AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047332

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047332.t1 MTR_2g014060 85.303 347 34 4 1 341 1 336 1.68e-165 465
MS.gene047332.t1 MTR_2g096740 64.444 90 26 2 12 95 45 134 1.97e-33 125
MS.gene047332.t1 MTR_2g096740 64.444 90 26 2 12 95 60 149 2.06e-33 125
MS.gene047332.t1 MTR_8g027295 64.706 85 29 1 19 102 17 101 2.24e-32 122
MS.gene047332.t1 MTR_8g068210 84.127 63 9 1 26 88 33 94 4.30e-31 120
MS.gene047332.t1 MTR_4g461080 76.471 68 13 2 11 76 14 80 5.93e-31 118
MS.gene047332.t1 MTR_7g024670 55.882 102 34 2 11 111 62 153 1.03e-30 120
MS.gene047332.t1 MTR_2g093220 77.049 61 11 1 22 79 34 94 1.48e-29 115
MS.gene047332.t1 MTR_4g088580 64.706 85 19 2 26 100 56 139 1.53e-29 117
MS.gene047332.t1 MTR_3g091820 73.846 65 14 1 19 80 34 98 2.99e-29 114
MS.gene047332.t1 MTR_8g479350 82.143 56 10 0 23 78 66 121 4.21e-29 115
MS.gene047332.t1 MTR_3g077750 81.818 55 10 0 21 75 57 111 7.78e-29 114
MS.gene047332.t1 MTR_3g090430 70.769 65 16 1 17 81 46 107 8.20e-29 114
MS.gene047332.t1 MTR_5g031440 86.792 53 7 0 23 75 41 93 1.33e-28 113
MS.gene047332.t1 MTR_7g059400 64.865 74 25 1 6 79 58 130 1.66e-28 113
MS.gene047332.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 2.97e-28 111
MS.gene047332.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 3.45e-28 111
MS.gene047332.t1 MTR_4g022370 65.333 75 21 2 10 79 62 136 7.34e-28 112
MS.gene047332.t1 MTR_4g109980 86.000 50 7 0 26 75 41 90 8.06e-28 111
MS.gene047332.t1 MTR_4g063780 40.000 175 66 5 22 181 71 221 1.76e-27 110
MS.gene047332.t1 MTR_1g056810 79.245 53 11 0 27 79 14 66 1.09e-26 107
MS.gene047332.t1 MTR_2g059540 85.417 48 7 0 26 73 32 79 1.25e-26 105
MS.gene047332.t1 MTR_8g079060 62.667 75 23 2 22 91 22 96 3.56e-26 104
MS.gene047332.t1 MTR_2g014170 87.500 48 6 0 26 73 46 93 1.58e-25 104
MS.gene047332.t1 MTR_8g015840 71.186 59 17 0 26 84 21 79 1.62e-25 102
MS.gene047332.t1 MTR_4g089095 74.545 55 13 1 27 81 52 105 5.45e-24 100
MS.gene047332.t1 MTR_2g013370 62.857 70 23 2 14 81 33 101 6.66e-24 99.4
MS.gene047332.t1 MTR_4g089095 74.545 55 13 1 27 81 18 71 6.68e-24 99.4
MS.gene047332.t1 MTR_3g435480 66.667 57 19 0 27 83 138 194 1.61e-23 101
MS.gene047332.t1 MTR_7g010950 70.370 54 16 0 27 80 137 190 2.06e-23 100
MS.gene047332.t1 MTR_4g082060 66.667 57 19 0 27 83 124 180 6.60e-23 99.4
MS.gene047332.t1 MTR_7g086780 54.167 72 33 0 7 78 81 152 7.10e-23 99.0
MS.gene047332.t1 MTR_6g012450 52.273 88 33 2 17 95 125 212 1.53e-22 98.6
MS.gene047332.t1 MTR_8g044220 66.667 54 18 0 27 80 120 173 1.77e-22 97.8
MS.gene047332.t1 MTR_2g016030 69.231 52 16 0 27 78 49 100 2.79e-22 92.0
MS.gene047332.t1 MTR_6g027450 64.815 54 19 0 26 79 90 143 4.48e-22 95.5
MS.gene047332.t1 MTR_6g027460 66.038 53 18 0 26 78 97 149 4.72e-22 95.9
MS.gene047332.t1 MTR_5g041420 54.545 77 31 1 4 80 121 193 1.09e-20 91.3
MS.gene047332.t1 MTR_5g041380 63.793 58 21 0 27 84 129 186 8.67e-20 89.7
MS.gene047332.t1 MTR_5g041530 65.385 52 18 0 27 78 142 193 1.08e-19 89.4
MS.gene047332.t1 MTR_5g041400 62.712 59 22 0 27 85 121 179 1.98e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047332.t1 AT5G60850 61.957 92 29 2 18 109 44 129 1.26e-32 124
MS.gene047332.t1 AT5G60200 72.059 68 15 1 22 85 48 115 6.21e-32 120
MS.gene047332.t1 AT5G62940 73.913 69 13 1 7 75 60 123 1.25e-31 122
MS.gene047332.t1 AT2G28510 75.806 62 15 0 23 84 46 107 2.43e-30 117
MS.gene047332.t1 AT5G65590 44.578 166 71 5 15 177 31 178 1.06e-29 116
MS.gene047332.t1 AT1G51700 68.919 74 20 2 26 99 34 104 1.48e-29 112
MS.gene047332.t1 AT1G07640 66.216 74 23 1 8 79 2 75 1.53e-29 114
MS.gene047332.t1 AT1G07640 66.216 74 23 1 8 79 58 131 2.13e-29 115
MS.gene047332.t1 AT3G61850 61.176 85 30 2 19 102 55 137 2.66e-29 114
MS.gene047332.t1 AT3G61850 61.176 85 30 2 19 102 55 137 2.66e-29 114
MS.gene047332.t1 AT1G07640 66.216 74 23 1 8 79 66 139 2.77e-29 115
MS.gene047332.t1 AT3G61850 61.176 85 30 2 19 102 67 149 3.26e-29 114
MS.gene047332.t1 AT3G52440 71.212 66 19 0 27 92 27 92 3.47e-29 113
MS.gene047332.t1 AT3G61850 61.176 85 30 2 19 102 55 137 3.73e-29 114
MS.gene047332.t1 AT3G52440 71.212 66 19 0 27 92 46 111 4.45e-29 113
MS.gene047332.t1 AT3G61850 61.176 85 30 2 19 102 67 149 4.85e-29 114
MS.gene047332.t1 AT3G45610 70.312 64 19 0 23 86 38 101 5.24e-29 112
MS.gene047332.t1 AT2G37590 76.786 56 13 0 26 81 90 145 1.20e-28 113
MS.gene047332.t1 AT2G28810 63.380 71 26 0 6 76 58 128 1.26e-28 113
MS.gene047332.t1 AT2G28810 63.380 71 26 0 6 76 75 145 1.80e-28 113
MS.gene047332.t1 AT4G21050 66.176 68 23 0 22 89 21 88 2.89e-28 109
MS.gene047332.t1 AT3G55370 75.000 60 15 0 27 86 78 137 3.21e-28 112
MS.gene047332.t1 AT3G55370 75.000 60 15 0 27 86 78 137 3.98e-28 112
MS.gene047332.t1 AT5G66940 49.091 110 51 3 27 131 34 143 4.61e-28 109
MS.gene047332.t1 AT3G55370 64.384 73 23 1 17 86 110 182 5.62e-28 112
MS.gene047332.t1 AT1G28310 80.357 56 11 0 26 81 28 83 9.08e-28 110
MS.gene047332.t1 AT1G21340 75.862 58 14 0 27 84 40 97 1.03e-27 109
MS.gene047332.t1 AT1G28310 80.357 56 11 0 26 81 52 107 1.44e-27 110
MS.gene047332.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.66e-27 109
MS.gene047332.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.66e-27 109
MS.gene047332.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.66e-27 109
MS.gene047332.t1 AT5G02460 59.783 92 36 1 26 117 96 186 2.97e-27 110
MS.gene047332.t1 AT3G21270 84.314 51 8 0 26 76 30 80 1.22e-26 105
MS.gene047332.t1 AT4G38000 50.000 120 40 3 26 143 42 143 1.63e-26 105
MS.gene047332.t1 AT3G50410 77.193 57 12 1 27 82 32 88 3.66e-26 105
MS.gene047332.t1 AT4G24060 73.684 57 15 0 23 79 51 107 3.76e-26 107
MS.gene047332.t1 AT2G46590 74.545 55 13 1 19 72 61 115 1.42e-24 102
MS.gene047332.t1 AT1G64620 66.129 62 16 1 18 74 37 98 1.48e-24 102
MS.gene047332.t1 AT1G47655 74.510 51 13 0 23 73 27 77 1.52e-24 99.8
MS.gene047332.t1 AT2G46590 74.545 55 13 1 19 72 73 127 1.69e-24 102
MS.gene047332.t1 AT5G62430 52.500 80 35 1 2 78 28 107 2.50e-23 98.6
MS.gene047332.t1 AT4G21040 62.687 67 25 0 27 93 27 93 3.47e-23 96.7
MS.gene047332.t1 AT3G47500 70.370 54 16 0 27 80 112 165 6.09e-23 99.4
MS.gene047332.t1 AT1G69570 58.209 67 28 0 12 78 119 185 1.20e-22 98.2
MS.gene047332.t1 AT5G39660 57.971 69 25 1 10 78 127 191 1.95e-22 98.2
MS.gene047332.t1 AT5G39660 57.971 69 25 1 10 78 127 191 1.95e-22 98.2
MS.gene047332.t1 AT5G39660 57.971 69 25 1 10 78 127 191 1.95e-22 98.2
MS.gene047332.t1 AT2G34140 57.746 71 27 1 11 78 41 111 3.55e-22 92.0
MS.gene047332.t1 AT1G29160 59.701 67 24 1 15 78 49 115 4.88e-22 92.0
MS.gene047332.t1 AT4G21080 66.667 57 18 1 27 83 27 82 9.81e-22 92.8
MS.gene047332.t1 AT1G26790 65.385 52 18 0 27 78 113 164 1.20e-20 92.0
MS.gene047332.t1 AT4G21030 48.611 72 37 0 22 93 18 89 2.66e-16 76.6

Find 93 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCTCTGATCAATCTTTA+TGG 0.208599 2.3:-70630810 MS.gene047332:CDS
GGTAGCGGTGGTGTTGCTGC+TGG 0.285628 2.3:-70630673 MS.gene047332:CDS
GGGTAGTGGATCTGCTTCTT+TGG 0.299081 2.3:-70630650 MS.gene047332:CDS
CAACATTGAAACCTTGTAAA+AGG 0.337370 2.3:+70631055 None:intergenic
ATTGGTGCTGGTGCTGGTGC+TGG 0.339496 2.3:-70630739 MS.gene047332:CDS
CTTCTTTGGCTCTGAATCAA+TGG 0.377878 2.3:-70630636 MS.gene047332:CDS
GTTGGAGTTGGTGTTGGTCT+TGG 0.379165 2.3:-70631096 MS.gene047332:CDS
GTAGCGGTGGTGTTGCTGCT+GGG 0.381102 2.3:-70630672 MS.gene047332:CDS
TGGTGTTGAGGATGAAGTTT+TGG 0.384562 2.3:+70631368 None:intergenic
TTCTTTCAACTAGGTGGTAA+TGG 0.386741 2.3:-70630976 MS.gene047332:CDS
TTCCCTAAGGAATTACTTGA+TGG 0.409259 2.3:+70631348 None:intergenic
CTGCTACTTATAATGAAAGT+TGG 0.411866 2.3:-70630864 MS.gene047332:CDS
GAAAGGATTGGTGCTGGTGC+TGG 0.414116 2.3:-70630745 MS.gene047332:CDS
TGAAAGAATTGTTGCGGCGG+TGG 0.414683 2.3:+70630991 None:intergenic
ACACCATCAAGTAATTCCTT+AGG 0.417503 2.3:-70631351 MS.gene047332:CDS
CCACTATTGATGAAGCTTTG+AGG 0.422498 2.3:+70630841 None:intergenic
ATCAACACCACTTCAACTAA+TGG 0.426570 2.3:-70630781 MS.gene047332:CDS
TGTTGCGGCGGTGGACGATT+CGG 0.426876 2.3:+70631000 None:intergenic
AATCAATGGCATGATCTGTC+AGG 0.428092 2.3:-70630622 MS.gene047332:CDS
GTTGGTGTTGGAGTTGGTGT+TGG 0.430153 2.3:-70631102 MS.gene047332:CDS
CCATCGCAGCCATGGTCAAC+TGG 0.443933 2.3:+70631286 None:intergenic
TATTGGTGGTGGTTGTCGTA+AGG 0.444825 2.3:-70631400 MS.gene047332:CDS
GCAAAACATGCAGAAGGTAC+TGG 0.452080 2.3:-70631452 MS.gene047332:CDS
GAATGATTAAATGCCGCAAA+AGG 0.453309 2.3:+70631183 None:intergenic
GGTAGTCGTGGTGTTGGTGC+TGG 0.457080 2.3:-70630715 MS.gene047332:CDS
CAGAATGTTGGTGTTGGAGT+TGG 0.465123 2.3:-70631108 MS.gene047332:CDS
GTAGCATTAACCATGCTAGA+TGG 0.472281 2.3:+70630907 None:intergenic
CACCATCAAGTAATTCCTTA+GGG 0.476186 2.3:-70631350 MS.gene047332:CDS
TAGCGGTGGTGTTGCTGCTG+GGG 0.478385 2.3:-70630671 MS.gene047332:CDS
TTACGACAACCACCACCAAT+AGG 0.480617 2.3:+70631402 None:intergenic
ACATTGAGAAATGTTCCTAT+TGG 0.486939 2.3:-70631417 MS.gene047332:CDS
GTGGCAGTGTTGGCTGAGAC+AGG 0.487687 2.3:+70631319 None:intergenic
TCCACCACCATTAGTTGAAG+TGG 0.494139 2.3:+70630774 None:intergenic
CCTCAAAGCTTCATCAATAG+TGG 0.497822 2.3:-70630841 MS.gene047332:CDS
CTAGGACACTTCTGAGGTTG+AGG 0.509691 2.3:+70631543 None:intergenic
CTCAACCTCAGAAGTGTCCT+AGG 0.514646 2.3:-70631542 MS.gene047332:CDS
CCGCAACAATTCTTTCAACT+AGG 0.517280 2.3:-70630985 MS.gene047332:CDS
TTTGAACAGTCTCAGAATGT+TGG 0.527603 2.3:-70631120 MS.gene047332:CDS
CCAGTTGACCATGGCTGCGA+TGG 0.534868 2.3:-70631286 MS.gene047332:CDS
GGTGCTGGTGCTGGTGCTGG+TGG 0.536056 2.3:-70630736 MS.gene047332:CDS
GCTGGTGGTAGTCGTGGTGT+TGG 0.540988 2.3:-70630721 MS.gene047332:CDS
TCGGTTGATTGTGGCAGTGT+TGG 0.542995 2.3:+70631309 None:intergenic
ACCACTTCAACTAATGGTGG+TGG 0.543681 2.3:-70630775 MS.gene047332:CDS
AGCCGTGGTGCTAGTGGTAG+CGG 0.547004 2.3:-70630688 MS.gene047332:CDS
TTTGATTCCTCCATCTAGCA+TGG 0.549167 2.3:-70630917 MS.gene047332:CDS
ATTGGTGGTGGTTGTCGTAA+GGG 0.550492 2.3:-70631399 MS.gene047332:CDS
CGCAGCCATGGTCAACTGGT+CGG 0.551583 2.3:+70631290 None:intergenic
TTGAGAAATGTTCCTATTGG+TGG 0.552839 2.3:-70631414 MS.gene047332:CDS
AGAAATGTTCCTATTGGTGG+TGG 0.559899 2.3:-70631411 MS.gene047332:CDS
AAGAACGTGGTGATGGTGGA+AGG 0.564755 2.3:-70631599 MS.gene047332:CDS
AGCGGTGGTGTTGCTGCTGG+GGG 0.569854 2.3:-70630670 MS.gene047332:CDS
GTTGTTGTAATAGCAGAACT+TGG 0.576616 2.3:+70631503 None:intergenic
TGTGCTGAAGAGTGTGCTGA+TGG 0.579842 2.3:+70631147 None:intergenic
TGCAGAAGGTACTGGACTCA+AGG 0.580923 2.3:-70631444 MS.gene047332:CDS
CGTGGTGATGGTGGAAGGAG+AGG 0.581943 2.3:-70631594 MS.gene047332:CDS
GTCAACTGGTCGGTTGATTG+TGG 0.591951 2.3:+70631300 None:intergenic
ATTCAAACCTCGTGGTTCAG+AGG 0.592802 2.3:+70630939 None:intergenic
GAGCAAGAACGTGGTGATGG+TGG 0.595958 2.3:-70631603 MS.gene047332:CDS
CAGTCTCAGAATGTTGGTGT+TGG 0.601097 2.3:-70631114 MS.gene047332:CDS
GCTGGTGCTGGTGGTAGTCG+TGG 0.610585 2.3:-70630727 MS.gene047332:CDS
CAACAATTCTTTCAACTAGG+TGG 0.614943 2.3:-70630982 MS.gene047332:CDS
AGTCGTGGTGTTGGTGCTGG+TGG 0.615015 2.3:-70630712 MS.gene047332:CDS
ATCAATGGCATGATCTGTCA+GGG 0.615122 2.3:-70630621 MS.gene047332:CDS
GGAATTACTTGATGGTGTTG+AGG 0.615613 2.3:+70631356 None:intergenic
TCTTCTGCAAAACATGCAGA+AGG 0.615692 2.3:-70631458 MS.gene047332:CDS
GTTGGTGCTGGTGGTAGCCG+TGG 0.616357 2.3:-70630703 MS.gene047332:CDS
AATTCTGAAAGGATTGGTGC+TGG 0.618090 2.3:-70630751 MS.gene047332:CDS
AGAAGAAACGAGGCTGAGAG+AGG 0.619615 2.3:+70631475 None:intergenic
ATGGAGCAAGAACGTGGTGA+TGG 0.620486 2.3:-70631606 MS.gene047332:CDS
CGTGGTTCAGAGGTAAACAT+TGG 0.628309 2.3:+70630949 None:intergenic
GGTGGAAATTCTGAAAGGAT+TGG 0.629295 2.3:-70630757 MS.gene047332:CDS
ATGGTGGTGGAAATTCTGAA+AGG 0.635909 2.3:-70630762 MS.gene047332:CDS
AACACCACTTCAACTAATGG+TGG 0.642679 2.3:-70630778 MS.gene047332:CDS
TTTCAACTAGGTGGTAATGG+AGG 0.647517 2.3:-70630973 MS.gene047332:CDS
CCTAGTTGAAAGAATTGTTG+CGG 0.647938 2.3:+70630985 None:intergenic
AGACAGGGAAGAATTCCCTA+AGG 0.650183 2.3:+70631335 None:intergenic
GGTGGTAGCCGTGGTGCTAG+TGG 0.651201 2.3:-70630694 MS.gene047332:CDS
GCATTAACCATGCTAGATGG+AGG 0.653768 2.3:+70630910 None:intergenic
TCACACCTAGGACACTTCTG+AGG 0.655155 2.3:+70631537 None:intergenic
ATCAACCGACCAGTTGACCA+TGG 0.659300 2.3:-70631295 MS.gene047332:CDS
CATCAACAAGATCACTGAGG+AGG 0.672156 2.3:+70630592 None:intergenic
GGAATCAAATTCAAACCTCG+TGG 0.678570 2.3:+70630931 None:intergenic
TGAGAGATGGAGCAAGAACG+TGG 0.685685 2.3:-70631612 None:intergenic
AGTTGAAAGAATTGTTGCGG+CGG 0.685998 2.3:+70630988 None:intergenic
TGGCAGTGTTGGCTGAGACA+GGG 0.687589 2.3:+70631320 None:intergenic
CGTGGTGCTAGTGGTAGCGG+TGG 0.690985 2.3:-70630685 MS.gene047332:CDS
ACTCCATAAAGATTGATCAG+AGG 0.693689 2.3:+70630807 None:intergenic
GTGTTGAATGAATCACACCT+AGG 0.703840 2.3:+70631525 None:intergenic
GCTCTTGTAAGCTCATCACA+AGG 0.707366 2.3:-70631024 MS.gene047332:CDS
AGAAGGTACTGGACTCAAGG+TGG 0.711298 2.3:-70631441 MS.gene047332:CDS
ATGTTTACCTCTGAACCACG+AGG 0.723992 2.3:-70630946 MS.gene047332:CDS
CACCGCTACCACTAGCACCA+CGG 0.727044 2.3:+70630686 None:intergenic
CAACATCAACAAGATCACTG+AGG 0.799835 2.3:+70630589 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ACATTGAGAAATGTTCCTAT+TGG - chr2.3:70630792-70630811 MS.gene047332:CDS 30.0%
CAACATTGAAACCTTGTAAA+AGG + chr2.3:70631157-70631176 None:intergenic 30.0%
! CTGCTACTTATAATGAAAGT+TGG - chr2.3:70631345-70631364 MS.gene047332:CDS 30.0%
! TCAAATTTGAGCCTTTTACA+AGG - chr2.3:70631143-70631162 MS.gene047332:CDS 30.0%
ACACCATCAAGTAATTCCTT+AGG - chr2.3:70630858-70630877 MS.gene047332:CDS 35.0%
ACTCCATAAAGATTGATCAG+AGG + chr2.3:70631405-70631424 None:intergenic 35.0%
ATCAACACCACTTCAACTAA+TGG - chr2.3:70631428-70631447 MS.gene047332:CDS 35.0%
CAACAATTCTTTCAACTAGG+TGG - chr2.3:70631227-70631246 MS.gene047332:CDS 35.0%
CACCATCAAGTAATTCCTTA+GGG - chr2.3:70630859-70630878 MS.gene047332:CDS 35.0%
CCTAGTTGAAAGAATTGTTG+CGG + chr2.3:70631227-70631246 None:intergenic 35.0%
GAATGATTAAATGCCGCAAA+AGG + chr2.3:70631029-70631048 None:intergenic 35.0%
GTTGTTGTAATAGCAGAACT+TGG + chr2.3:70630709-70630728 None:intergenic 35.0%
TTCCCTAAGGAATTACTTGA+TGG + chr2.3:70630864-70630883 None:intergenic 35.0%
TTCTTTCAACTAGGTGGTAA+TGG - chr2.3:70631233-70631252 MS.gene047332:CDS 35.0%
TTGAGAAATGTTCCTATTGG+TGG - chr2.3:70630795-70630814 MS.gene047332:CDS 35.0%
TTGATAAAAAGAAGCAGCAG+AGG + chr2.3:70630982-70631001 None:intergenic 35.0%
TTTGAACAGTCTCAGAATGT+TGG - chr2.3:70631089-70631108 MS.gene047332:CDS 35.0%
!! TCTGCTGCTTCTTTTTATCA+AGG - chr2.3:70630981-70631000 MS.gene047332:CDS 35.0%
!!! TTTTATCAAGGAGGTGTTGT+TGG - chr2.3:70630993-70631012 MS.gene047332:CDS 35.0%
AACACCACTTCAACTAATGG+TGG - chr2.3:70631431-70631450 MS.gene047332:CDS 40.0%
AATCAATGGCATGATCTGTC+AGG - chr2.3:70631587-70631606 MS.gene047332:CDS 40.0%
AGAAATGTTCCTATTGGTGG+TGG - chr2.3:70630798-70630817 MS.gene047332:CDS 40.0%
AGTTGAAAGAATTGTTGCGG+CGG + chr2.3:70631224-70631243 None:intergenic 40.0%
ATCAATGGCATGATCTGTCA+GGG - chr2.3:70631588-70631607 MS.gene047332:CDS 40.0%
CCACTATTGATGAAGCTTTG+AGG + chr2.3:70631371-70631390 None:intergenic 40.0%
CCGCAACAATTCTTTCAACT+AGG - chr2.3:70631224-70631243 MS.gene047332:CDS 40.0%
CCTCAAAGCTTCATCAATAG+TGG - chr2.3:70631368-70631387 MS.gene047332:CDS 40.0%
GAGCCTCTGATCAATCTTTA+TGG - chr2.3:70631399-70631418 MS.gene047332:CDS 40.0%
GGAATCAAATTCAAACCTCG+TGG + chr2.3:70631281-70631300 None:intergenic 40.0%
GTAGCATTAACCATGCTAGA+TGG + chr2.3:70631305-70631324 None:intergenic 40.0%
GTGTTGAATGAATCACACCT+AGG + chr2.3:70630687-70630706 None:intergenic 40.0%
TCTTCTGCAAAACATGCAGA+AGG - chr2.3:70630751-70630770 MS.gene047332:CDS 40.0%
TTTGATTCCTCCATCTAGCA+TGG - chr2.3:70631292-70631311 MS.gene047332:CDS 40.0%
! AATTCTGAAAGGATTGGTGC+TGG - chr2.3:70631458-70631477 MS.gene047332:CDS 40.0%
! CATGTTTTGCAGAAGAAACG+AGG + chr2.3:70630747-70630766 None:intergenic 40.0%
! GCTGCTTCTTTTTATCAAGG+AGG - chr2.3:70630984-70631003 MS.gene047332:CDS 40.0%
! GGTGGAAATTCTGAAAGGAT+TGG - chr2.3:70631452-70631471 MS.gene047332:CDS 40.0%
!! ATGGTGGTGGAAATTCTGAA+AGG - chr2.3:70631447-70631466 MS.gene047332:CDS 40.0%
!! CTTCTTTGGCTCTGAATCAA+TGG - chr2.3:70631573-70631592 MS.gene047332:CDS 40.0%
!! GGAATTACTTGATGGTGTTG+AGG + chr2.3:70630856-70630875 None:intergenic 40.0%
!! TGGTGTTGAGGATGAAGTTT+TGG + chr2.3:70630844-70630863 None:intergenic 40.0%
!! TTTCAACTAGGTGGTAATGG+AGG - chr2.3:70631236-70631255 MS.gene047332:CDS 40.0%
ACCACTTCAACTAATGGTGG+TGG - chr2.3:70631434-70631453 MS.gene047332:CDS 45.0%
AGACAGGGAAGAATTCCCTA+AGG + chr2.3:70630877-70630896 None:intergenic 45.0%
ATGTTTACCTCTGAACCACG+AGG - chr2.3:70631263-70631282 MS.gene047332:CDS 45.0%
ATTCAAACCTCGTGGTTCAG+AGG + chr2.3:70631273-70631292 None:intergenic 45.0%
CAGTCTCAGAATGTTGGTGT+TGG - chr2.3:70631095-70631114 MS.gene047332:CDS 45.0%
CGTGGTTCAGAGGTAAACAT+TGG + chr2.3:70631263-70631282 None:intergenic 45.0%
GCATTAACCATGCTAGATGG+AGG + chr2.3:70631302-70631321 None:intergenic 45.0%
GCTCTTGTAAGCTCATCACA+AGG - chr2.3:70631185-70631204 MS.gene047332:CDS 45.0%
TCCACCACCATTAGTTGAAG+TGG + chr2.3:70631438-70631457 None:intergenic 45.0%
TTACGACAACCACCACCAAT+AGG + chr2.3:70630810-70630829 None:intergenic 45.0%
! GCAAAACATGCAGAAGGTAC+TGG - chr2.3:70630757-70630776 MS.gene047332:CDS 45.0%
! TGGTTACATGTCGCCTTTTG+CGG - chr2.3:70631013-70631032 MS.gene047332:CDS 45.0%
!! ATTGGTGGTGGTTGTCGTAA+GGG - chr2.3:70630810-70630829 MS.gene047332:CDS 45.0%
!! CAGAATGTTGGTGTTGGAGT+TGG - chr2.3:70631101-70631120 MS.gene047332:CDS 45.0%
!! TATTGGTGGTGGTTGTCGTA+AGG - chr2.3:70630809-70630828 MS.gene047332:CDS 45.0%
AGAAGAAACGAGGCTGAGAG+AGG + chr2.3:70630737-70630756 None:intergenic 50.0%
ATCAACCGACCAGTTGACCA+TGG - chr2.3:70630914-70630933 MS.gene047332:CDS 50.0%
ATGGAGCAAGAACGTGGTGA+TGG - chr2.3:70630603-70630622 MS.gene047332:CDS 50.0%
GTCAACTGGTCGGTTGATTG+TGG + chr2.3:70630912-70630931 None:intergenic 50.0%
TCACACCTAGGACACTTCTG+AGG + chr2.3:70630675-70630694 None:intergenic 50.0%
TCGGTTGATTGTGGCAGTGT+TGG + chr2.3:70630903-70630922 None:intergenic 50.0%
TGAAAGAATTGTTGCGGCGG+TGG + chr2.3:70631221-70631240 None:intergenic 50.0%
! TGTGCTGAAGAGTGTGCTGA+TGG + chr2.3:70631065-70631084 None:intergenic 50.0%
!! AAGAACGTGGTGATGGTGGA+AGG - chr2.3:70630610-70630629 MS.gene047332:CDS 50.0%
!! AGAAGGTACTGGACTCAAGG+TGG - chr2.3:70630768-70630787 MS.gene047332:CDS 50.0%
!! CTAGGACACTTCTGAGGTTG+AGG + chr2.3:70630669-70630688 None:intergenic 50.0%
!! CTCAACCTCAGAAGTGTCCT+AGG - chr2.3:70630667-70630686 MS.gene047332:CDS 50.0%
!! GGGTAGTGGATCTGCTTCTT+TGG - chr2.3:70631559-70631578 MS.gene047332:CDS 50.0%
!! GTTGGAGTTGGTGTTGGTCT+TGG - chr2.3:70631113-70631132 MS.gene047332:CDS 50.0%
!! GTTGGTGTTGGAGTTGGTGT+TGG - chr2.3:70631107-70631126 MS.gene047332:CDS 50.0%
!! TGCAGAAGGTACTGGACTCA+AGG - chr2.3:70630765-70630784 MS.gene047332:CDS 50.0%
!!! GTTTTTAGCCATCGCAGCCA+TGG + chr2.3:70630934-70630953 None:intergenic 50.0%
!! GAAAGGATTGGTGCTGGTGC+TGG - chr2.3:70631464-70631483 MS.gene047332:CDS 55.0%
!! GAGCAAGAACGTGGTGATGG+TGG - chr2.3:70630606-70630625 MS.gene047332:CDS 55.0%
!! TGGCAGTGTTGGCTGAGACA+GGG + chr2.3:70630892-70630911 None:intergenic 55.0%
CACCGCTACCACTAGCACCA+CGG + chr2.3:70631526-70631545 None:intergenic 60.0%
CCAGTTGACCATGGCTGCGA+TGG - chr2.3:70630923-70630942 MS.gene047332:CDS 60.0%
CCATCGCAGCCATGGTCAAC+TGG + chr2.3:70630926-70630945 None:intergenic 60.0%
CGCAGCCATGGTCAACTGGT+CGG + chr2.3:70630922-70630941 None:intergenic 60.0%
GCTGGTGGTAGTCGTGGTGT+TGG - chr2.3:70631488-70631507 MS.gene047332:CDS 60.0%
TGTTGCGGCGGTGGACGATT+CGG + chr2.3:70631212-70631231 None:intergenic 60.0%
! AGCCGTGGTGCTAGTGGTAG+CGG - chr2.3:70631521-70631540 MS.gene047332:CDS 60.0%
!! AGTCGTGGTGTTGGTGCTGG+TGG - chr2.3:70631497-70631516 MS.gene047332:CDS 60.0%
!! ATTGGTGCTGGTGCTGGTGC+TGG - chr2.3:70631470-70631489 MS.gene047332:CDS 60.0%
!! CGTGGTGATGGTGGAAGGAG+AGG - chr2.3:70630615-70630634 MS.gene047332:CDS 60.0%
!! GGTAGTCGTGGTGTTGGTGC+TGG - chr2.3:70631494-70631513 MS.gene047332:CDS 60.0%
!! GTAGCGGTGGTGTTGCTGCT+GGG - chr2.3:70631537-70631556 MS.gene047332:CDS 60.0%
!! GTGGCAGTGTTGGCTGAGAC+AGG + chr2.3:70630893-70630912 None:intergenic 60.0%
!! TAGCGGTGGTGTTGCTGCTG+GGG - chr2.3:70631538-70631557 MS.gene047332:CDS 60.0%
! GGTGGTAGCCGTGGTGCTAG+TGG - chr2.3:70631515-70631534 MS.gene047332:CDS 65.0%
!! AGCGGTGGTGTTGCTGCTGG+GGG - chr2.3:70631539-70631558 MS.gene047332:CDS 65.0%
!! CGTGGTGCTAGTGGTAGCGG+TGG - chr2.3:70631524-70631543 MS.gene047332:CDS 65.0%
!! GCTGGTGCTGGTGGTAGTCG+TGG - chr2.3:70631482-70631501 MS.gene047332:CDS 65.0%
!! GGTAGCGGTGGTGTTGCTGC+TGG - chr2.3:70631536-70631555 MS.gene047332:CDS 65.0%
!! GGTGTTGCTGCTGGGGGTAG+TGG - chr2.3:70631545-70631564 MS.gene047332:CDS 65.0%
!! GTTGGTGCTGGTGGTAGCCG+TGG - chr2.3:70631506-70631525 MS.gene047332:CDS 65.0%
!! GGTGCTGGTGCTGGTGCTGG+TGG - chr2.3:70631473-70631492 MS.gene047332:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 70630603 70631628 70630603 ID=MS.gene047332
chr2.3 mRNA 70630603 70631628 70630603 ID=MS.gene047332.t1;Parent=MS.gene047332
chr2.3 exon 70630603 70631628 70630603 ID=MS.gene047332.t1.exon1;Parent=MS.gene047332.t1
chr2.3 CDS 70630603 70631628 70630603 ID=cds.MS.gene047332.t1;Parent=MS.gene047332.t1
Gene Sequence

>MS.gene047332

ATGGAGCAAGAACGTGGTGATGGTGGAAGGAGAGGTGAGATGAGTAAGCATGTTCAAGCTCATCCTCAACCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCTCGTTTCTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACATTGAGAAATGTTCCTATTGGTGGTGGTTGTCGTAAGGGAAAGAAATCCAAAACTTCATCCTCAACACCATCAAGTAATTCCTTAGGGAATTCTTCCCTGTCTCAGCCAACACTGCCACAATCAACCGACCAGTTGACCATGGCTGCGATGGCTAAAAACTCTTCTTCTGTTTTTGCTTCATTTTCCTCTGCTGCTTCTTTTTATCAAGGAGGTGTTGTTGGTTACATGTCGCCTTTTGCGGCATTTAATCATTCGTTGAATTCGAATCCATCAGCACACTCTTCAGCACACACTTTTGAACAGTCTCAGAATGTTGGTGTTGGAGTTGGTGTTGGTCTTGGTTCTTCTTCAAATTTGAGCCTTTTACAAGGTTTCAATGTTGCTGCTGCTGCTCTTGTAAGCTCATCACAAGGACCGAATCGTCCACCGCCGCAACAATTCTTTCAACTAGGTGGTAATGGAGGACCAATGTTTACCTCTGAACCACGAGGTTTGAATTTGATTCCTCCATCTAGCATGGTTAATGCTACTACTTCTGTTGCTACTGATTCTGCTACTTATAATGAAAGTTGGCCTCAAAGCTTCATCAATAGTGGTAACAACAGAGCCTCTGATCAATCTTTATGGAGTACTATCAACACCACTTCAACTAATGGTGGTGGAAATTCTGAAAGGATTGGTGCTGGTGCTGGTGCTGGTGGTAGTCGTGGTGTTGGTGCTGGTGGTAGCCGTGGTGCTAGTGGTAGCGGTGGTGTTGCTGCTGGGGGTAGTGGATCTGCTTCTTTGGCTCTGAATCAATGGCATGATCTGTCAGGGTTCAATCCTCCTCAGTGA
Protein sequence

>MS.gene047332.t1

MEQERGDGGRRGEMSKHVQAHPQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPIGGGCRKGKKSKTSSSTPSSNSLGNSSLSQPTLPQSTDQLTMAAMAKNSSSVFASFSSAASFYQGGVVGYMSPFAAFNHSLNSNPSAHSSAHTFEQSQNVGVGVGVGLGSSSNLSLLQGFNVAAAALVSSSQGPNRPPPQQFFQLGGNGGPMFTSEPRGLNLIPPSSMVNATTSVATDSATYNESWPQSFINSGNNRASDQSLWSTINTTSTNGGGNSERIGAGAGAGGSRGVGAGGSRGASGSGGVAAGGSGSASLALNQWHDLSGFNPPQ