AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047335

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047335.t1 MTR_2g014200 91.608 143 10 1 1 141 1 143 3.24e-79 230
MS.gene047335.t1 MTR_4g088555 64.085 142 48 2 1 140 1 141 1.20e-51 160
MS.gene047335.t1 MTR_2g078770 65.517 87 30 0 52 138 48 134 2.02e-37 125
MS.gene047335.t1 MTR_8g463140 66.667 81 27 0 59 139 62 142 1.94e-36 123
MS.gene047335.t1 MTR_7g444860 70.238 84 25 0 54 137 141 224 1.52e-35 125
MS.gene047335.t1 MTR_8g005960 67.470 83 27 0 54 136 179 261 4.93e-35 124
MS.gene047335.t1 MTR_5g046670 61.053 95 37 0 46 140 228 322 1.14e-34 125
MS.gene047335.t1 MTR_1g035010 56.410 117 40 3 23 136 70 178 1.40e-34 127
MS.gene047335.t1 MTR_7g110320 56.075 107 37 1 33 139 126 222 1.46e-34 127
MS.gene047335.t1 MTR_7g092930 65.517 87 26 1 55 137 57 143 5.02e-34 121
MS.gene047335.t1 MTR_1g053715 67.470 83 27 0 53 135 65 147 2.61e-33 119
MS.gene047335.t1 MTR_2g046550 69.333 75 23 0 62 136 139 213 3.36e-33 123
MS.gene047335.t1 MTR_4g109770 70.886 79 23 0 57 135 118 196 1.01e-32 120
MS.gene047335.t1 MTR_7g110320 57.692 104 34 1 33 136 126 219 1.37e-32 121
MS.gene047335.t1 MTR_3g085180 56.842 95 40 1 46 139 148 242 1.56e-32 119
MS.gene047335.t1 MTR_7g028740 65.432 81 28 0 56 136 71 151 2.63e-32 117
MS.gene047335.t1 MTR_2g461920 67.500 80 26 0 62 141 171 250 5.02e-32 119
MS.gene047335.t1 MTR_1g086250 61.957 92 34 1 49 139 133 224 1.39e-31 118
MS.gene047335.t1 MTR_3g099080 62.651 83 31 0 57 139 93 175 1.25e-30 113
MS.gene047335.t1 MTR_8g096780 61.905 84 32 0 56 139 93 176 1.09e-28 108
MS.gene047335.t1 MTR_8g080690 57.895 76 32 0 60 135 149 224 2.59e-25 99.0
MS.gene047335.t1 MTR_8g080680 42.857 133 58 5 8 135 86 205 8.34e-25 97.8
MS.gene047335.t1 MTR_8g080670 58.667 75 31 0 60 134 160 234 1.20e-24 97.8
MS.gene047335.t1 MTR_2g020620 50.820 61 30 0 75 135 103 163 1.52e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047335.t1 AT2G33810 70.000 90 24 1 53 139 42 131 2.41e-39 129
MS.gene047335.t1 AT1G53160 62.626 99 37 0 41 139 33 131 2.64e-38 128
MS.gene047335.t1 AT1G53160 62.626 99 37 0 41 139 33 131 2.64e-38 128
MS.gene047335.t1 AT1G53160 62.626 99 37 0 41 139 33 131 2.76e-38 128
MS.gene047335.t1 AT1G20980 68.539 89 26 1 49 137 109 195 6.88e-36 130
MS.gene047335.t1 AT1G76580 68.750 80 25 0 60 139 112 191 1.82e-34 126
MS.gene047335.t1 AT3G60030 63.830 94 29 2 50 139 112 204 4.22e-34 125
MS.gene047335.t1 AT1G02065 68.293 82 26 0 54 135 180 261 4.39e-34 121
MS.gene047335.t1 AT1G76580 68.750 80 25 0 60 139 112 191 8.33e-34 124
MS.gene047335.t1 AT3G15270 65.823 79 25 1 59 135 58 136 9.97e-34 116
MS.gene047335.t1 AT1G76580 68.750 80 25 0 60 139 112 191 1.05e-33 124
MS.gene047335.t1 AT2G47070 60.825 97 34 1 43 139 91 183 1.28e-33 124
MS.gene047335.t1 AT1G69170 70.886 79 23 0 57 135 119 197 4.56e-33 120
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 1.74e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27370 55.670 97 41 1 41 135 153 249 3.96e-31 115
MS.gene047335.t1 AT1G27360 56.701 97 41 1 40 135 152 248 1.85e-30 113
MS.gene047335.t1 AT1G27360 56.701 97 41 1 40 135 152 248 1.85e-30 113
MS.gene047335.t1 AT1G27360 56.701 97 41 1 40 135 152 248 1.85e-30 113
MS.gene047335.t1 AT1G27360 56.701 97 41 1 40 135 152 248 1.85e-30 113
MS.gene047335.t1 AT3G57920 56.731 104 40 1 32 135 34 132 2.04e-30 112
MS.gene047335.t1 AT5G43270 64.103 78 28 0 59 136 166 243 3.35e-30 112
MS.gene047335.t1 AT5G43270 64.103 78 28 0 59 136 166 243 3.35e-30 112
MS.gene047335.t1 AT5G43270 64.103 78 28 0 59 136 166 243 3.35e-30 112
MS.gene047335.t1 AT2G42200 63.636 77 28 0 60 136 72 148 4.27e-30 112
MS.gene047335.t1 AT5G50670 56.667 90 39 0 51 140 90 179 1.57e-29 110
MS.gene047335.t1 AT5G50670 56.667 90 39 0 51 140 90 179 1.57e-29 110
MS.gene047335.t1 AT5G50570 56.667 90 39 0 51 140 90 179 1.57e-29 110
MS.gene047335.t1 AT5G50570 56.667 90 39 0 51 140 90 179 1.57e-29 110
MS.gene047335.t1 AT1G02065 61.538 65 23 1 54 116 180 244 6.87e-21 85.1
MS.gene047335.t1 AT5G18830 49.383 81 41 0 55 135 131 211 3.23e-20 85.9
MS.gene047335.t1 AT5G18830 49.383 81 41 0 55 135 131 211 3.75e-20 85.9
MS.gene047335.t1 AT5G18830 49.383 81 41 0 55 135 131 211 4.14e-20 85.5
MS.gene047335.t1 AT2G47070 67.925 53 17 0 87 139 2 54 3.73e-19 82.8

Find 33 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAACCTTATGGCGCTTA+TGG 0.248219 2.3:+70575217 None:intergenic
AATGGTATTCACAAACCTTA+TGG 0.308780 2.3:+70575208 None:intergenic
TTTACTTATGGATGGAAGTT+GGG 0.337434 2.3:-70575454 None:intergenic
ATGACTTGAAAAGGAGTTGT+AGG 0.355530 2.3:-70573401 MS.gene047335:CDS
GGTTTGTGAATACCATTCTA+AGG 0.368542 2.3:-70575202 MS.gene047335:CDS
TTGTCAACCTGCTACATTGC+TGG 0.372075 2.3:+70575139 None:intergenic
GAAGAGGAAGATGTGAGTTA+TGG 0.375825 2.3:-70575372 MS.gene047335:CDS
CTTTACTTATGGATGGAAGT+TGG 0.392836 2.3:-70575455 None:intergenic
CAGAATTTGATGACTTGAAA+AGG 0.424158 2.3:-70573410 MS.gene047335:CDS
GAGATGATGGGAAGAAGAAA+AGG 0.443829 2.3:-70575350 MS.gene047335:CDS
AAGGAGTTGTAGGAGGCGTT+TGG 0.456087 2.3:-70573391 MS.gene047335:CDS
TGAAGTAGAAGTAGAAGAAG+AGG 0.463169 2.3:-70575388 MS.gene047335:CDS
ATGGATGGAAGTTGGGGTGA+GGG 0.465253 2.3:-70575447 MS.gene047335:CDS
GATGTGAGTTATGGAGATGA+TGG 0.466595 2.3:-70575363 MS.gene047335:CDS
AACAGGAAAGGGTCAAAAGC+TGG 0.479614 2.3:-70575306 MS.gene047335:CDS
AGTTGTAGGAGGCGTTTGGC+TGG 0.487448 2.3:-70573387 MS.gene047335:CDS
TATGGATGGAAGTTGGGGTG+AGG 0.500828 2.3:-70575448 MS.gene047335:CDS
TGACTGATCATCTTTACAAC+AGG 0.501584 2.3:-70575323 MS.gene047335:CDS
ATCATCTTTACAACAGGAAA+GGG 0.510630 2.3:-70575317 MS.gene047335:CDS
GATTTACCTTTACTTATGGA+TGG 0.521525 2.3:-70575462 None:intergenic
TTGAAGCTCTGAAATGAGTA+CGG 0.530837 2.3:+70575173 None:intergenic
GCAGTACCATAAGCGCCATA+AGG 0.534642 2.3:-70575223 MS.gene047335:CDS
TTACTTATGGATGGAAGTTG+GGG 0.539498 2.3:-70575453 None:intergenic
GATCATCTTTACAACAGGAA+AGG 0.569404 2.3:-70575318 MS.gene047335:CDS
GTACGGAATGAGCCTTAGAA+TGG 0.572289 2.3:+70575190 None:intergenic
AGATGATGGGAAGAAGAAAA+GGG 0.572790 2.3:-70575349 MS.gene047335:CDS
CAGTTATCAACTTGACAAGA+AGG 0.576877 2.3:+70575270 None:intergenic
ATGTGAGTTATGGAGATGAT+GGG 0.595276 2.3:-70575362 MS.gene047335:CDS
TCATTTCAGAGCTTCAACAA+AGG 0.599380 2.3:-70575167 MS.gene047335:CDS
ACTTGAAAAGGAGTTGTAGG+AGG 0.645868 2.3:-70573398 MS.gene047335:CDS
TGATGGGAAGAAGAAAAGGG+TGG 0.655448 2.3:-70575346 MS.gene047335:CDS
AGGAAAGGGTCAAAAGCTGG+AGG 0.666819 2.3:-70575303 MS.gene047335:CDS
GTTTGGCTGGACATAACGAG+AGG 0.681910 2.3:-70573374 MS.gene047335:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATTTACTAGAAA+TGG + chr2.3:70573950-70573969 None:intergenic 10.0%
!!! AAAACAAGTTTTTTTTAATA+TGG - chr2.3:70574246-70574265 MS.gene047335:intron 10.0%
!!! AAAATGATAGATTTTTATAA+GGG + chr2.3:70574176-70574195 None:intergenic 10.0%
!!! ATTTCATCATTATAATTTTT+TGG - chr2.3:70574414-70574433 MS.gene047335:intron 10.0%
!!! ATTTTGTAAAAATAAGATTA+AGG - chr2.3:70574327-70574346 MS.gene047335:intron 10.0%
!!! TAAAAAAAACTTGTTTTATA+TGG + chr2.3:70574243-70574262 None:intergenic 10.0%
!!! TAAAATGATAGATTTTTATA+AGG + chr2.3:70574177-70574196 None:intergenic 10.0%
!!! TTATTTTTTAATATTCCAAT+AGG - chr2.3:70574074-70574093 MS.gene047335:intron 10.0%
!!! TTTTGTAAAAATAAGATTAA+GGG - chr2.3:70574328-70574347 MS.gene047335:intron 10.0%
!!! TTTTTTTTTTCTATCAAATA+AGG - chr2.3:70573892-70573911 MS.gene047335:intron 10.0%
!! AATTAATTAGTTGTAAATCA+TGG + chr2.3:70575311-70575330 None:intergenic 15.0%
!! ATTAATTAGTTGTAAATCAT+GGG + chr2.3:70575310-70575329 None:intergenic 15.0%
!! TAATTATTAACTTATAGCTT+TGG - chr2.3:70575326-70575345 MS.gene047335:CDS 15.0%
!!! CATTTTACTAAAAATAGTAA+GGG - chr2.3:70574190-70574209 MS.gene047335:intron 15.0%
!!! TCATTTTACTAAAAATAGTA+AGG - chr2.3:70574189-70574208 MS.gene047335:intron 15.0%
!!! TTTATATGGACTTTTAAAAA+AGG + chr2.3:70574229-70574248 None:intergenic 15.0%
!!! TTTTTTATTGATAAATACCT+TGG - chr2.3:70573810-70573829 MS.gene047335:intron 15.0%
!! AAAAATAAAATAAAGGGAAG+TGG - chr2.3:70574371-70574390 MS.gene047335:intron 20.0%
!! AAATATTGAGGTTCAATATA+AGG + chr2.3:70573732-70573751 None:intergenic 20.0%
!! AAGACAGGAAAAAAAAATTA+GGG - chr2.3:70575078-70575097 MS.gene047335:intron 20.0%
!! AAGATATTCAAGGAAAAAAA+AGG + chr2.3:70573690-70573709 None:intergenic 20.0%
!! ATAAGATTAAGGGTAAAATA+CGG - chr2.3:70574338-70574357 MS.gene047335:intron 20.0%
!! ATGAACATCAATAAATATTC+AGG + chr2.3:70574749-70574768 None:intergenic 20.0%
!! TACTAATACTAAGATATTCA+AGG + chr2.3:70573700-70573719 None:intergenic 20.0%
!! TCAAAAAAAATGTTCAAATG+TGG - chr2.3:70574272-70574291 MS.gene047335:intron 20.0%
!! TGAACATCAATAAATATTCA+GGG + chr2.3:70574748-70574767 None:intergenic 20.0%
!! TTAAGCTTCTTAACAAATAA+GGG - chr2.3:70574129-70574148 MS.gene047335:intron 20.0%
!! TTTAAGCTTCTTAACAAATA+AGG - chr2.3:70574128-70574147 MS.gene047335:intron 20.0%
!! TTTGTGCATCATTATAAAAT+GGG - chr2.3:70573984-70574003 MS.gene047335:intron 20.0%
!!! ACCATATTTTACTATAAAAG+AGG + chr2.3:70574305-70574324 None:intergenic 20.0%
!!! ACCTCTTTTATAGTAAAATA+TGG - chr2.3:70574301-70574320 MS.gene047335:intron 20.0%
!!! CATGAAGTATCTTTAAAAAA+TGG + chr2.3:70575053-70575072 None:intergenic 20.0%
!!! CATTTTTTAAAGATACTTCA+TGG - chr2.3:70575051-70575070 MS.gene047335:intron 20.0%
!!! TTTTACTATAAAAGAGGTAA+TGG + chr2.3:70574299-70574318 None:intergenic 20.0%
! ACACAATGTTCTTCATATAT+AGG - chr2.3:70575263-70575282 MS.gene047335:CDS 25.0%
! AGGAAAAAAAAGGTGAAATT+AGG + chr2.3:70573680-70573699 None:intergenic 25.0%
! ATATATGATCTTGAAGTTGA+AGG + chr2.3:70574893-70574912 None:intergenic 25.0%
! ATGCTAACAATTGTATGTTA+AGG - chr2.3:70574009-70574028 MS.gene047335:intron 25.0%
! CAAGACAGGAAAAAAAAATT+AGG - chr2.3:70575077-70575096 MS.gene047335:intron 25.0%
! CTTTGTGCATCATTATAAAA+TGG - chr2.3:70573983-70574002 MS.gene047335:intron 25.0%
! GAAAATTGTAATCAACCTAT+TGG + chr2.3:70574092-70574111 None:intergenic 25.0%
! GAACATCAATAAATATTCAG+GGG + chr2.3:70574747-70574766 None:intergenic 25.0%
! GGAAAAAAAAGGTGAAATTA+GGG + chr2.3:70573679-70573698 None:intergenic 25.0%
! TTCTTAACAAATAAGGGTTA+TGG - chr2.3:70574135-70574154 MS.gene047335:intron 25.0%
!! ACCAACAAATTTTTCCAATT+GGG + chr2.3:70574703-70574722 None:intergenic 25.0%
!! AGAACATTGTGTATATGTTT+TGG + chr2.3:70575255-70575274 None:intergenic 25.0%
!! CTTTAGTCATCACTTAATTT+TGG - chr2.3:70574975-70574994 MS.gene047335:intron 25.0%
!! TACCAACAAATTTTTCCAAT+TGG + chr2.3:70574704-70574723 None:intergenic 25.0%
!! TTGGAATATGGTTTTTCTAT+AGG - chr2.3:70575345-70575364 MS.gene047335:CDS 25.0%
!!! CACTTTTGAACATTTTTTAG+AGG + chr2.3:70573919-70573938 None:intergenic 25.0%
!!! TAACTTATAGCTTTGGAATA+TGG - chr2.3:70575333-70575352 MS.gene047335:CDS 25.0%
!!! TAGGTTGATTACAATTTTCA+TGG - chr2.3:70574093-70574112 MS.gene047335:intron 25.0%
!!! TCATATTAGATGCACTTTTT+TGG - chr2.3:70574440-70574459 MS.gene047335:intron 25.0%
!!! TTTTTAAAGATACTTCATGG+AGG - chr2.3:70575054-70575073 MS.gene047335:intron 25.0%
!!! TTTTTTTTTGAAGAAGCACA+AGG + chr2.3:70575197-70575216 None:intergenic 25.0%
AAATGCTATTCGTCTATAGT+TGG + chr2.3:70574952-70574971 None:intergenic 30.0%
AAGTTTAGCACTATATAGCT+AGG + chr2.3:70574624-70574643 None:intergenic 30.0%
AATGGTATTCACAAACCTTA+TGG + chr2.3:70573586-70573605 None:intergenic 30.0%
ATCATCTTTACAACAGGAAA+GGG - chr2.3:70573474-70573493 MS.gene047335:intron 30.0%
CAAATTTGTGACTTAAACGT+TGG - chr2.3:70575144-70575163 MS.gene047335:intron 30.0%
CTTAGTTATTAGTAAGACCA+AGG + chr2.3:70573830-70573849 None:intergenic 30.0%
TGGTTAATTTAGTATGCACA+AGG + chr2.3:70575235-70575254 None:intergenic 30.0%
TTTAAAAAAGGAGCCAAATG+TGG + chr2.3:70574217-70574236 None:intergenic 30.0%
TTTGTAGGAGTGAAAATCAA+AGG + chr2.3:70574589-70574608 None:intergenic 30.0%
! CAGAATTTGATGACTTGAAA+AGG - chr2.3:70575381-70575400 MS.gene047335:CDS 30.0%
! GTTTTTCTATAGGTTTCATG+AGG - chr2.3:70575355-70575374 MS.gene047335:CDS 30.0%
!! TTGGAAAAATTTGTTGGTAC+AGG - chr2.3:70574705-70574724 MS.gene047335:intron 30.0%
!! TTTGATTTTCACTCCTACAA+AGG - chr2.3:70574588-70574607 MS.gene047335:intron 30.0%
!!! TTAGATGCACTTTTTTGGAT+AGG - chr2.3:70574445-70574464 MS.gene047335:intron 30.0%
AAATAGTAAGGGTCCACATT+TGG - chr2.3:70574201-70574220 MS.gene047335:intron 35.0%
AGCATGTTGGGGTAATTAAA+AGG + chr2.3:70574844-70574863 None:intergenic 35.0%
AGGCTAACTATATCCTTTGT+AGG + chr2.3:70574604-70574623 None:intergenic 35.0%
ATGACTTGAAAAGGAGTTGT+AGG - chr2.3:70575390-70575409 MS.gene047335:CDS 35.0%
ATGTGAGTTATGGAGATGAT+GGG - chr2.3:70573429-70573448 MS.gene047335:intron 35.0%
CAGTTATCAACTTGACAAGA+AGG + chr2.3:70573524-70573543 None:intergenic 35.0%
CCACTTCACATCAAATATTG+AGG + chr2.3:70573744-70573763 None:intergenic 35.0%
CCTCAATATTTGATGTGAAG+TGG - chr2.3:70573741-70573760 MS.gene047335:intron 35.0%
GACACAGGTTAAAACTGATT+TGG + chr2.3:70575175-70575194 None:intergenic 35.0%
GATCATCTTTACAACAGGAA+AGG - chr2.3:70573473-70573492 MS.gene047335:intron 35.0%
GCCCAATTGGAAAAATTTGT+TGG - chr2.3:70574699-70574718 MS.gene047335:intron 35.0%
GGAAAATGTCTGTAAGTTAC+TGG - chr2.3:70574466-70574485 MS.gene047335:intron 35.0%
GGTTTGTGAATACCATTCTA+AGG - chr2.3:70573589-70573608 MS.gene047335:intron 35.0%
TCATTTCAGAGCTTCAACAA+AGG - chr2.3:70573624-70573643 MS.gene047335:intron 35.0%
TGAAGTAGAAGTAGAAGAAG+AGG - chr2.3:70573403-70573422 MS.gene047335:CDS 35.0%
TGACTGATCATCTTTACAAC+AGG - chr2.3:70573468-70573487 MS.gene047335:intron 35.0%
! TATAGCAGTGTTACTGTGAT+TGG - chr2.3:70574912-70574931 MS.gene047335:intron 35.0%
! TTTTGTGTTGTCAACTTCGT+GGG + chr2.3:70575017-70575036 None:intergenic 35.0%
!! AGATGATGGGAAGAAGAAAA+GGG - chr2.3:70573442-70573461 MS.gene047335:intron 35.0%
!! TTGAAGCTCTGAAATGAGTA+CGG + chr2.3:70573621-70573640 None:intergenic 35.0%
ACATAGAACTCACACTCACA+GGG - chr2.3:70574784-70574803 MS.gene047335:intron 40.0%
ACTTGAAAAGGAGTTGTAGG+AGG - chr2.3:70575393-70575412 MS.gene047335:CDS 40.0%
ATTTGATGTGAAGTGGCTGA+GGG - chr2.3:70573748-70573767 MS.gene047335:intron 40.0%
CACGAAGTTGACAACACAAA+AGG - chr2.3:70575016-70575035 MS.gene047335:intron 40.0%
CTATGAGTTGTCTCTTGCTA+GGG + chr2.3:70573853-70573872 None:intergenic 40.0%
GAAGAGGAAGATGTGAGTTA+TGG - chr2.3:70573419-70573438 MS.gene047335:CDS 40.0%
GATGTGAGTTATGGAGATGA+TGG - chr2.3:70573428-70573447 MS.gene047335:intron 40.0%
GATTTAGCAACTTGCCCAAT+TGG - chr2.3:70574686-70574705 MS.gene047335:intron 40.0%
TACATAGAACTCACACTCAC+AGG - chr2.3:70574783-70574802 MS.gene047335:intron 40.0%
TATTTGATGTGAAGTGGCTG+AGG - chr2.3:70573747-70573766 MS.gene047335:intron 40.0%
TTTAGTATGCACAAGGACAC+AGG + chr2.3:70575228-70575247 None:intergenic 40.0%
TTTGTGTTGTCAACTTCGTG+GGG + chr2.3:70575016-70575035 None:intergenic 40.0%
! CTTTTGTGTTGTCAACTTCG+TGG + chr2.3:70575018-70575037 None:intergenic 40.0%
! GATATTCAGACGTGCTTTTG+CGG + chr2.3:70575445-70575464 None:intergenic 40.0%
!! GAGATGATGGGAAGAAGAAA+AGG - chr2.3:70573441-70573460 MS.gene047335:intron 40.0%
AACAGGAAAGGGTCAAAAGC+TGG - chr2.3:70573485-70573504 MS.gene047335:intron 45.0%
ATACTTCATGGAGGCAAGAC+AGG - chr2.3:70575063-70575082 MS.gene047335:intron 45.0%
ATGTCCCTATCTCAGCATGT+TGG + chr2.3:70574857-70574876 None:intergenic 45.0%
CACAAACCTTATGGCGCTTA+TGG + chr2.3:70573577-70573596 None:intergenic 45.0%
CCTAGCAAGAGACAACTCAT+AGG - chr2.3:70573851-70573870 MS.gene047335:intron 45.0%
CCTATGAGTTGTCTCTTGCT+AGG + chr2.3:70573854-70573873 None:intergenic 45.0%
GTACGGAATGAGCCTTAGAA+TGG + chr2.3:70573604-70573623 None:intergenic 45.0%
TACCCCAACATGCTGAGATA+GGG - chr2.3:70574850-70574869 MS.gene047335:intron 45.0%
TGATGGGAAGAAGAAAAGGG+TGG - chr2.3:70573445-70573464 MS.gene047335:intron 45.0%
TGTCCCTATCTCAGCATGTT+GGG + chr2.3:70574856-70574875 None:intergenic 45.0%
TTACCCCAACATGCTGAGAT+AGG - chr2.3:70574849-70574868 MS.gene047335:intron 45.0%
TTGTCAACCTGCTACATTGC+TGG + chr2.3:70573655-70573674 None:intergenic 45.0%
! TTGAAGAAGCACAAGGACAC+AGG + chr2.3:70575190-70575209 None:intergenic 45.0%
!!! ATTTTGTAAAAATAAAATAA+AGG - chr2.3:70574364-70574383 MS.gene047335:intron 5.0%
!!! TTTTGTAAAAATAAAATAAA+GGG - chr2.3:70574365-70574384 MS.gene047335:intron 5.0%
AGGAAAGGGTCAAAAGCTGG+AGG - chr2.3:70573488-70573507 MS.gene047335:intron 50.0%
ATGGATGGAAGTTGGGGTGA+GGG - chr2.3:70573344-70573363 MS.gene047335:CDS 50.0%
GCAGTACCATAAGCGCCATA+AGG - chr2.3:70573568-70573587 MS.gene047335:intron 50.0%
GTCCCTATCTCAGCATGTTG+GGG + chr2.3:70574855-70574874 None:intergenic 50.0%
GTTTGGCTGGACATAACGAG+AGG - chr2.3:70575417-70575436 MS.gene047335:CDS 50.0%
! GGTTTTGCCAGCAATGTAGC+AGG - chr2.3:70573645-70573664 MS.gene047335:intron 50.0%
!! AAGGAGTTGTAGGAGGCGTT+TGG - chr2.3:70575400-70575419 MS.gene047335:CDS 50.0%
!! AGTTGTAGGAGGCGTTTGGC+TGG - chr2.3:70575404-70575423 MS.gene047335:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 70573344 70575469 70573344 ID=MS.gene047335
chr2.3 mRNA 70573344 70575469 70573344 ID=MS.gene047335.t1;Parent=MS.gene047335
chr2.3 exon 70575147 70575469 70575147 ID=MS.gene047335.t1.exon1;Parent=MS.gene047335.t1
chr2.3 CDS 70575147 70575469 70575147 ID=cds.MS.gene047335.t1;Parent=MS.gene047335.t1
chr2.3 exon 70573344 70573446 70573344 ID=MS.gene047335.t1.exon2;Parent=MS.gene047335.t1
chr2.3 CDS 70573344 70573446 70573344 ID=cds.MS.gene047335.t1;Parent=MS.gene047335.t1
Gene Sequence

>MS.gene047335

ATGGATGGAAGTTGGGGTGAGGGAAAGAGAATCTATGAGTACAGAGAAGAAGATGAGTATGAAGTAGAAGTAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGGGAAGAAGAAAAGGGTGGTGACTGATCATCTTTACAACAGGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGTCAAGTTGATAACTGTAATGCTGATCTAAGTGTTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAATACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTGACAAACCCTAATTTCACCTTTTTTTTCCTTGAATATCTTAGTATTAGTATTCGTATATCCTTATATTGAACCTCAATATTTGATGTGAAGTGGCTGAGGGAAGATTAAGATCAGTTTTGATATGATTTGTCATTTTCAATTTTTTATTGATAAATACCTTGGTCTTACTAATAACTAAGCCCTAGCAAGAGACAACTCATAGGATGATCTTGATTGAAGTGTTTTTTTTTTCTATCAAATAAGGACCTCTAAAAAATGTTCAAAAGTGAACACTTACCATTTCTAGTAAATATTAATATTACATATTTTTCTCTTTGTGCATCATTATAAAATGGGTCATGCTAACAATTGTATGTTAAGGATTTAAAAAATAAAACAATTACTAAATTTTATGTAGAAAAAGTTATTTTTTAATATTCCAATAGGTTGATTACAATTTTCATGGTAAACTTTCTATTTTAAGCTTCTTAACAAATAAGGGTTATGGCACTTTTTAGTATTTCCCTTATAAAAATCTATCATTTTACTAAAAATAGTAAGGGTCCACATTTGGCTCCTTTTTTAAAAGTCCATATAAAACAAGTTTTTTTTAATATGGACTTCAAAAAAAATGTTCAAATGTGGACCATTACCTCTTTTATAGTAAAATATGGTGAATTTTGTAAAAATAAGATTAAGGGTAAAATACGGAAAATTTTGTAAAAATAAAATAAAGGGAAGTGGTATTTTCTTAAGAATAGTAGATTTCATCATTATAATTTTTTGGAGTTCATATTAGATGCACTTTTTTGGATAGGAAAATGTCTGTAAGTTACTGGTTGAAGTGCTTTTTTTTACTCATTTGATTTGAAGTGTATATATAAAAATGAGAGATGTGTCTAAATTTGTATATTGTCTACAATTTTTTTTCTTTCACCTTTGATTTTCACTCCTACAAAGGATATAGTTAGCCTAGCTATATAGTGCTAAACTTTTCTACTGATAGTGAATAATTATATTGTTTTAGTTCTTGAAAGATTTAGCAACTTGCCCAATTGGAAAAATTTGTTGGTACAGGATTCTTGACACTATATCCCCTGAATATTTATTGATGTTCATTGTGCATCAATTTATACATAGAACTCACACTCACAGGGTACTTAATTATTTTTAAAAACTGATGAAATTTATCCTTTTAATTACCCCAACATGCTGAGATAGGGACATACTCATATATGTGCCTTCAACTTCAAGATCATATATATAGCAGTGTTACTGTGATTGGTATTTATTCATACGCCAACTATAGACGAATAGCATTTCTACTTTAGTCATCACTTAATTTTGGAGTCATGTTTTTAATCCCCACGAAGTTGACAACACAAAAGGTGTTATCAGTTCCATTTTTTAAAGATACTTCATGGAGGCAAGACAGGAAAAAAAAATTAGGGCAAAATATATATTACTACGAAATTTTCATTGAAAGAAGTTAAACAAATTTGTGACTTAAACGTTGGATAAACCAAATCAGTTTTAACCTGTGTCCTTGTGCTTCTTCAAAAAAAAAAAAAAAAACCTGTGTCCTTGTGCATACTAAATTAACCAAAACATATACACAATGTTCTTCATATATAGGAGCAAAATTCAAGTGTACATTCCCATGATTTACAACTAATTAATTATTAACTTATAGCTTTGGAATATGGTTTTTCTATAGGTTTCATGAGGTATCAGAATTTGATGACTTGAAAAGGAGTTGTAGGAGGCGTTTGGCTGGACATAACGAGAGGCGCCGCAAAAGCACGTCTGAATATCACTGA
Protein sequence

>MS.gene047335.t1

MDGSWGEGKRIYEYREEDEYEVEVEEEEDVSYGDDGKKKRVVTDHLYNRKGSKAGGSVTPSCQVDNCNADLSVAKQYHKRHKVCEYHSKAHSVLISELQQRFCQQCSRFHEVSEFDDLKRSCRRRLAGHNERRRKSTSEYH