AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047202.t1 MTR_2g006150 91.363 521 11 10 1 521 1 487 0.0 916
MS.gene047202.t1 MTR_2g006150 93.763 465 8 9 1 465 1 444 0.0 844
MS.gene047202.t1 MTR_5g039600 92.045 88 6 1 131 217 61 148 2.69e-49 175
MS.gene047202.t1 MTR_4g108370 65.909 132 33 4 77 205 44 166 9.94e-44 160
MS.gene047202.t1 MTR_7g028160 53.289 152 61 3 108 255 21 166 3.04e-39 144
MS.gene047202.t1 MTR_1g114380 80.488 82 13 1 127 208 27 105 6.33e-38 140
MS.gene047202.t1 MTR_1g101810 56.303 119 48 1 106 224 38 152 1.40e-36 139
MS.gene047202.t1 MTR_1g101810 56.303 119 48 1 106 224 68 182 4.34e-36 138
MS.gene047202.t1 MTR_1g038650 75.000 84 18 1 121 204 20 100 1.52e-35 133
MS.gene047202.t1 MTR_8g033070 78.947 76 16 0 133 208 77 152 2.83e-35 135
MS.gene047202.t1 MTR_1g063870 80.282 71 14 0 128 198 41 111 1.15e-34 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047202.t1 AT1G58100 44.563 469 156 18 77 521 13 401 8.51e-81 258
MS.gene047202.t1 AT1G35560 42.899 338 94 10 133 464 52 296 3.28e-59 199
MS.gene047202.t1 AT1G58100 39.872 469 154 20 77 521 13 377 3.59e-57 195
MS.gene047202.t1 AT1G72010 40.268 298 105 9 125 399 52 299 7.10e-48 170
MS.gene047202.t1 AT1G69690 58.710 155 41 4 131 275 46 187 1.67e-41 152
MS.gene047202.t1 AT3G47620 82.353 85 13 1 123 205 102 186 2.12e-40 152
MS.gene047202.t1 AT5G23280 77.108 83 16 1 126 208 32 111 5.15e-37 137
MS.gene047202.t1 AT2G45680 57.600 125 41 3 90 213 39 152 5.07e-36 137
MS.gene047202.t1 AT5G08330 68.750 96 27 1 111 206 9 101 9.99e-36 134
MS.gene047202.t1 AT3G27010 53.600 125 42 2 73 197 31 139 7.86e-35 133
MS.gene047202.t1 AT3G27010 53.600 125 42 2 73 197 31 139 7.86e-35 133
MS.gene047202.t1 AT5G51910 78.205 78 16 1 132 208 52 129 8.92e-34 130
MS.gene047202.t1 AT5G51910 78.205 78 16 1 132 208 52 129 8.92e-34 130
MS.gene047202.t1 AT2G37000 80.000 60 12 0 136 195 43 102 3.63e-27 108
MS.gene047202.t1 AT5G41030 51.546 97 35 1 133 229 65 149 1.70e-26 108
MS.gene047202.t1 AT3G45150 61.905 63 24 0 133 195 14 76 1.32e-21 92.0

Find 150 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGCCATCACCTTTCATTA+TGG 0.235639 2.2:+73431013 MS.gene047202:CDS
CTTGTTGTTGGTGGTGGGGA+TGG 0.241546 2.2:-73430935 None:intergenic
AGGTTCAATGTTCCAGCTTC+TGG 0.242129 2.2:+73432139 MS.gene047202:CDS
GTTTGAAGAAGGTTGAATAT+TGG 0.260266 2.2:-73431045 None:intergenic
TTGAAGAAAATGGTTGAATT+TGG 0.273936 2.2:-73431214 None:intergenic
TCACCAACAACAGGATGATA+TGG 0.275830 2.2:+73431823 MS.gene047202:CDS
TTGTTGTTGGTGGTGGGGAT+GGG 0.292871 2.2:-73430934 None:intergenic
TTCCAGTTGACCAGAGAATT+AGG 0.308053 2.2:+73431356 MS.gene047202:CDS
GATAGTCATTGTGAGGTATT+AGG 0.316778 2.2:-73432424 None:intergenic
GACGGTGGTGGAGGAGGTGG+TGG 0.325996 2.2:+73431854 MS.gene047202:CDS
AATTTGGTTGTTGTTGTTGT+TGG 0.326907 2.2:-73431198 None:intergenic
GACTGAACATGAGGTGTAAA+AGG 0.331793 2.2:-73432061 None:intergenic
ATGATTCTTGTTGTTGGTGG+TGG 0.333014 2.2:-73430941 None:intergenic
CGGGGAGTGGAAGTACAATT+TGG 0.342926 2.2:+73431966 MS.gene047202:CDS
TACCAACACGCGCCTCTGTT+AGG 0.343048 2.2:+73431599 MS.gene047202:CDS
TCTTCTCCACTCTCATCATT+AGG 0.347346 2.2:-73432397 None:intergenic
TGTTGTTGGTGGTGGGGATG+GGG 0.348885 2.2:-73430933 None:intergenic
CGCCCATATCATCCTGTTGT+TGG 0.355044 2.2:-73431826 None:intergenic
AGGCCATCACCTTTCATTAT+GGG 0.359459 2.2:+73431014 MS.gene047202:CDS
GTGGGGATGGGGATGAATAT+TGG 0.363141 2.2:-73430922 None:intergenic
GTTGTTGCTGTTGTTGTTGT+TGG 0.364428 2.2:-73431643 None:intergenic
GAAGGTGACGGTGGTGGAGG+AGG 0.367290 2.2:+73431848 MS.gene047202:CDS
GGCTGGGATTGTTCCGGTGC+CGG 0.367521 2.2:-73431447 None:intergenic
CTGTCCTTGGTGGATCGTTT+TGG 0.369093 2.2:-73431269 None:intergenic
TGGACGTGGTGGTTTACAAT+TGG 0.382459 2.2:+73432192 MS.gene047202:CDS
TGATTCTTGTTGTTGGTGGT+GGG 0.388715 2.2:-73430940 None:intergenic
GTATCAACCATCACAGCATT+TGG 0.390115 2.2:+73432222 MS.gene047202:CDS
GCGGTTGAAGTTGAAGAAAA+TGG 0.393103 2.2:-73431224 None:intergenic
GGCCTAATTCTCTGGTCAAC+TGG 0.396838 2.2:-73431358 None:intergenic
GTAGCCCACATGGCTGTTGC+CGG 0.398412 2.2:-73431941 None:intergenic
GGATTTGTGGCCTAATTCTC+TGG 0.401966 2.2:-73431366 None:intergenic
GATTCTTGTTGTTGGTGGTG+GGG 0.404293 2.2:-73430939 None:intergenic
GGTGGTGGAGGAGGTGGTGG+TGG 0.404546 2.2:+73431857 MS.gene047202:CDS
GTGAGGATGATTCTTGTTGT+TGG 0.411900 2.2:-73430947 None:intergenic
TTGTTTCACCATCGGATTTG+TGG 0.412133 2.2:-73431379 None:intergenic
TCAACATCATTCAATGTCAT+TGG 0.413791 2.2:+73432348 MS.gene047202:CDS
CCACTCTCATCATTAGGTTG+AGG 0.418843 2.2:-73432391 None:intergenic
GGTGACGGTGGTGGAGGAGG+TGG 0.419720 2.2:+73431851 MS.gene047202:CDS
TATCAACCATCACAGCATTT+GGG 0.420346 2.2:+73432223 MS.gene047202:CDS
GGACGTGGTGGTTTACAATT+GGG 0.421245 2.2:+73432193 MS.gene047202:CDS
TTGTTGTTGTTGGATACATC+TGG 0.423257 2.2:-73431188 None:intergenic
GACGTTGAGCGTTGAGAAAT+TGG 0.424642 2.2:-73431468 None:intergenic
CCAGCTTCTGGTGGTGGTGG+TGG 0.427315 2.2:+73432151 MS.gene047202:CDS
AAGAGTTGTTAACGTTGAAA+TGG 0.427409 2.2:-73432309 None:intergenic
GCTGTTGTTGTTGTTGGTGG+TGG 0.434485 2.2:-73431637 None:intergenic
GAGGGAGAAGAGTTTGAAGA+AGG 0.435751 2.2:-73431056 None:intergenic
GGTGGTGGTGTTGAATTTCA+AGG 0.437658 2.2:+73432169 MS.gene047202:CDS
CAGATCTGGTGGCAATTGCC+AGG 0.437859 2.2:-73431154 None:intergenic
TCATCATTAGGTTGAGGTTG+AGG 0.438959 2.2:-73432385 None:intergenic
CTGATGAACGCTGATCAAAT+TGG 0.440741 2.2:+73431668 MS.gene047202:CDS
GGGATGGGGATGAATATTGG+TGG 0.440791 2.2:-73430919 None:intergenic
GAAATTGGCTGGGATTGTTC+CGG 0.446496 2.2:-73431453 None:intergenic
GGCGAAGGTGACGGTGGTGG+AGG 0.448389 2.2:+73431845 MS.gene047202:CDS
GGCTGTATCTGATTCCAACT+TGG 0.449042 2.2:+73432249 MS.gene047202:CDS
ACAGCCATGTGGGCTACAGC+GGG 0.455998 2.2:+73431947 MS.gene047202:CDS
ACCAACACGCGCCTCTGTTA+GGG 0.456330 2.2:+73431600 MS.gene047202:CDS
GGAGCTTCTTCTTCTTCTGT+AGG 0.458812 2.2:+73431878 MS.gene047202:CDS
GGTGATGGCCTTCCATCAAA+AGG 0.462353 2.2:-73431002 None:intergenic
AATGTTCCAGCTTCTGGTGG+TGG 0.463360 2.2:+73432145 MS.gene047202:CDS
CAAAACAAATCACCAACAAC+AGG 0.468328 2.2:+73431814 MS.gene047202:CDS
CTCAGTTACATTTCATGCCA+AGG 0.474185 2.2:+73432119 MS.gene047202:CDS
CCATTCAATTGTTTCACCAT+CGG 0.476071 2.2:-73431387 None:intergenic
TTGAGCGTTGAGAAATTGGC+TGG 0.476634 2.2:-73431464 None:intergenic
ACACCTCATTGATGCTTCCC+TGG 0.479655 2.2:+73431136 MS.gene047202:CDS
GCTTCTTCAACAAGCGGAGC+CGG 0.481221 2.2:+73431409 MS.gene047202:CDS
TCGACCGTCAAATATGTTAC+CGG 0.485929 2.2:+73431922 MS.gene047202:CDS
ATCATCGCTGCCACCGGCAC+CGG 0.486326 2.2:+73431434 MS.gene047202:CDS
ATGGGCGAAGGTGACGGTGG+TGG 0.487166 2.2:+73431842 MS.gene047202:CDS
GTTGCTGTTGTTGTTGTTGG+TGG 0.491277 2.2:-73431640 None:intergenic
AGGATGATTCTTGTTGTTGG+TGG 0.493938 2.2:-73430944 None:intergenic
ATGTGGGCTACAGCGGGGAG+TGG 0.494234 2.2:+73431953 MS.gene047202:CDS
GCTGTATCTGATTCCAACTT+GGG 0.503244 2.2:+73432250 MS.gene047202:CDS
AGGATTTGCAACCGCGGTGA+CGG 0.503756 2.2:-73431246 None:intergenic
ACGAGAATTACATGAGAAAA+CGG 0.506668 2.2:+73431705 MS.gene047202:CDS
CTTAATGCTTATACAAGAGC+TGG 0.507717 2.2:+73432286 MS.gene047202:CDS
CATGTTCAGTCTCAAAATCA+AGG 0.508213 2.2:+73432073 MS.gene047202:CDS
AGCAGCAAACATACCCAAGT+TGG 0.510675 2.2:-73432263 None:intergenic
ACCATCACAGCATTTGGGAT+TGG 0.511721 2.2:+73432228 MS.gene047202:CDS
GTTCCAGCTTCTGGTGGTGG+TGG 0.513092 2.2:+73432148 MS.gene047202:CDS
CCGGCGATCATCGCTGCCAC+CGG 0.513461 2.2:+73431428 MS.gene047202:CDS
CAAAAGTTGACGGCCGTGGC+CGG 0.517328 2.2:+73431297 MS.gene047202:CDS
CCGGTGGCAGCGATGATCGC+CGG 0.518014 2.2:-73431428 None:intergenic
CAAAATGAAAGTGGCGGTGA+TGG 0.520198 2.2:+73431764 MS.gene047202:CDS
TGGTACGCAGCTTCTTCGTA+AGG 0.525067 2.2:-73431581 None:intergenic
TTCAATGTTCCAGCTTCTGG+TGG 0.527514 2.2:+73432142 MS.gene047202:CDS
CACCAACAACAGGATGATAT+GGG 0.530307 2.2:+73431824 MS.gene047202:CDS
CCGATGGTGAAACAATTGAA+TGG 0.532182 2.2:+73431387 MS.gene047202:CDS
GCATTCGAATTCTCCGGCCA+CGG 0.535337 2.2:-73431310 None:intergenic
TGCTGATGATGAGAATTTGA+AGG 0.536098 2.2:-73430969 None:intergenic
TCGCCGGCATTCGAATTCTC+CGG 0.537835 2.2:-73431316 None:intergenic
AACAACAATCAAAATGAAAG+TGG 0.537872 2.2:+73431755 MS.gene047202:CDS
CACACAAAAGTTGACGGCCG+TGG 0.538934 2.2:+73431293 MS.gene047202:CDS
TGGAAGAGGAGGTTCAGATC+TGG 0.540562 2.2:-73431168 None:intergenic
TGTTGTTGGTGGTGGTGATG+AGG 0.542903 2.2:-73431629 None:intergenic
ACAGTGTAGAGCCGCTGCTA+CGG 0.544103 2.2:-73431496 None:intergenic
AGAAGGTTGAATATTGGAGA+TGG 0.548864 2.2:-73431039 None:intergenic
GACAGGCACACAAAAGTTGA+CGG 0.553080 2.2:+73431287 MS.gene047202:CDS
TTGTTGGATACATCTGGAAG+AGG 0.554700 2.2:-73431182 None:intergenic
ACTCCCCGCTGTAGCCCACA+TGG 0.560090 2.2:-73431951 None:intergenic
GTGATGGCCTTCCATCAAAA+GGG 0.560570 2.2:-73431001 None:intergenic
AACAGCCATGTGGGCTACAG+CGG 0.560758 2.2:+73431946 MS.gene047202:CDS
GTTGCCGGTAACATATTTGA+CGG 0.564703 2.2:-73431926 None:intergenic
CAAAACGATCCACCAAGGAC+AGG 0.572544 2.2:+73431270 MS.gene047202:CDS
GATGATATGGGCGAAGGTGA+CGG 0.576236 2.2:+73431836 MS.gene047202:CDS
TGGGATTGTTCCGGTGCCGG+TGG 0.577716 2.2:-73431444 None:intergenic
ATTTGCAACCGCGGTGACGG+CGG 0.577827 2.2:-73431243 None:intergenic
GTTGAATTTCAAGGTGGACG+TGG 0.582295 2.2:+73432178 MS.gene047202:CDS
ACTCTTGCTGCACATGTCGC+CGG 0.582995 2.2:-73431332 None:intergenic
ACCCTAACAGAGGCGCGTGT+TGG 0.587028 2.2:-73431601 None:intergenic
GTTGCAGCACCACCACTCAC+TGG 0.588807 2.2:-73431995 None:intergenic
TTCTCATCATCAGCAGCTTG+TGG 0.593589 2.2:+73430977 MS.gene047202:CDS
TGGCCGGAGAATTCGAATGC+CGG 0.599117 2.2:+73431313 MS.gene047202:CDS
GAGATGGAGCCCATAATGAA+AGG 0.601517 2.2:-73431023 None:intergenic
GAGCCCATAATGAAAGGTGA+TGG 0.605278 2.2:-73431017 None:intergenic
TTGGATACATCTGGAAGAGG+AGG 0.605386 2.2:-73431179 None:intergenic
TGAATGGCTTCTTCAACAAG+CGG 0.607294 2.2:+73431403 MS.gene047202:CDS
ATGATGAGAATTTGAAGGTG+AGG 0.608155 2.2:-73430964 None:intergenic
GCCAATCCCAAATGCTGTGA+TGG 0.613902 2.2:-73432229 None:intergenic
GAAGCTGGAACATTGAACCT+TGG 0.618817 2.2:-73432136 None:intergenic
GGCATGAAATGTAACTGAGA+CGG 0.621928 2.2:-73432115 None:intergenic
GAGTGGAAGTACAATTTGGA+TGG 0.623430 2.2:+73431970 MS.gene047202:CDS
CAAAACAACAAGCAGAAGAG+AGG 0.623869 2.2:+73430894 MS.gene047202:CDS
GATATGGGCGAAGGTGACGG+TGG 0.625298 2.2:+73431839 MS.gene047202:CDS
AGATCTGGTGGCAATTGCCA+GGG 0.625421 2.2:-73431153 None:intergenic
CCTCAACCTAATGATGAGAG+TGG 0.625980 2.2:+73432391 MS.gene047202:CDS
CAACAGGATGATATGGGCGA+AGG 0.628122 2.2:+73431830 MS.gene047202:CDS
AACTTCAACCGCCGTCACCG+CGG 0.629301 2.2:+73431235 MS.gene047202:CDS
GAAAGTGGCGGTGATGGTGA+TGG 0.632003 2.2:+73431770 MS.gene047202:CDS
AAGAGGAGGTTCAGATCTGG+TGG 0.633145 2.2:-73431165 None:intergenic
AACGTCTCACTCCGTAGCAG+CGG 0.639266 2.2:+73431485 MS.gene047202:CDS
TGAGCGTTGAGAAATTGGCT+GGG 0.640396 2.2:-73431463 None:intergenic
GAATTAGGCCACAAATCCGA+TGG 0.643115 2.2:+73431371 MS.gene047202:CDS
AGCATCAATGAGGTGTTGAG+TGG 0.643841 2.2:-73431129 None:intergenic
CTGAGAGGAGCTGATTTCGA+CGG 0.644392 2.2:-73431527 None:intergenic
AACAATCAAAATGAAAGTGG+CGG 0.649002 2.2:+73431758 MS.gene047202:CDS
GCATCAATGAGGTGTTGAGT+GGG 0.650961 2.2:-73431128 None:intergenic
GTTACCGGCAACAGCCATGT+GGG 0.654057 2.2:+73431937 MS.gene047202:CDS
TGTTACCGGCAACAGCCATG+TGG 0.658913 2.2:+73431936 MS.gene047202:CDS
GGTAGTAGATAGTCATTGTG+AGG 0.659915 2.2:-73432431 None:intergenic
GAATTTCAAGGTGGACGTGG+TGG 0.660159 2.2:+73432181 MS.gene047202:CDS
TCCTCCAAAACGATCCACCA+AGG 0.665860 2.2:+73431265 MS.gene047202:CDS
CAGCCATGTGGGCTACAGCG+GGG 0.667527 2.2:+73431948 MS.gene047202:CDS
AGAGGAGCTGATTTCGACGG+CGG 0.670392 2.2:-73431524 None:intergenic
AGACACAGACACAAAACATG+TGG 0.683636 2.2:+73432038 MS.gene047202:CDS
TTGCCAGGGAAGCATCAATG+AGG 0.690178 2.2:-73431139 None:intergenic
ATTTGGATGGTACCAGTGAG+TGG 0.695345 2.2:+73431983 MS.gene047202:CDS
TGGATGGTACCAGTGAGTGG+TGG 0.715883 2.2:+73431986 MS.gene047202:CDS
AGCGCGCTATGAAAACTGAG+AGG 0.721312 2.2:-73431542 None:intergenic
TGAGGATGAAACCCTAACAG+AGG 0.728996 2.2:-73431611 None:intergenic
GGTGGTGTTGAATTTCAAGG+TGG 0.744371 2.2:+73432172 MS.gene047202:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTGTTTTGAAACTTTT+GGG - chr2.2:73431806-73431825 None:intergenic 20.0%
! AACAACAATCAAAATGAAAG+TGG + chr2.2:73431755-73431774 MS.gene047202:CDS 25.0%
! TTGAAGAAAATGGTTGAATT+TGG - chr2.2:73431217-73431236 None:intergenic 25.0%
!!! GTGATTTGTTTTGAAACTTT+TGG - chr2.2:73431807-73431826 None:intergenic 25.0%
AACAATCAAAATGAAAGTGG+CGG + chr2.2:73431758-73431777 MS.gene047202:CDS 30.0%
AAGAGTTGTTAACGTTGAAA+TGG - chr2.2:73432312-73432331 None:intergenic 30.0%
ACGAGAATTACATGAGAAAA+CGG + chr2.2:73431705-73431724 MS.gene047202:CDS 30.0%
GTTTGAAGAAGGTTGAATAT+TGG - chr2.2:73431048-73431067 None:intergenic 30.0%
TCAACATCATTCAATGTCAT+TGG + chr2.2:73432348-73432367 MS.gene047202:CDS 30.0%
TGAAGAAGAAGAAGAAGAAT+TGG - chr2.2:73431081-73431100 None:intergenic 30.0%
! AATTTGGTTGTTGTTGTTGT+TGG - chr2.2:73431201-73431220 None:intergenic 30.0%
! TCTGTAGGTAATTCTTTTTC+TGG + chr2.2:73431893-73431912 MS.gene047202:CDS 30.0%
AGAAGAAGAAGAAGAATTGG+AGG - chr2.2:73431078-73431097 None:intergenic 35.0%
AGAAGGTTGAATATTGGAGA+TGG - chr2.2:73431042-73431061 None:intergenic 35.0%
ATGATGAGAATTTGAAGGTG+AGG - chr2.2:73430967-73430986 None:intergenic 35.0%
CAAAACAAATCACCAACAAC+AGG + chr2.2:73431814-73431833 MS.gene047202:CDS 35.0%
CATGTTCAGTCTCAAAATCA+AGG + chr2.2:73432073-73432092 MS.gene047202:CDS 35.0%
CCATTCAATTGTTTCACCAT+CGG - chr2.2:73431390-73431409 None:intergenic 35.0%
CTTAATGCTTATACAAGAGC+TGG + chr2.2:73432286-73432305 MS.gene047202:CDS 35.0%
GAAGAAGAAGAAGAATTGGA+GGG - chr2.2:73431077-73431096 None:intergenic 35.0%
TATCAACCATCACAGCATTT+GGG + chr2.2:73432223-73432242 MS.gene047202:CDS 35.0%
! TGCTGATGATGAGAATTTGA+AGG - chr2.2:73430972-73430991 None:intergenic 35.0%
! TTGTTGTTGTTGGATACATC+TGG - chr2.2:73431191-73431210 None:intergenic 35.0%
!!! TGATTTTGAGACTGAACATG+AGG - chr2.2:73432073-73432092 None:intergenic 35.0%
AAGGCCATCACCTTTCATTA+TGG + chr2.2:73431013-73431032 MS.gene047202:CDS 40.0%
AGACACAGACACAAAACATG+TGG + chr2.2:73432038-73432057 MS.gene047202:CDS 40.0%
AGGCCATCACCTTTCATTAT+GGG + chr2.2:73431014-73431033 MS.gene047202:CDS 40.0%
CAAAACAACAAGCAGAAGAG+AGG + chr2.2:73430894-73430913 MS.gene047202:CDS 40.0%
CACCAACAACAGGATGATAT+GGG + chr2.2:73431824-73431843 MS.gene047202:CDS 40.0%
CCGATGGTGAAACAATTGAA+TGG + chr2.2:73431387-73431406 MS.gene047202:CDS 40.0%
CTCAGTTACATTTCATGCCA+AGG + chr2.2:73432119-73432138 MS.gene047202:CDS 40.0%
CTGATGAACGCTGATCAAAT+TGG + chr2.2:73431668-73431687 MS.gene047202:CDS 40.0%
GACTGAACATGAGGTGTAAA+AGG - chr2.2:73432064-73432083 None:intergenic 40.0%
GCGGTTGAAGTTGAAGAAAA+TGG - chr2.2:73431227-73431246 None:intergenic 40.0%
GCTGTATCTGATTCCAACTT+GGG + chr2.2:73432250-73432269 MS.gene047202:CDS 40.0%
GGCATGAAATGTAACTGAGA+CGG - chr2.2:73432118-73432137 None:intergenic 40.0%
GTATCAACCATCACAGCATT+TGG + chr2.2:73432222-73432241 MS.gene047202:CDS 40.0%
GTTGCCGGTAACATATTTGA+CGG - chr2.2:73431929-73431948 None:intergenic 40.0%
TCACCAACAACAGGATGATA+TGG + chr2.2:73431823-73431842 MS.gene047202:CDS 40.0%
TCGACCGTCAAATATGTTAC+CGG + chr2.2:73431922-73431941 MS.gene047202:CDS 40.0%
TCTTCTCCACTCTCATCATT+AGG - chr2.2:73432400-73432419 None:intergenic 40.0%
TGAATGGCTTCTTCAACAAG+CGG + chr2.2:73431403-73431422 MS.gene047202:CDS 40.0%
TTCCAGTTGACCAGAGAATT+AGG + chr2.2:73431356-73431375 MS.gene047202:CDS 40.0%
TTGTTGGATACATCTGGAAG+AGG - chr2.2:73431185-73431204 None:intergenic 40.0%
TTGTTTCACCATCGGATTTG+TGG - chr2.2:73431382-73431401 None:intergenic 40.0%
! GAGTGGAAGTACAATTTGGA+TGG + chr2.2:73431970-73431989 MS.gene047202:CDS 40.0%
! GTGAGGATGATTCTTGTTGT+TGG - chr2.2:73430950-73430969 None:intergenic 40.0%
! GTTGTTGCTGTTGTTGTTGT+TGG - chr2.2:73431646-73431665 None:intergenic 40.0%
!! AGGATGATTCTTGTTGTTGG+TGG - chr2.2:73430947-73430966 None:intergenic 40.0%
!! ATGATTCTTGTTGTTGGTGG+TGG - chr2.2:73430944-73430963 None:intergenic 40.0%
!! TCATCATTAGGTTGAGGTTG+AGG - chr2.2:73432388-73432407 None:intergenic 40.0%
!! TGATTCTTGTTGTTGGTGGT+GGG - chr2.2:73430943-73430962 None:intergenic 40.0%
AGCAGCAAACATACCCAAGT+TGG - chr2.2:73432266-73432285 None:intergenic 45.0%
AGGTTCAATGTTCCAGCTTC+TGG + chr2.2:73432139-73432158 MS.gene047202:CDS 45.0%
ATTTGGATGGTACCAGTGAG+TGG + chr2.2:73431983-73432002 MS.gene047202:CDS 45.0%
CAAAATGAAAGTGGCGGTGA+TGG + chr2.2:73431764-73431783 MS.gene047202:CDS 45.0%
CCTCAACCTAATGATGAGAG+TGG + chr2.2:73432391-73432410 MS.gene047202:CDS 45.0%
GAAATTGGCTGGGATTGTTC+CGG - chr2.2:73431456-73431475 None:intergenic 45.0%
GAAGCTGGAACATTGAACCT+TGG - chr2.2:73432139-73432158 None:intergenic 45.0%
GAATTAGGCCACAAATCCGA+TGG + chr2.2:73431371-73431390 MS.gene047202:CDS 45.0%
GACAGGCACACAAAAGTTGA+CGG + chr2.2:73431287-73431306 MS.gene047202:CDS 45.0%
GAGATGGAGCCCATAATGAA+AGG - chr2.2:73431026-73431045 None:intergenic 45.0%
GAGCCCATAATGAAAGGTGA+TGG - chr2.2:73431020-73431039 None:intergenic 45.0%
GAGGGAGAAGAGTTTGAAGA+AGG - chr2.2:73431059-73431078 None:intergenic 45.0%
GGACGTGGTGGTTTACAATT+GGG + chr2.2:73432193-73432212 MS.gene047202:CDS 45.0%
GGAGCTTCTTCTTCTTCTGT+AGG + chr2.2:73431878-73431897 MS.gene047202:CDS 45.0%
GGATTTGTGGCCTAATTCTC+TGG - chr2.2:73431369-73431388 None:intergenic 45.0%
GGCTGTATCTGATTCCAACT+TGG + chr2.2:73432249-73432268 MS.gene047202:CDS 45.0%
GTGATGGCCTTCCATCAAAA+GGG - chr2.2:73431004-73431023 None:intergenic 45.0%
GTTGAATTTCAAGGTGGACG+TGG + chr2.2:73432178-73432197 MS.gene047202:CDS 45.0%
TGAGGATGAAACCCTAACAG+AGG - chr2.2:73431614-73431633 None:intergenic 45.0%
TGGACGTGGTGGTTTACAAT+TGG + chr2.2:73432192-73432211 MS.gene047202:CDS 45.0%
TTCAATGTTCCAGCTTCTGG+TGG + chr2.2:73432142-73432161 MS.gene047202:CDS 45.0%
TTCTCATCATCAGCAGCTTG+TGG + chr2.2:73430977-73430996 MS.gene047202:CDS 45.0%
TTGGATACATCTGGAAGAGG+AGG - chr2.2:73431182-73431201 None:intergenic 45.0%
! AACTTTTGTGTGCCTGTCCT+TGG - chr2.2:73431285-73431304 None:intergenic 45.0%
! ACCATCACAGCATTTGGGAT+TGG + chr2.2:73432228-73432247 MS.gene047202:CDS 45.0%
! CCACTCTCATCATTAGGTTG+AGG - chr2.2:73432394-73432413 None:intergenic 45.0%
! GGTGGTGGTGTTGAATTTCA+AGG + chr2.2:73432169-73432188 MS.gene047202:CDS 45.0%
! GGTGGTGTTGAATTTCAAGG+TGG + chr2.2:73432172-73432191 MS.gene047202:CDS 45.0%
! GTTGCTGTTGTTGTTGTTGG+TGG - chr2.2:73431643-73431662 None:intergenic 45.0%
! TTGTGGTCCCTTTTGATGGA+AGG + chr2.2:73430994-73431013 MS.gene047202:CDS 45.0%
!! AGCATCAATGAGGTGTTGAG+TGG - chr2.2:73431132-73431151 None:intergenic 45.0%
!! GACGTTGAGCGTTGAGAAAT+TGG - chr2.2:73431471-73431490 None:intergenic 45.0%
!! GATTCTTGTTGTTGGTGGTG+GGG - chr2.2:73430942-73430961 None:intergenic 45.0%
!! GCATCAATGAGGTGTTGAGT+GGG - chr2.2:73431131-73431150 None:intergenic 45.0%
!! TGAGCGTTGAGAAATTGGCT+GGG - chr2.2:73431466-73431485 None:intergenic 45.0%
!! TTGAGCGTTGAGAAATTGGC+TGG - chr2.2:73431467-73431486 None:intergenic 45.0%
!! TTTTGGAGGATTTGCAACCG+CGG - chr2.2:73431255-73431274 None:intergenic 45.0%
AAGAGGAGGTTCAGATCTGG+TGG - chr2.2:73431168-73431187 None:intergenic 50.0%
AATGTTCCAGCTTCTGGTGG+TGG + chr2.2:73432145-73432164 MS.gene047202:CDS 50.0%
ACACCTCATTGATGCTTCCC+TGG + chr2.2:73431136-73431155 MS.gene047202:CDS 50.0%
AGATCTGGTGGCAATTGCCA+GGG - chr2.2:73431156-73431175 None:intergenic 50.0%
AGCGCGCTATGAAAACTGAG+AGG - chr2.2:73431545-73431564 None:intergenic 50.0%
CAAAACGATCCACCAAGGAC+AGG + chr2.2:73431270-73431289 MS.gene047202:CDS 50.0%
CAACAGGATGATATGGGCGA+AGG + chr2.2:73431830-73431849 MS.gene047202:CDS 50.0%
CGCCCATATCATCCTGTTGT+TGG - chr2.2:73431829-73431848 None:intergenic 50.0%
GAATTTCAAGGTGGACGTGG+TGG + chr2.2:73432181-73432200 MS.gene047202:CDS 50.0%
GATGATATGGGCGAAGGTGA+CGG + chr2.2:73431836-73431855 MS.gene047202:CDS 50.0%
GCCAATCCCAAATGCTGTGA+TGG - chr2.2:73432232-73432251 None:intergenic 50.0%
GGCCTAATTCTCTGGTCAAC+TGG - chr2.2:73431361-73431380 None:intergenic 50.0%
GGGATGGGGATGAATATTGG+TGG - chr2.2:73430922-73430941 None:intergenic 50.0%
GTGGGGATGGGGATGAATAT+TGG - chr2.2:73430925-73430944 None:intergenic 50.0%
TCCTCCAAAACGATCCACCA+AGG + chr2.2:73431265-73431284 MS.gene047202:CDS 50.0%
TGGAAGAGGAGGTTCAGATC+TGG - chr2.2:73431171-73431190 None:intergenic 50.0%
TGGTACGCAGCTTCTTCGTA+AGG - chr2.2:73431584-73431603 None:intergenic 50.0%
! CAGCTTGTGGTCCCTTTTGA+TGG + chr2.2:73430990-73431009 MS.gene047202:CDS 50.0%
! CGGGGAGTGGAAGTACAATT+TGG + chr2.2:73431966-73431985 MS.gene047202:CDS 50.0%
! CTGAGAGGAGCTGATTTCGA+CGG - chr2.2:73431530-73431549 None:intergenic 50.0%
! GCTGTTGTTGTTGTTGGTGG+TGG - chr2.2:73431640-73431659 None:intergenic 50.0%
! GGTGATGGCCTTCCATCAAA+AGG - chr2.2:73431005-73431024 None:intergenic 50.0%
! TTTTCATAGCGCGCTTGCAC+TGG + chr2.2:73431550-73431569 MS.gene047202:CDS 50.0%
! TTTTGTGTGCCTGTCCTTGG+TGG - chr2.2:73431282-73431301 None:intergenic 50.0%
!! CTGTCCTTGGTGGATCGTTT+TGG - chr2.2:73431272-73431291 None:intergenic 50.0%
!! TCCTTGGTGGATCGTTTTGG+AGG - chr2.2:73431269-73431288 None:intergenic 50.0%
!! TGTTGTTGGTGGTGGTGATG+AGG - chr2.2:73431632-73431651 None:intergenic 50.0%
!! TTGCCAGGGAAGCATCAATG+AGG - chr2.2:73431142-73431161 None:intergenic 50.0%
!! TTGTTGTTGGTGGTGGGGAT+GGG - chr2.2:73430937-73430956 None:intergenic 50.0%
AACGTCTCACTCCGTAGCAG+CGG + chr2.2:73431485-73431504 MS.gene047202:CDS 55.0%
ACAGTGTAGAGCCGCTGCTA+CGG - chr2.2:73431499-73431518 None:intergenic 55.0%
ACCAACACGCGCCTCTGTTA+GGG + chr2.2:73431600-73431619 MS.gene047202:CDS 55.0%
ACTCTTGCTGCACATGTCGC+CGG - chr2.2:73431335-73431354 None:intergenic 55.0%
AGGATTTGCAACCGCGGTGA+CGG - chr2.2:73431249-73431268 None:intergenic 55.0%
CACACAAAAGTTGACGGCCG+TGG + chr2.2:73431293-73431312 MS.gene047202:CDS 55.0%
CAGATCTGGTGGCAATTGCC+AGG - chr2.2:73431157-73431176 None:intergenic 55.0%
GCATTCGAATTCTCCGGCCA+CGG - chr2.2:73431313-73431332 None:intergenic 55.0%
GCTTCTTCAACAAGCGGAGC+CGG + chr2.2:73431409-73431428 MS.gene047202:CDS 55.0%
GTTACCGGCAACAGCCATGT+GGG + chr2.2:73431937-73431956 MS.gene047202:CDS 55.0%
TACCAACACGCGCCTCTGTT+AGG + chr2.2:73431599-73431618 MS.gene047202:CDS 55.0%
TCGCCGGCATTCGAATTCTC+CGG - chr2.2:73431319-73431338 None:intergenic 55.0%
TGGATGGTACCAGTGAGTGG+TGG + chr2.2:73431986-73432005 MS.gene047202:CDS 55.0%
TGGCCGGAGAATTCGAATGC+CGG + chr2.2:73431313-73431332 MS.gene047202:CDS 55.0%
TGTTACCGGCAACAGCCATG+TGG + chr2.2:73431936-73431955 MS.gene047202:CDS 55.0%
! AACAGCCATGTGGGCTACAG+CGG + chr2.2:73431946-73431965 MS.gene047202:CDS 55.0%
! AGAGGAGCTGATTTCGACGG+CGG - chr2.2:73431527-73431546 None:intergenic 55.0%
! GAAAGTGGCGGTGATGGTGA+TGG + chr2.2:73431770-73431789 MS.gene047202:CDS 55.0%
!! CTTGTTGTTGGTGGTGGGGA+TGG - chr2.2:73430938-73430957 None:intergenic 55.0%
!! TGTTGTTGGTGGTGGGGATG+GGG - chr2.2:73430936-73430955 None:intergenic 55.0%
AACTTCAACCGCCGTCACCG+CGG + chr2.2:73431235-73431254 MS.gene047202:CDS 60.0%
CAAAAGTTGACGGCCGTGGC+CGG + chr2.2:73431297-73431316 MS.gene047202:CDS 60.0%
GTAGCCCACATGGCTGTTGC+CGG - chr2.2:73431944-73431963 None:intergenic 60.0%
GTTGCAGCACCACCACTCAC+TGG - chr2.2:73431998-73432017 None:intergenic 60.0%
! ACAGCCATGTGGGCTACAGC+GGG + chr2.2:73431947-73431966 MS.gene047202:CDS 60.0%
! ACCCTAACAGAGGCGCGTGT+TGG - chr2.2:73431604-73431623 None:intergenic 60.0%
! ATTTGCAACCGCGGTGACGG+CGG - chr2.2:73431246-73431265 None:intergenic 60.0%
! GATATGGGCGAAGGTGACGG+TGG + chr2.2:73431839-73431858 MS.gene047202:CDS 60.0%
!! GTTCCAGCTTCTGGTGGTGG+TGG + chr2.2:73432148-73432167 MS.gene047202:CDS 60.0%
ACTCCCCGCTGTAGCCCACA+TGG - chr2.2:73431954-73431973 None:intergenic 65.0%
ATCATCGCTGCCACCGGCAC+CGG + chr2.2:73431434-73431453 MS.gene047202:CDS 65.0%
CCACCACCACCACCAGAAGC+TGG - chr2.2:73432154-73432173 None:intergenic 65.0%
GGCTGGGATTGTTCCGGTGC+CGG - chr2.2:73431450-73431469 None:intergenic 65.0%
! ATGGGCGAAGGTGACGGTGG+TGG + chr2.2:73431842-73431861 MS.gene047202:CDS 65.0%
! ATGTGGGCTACAGCGGGGAG+TGG + chr2.2:73431953-73431972 MS.gene047202:CDS 65.0%
! CAGCCATGTGGGCTACAGCG+GGG + chr2.2:73431948-73431967 MS.gene047202:CDS 65.0%
! TGGGATTGTTCCGGTGCCGG+TGG - chr2.2:73431447-73431466 None:intergenic 65.0%
!! CCAGCTTCTGGTGGTGGTGG+TGG + chr2.2:73432151-73432170 MS.gene047202:CDS 65.0%
!! GAAGGTGACGGTGGTGGAGG+AGG + chr2.2:73431848-73431867 MS.gene047202:CDS 65.0%
!! GCTTCTGGTGGTGGTGGTGG+TGG + chr2.2:73432154-73432173 MS.gene047202:CDS 65.0%
CCGGCGATCATCGCTGCCAC+CGG + chr2.2:73431428-73431447 MS.gene047202:CDS 70.0%
CCGGTGGCAGCGATGATCGC+CGG - chr2.2:73431431-73431450 None:intergenic 70.0%
! GGCGAAGGTGACGGTGGTGG+AGG + chr2.2:73431845-73431864 MS.gene047202:CDS 70.0%
!! GACGGTGGTGGAGGAGGTGG+TGG + chr2.2:73431854-73431873 MS.gene047202:CDS 70.0%
!! GGTGACGGTGGTGGAGGAGG+TGG + chr2.2:73431851-73431870 MS.gene047202:CDS 70.0%
!! GGTGGTGGAGGAGGTGGTGG+TGG + chr2.2:73431857-73431876 MS.gene047202:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 73430876 73432441 73430876 ID=MS.gene047202
chr2.2 mRNA 73430876 73432441 73430876 ID=MS.gene047202.t1;Parent=MS.gene047202
chr2.2 exon 73430876 73432441 73430876 ID=MS.gene047202.t1.exon1;Parent=MS.gene047202.t1
chr2.2 CDS 73430876 73432441 73430876 ID=cds.MS.gene047202.t1;Parent=MS.gene047202.t1
Gene Sequence

>MS.gene047202

ATGGAACTATCAGATTTACAAAACAACAAGCAGAAGAGAGGCACCACCAATATTCATCCCCATCCCCACCACCAACAACAAGAATCATCCTCACCTTCAAATTCTCATCATCAGCAGCTTGTGGTCCCTTTTGATGGAAGGCCATCACCTTTCATTATGGGCTCCATCTCCAATATTCAACCTTCTTCAAACTCTTCTCCCTCCAATTCTTCTTCTTCTTCTTCAGCTTCAGCTTCAGCTTCAGCTTCTGCACCCACTCAACACCTCATTGATGCTTCCCTGGCAATTGCCACCAGATCTGAACCTCCTCTTCCAGATGTATCCAACAACAACAACAACCAAATTCAACCATTTTCTTCAACTTCAACCGCCGTCACCGCGGTTGCAAATCCTCCAAAACGATCCACCAAGGACAGGCACACAAAAGTTGACGGCCGTGGCCGGAGAATTCGAATGCCGGCGACATGTGCAGCAAGAGTTTTCCAGTTGACCAGAGAATTAGGCCACAAATCCGATGGTGAAACAATTGAATGGCTTCTTCAACAAGCGGAGCCGGCGATCATCGCTGCCACCGGCACCGGAACAATCCCAGCCAATTTCTCAACGCTCAACGTCTCACTCCGTAGCAGCGGCTCTACACTGTCTGCGCCGCCGTCGAAATCAGCTCCTCTCAGTTTTCATAGCGCGCTTGCACTGGCTCATCATCCTTACGAAGAAGCTGCGTACCAACACGCGCCTCTGTTAGGGTTTCATCCTCATCACCACCACCAACAACAACAACAGCAACAACAACTGATGAACGCTGATCAAATTGGTGAAGCACTTTCAAACGAGAATTACATGAGAAAACGGTATAGAGAAGATCTTTTCAAAGATGATAACAACAATCAAAATGAAAGTGGCGGTGATGGTGATGGTTCTTCTTCTCCCAAAAGTTTCAAAACAAATCACCAACAACAGGATGATATGGGCGAAGGTGACGGTGGTGGAGGAGGTGGTGGTGGAGCTTCTTCTTCTTCTGTAGGTAATTCTTTTTCTGGACTTCTTCGACCGTCAAATATGTTACCGGCAACAGCCATGTGGGCTACAGCGGGGAGTGGAAGTACAATTTGGATGGTACCAGTGAGTGGTGGTGCTGCAACTTCTTCAAATTCAGAGACACAGACACAGACACAAAACATGTGGCCTTTTACACCTCATGTTCAGTCTCAAAATCAAGGCAACGCTGCTGCTGTAACTCCGTCTCAGTTACATTTCATGCCAAGGTTCAATGTTCCAGCTTCTGGTGGTGGTGGTGGTGGTGTTGAATTTCAAGGTGGACGTGGTGGTTTACAATTGGGTTCAGCGTATCAACCATCACAGCATTTGGGATTGGCTGTATCTGATTCCAACTTGGGTATGTTTGCTGCTCTTAATGCTTATACAAGAGCTGGCCATTTCAACGTTAACAACTCTTCTGATCATCATCATCATCAACATCATTCAATGTCATTGGACTCTCATTCTCAACCTCAACCTCAACCTAATGATGAGAGTGGAGAAGATGCTCCTAATACCTCACAATGA
Protein sequence

>MS.gene047202.t1

MELSDLQNNKQKRGTTNIHPHPHHQQQESSSPSNSHHQQLVVPFDGRPSPFIMGSISNIQPSSNSSPSNSSSSSSASASASASAPTQHLIDASLAIATRSEPPLPDVSNNNNNQIQPFSSTSTAVTAVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPLSFHSALALAHHPYEEAAYQHAPLLGFHPHHHHQQQQQQQQLMNADQIGEALSNENYMRKRYREDLFKDDNNNQNESGGDGDGSSSPKSFKTNHQQQDDMGEGDGGGGGGGGASSSSVGNSFSGLLRPSNMLPATAMWATAGSGSTIWMVPVSGGAATSSNSETQTQTQNMWPFTPHVQSQNQGNAAAVTPSQLHFMPRFNVPASGGGGGGVEFQGGRGGLQLGSAYQPSQHLGLAVSDSNLGMFAALNAYTRAGHFNVNNSSDHHHHQHHSMSLDSHSQPQPQPNDESGEDAPNTSQ