343 | 204 | 9 | 13 | 339 | 23 | 356 | 4.12e-45 | 164 |
MS.gene047193.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 4.20e-44 | 162 |
MS.gene047193.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 5.93e-44 | 161 |
MS.gene047193.t1 | MTR_8g101360 | 32.571 | 350 | 216 | 10 | 5 | 339 | 23 | 367 | 2.72e-43 | 160 |
MS.gene047193.t1 | MTR_4g021580 | 30.682 | 352 | 223 | 9 | 13 | 352 | 19 | 361 | 6.27e-42 | 155 |
MS.gene047193.t1 | MTR_4g021580 | 30.682 | 352 | 223 | 9 | 13 | 352 | 19 | 361 | 8.83e-42 | 155 |
MS.gene047193.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 2.19e-41 | 154 |
MS.gene047193.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 2.57e-41 | 154 |
MS.gene047193.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 3.31e-41 | 154 |
MS.gene047193.t1 | MTR_8g027440 | 31.065 | 338 | 212 | 9 | 13 | 337 | 29 | 358 | 3.82e-40 | 150 |
MS.gene047193.t1 | MTR_7g062540 | 29.888 | 358 | 217 | 10 | 13 | 346 | 14 | 361 | 2.71e-39 | 148 |
MS.gene047193.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 4.11e-38 | 145 |
MS.gene047193.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 4.80e-38 | 145 |
MS.gene047193.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 5.42e-38 | 145 |
MS.gene047193.t1 | MTR_4g060460 | 30.114 | 352 | 220 | 9 | 13 | 342 | 54 | 401 | 2.40e-37 | 143 |
MS.gene047193.t1 | MTR_4g060460 | 30.114 | 352 | 220 | 9 | 13 | 342 | 54 | 401 | 2.45e-37 | 143 |
MS.gene047193.t1 | MTR_8g079492 | 32.975 | 279 | 167 | 7 | 76 | 339 | 3 | 276 | 1.78e-34 | 135 |
MS.gene047193.t1 | MTR_5g046120 | 58.333 | 120 | 40 | 6 | 51 | 165 | 9 | 123 | 6.35e-33 | 120 |
MS.gene047193.t1 | MTR_5g060770 | 35.461 | 282 | 119 | 12 | 66 | 337 | 8 | 236 | 1.96e-32 | 124 |
MS.gene047193.t1 | MTR_8g446900 | 28.975 | 283 | 181 | 8 | 67 | 337 | 14 | 288 | 4.18e-27 | 110 |
MS.gene047193.t1 | MTR_2g093740 | 32.189 | 233 | 144 | 5 | 117 | 337 | 38 | 268 | 1.68e-26 | 111 |
MS.gene047193.t1 | MTR_2g093740 | 32.189 | 233 | 144 | 5 | 117 | 337 | 38 | 268 | 1.97e-26 | 111 |
MS.gene047193.t1 | MTR_2g093740 | 30.488 | 246 | 144 | 6 | 117 | 337 | 38 | 281 | 2.51e-23 | 102 |
MS.gene047193.t1 | MTR_2g093740 | 30.488 | 246 | 144 | 6 | 117 | 337 | 38 | 281 | 2.58e-23 | 101 |
MS.gene047193.t1 | MTR_5g062960 | 44.186 | 129 | 54 | 6 | 239 | 357 | 1 | 121 | 6.10e-23 | 95.5 |
MS.gene047193.t1 | MTR_5g460910 | 30.272 | 294 | 117 | 14 | 56 | 337 | 14 | 231 | 2.24e-19 | 88.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047193.t1 | AT1G77850 | 37.192 | 406 | 185 | 11 | 10 | 356 | 16 | 410 | 5.57e-83 | 263 |
MS.gene047193.t1 | AT1G77850 | 37.192 | 406 | 185 | 11 | 10 | 356 | 16 | 410 | 8.65e-83 | 263 |
MS.gene047193.t1 | AT4G30080 | 36.951 | 387 | 178 | 11 | 12 | 347 | 18 | 389 | 8.52e-73 | 239 |
MS.gene047193.t1 | AT2G28350 | 35.556 | 405 | 188 | 12 | 5 | 351 | 2 | 391 | 1.74e-70 | 233 |
MS.gene047193.t1 | AT2G28350 | 35.556 | 405 | 188 | 12 | 5 | 351 | 2 | 391 | 1.96e-70 | 233 |
MS.gene047193.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.73e-50 | 179 |
MS.gene047193.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.93e-50 | 178 |
MS.gene047193.t1 | AT5G37020 | 32.448 | 339 | 215 | 6 | 13 | 339 | 22 | 358 | 1.22e-47 | 172 |
MS.gene047193.t1 | AT5G37020 | 32.448 | 339 | 215 | 6 | 13 | 339 | 22 | 358 | 1.86e-47 | 172 |
MS.gene047193.t1 | AT2G33860 | 31.988 | 347 | 202 | 9 | 13 | 337 | 54 | 388 | 2.83e-47 | 169 |
MS.gene047193.t1 | AT1G34310 | 32.861 | 353 | 206 | 9 | 8 | 344 | 22 | 359 | 9.92e-47 | 167 |
MS.gene047193.t1 | AT5G20730 | 32.386 | 352 | 217 | 8 | 3 | 339 | 14 | 359 | 1.22e-46 | 171 |
MS.gene047193.t1 | AT5G20730 | 32.386 | 352 | 217 | 8 | 3 | 339 | 14 | 359 | 1.36e-46 | 170 |
MS.gene047193.t1 | AT2G46530 | 32.164 | 342 | 211 | 8 | 13 | 341 | 21 | 354 | 2.50e-46 | 167 |
MS.gene047193.t1 | AT2G46530 | 32.164 | 342 | 211 | 8 | 13 | 341 | 42 | 375 | 2.62e-46 | 167 |
MS.gene047193.t1 | AT5G20730 | 32.386 | 352 | 216 | 9 | 3 | 339 | 14 | 358 | 5.93e-46 | 168 |
MS.gene047193.t1 | AT1G35520 | 31.667 | 360 | 227 | 8 | 3 | 352 | 17 | 367 | 1.31e-45 | 165 |
MS.gene047193.t1 | AT1G30330 | 33.041 | 342 | 209 | 8 | 13 | 339 | 25 | 361 | 2.96e-45 | 166 |
MS.gene047193.t1 | AT1G30330 | 33.041 | 342 | 209 | 8 | 13 | 339 | 25 | 361 | 2.96e-45 | 166 |
MS.gene047193.t1 | AT1G30330 | 33.041 | 342 | 209 | 8 | 13 | 339 | 23 | 359 | 2.98e-45 | 166 |
MS.gene047193.t1 | AT1G34390 | 32.295 | 353 | 206 | 10 | 8 | 344 | 22 | 357 | 3.36e-45 | 164 |
MS.gene047193.t1 | AT1G19850 | 34.302 | 344 | 204 | 10 | 10 | 337 | 40 | 377 | 8.41e-45 | 165 |
MS.gene047193.t1 | AT1G19850 | 34.393 | 346 | 201 | 11 | 10 | 337 | 51 | 388 | 8.69e-45 | 165 |
MS.gene047193.t1 | AT3G61830 | 31.672 | 341 | 206 | 8 | 13 | 337 | 25 | 354 | 9.21e-45 | 162 |
MS.gene047193.t1 | AT5G62000 | 34.218 | 339 | 203 | 9 | 13 | 337 | 61 | 393 | 1.54e-44 | 164 |
MS.gene047193.t1 | AT5G62000 | 34.218 | 339 | 203 | 9 | 13 | 337 | 61 | 393 | 1.54e-44 | 164 |
MS.gene047193.t1 | AT5G62000 | 34.218 | 339 | 203 | 9 | 13 | 337 | 61 | 393 | 1.54e-44 | 164 |
MS.gene047193.t1 | AT5G62000 | 34.218 | 339 | 203 | 9 | 13 | 337 | 61 | 393 | 1.54e-44 | 164 |
MS.gene047193.t1 | AT5G62000 | 34.218 | 339 | 203 | 9 | 13 | 337 | 61 | 393 | 1.61e-44 | 164 |
MS.gene047193.t1 | AT5G60450 | 31.476 | 359 | 220 | 8 | 8 | 344 | 36 | 390 | 1.75e-44 | 163 |
MS.gene047193.t1 | AT5G60450 | 31.653 | 357 | 212 | 9 | 13 | 344 | 65 | 414 | 3.02e-44 | 163 |
MS.gene047193.t1 | AT1G35540 | 32.370 | 346 | 211 | 10 | 8 | 341 | 22 | 356 | 1.25e-43 | 159 |
MS.gene047193.t1 | AT1G19220 | 30.791 | 354 | 220 | 10 | 4 | 341 | 16 | 360 | 1.98e-43 | 161 |
MS.gene047193.t1 | AT1G34410 | 31.268 | 355 | 225 | 8 | 8 | 352 | 22 | 367 | 7.33e-43 | 157 |
MS.gene047193.t1 | AT1G35240 | 32.353 | 340 | 211 | 8 | 8 | 337 | 22 | 352 | 7.54e-43 | 157 |
MS.gene047193.t1 | AT1G34170 | 29.867 | 375 | 241 | 10 | 1 | 363 | 13 | 377 | 3.28e-41 | 151 |
MS.gene047193.t1 | AT1G59750 | 31.792 | 346 | 214 | 10 | 13 | 345 | 22 | 358 | 4.65e-40 | 150 |
MS.gene047193.t1 | AT1G59750 | 31.792 | 346 | 214 | 10 | 13 | 345 | 22 | 358 | 5.36e-40 | 150 |
MS.gene047193.t1 | AT1G59750 | 31.792 | 346 | 214 | 10 | 13 | 345 | 22 | 358 | 5.75e-40 | 150 |
MS.gene047193.t1 | AT1G59750 | 31.792 | 346 | 214 | 10 | 13 | 345 | 22 | 358 | 5.75e-40 | 150 |
MS.gene047193.t1 | AT1G34170 | 29.459 | 370 | 223 | 9 | 1 | 363 | 13 | 351 | 1.11e-38 | 144 |
MS.gene047193.t1 | AT1G34170 | 29.459 | 370 | 223 | 9 | 1 | 363 | 13 | 351 | 2.77e-38 | 144 |
MS.gene047193.t1 | AT3G61830 | 31.359 | 287 | 170 | 8 | 67 | 337 | 28 | 303 | 1.13e-31 | 125 |
MS.gene047193.t1 | AT2G33860 | 32.479 | 234 | 141 | 6 | 117 | 337 | 2 | 231 | 1.56e-30 | 121 |
MS.gene047193.t1 | AT1G43950 | 34.259 | 216 | 121 | 5 | 8 | 217 | 22 | 222 | 2.35e-30 | 115 |
MS.gene047193.t1 | AT5G37020 | 33.617 | 235 | 142 | 6 | 117 | 339 | 31 | 263 | 2.70e-30 | 122 |
MS.gene047193.t1 | AT2G46530 | 32.773 | 238 | 146 | 6 | 114 | 341 | 34 | 267 | 3.93e-29 | 118 |
Find 91 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCGTACTTCTAATTTA+TGG | 0.108193 | 2.2:+73363257 | MS.gene047193:CDS |
TTTGAATATCGTAGGTTAAT+TGG | 0.128409 | 2.2:+73364646 | MS.gene047193:intron |
GCACATGTGTGCCAAATTTC+TGG | 0.215696 | 2.2:-73362377 | None:intergenic |
CGCATGTGCGTCCAGAAATT+TGG | 0.217939 | 2.2:+73362366 | MS.gene047193:CDS |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2.2:-73363187 | None:intergenic |
GATTGGCAACCTCTTCTTTA+GGG | 0.275578 | 2.2:-73362643 | None:intergenic |
AGATTGGCAACCTCTTCTTT+AGG | 0.275924 | 2.2:-73362644 | None:intergenic |
TAATTTATGGCGCATGCTTC+AGG | 0.288610 | 2.2:+73363270 | MS.gene047193:CDS |
ATAGAGATTGTCCCTTGATA+TGG | 0.294890 | 2.2:-73363232 | None:intergenic |
AGATGGACATCGTTGGTTAT+TGG | 0.309930 | 2.2:-73362614 | None:intergenic |
TTGAATATCGTAGGTTAATT+GGG | 0.314702 | 2.2:+73364647 | MS.gene047193:intron |
CTGTTCGTTACCGACGTTCA+TGG | 0.320691 | 2.2:+73362812 | MS.gene047193:CDS |
TTCATCGCGGTTGTTGAGAT+TGG | 0.361556 | 2.2:-73362660 | None:intergenic |
TAAACTCTTGAATGCAACTT+TGG | 0.370692 | 2.2:-73362419 | None:intergenic |
GATATATAACATGTTTCTCT+TGG | 0.384809 | 2.2:-73362873 | None:intergenic |
AATGGAATTCCTTTGTTAAG+AGG | 0.404581 | 2.2:+73362900 | MS.gene047193:CDS |
TCAACGGGAAAGTTATTTGT+TGG | 0.427846 | 2.2:+73362965 | MS.gene047193:CDS |
CAACGGGAAAGTTATTTGTT+GGG | 0.431447 | 2.2:+73362966 | MS.gene047193:CDS |
GCAGTTTGTTGCAGCGGCGG+CGG | 0.440577 | 2.2:+73363003 | MS.gene047193:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2.2:+73363039 | MS.gene047193:CDS |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2.2:-73363186 | None:intergenic |
ATGAATCAATGAAGATTCAA+TGG | 0.450458 | 2.2:+73363161 | MS.gene047193:CDS |
TGAGTCTTTCATGAAAATAA+CGG | 0.452973 | 2.2:-73362945 | None:intergenic |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2.2:+73363206 | MS.gene047193:CDS |
CAGGTGTTGAGACGAGGATT+CGG | 0.457588 | 2.2:-73362792 | None:intergenic |
TTGGGATGAATTTCAAGTCT+CGG | 0.458166 | 2.2:+73364665 | MS.gene047193:CDS |
ACTATCCTCGAGGGGATGAT+TGG | 0.466368 | 2.2:+73363107 | MS.gene047193:CDS |
AGTCAACCCGTGGTGGGTTG+AGG | 0.468552 | 2.2:+73364701 | MS.gene047193:CDS |
CACGCAGTTTGTTGCAGCGG+CGG | 0.472211 | 2.2:+73363000 | MS.gene047193:CDS |
CATGAACGTCGGTAACGAAC+AGG | 0.475779 | 2.2:-73362811 | None:intergenic |
ATATATAACATGTTTCTCTT+GGG | 0.481990 | 2.2:-73362872 | None:intergenic |
TAGAGATTGTCCCTTGATAT+GGG | 0.482488 | 2.2:-73363231 | None:intergenic |
AAAAGAGTGTGTGTGGGTAA+TGG | 0.489755 | 2.2:-73362492 | None:intergenic |
TCTCATATCAAGGGAGATGA+TGG | 0.490070 | 2.2:+73365065 | MS.gene047193:CDS |
CACCACGGGTTGACTCGTCT+TGG | 0.505317 | 2.2:-73364693 | None:intergenic |
TGCCGATCCTCACACGGATG+AGG | 0.509768 | 2.2:+73362568 | MS.gene047193:CDS |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2.2:+73363220 | MS.gene047193:CDS |
AGTTATTTGTTGGGATTCGC+AGG | 0.513561 | 2.2:+73362975 | MS.gene047193:CDS |
AAGCCGCGGGAAGACATTAT+CGG | 0.516617 | 2.2:-73362759 | None:intergenic |
AGTAATGGAGGCATTGAAGT+TGG | 0.517015 | 2.2:+73363054 | MS.gene047193:CDS |
GACCTCATCCGTGTGAGGAT+CGG | 0.528604 | 2.2:-73362570 | None:intergenic |
TTTCACAATTCTCATATCAA+GGG | 0.529587 | 2.2:+73365056 | MS.gene047193:CDS |
ACATGTTATATATCTCTGAA+TGG | 0.530162 | 2.2:+73362882 | MS.gene047193:CDS |
AGCGGCGGCGGAGCAGAAGA+AGG | 0.532222 | 2.2:+73363015 | MS.gene047193:CDS |
AAGAGGAAGAAACTCGTGGC+TGG | 0.538632 | 2.2:+73362917 | MS.gene047193:CDS |
GGAGCAGAAGAAGGATGAGT+TGG | 0.543711 | 2.2:+73363024 | MS.gene047193:CDS |
TGGGAAACCCGCGGCAGACA+TGG | 0.563883 | 2.2:-73362853 | None:intergenic |
AAATTGTTTACTATCCTCGA+GGG | 0.568194 | 2.2:+73363098 | MS.gene047193:CDS |
CGGCACAAAAGCGAGGTATG+TGG | 0.571206 | 2.2:-73362739 | None:intergenic |
GAAGAAGGATGAGTTGGAGA+AGG | 0.573545 | 2.2:+73363030 | MS.gene047193:CDS |
AGAGTGTGTGTGGGTAATGG+AGG | 0.575190 | 2.2:-73362489 | None:intergenic |
GAGACGAGGATTCGGCCTCT+AGG | 0.578409 | 2.2:-73362784 | None:intergenic |
ATTTCTGGACGCACATGCGA+TGG | 0.580120 | 2.2:-73362362 | None:intergenic |
TCTTGAAAACCCTAAAGAAG+AGG | 0.581476 | 2.2:+73362634 | MS.gene047193:CDS |
TCTCCTTGCCGATCCTCACA+CGG | 0.588085 | 2.2:+73362562 | MS.gene047193:CDS |
CTTCCCGCGGCTTGACCTAG+AGG | 0.588102 | 2.2:+73362769 | MS.gene047193:CDS |
AATGGAGGCATTGAAGTTGG+CGG | 0.590740 | 2.2:+73363057 | MS.gene047193:CDS |
GAAGTTGGCGGAAGAGAACA+AGG | 0.600106 | 2.2:+73363069 | MS.gene047193:CDS |
GTTCTGATGTTAACAATGCT+CGG | 0.602948 | 2.2:+73362711 | MS.gene047193:CDS |
AAATAACCTCAACCCACCAC+GGG | 0.608942 | 2.2:-73364707 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2.2:+73363221 | MS.gene047193:CDS |
GAGACGATACAAGGAGTGAA+AGG | 0.609567 | 2.2:-73362530 | None:intergenic |
TTTGTAGAAAAGAGTGTGTG+TGG | 0.609647 | 2.2:-73362499 | None:intergenic |
GAACACGCAGTTTGTTGCAG+CGG | 0.616426 | 2.2:+73362997 | MS.gene047193:CDS |
GAGTTTCTTCCTCTTAACAA+AGG | 0.617502 | 2.2:-73362909 | None:intergenic |
CGGCCTCTAGGTCAAGCCGC+GGG | 0.620797 | 2.2:-73362772 | None:intergenic |
TCAACAGCTGAGACGATACA+AGG | 0.622390 | 2.2:-73362539 | None:intergenic |
GAAATTGTTTACTATCCTCG+AGG | 0.624214 | 2.2:+73363097 | MS.gene047193:CDS |
GTTGGAGAAGGCAGTAATGG+AGG | 0.624776 | 2.2:+73363042 | MS.gene047193:CDS |
GTAATGGAGGAAGAAGAAGA+AGG | 0.639327 | 2.2:-73362476 | None:intergenic |
AGAGTTTATTATTTCCCACA+AGG | 0.642714 | 2.2:+73362434 | MS.gene047193:CDS |
AACGAACAGGTGTTGAGACG+AGG | 0.644655 | 2.2:-73362798 | None:intergenic |
CAAGACGAGTCAACCCGTGG+TGG | 0.644679 | 2.2:+73364694 | MS.gene047193:CDS |
TTGTGAAAATTGCTTACATG+AGG | 0.646619 | 2.2:-73365041 | None:intergenic |
AAGACGAGTCAACCCGTGGT+GGG | 0.646955 | 2.2:+73364695 | MS.gene047193:CDS |
TCGGCCTCTAGGTCAAGCCG+CGG | 0.648171 | 2.2:-73362773 | None:intergenic |
GAAATAACCTCAACCCACCA+CGG | 0.649182 | 2.2:-73364708 | None:intergenic |
TGGTTGCTTCTGAACAGACA+TGG | 0.659994 | 2.2:-73362342 | None:intergenic |
TGTTTCTCTTGGGAAACCCG+CGG | 0.663878 | 2.2:-73362862 | None:intergenic |
ACAAAGACCTCATCCGTGTG+AGG | 0.664295 | 2.2:-73362575 | None:intergenic |
TGTTAAGAGGAAGAAACTCG+TGG | 0.667790 | 2.2:+73362913 | MS.gene047193:CDS |
TTCCAAGACGAGTCAACCCG+TGG | 0.669719 | 2.2:+73364691 | MS.gene047193:CDS |
ACATTATCGGCACAAAAGCG+AGG | 0.676914 | 2.2:-73362746 | None:intergenic |
TTGTAGAAAAGAGTGTGTGT+GGG | 0.681947 | 2.2:-73362498 | None:intergenic |
GTGCCGATAATGTCTTCCCG+CGG | 0.682542 | 2.2:+73362756 | MS.gene047193:CDS |
GATGATGGCTATAAGAGCTG+CGG | 0.682568 | 2.2:+73365080 | MS.gene047193:CDS |
TGAAACTTCACCATGAACGT+CGG | 0.683050 | 2.2:-73362822 | None:intergenic |
AATTGTTTACTATCCTCGAG+GGG | 0.689459 | 2.2:+73363099 | MS.gene047193:CDS |
CATCCGTGTGAGGATCGGCA+AGG | 0.710355 | 2.2:-73362565 | None:intergenic |
TCACACCAATCATCCCCTCG+AGG | 0.748749 | 2.2:-73363112 | None:intergenic |
CAAAAGAAACAACTTCATCG+CGG | 0.749390 | 2.2:-73362673 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTTCTTAAATTTATTAT+CGG | - | chr2.2:73363417-73363436 | None:intergenic | 10.0% |
!! | ACGATATTCAAATAAAAAAA+TGG | - | chr2.2:73364638-73364657 | None:intergenic | 15.0% |
!! | CGTATATTTGAATATTTAAT+TGG | + | chr2.2:73363913-73363932 | MS.gene047193:intron | 15.0% |
!! | GTAAAAAAAAATAGATGTTA+AGG | - | chr2.2:73364003-73364022 | None:intergenic | 15.0% |
!! | TAGTTACTAACATTAAAAAA+AGG | - | chr2.2:73363960-73363979 | None:intergenic | 15.0% |
!!! | AGTTCTAAATTTTTTTGTTT+GGG | - | chr2.2:73364760-73364779 | None:intergenic | 15.0% |
!!! | ATAATTTCTTTTTCTTTTCT+TGG | + | chr2.2:73363294-73363313 | MS.gene047193:intron | 15.0% |
!!! | TAGTTCTAAATTTTTTTGTT+TGG | - | chr2.2:73364761-73364780 | None:intergenic | 15.0% |
!!! | TATTTTTTTTGGTATAAATC+AGG | + | chr2.2:73363572-73363591 | MS.gene047193:intron | 15.0% |
!!! | TTTTTTTATTTGAATATCGT+AGG | + | chr2.2:73364638-73364657 | MS.gene047193:intron | 15.0% |
!!! | TTTTTTTGTGGTATTTTTTT+TGG | + | chr2.2:73363561-73363580 | MS.gene047193:intron | 15.0% |
!! | ATAGTTAAATGACTCATTAA+AGG | + | chr2.2:73364431-73364450 | MS.gene047193:intron | 20.0% |
!! | ATATATAACATGTTTCTCTT+GGG | - | chr2.2:73362875-73362894 | None:intergenic | 20.0% |
!! | TCTAATTATAGATATAGCAT+TGG | - | chr2.2:73363646-73363665 | None:intergenic | 20.0% |
!! | TTTAACTATAGATGAAACTT+TGG | - | chr2.2:73364420-73364439 | None:intergenic | 20.0% |
!!! | AGACTTTATTTGAACAATAT+TGG | + | chr2.2:73364530-73364549 | MS.gene047193:intron | 20.0% |
!!! | GTTCTAAATTTTTTTGTTTG+GGG | - | chr2.2:73364759-73364778 | None:intergenic | 20.0% |
!!! | GTTGATAAATGATTTTTTTG+TGG | + | chr2.2:73363549-73363568 | MS.gene047193:intron | 20.0% |
!!! | TTCTAAATTTTTTTGTTTGG+GGG | - | chr2.2:73364758-73364777 | None:intergenic | 20.0% |
! | AAATGAAATGCAATATCGAT+TGG | - | chr2.2:73363857-73363876 | None:intergenic | 25.0% |
! | AACACCAAAAATTATAGTGA+TGG | + | chr2.2:73364987-73365006 | MS.gene047193:intron | 25.0% |
! | ACATGTTATATATCTCTGAA+TGG | + | chr2.2:73362882-73362901 | MS.gene047193:CDS | 25.0% |
! | ATGAATCAATGAAGATTCAA+TGG | + | chr2.2:73363161-73363180 | MS.gene047193:CDS | 25.0% |
! | GATATATAACATGTTTCTCT+TGG | - | chr2.2:73362876-73362895 | None:intergenic | 25.0% |
! | GATGGTTCAATTATGTTATT+TGG | + | chr2.2:73365005-73365024 | MS.gene047193:intron | 25.0% |
! | TATCTCGTACTTCTAATTTA+TGG | + | chr2.2:73363257-73363276 | MS.gene047193:CDS | 25.0% |
! | TGAGTCTTTCATGAAAATAA+CGG | - | chr2.2:73362948-73362967 | None:intergenic | 25.0% |
! | TTGAATATCGTAGGTTAATT+GGG | + | chr2.2:73364647-73364666 | MS.gene047193:intron | 25.0% |
! | TTTCACAATTCTCATATCAA+GGG | + | chr2.2:73365056-73365075 | MS.gene047193:CDS | 25.0% |
! | TTTGAATATCGTAGGTTAAT+TGG | + | chr2.2:73364646-73364665 | MS.gene047193:intron | 25.0% |
!! | GTCATATGAGATAGATTTTA+AGG | + | chr2.2:73364464-73364483 | MS.gene047193:intron | 25.0% |
!! | TATTTTCATGAAAGACTCAA+CGG | + | chr2.2:73362949-73362968 | MS.gene047193:CDS | 25.0% |
!! | TCGGTTAATTTACCAATTTT+GGG | + | chr2.2:73364303-73364322 | MS.gene047193:intron | 25.0% |
!! | TGAACCATCACTATAATTTT+TGG | - | chr2.2:73364994-73365013 | None:intergenic | 25.0% |
!! | TTCCTTTTTATCACTTAGTT+GGG | - | chr2.2:73364796-73364815 | None:intergenic | 25.0% |
!! | TTTCCTTTTTATCACTTAGT+TGG | - | chr2.2:73364797-73364816 | None:intergenic | 25.0% |
!! | TTTTCACAATTCTCATATCA+AGG | + | chr2.2:73365055-73365074 | MS.gene047193:CDS | 25.0% |
!!! | ATGAGATAGATTTTAAGGTT+AGG | + | chr2.2:73364469-73364488 | MS.gene047193:intron | 25.0% |
!!! | TGAGATAGATTTTAAGGTTA+GGG | + | chr2.2:73364470-73364489 | MS.gene047193:intron | 25.0% |
AAATTGTTTACTATCCTCGA+GGG | + | chr2.2:73363098-73363117 | MS.gene047193:CDS | 30.0% | |
AACATTAAAAAAAGGAGCGA+CGG | - | chr2.2:73363952-73363971 | None:intergenic | 30.0% | |
AATGGAATTCCTTTGTTAAG+AGG | + | chr2.2:73362900-73362919 | MS.gene047193:CDS | 30.0% | |
ACATTGAGACTTATCCTATA+GGG | - | chr2.2:73364250-73364269 | None:intergenic | 30.0% | |
AGAGTTTATTATTTCCCACA+AGG | + | chr2.2:73362434-73362453 | MS.gene047193:CDS | 30.0% | |
ATACTAGATACTATGAAGCA+CGG | - | chr2.2:73363520-73363539 | None:intergenic | 30.0% | |
CAGAGGAGTTCAAAATAATA+TGG | - | chr2.2:73364938-73364957 | None:intergenic | 30.0% | |
CTGTAATAATCTCTCTATGT+GGG | - | chr2.2:73364075-73364094 | None:intergenic | 30.0% | |
GGTGATACTTTATCATGTAT+AGG | - | chr2.2:73364909-73364928 | None:intergenic | 30.0% | |
GTGTTTCATAGCTAGATAAT+TGG | - | chr2.2:73363342-73363361 | None:intergenic | 30.0% | |
GTTTGACATCAATGCTTATT+GGG | + | chr2.2:73364145-73364164 | MS.gene047193:intron | 30.0% | |
TAAACTCTTGAATGCAACTT+TGG | - | chr2.2:73362422-73362441 | None:intergenic | 30.0% | |
TAAATAGCAACTCCCAAAAT+TGG | - | chr2.2:73364318-73364337 | None:intergenic | 30.0% | |
TACATTGAGACTTATCCTAT+AGG | - | chr2.2:73364251-73364270 | None:intergenic | 30.0% | |
TATTAAACGTCTCCTAATGT+CGG | - | chr2.2:73363489-73363508 | None:intergenic | 30.0% | |
TCATCTTAACTCTCATTCTA+GGG | - | chr2.2:73363189-73363208 | None:intergenic | 30.0% | |
TCTGTAATAATCTCTCTATG+TGG | - | chr2.2:73364076-73364095 | None:intergenic | 30.0% | |
TGAAGACTGATAAATCTTCA+AGG | + | chr2.2:73363206-73363225 | MS.gene047193:CDS | 30.0% | |
TTCAAAATAATATGGCTGTG+AGG | - | chr2.2:73364930-73364949 | None:intergenic | 30.0% | |
TTCATCTTAACTCTCATTCT+AGG | - | chr2.2:73363190-73363209 | None:intergenic | 30.0% | |
TTGTGAAAATTGCTTACATG+AGG | - | chr2.2:73365044-73365063 | None:intergenic | 30.0% | |
TTTGAATGAGATCACTTCAA+CGG | + | chr2.2:73364845-73364864 | MS.gene047193:intron | 30.0% | |
! | ATTTTCATGAAAGACTCAAC+GGG | + | chr2.2:73362950-73362969 | MS.gene047193:CDS | 30.0% |
! | GTCGGTTAATTTACCAATTT+TGG | + | chr2.2:73364302-73364321 | MS.gene047193:intron | 30.0% |
! | TCATAAAACCTCGTTTGTTT+TGG | + | chr2.2:73364104-73364123 | MS.gene047193:intron | 30.0% |
!! | AAAACAAACGAGGTTTTATG+AGG | - | chr2.2:73364105-73364124 | None:intergenic | 30.0% |
!! | AATAAGCATTGATGTCAAAC+GGG | - | chr2.2:73364145-73364164 | None:intergenic | 30.0% |
!! | CAATAAGCATTGATGTCAAA+CGG | - | chr2.2:73364146-73364165 | None:intergenic | 30.0% |
!!! | AATTTTTTTGTTTGGGGGAA+TGG | - | chr2.2:73364753-73364772 | None:intergenic | 30.0% |
!!! | ATGCAACTTTGGAATTTTGA+CGG | - | chr2.2:73362411-73362430 | None:intergenic | 30.0% |
AATTGTTTACTATCCTCGAG+GGG | + | chr2.2:73363099-73363118 | MS.gene047193:CDS | 35.0% | |
ATAGAGATTGTCCCTTGATA+TGG | - | chr2.2:73363235-73363254 | None:intergenic | 35.0% | |
CAAAAGAAACAACTTCATCG+CGG | - | chr2.2:73362676-73362695 | None:intergenic | 35.0% | |
CAACGGGAAAGTTATTTGTT+GGG | + | chr2.2:73362966-73362985 | MS.gene047193:CDS | 35.0% | |
CGTTTGACATCAATGCTTAT+TGG | + | chr2.2:73364144-73364163 | MS.gene047193:intron | 35.0% | |
GAAATTGTTTACTATCCTCG+AGG | + | chr2.2:73363097-73363116 | MS.gene047193:CDS | 35.0% | |
GAGAACAAGTATGTTACTGT+CGG | + | chr2.2:73364284-73364303 | MS.gene047193:intron | 35.0% | |
GAGTTTCTTCCTCTTAACAA+AGG | - | chr2.2:73362912-73362931 | None:intergenic | 35.0% | |
GTTCTGATGTTAACAATGCT+CGG | + | chr2.2:73362711-73362730 | MS.gene047193:CDS | 35.0% | |
TAGAGATTGTCCCTTGATAT+GGG | - | chr2.2:73363234-73363253 | None:intergenic | 35.0% | |
TCAAAGAGCAGTAACTAACT+AGG | - | chr2.2:73364194-73364213 | None:intergenic | 35.0% | |
TCAACGGGAAAGTTATTTGT+TGG | + | chr2.2:73362965-73362984 | MS.gene047193:CDS | 35.0% | |
TCTTGAAAACCCTAAAGAAG+AGG | + | chr2.2:73362634-73362653 | MS.gene047193:CDS | 35.0% | |
TGAACAATATTGGTGCATTG+TGG | + | chr2.2:73364540-73364559 | MS.gene047193:intron | 35.0% | |
TGCCCAACTAAGTGATAAAA+AGG | + | chr2.2:73364791-73364810 | MS.gene047193:intron | 35.0% | |
TTCAGTAGAATCGTATGTGT+CGG | + | chr2.2:73363443-73363462 | MS.gene047193:intron | 35.0% | |
! | TCAAACGGGTATTTTCATTG+TGG | - | chr2.2:73364131-73364150 | None:intergenic | 35.0% |
! | TGATTGGTGTGATTTTGTAG+TGG | + | chr2.2:73363123-73363142 | MS.gene047193:CDS | 35.0% |
! | TGCAATATCGATTGGTGTAA+TGG | - | chr2.2:73363849-73363868 | None:intergenic | 35.0% |
! | TTGGGATGAATTTCAAGTCT+CGG | + | chr2.2:73364665-73364684 | MS.gene047193:CDS | 35.0% |
! | TTGTAGAAAAGAGTGTGTGT+GGG | - | chr2.2:73362501-73362520 | None:intergenic | 35.0% |
! | TTTGTAGAAAAGAGTGTGTG+TGG | - | chr2.2:73362502-73362521 | None:intergenic | 35.0% |
!!! | CTTCTTTAGGGTTTTCAAGA+TGG | - | chr2.2:73362634-73362653 | None:intergenic | 35.0% |
AACACACTCACAAACACACA+CGG | + | chr2.2:73363357-73363376 | MS.gene047193:intron | 40.0% | |
AATGAGATCACTTCAACGGA+AGG | + | chr2.2:73364849-73364868 | MS.gene047193:intron | 40.0% | |
ACATCCTCACTCTTGCAAAA+AGG | - | chr2.2:73363789-73363808 | None:intergenic | 40.0% | |
AGATTGGCAACCTCTTCTTT+AGG | - | chr2.2:73362647-73362666 | None:intergenic | 40.0% | |
ATGAGATCACTTCAACGGAA+GGG | + | chr2.2:73364850-73364869 | MS.gene047193:intron | 40.0% | |
ATTGTGGACCAAAACAAACG+AGG | - | chr2.2:73364115-73364134 | None:intergenic | 40.0% | |
CTAACTAGGATCGTCTCTAA+TGG | - | chr2.2:73364180-73364199 | None:intergenic | 40.0% | |
CTTCAAGGATCCCATATCAA+GGG | + | chr2.2:73363221-73363240 | MS.gene047193:CDS | 40.0% | |
GATTGGCAACCTCTTCTTTA+GGG | - | chr2.2:73362646-73362665 | None:intergenic | 40.0% | |
TAATTTATGGCGCATGCTTC+AGG | + | chr2.2:73363270-73363289 | MS.gene047193:CDS | 40.0% | |
TATATTGCTTCGTGCCCTAT+AGG | + | chr2.2:73364233-73364252 | MS.gene047193:intron | 40.0% | |
TATTGGTGCATTGTGGCTAA+TGG | + | chr2.2:73364547-73364566 | MS.gene047193:intron | 40.0% | |
TCTCATATCAAGGGAGATGA+TGG | + | chr2.2:73365065-73365084 | MS.gene047193:CDS | 40.0% | |
TCTTCAAGGATCCCATATCA+AGG | + | chr2.2:73363220-73363239 | MS.gene047193:CDS | 40.0% | |
TGAAACTTCACCATGAACGT+CGG | - | chr2.2:73362825-73362844 | None:intergenic | 40.0% | |
TGTTAAGAGGAAGAAACTCG+TGG | + | chr2.2:73362913-73362932 | MS.gene047193:CDS | 40.0% | |
! | AAAAGAGTGTGTGTGGGTAA+TGG | - | chr2.2:73362495-73362514 | None:intergenic | 40.0% |
! | AGATGGACATCGTTGGTTAT+TGG | - | chr2.2:73362617-73362636 | None:intergenic | 40.0% |
! | AGTTATTTGTTGGGATTCGC+AGG | + | chr2.2:73362975-73362994 | MS.gene047193:CDS | 40.0% |
! | GCATTGTGGCTAATGGTTTT+GGG | + | chr2.2:73364554-73364573 | MS.gene047193:intron | 40.0% |
! | GTAATGGAGGAAGAAGAAGA+AGG | - | chr2.2:73362479-73362498 | None:intergenic | 40.0% |
! | TGCATTGTGGCTAATGGTTT+TGG | + | chr2.2:73364553-73364572 | MS.gene047193:intron | 40.0% |
! | TTTTTGCAAGAGTGAGGATG+TGG | + | chr2.2:73363788-73363807 | MS.gene047193:intron | 40.0% |
!! | AGTAATGGAGGCATTGAAGT+TGG | + | chr2.2:73363054-73363073 | MS.gene047193:CDS | 40.0% |
!! | CAAACGAGGTTTTATGAGGA+AGG | - | chr2.2:73364101-73364120 | None:intergenic | 40.0% |
!! | GTTTTCAAGATGGACATCGT+TGG | - | chr2.2:73362624-73362643 | None:intergenic | 40.0% |
!! | TGGTGTGATTTTGTAGTGGA+TGG | + | chr2.2:73363127-73363146 | MS.gene047193:CDS | 40.0% |
!!! | AAGAAGGAGAAGCGTTTTCT+AGG | - | chr2.2:73362463-73362482 | None:intergenic | 40.0% |
AAATAACCTCAACCCACCAC+GGG | - | chr2.2:73364710-73364729 | None:intergenic | 45.0% | |
ACATTATCGGCACAAAAGCG+AGG | - | chr2.2:73362749-73362768 | None:intergenic | 45.0% | |
CCTCACTCTTGCAAAAAGGT+AGG | - | chr2.2:73363785-73363804 | None:intergenic | 45.0% | |
CGAAGGAAACTTTGTCTCAG+AGG | - | chr2.2:73364955-73364974 | None:intergenic | 45.0% | |
GAAATAACCTCAACCCACCA+CGG | - | chr2.2:73364711-73364730 | None:intergenic | 45.0% | |
GAGACGATACAAGGAGTGAA+AGG | - | chr2.2:73362533-73362552 | None:intergenic | 45.0% | |
GCACATGTGTGCCAAATTTC+TGG | - | chr2.2:73362380-73362399 | None:intergenic | 45.0% | |
GTGTTGCAATTGTGAGTCGA+AGG | - | chr2.2:73364972-73364991 | None:intergenic | 45.0% | |
TCAACAGCTGAGACGATACA+AGG | - | chr2.2:73362542-73362561 | None:intergenic | 45.0% | |
TCCTAATGTCGGACACACAT+CGG | - | chr2.2:73363478-73363497 | None:intergenic | 45.0% | |
TTCATCGCGGTTGTTGAGAT+TGG | - | chr2.2:73362663-73362682 | None:intergenic | 45.0% | |
! | AAGTTTTACCATGTCTGCCG+CGG | + | chr2.2:73362845-73362864 | MS.gene047193:CDS | 45.0% |
! | CCTACCTTTTTGCAAGAGTG+AGG | + | chr2.2:73363782-73363801 | MS.gene047193:intron | 45.0% |
! | CGTTTTCTAGGTGACCTTGT+GGG | - | chr2.2:73362451-73362470 | None:intergenic | 45.0% |
! | GAAGAAGGATGAGTTGGAGA+AGG | + | chr2.2:73363030-73363049 | MS.gene047193:CDS | 45.0% |
! | GATGATGGCTATAAGAGCTG+CGG | + | chr2.2:73365080-73365099 | MS.gene047193:CDS | 45.0% |
! | TGAGTTGGAGAAGGCAGTAA+TGG | + | chr2.2:73363039-73363058 | MS.gene047193:CDS | 45.0% |
!! | AATGGAGGCATTGAAGTTGG+CGG | + | chr2.2:73363057-73363076 | MS.gene047193:CDS | 45.0% |
!!! | CTTTGGAATTTTGACGGCAG+CGG | - | chr2.2:73362405-73362424 | None:intergenic | 45.0% |
!!! | ATATTTTAATATATCAATAA+TGG | + | chr2.2:73364045-73364064 | MS.gene047193:intron | 5.0% |
!!! | TATTTTAATATATCAATAAT+GGG | + | chr2.2:73364046-73364065 | MS.gene047193:intron | 5.0% |
AAGAGGAAGAAACTCGTGGC+TGG | + | chr2.2:73362917-73362936 | MS.gene047193:CDS | 50.0% | |
AAGCCGCGGGAAGACATTAT+CGG | - | chr2.2:73362762-73362781 | None:intergenic | 50.0% | |
ACAAAGACCTCATCCGTGTG+AGG | - | chr2.2:73362578-73362597 | None:intergenic | 50.0% | |
ACCGATGTGTGTCCGACATT+AGG | + | chr2.2:73363474-73363493 | MS.gene047193:intron | 50.0% | |
ACTATCCTCGAGGGGATGAT+TGG | + | chr2.2:73363107-73363126 | MS.gene047193:CDS | 50.0% | |
CATGAACGTCGGTAACGAAC+AGG | - | chr2.2:73362814-73362833 | None:intergenic | 50.0% | |
CGCATGTGCGTCCAGAAATT+TGG | + | chr2.2:73362366-73362385 | MS.gene047193:CDS | 50.0% | |
CTGTTCGTTACCGACGTTCA+TGG | + | chr2.2:73362812-73362831 | MS.gene047193:CDS | 50.0% | |
GAAGTTGGCGGAAGAGAACA+AGG | + | chr2.2:73363069-73363088 | MS.gene047193:CDS | 50.0% | |
GGAGCAGAAGAAGGATGAGT+TGG | + | chr2.2:73363024-73363043 | MS.gene047193:CDS | 50.0% | |
GTTGGAGAAGGCAGTAATGG+AGG | + | chr2.2:73363042-73363061 | MS.gene047193:CDS | 50.0% | |
TGTTTCTCTTGGGAAACCCG+CGG | - | chr2.2:73362865-73362884 | None:intergenic | 50.0% | |
TTTGTTTGGGGGAATGGCGT+CGG | - | chr2.2:73364747-73364766 | None:intergenic | 50.0% | |
! | AGAGTGTGTGTGGGTAATGG+AGG | - | chr2.2:73362492-73362511 | None:intergenic | 50.0% |
! | AGTTTTACCATGTCTGCCGC+GGG | + | chr2.2:73362846-73362865 | MS.gene047193:CDS | 50.0% |
! | ATTTCTGGACGCACATGCGA+TGG | - | chr2.2:73362365-73362384 | None:intergenic | 50.0% |
! | GCGTTTTCTAGGTGACCTTG+TGG | - | chr2.2:73362452-73362471 | None:intergenic | 50.0% |
!! | AACGAACAGGTGTTGAGACG+AGG | - | chr2.2:73362801-73362820 | None:intergenic | 50.0% |
!! | CAGGTGTTGAGACGAGGATT+CGG | - | chr2.2:73362795-73362814 | None:intergenic | 50.0% |
!! | GAACACGCAGTTTGTTGCAG+CGG | + | chr2.2:73362997-73363016 | MS.gene047193:CDS | 50.0% |
AAGACGAGTCAACCCGTGGT+GGG | + | chr2.2:73364695-73364714 | MS.gene047193:CDS | 55.0% | |
CGGCACAAAAGCGAGGTATG+TGG | - | chr2.2:73362742-73362761 | None:intergenic | 55.0% | |
GACCTCATCCGTGTGAGGAT+CGG | - | chr2.2:73362573-73362592 | None:intergenic | 55.0% | |
TCACACCAATCATCCCCTCG+AGG | - | chr2.2:73363115-73363134 | None:intergenic | 55.0% | |
TCTCCTTGCCGATCCTCACA+CGG | + | chr2.2:73362562-73362581 | MS.gene047193:CDS | 55.0% | |
TTCCAAGACGAGTCAACCCG+TGG | + | chr2.2:73364691-73364710 | MS.gene047193:CDS | 55.0% | |
! | GTGCCGATAATGTCTTCCCG+CGG | + | chr2.2:73362756-73362775 | MS.gene047193:CDS | 55.0% |
CAAGACGAGTCAACCCGTGG+TGG | + | chr2.2:73364694-73364713 | MS.gene047193:CDS | 60.0% | |
CATCCGTGTGAGGATCGGCA+AGG | - | chr2.2:73362568-73362587 | None:intergenic | 60.0% | |
GAGACGAGGATTCGGCCTCT+AGG | - | chr2.2:73362787-73362806 | None:intergenic | 60.0% | |
TGCCGATCCTCACACGGATG+AGG | + | chr2.2:73362568-73362587 | MS.gene047193:CDS | 60.0% | |
!! | AGTCAACCCGTGGTGGGTTG+AGG | + | chr2.2:73364701-73364720 | MS.gene047193:CDS | 60.0% |
!! | CACCACGGGTTGACTCGTCT+TGG | - | chr2.2:73364696-73364715 | None:intergenic | 60.0% |
!! | CACGCAGTTTGTTGCAGCGG+CGG | + | chr2.2:73363000-73363019 | MS.gene047193:CDS | 60.0% |
CTTCCCGCGGCTTGACCTAG+AGG | + | chr2.2:73362769-73362788 | MS.gene047193:CDS | 65.0% | |
TCGGCCTCTAGGTCAAGCCG+CGG | - | chr2.2:73362776-73362795 | None:intergenic | 65.0% | |
TGGGAAACCCGCGGCAGACA+TGG | - | chr2.2:73362856-73362875 | None:intergenic | 65.0% | |
!! | GCAGTTTGTTGCAGCGGCGG+CGG | + | chr2.2:73363003-73363022 | MS.gene047193:CDS | 65.0% |
AGCGGCGGCGGAGCAGAAGA+AGG | + | chr2.2:73363015-73363034 | MS.gene047193:CDS | 70.0% | |
CGGCCTCTAGGTCAAGCCGC+GGG | - | chr2.2:73362775-73362794 | None:intergenic | 70.0% | |
! | TGGGGGAATGGCGTCGGAGC+AGG | - | chr2.2:73364741-73364760 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 73362344 | 73365115 | 73362344 | ID=MS.gene047193 |
chr2.2 | mRNA | 73362344 | 73365115 | 73362344 | ID=MS.gene047193.t1;Parent=MS.gene047193 |
chr2.2 | exon | 73362344 | 73363291 | 73362344 | ID=MS.gene047193.t1.exon1;Parent=MS.gene047193.t1 |
chr2.2 | CDS | 73362344 | 73363291 | 73362344 | ID=cds.MS.gene047193.t1;Parent=MS.gene047193.t1 |
chr2.2 | exon | 73364660 | 73364722 | 73364660 | ID=MS.gene047193.t1.exon2;Parent=MS.gene047193.t1 |
chr2.2 | CDS | 73364660 | 73364722 | 73364660 | ID=cds.MS.gene047193.t1;Parent=MS.gene047193.t1 |
chr2.2 | exon | 73365032 | 73365115 | 73365032 | ID=MS.gene047193.t1.exon3;Parent=MS.gene047193.t1 |
chr2.2 | CDS | 73365032 | 73365115 | 73365032 | ID=cds.MS.gene047193.t1;Parent=MS.gene047193.t1 |
Gene Sequence |
Protein sequence |