AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047365

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047365.t1 MTR_2g014680 94.822 309 14 2 1 308 1 308 0.0 609
MS.gene047365.t1 MTR_4g088245 61.963 326 87 9 1 302 1 313 3.27e-135 386
MS.gene047365.t1 MTR_8g069160 69.912 226 47 2 1 208 1 223 7.04e-115 332
MS.gene047365.t1 MTR_4g078875 59.155 284 101 7 1 279 1 274 4.19e-109 318
MS.gene047365.t1 MTR_2g090735 58.219 292 109 6 1 290 1 281 2.09e-106 311
MS.gene047365.t1 MTR_8g102240 61.572 229 74 5 8 226 3 227 1.18e-88 273
MS.gene047365.t1 MTR_8g102240 61.572 229 74 5 8 226 3 227 1.21e-88 273
MS.gene047365.t1 MTR_5g053430 58.763 194 77 2 27 220 34 224 2.96e-73 232
MS.gene047365.t1 MTR_5g053430 58.763 194 77 2 27 220 34 224 3.22e-73 232
MS.gene047365.t1 MTR_1g093680 50.633 237 111 4 2 235 7 240 6.86e-72 230
MS.gene047365.t1 MTR_7g033320 56.757 185 73 3 31 212 35 215 3.35e-67 218
MS.gene047365.t1 MTR_1g093670 47.291 203 86 3 32 233 7 189 7.77e-50 169
MS.gene047365.t1 MTR_4g078895 60.000 65 24 1 30 94 16 78 1.26e-19 82.0
MS.gene047365.t1 MTR_2g014700 68.889 45 14 0 118 162 44 88 4.41e-16 72.8
MS.gene047365.t1 MTR_6g084430 32.317 164 92 6 53 213 5 152 4.62e-15 74.7
MS.gene047365.t1 MTR_7g011130 30.964 197 119 4 36 231 2 182 4.87e-15 75.1
MS.gene047365.t1 MTR_3g070030 30.899 178 99 5 41 210 7 168 9.46e-15 74.3
MS.gene047365.t1 MTR_7g085260 31.667 180 92 9 46 212 10 171 1.49e-13 70.9
MS.gene047365.t1 MTR_3g435150 34.507 142 76 5 53 193 16 141 3.37e-13 69.3
MS.gene047365.t1 MTR_3g022390 83.333 36 6 0 193 228 38 73 6.37e-13 63.5
MS.gene047365.t1 MTR_3g109340 30.899 178 101 7 38 210 8 168 1.81e-12 67.4
MS.gene047365.t1 MTR_3g109340 30.726 179 101 7 38 210 8 169 2.45e-12 67.0
MS.gene047365.t1 MTR_7g005280 34.014 147 69 8 53 193 15 139 2.67e-12 66.2
MS.gene047365.t1 MTR_8g099750 32.667 150 78 8 48 193 9 139 1.69e-11 63.2
MS.gene047365.t1 MTR_3g093040 28.713 202 108 9 50 244 105 277 2.63e-11 63.9
MS.gene047365.t1 MTR_2g078700 31.548 168 88 8 53 210 23 173 2.66e-11 64.3
MS.gene047365.t1 MTR_1g069805 27.014 211 121 8 52 251 9 197 8.73e-11 62.0
MS.gene047365.t1 MTR_8g023880 33.333 156 75 8 52 192 6 147 8.95e-11 61.6
MS.gene047365.t1 MTR_8g063550 29.412 187 102 9 50 223 3 172 9.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047365.t1 AT4G28500 64.069 231 72 3 1 222 1 229 2.25e-107 315
MS.gene047365.t1 AT1G28470 58.246 285 79 7 1 249 1 281 7.26e-107 314
MS.gene047365.t1 AT4G29230 62.332 223 69 3 6 217 2 220 9.69e-92 280
MS.gene047365.t1 AT4G29230 62.332 223 69 3 6 217 2 220 3.45e-91 280
MS.gene047365.t1 AT4G29230 61.435 223 70 3 6 217 2 219 5.79e-90 277
MS.gene047365.t1 AT5G56620 59.091 220 75 5 9 217 3 218 3.45e-82 254
MS.gene047365.t1 AT5G56620 59.091 220 75 5 9 217 3 218 4.38e-82 253
MS.gene047365.t1 AT5G56620 63.452 197 58 4 32 217 25 218 4.51e-82 254
MS.gene047365.t1 AT1G25580 56.021 191 75 4 27 217 34 215 1.31e-68 220
MS.gene047365.t1 AT5G14490 50.000 200 95 4 30 228 34 229 9.39e-56 182
MS.gene047365.t1 AT5G14490 50.000 200 95 4 30 228 37 232 2.00e-55 183
MS.gene047365.t1 AT5G14490 50.000 200 95 4 30 228 34 229 2.08e-55 183
MS.gene047365.t1 AT5G14490 50.000 200 95 4 30 228 37 232 3.05e-55 183
MS.gene047365.t1 AT3G01600 48.925 186 91 3 30 214 34 216 7.29e-50 169
MS.gene047365.t1 AT3G04060 32.609 184 98 7 41 215 8 174 2.16e-19 87.4
MS.gene047365.t1 AT5G18270 34.054 185 93 10 41 215 10 175 9.94e-17 79.7
MS.gene047365.t1 AT5G18270 34.054 185 93 10 41 215 10 175 1.86e-16 79.0
MS.gene047365.t1 AT3G18400 33.099 142 78 5 53 193 5 130 4.29e-14 72.0
MS.gene047365.t1 AT1G33060 30.645 186 94 9 40 212 11 174 1.08e-13 72.0
MS.gene047365.t1 AT1G33060 30.645 186 94 9 40 212 11 174 1.13e-13 72.0
MS.gene047365.t1 AT4G35580 31.551 187 93 10 46 219 2 166 4.21e-13 70.1
MS.gene047365.t1 AT4G35580 31.551 187 93 10 46 219 2 166 4.61e-13 69.7
MS.gene047365.t1 AT4G35580 31.551 187 93 10 46 219 2 166 5.29e-13 69.7
MS.gene047365.t1 AT2G24430 28.994 169 98 6 52 214 15 167 1.25e-11 64.7
MS.gene047365.t1 AT2G24430 28.994 169 98 6 52 214 15 167 1.25e-11 64.7
MS.gene047365.t1 AT2G33480 29.947 187 97 10 41 221 7 165 1.61e-11 63.9
MS.gene047365.t1 AT2G33480 29.630 189 97 10 41 221 7 167 2.09e-11 63.5
MS.gene047365.t1 AT1G01720 30.464 151 83 6 47 194 1 132 2.18e-11 63.9
MS.gene047365.t1 AT1G76420 29.834 181 101 8 52 224 21 183 3.68e-11 63.5

Find 57 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCTCTTACATTGTTAA+TGG 0.179782 2.3:+70269250 None:intergenic
TCTAGTACTTCTACATCATT+TGG 0.314489 2.3:+70271097 None:intergenic
GAAACAAGATGGCACAAAAC+TGG 0.378351 2.3:-70269482 MS.gene047365:CDS
ATCACCCAGTTAGTCTTCTC+TGG 0.385881 2.3:+70269371 None:intergenic
TGTAGAAGTACTAGAGCATT+TGG 0.390413 2.3:-70271089 MS.gene047365:CDS
TCACTTTGAACAGCCATGTT+TGG 0.400365 2.3:+70269071 None:intergenic
GAAAACCAGAGAAGACTAAC+TGG 0.406375 2.3:-70269376 MS.gene047365:CDS
AACTATTATTCGCTTATCAA+TGG 0.414728 2.3:-70269045 MS.gene047365:CDS
GGGTGGAGTTAATGAATTGC+CGG 0.417191 2.3:-70271146 MS.gene047365:CDS
CATGTTGTCTAGGCTGTGTC+TGG 0.424066 2.3:+70269279 None:intergenic
CACATTAAGAGCTACATTGT+TGG 0.427511 2.3:+70269175 None:intergenic
ATATGCATGTTGGTCATAGC+AGG 0.451891 2.3:-70269118 MS.gene047365:CDS
CTAGTACTTCTACATCATTT+GGG 0.458512 2.3:+70271098 None:intergenic
GAGTTCATACCAACGCTTCA+AGG 0.459148 2.3:-70271019 MS.gene047365:CDS
GGGTCAAATTTCACTCCAGC+TGG 0.465906 2.3:+70271118 None:intergenic
CTTCTTCATTCATACCAAGA+TGG 0.471328 2.3:+70269339 None:intergenic
TGTTTCAATTCCTTCTTCGT+CGG 0.473936 2.3:+70269499 None:intergenic
GCCGCATGAGGGGCATTCAA+TGG 0.476343 2.3:+70271420 None:intergenic
TACACCAACTATTGCAAAGA+AGG 0.482059 2.3:-70269398 MS.gene047365:CDS
TGCTATGACCAACATGCATA+TGG 0.484398 2.3:+70269120 None:intergenic
CCTTCAAAAGCATACACAAC+AGG 0.484981 2.3:-70269548 MS.gene047365:CDS
CCAACGCTTCAAGGAGAGAA+TGG 0.494652 2.3:-70271010 MS.gene047365:CDS
GAATTGCCGGGGTTACCAGC+TGG 0.498475 2.3:-70271133 MS.gene047365:CDS
ATTGCAGGAGTTAGCAAAGA+TGG 0.500465 2.3:-70269596 MS.gene047365:intron
GGTGGAGTTAATGAATTGCC+GGG 0.501114 2.3:-70271145 MS.gene047365:CDS
CCATTCTCTCCTTGAAGCGT+TGG 0.505404 2.3:+70271010 None:intergenic
TTCAATATTATGGCCGCATG+AGG 0.506854 2.3:+70271408 None:intergenic
AAATCCCTTCACAACACCAT+TGG 0.513981 2.3:+70269439 None:intergenic
AAAATAATCAACAAAGGAAG+TGG 0.515719 2.3:-70269221 MS.gene047365:CDS
TGCAAACAAAGTAAGAGTGC+TGG 0.518334 2.3:-70269018 MS.gene047365:CDS
TCAATATTATGGCCGCATGA+GGG 0.518397 2.3:+70271409 None:intergenic
ATGGAATTACCATGTTGTCT+AGG 0.524147 2.3:+70269269 None:intergenic
AACATGGCTGTTCAAAGTGA+TGG 0.524451 2.3:-70269068 MS.gene047365:CDS
ACACACCCAGCACAATTACC+AGG 0.525873 2.3:-70270977 MS.gene047365:intron
ATTAAGAGCTACATTGTTGG+AGG 0.531511 2.3:+70269178 None:intergenic
ATCAACAAAGGAAGTGGCCA+TGG 0.542226 2.3:-70269215 MS.gene047365:CDS
GTGATGCATCAATACCATCT+TGG 0.542364 2.3:-70269353 MS.gene047365:CDS
ATGTTTGGTATAATTAGTTG+TGG 0.542896 2.3:+70269086 None:intergenic
ATGAATGAAGAAGAAAGAGA+TGG 0.549873 2.3:-70269329 MS.gene047365:CDS
AAGGTTCACACCGACGAAGA+AGG 0.550274 2.3:-70269509 MS.gene047365:CDS
TTCACTCCAGCTGGTAACCC+CGG 0.559582 2.3:+70271127 None:intergenic
CAATATTATGGCCGCATGAG+GGG 0.567135 2.3:+70271410 None:intergenic
AGGAACAAGGAAAAGAAGAA+AGG 0.568088 2.3:-70269528 MS.gene047365:CDS
AAGAAGGAATTGAAACAAGA+TGG 0.572715 2.3:-70269493 MS.gene047365:CDS
CAACAATGTAGCTCTTAATG+TGG 0.583204 2.3:-70269174 MS.gene047365:CDS
GGTATGAACTCATCAATAAG+TGG 0.587548 2.3:+70271031 None:intergenic
CAGACACAGCCTAGACAACA+TGG 0.593480 2.3:-70269278 MS.gene047365:CDS
AAATATGACCATATGCATGT+TGG 0.599378 2.3:-70269128 MS.gene047365:CDS
ACCATTGAATGCCCCTCATG+CGG 0.616642 2.3:-70271421 MS.gene047365:CDS
AGAAGTACTAGAGCATTTGG+AGG 0.620573 2.3:-70271086 MS.gene047365:CDS
ACAACTAATTATACCAAACA+TGG 0.621621 2.3:-70269084 MS.gene047365:CDS
AAGCATACACAACAGGAACA+AGG 0.626885 2.3:-70269541 MS.gene047365:CDS
AGGCTGCACTGTTATTACCA+TGG 0.642479 2.3:+70269198 None:intergenic
AGAGATTAAGAACTATGGCA+TGG 0.652933 2.3:-70271519 None:intergenic
TATGCATGTTGGTCATAGCA+GGG 0.654809 2.3:-70269117 MS.gene047365:CDS
GTGGAGTTAATGAATTGCCG+GGG 0.680068 2.3:-70271144 MS.gene047365:CDS
AAAACCAGAGAAGACTAACT+GGG 0.696934 2.3:-70269375 MS.gene047365:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAATATAAAAACC+TGG + chr2.3:70269556-70269575 None:intergenic 10.0%
!! AAAGAAAATTATTTGTCAAT+CGG - chr2.3:70270002-70270021 MS.gene047365:intron 15.0%
!! ATTAAAATGATTTAGAGATT+TGG - chr2.3:70269604-70269623 MS.gene047365:intron 15.0%
!! TAAACTAAAGGAATTAATAT+CGG + chr2.3:70269309-70269328 None:intergenic 15.0%
!! TAATATTGAAGTAAAAAATC+AGG - chr2.3:70269117-70269136 MS.gene047365:CDS 15.0%
!! TATGAAAAAATAATCAACAA+AGG - chr2.3:70271285-70271304 MS.gene047365:intron 15.0%
!!! CATTAACTTTCTTTTTATTA+TGG + chr2.3:70270086-70270105 None:intergenic 15.0%
!!! GATTTTTTACTTCAATATTA+TGG + chr2.3:70269117-70269136 None:intergenic 15.0%
!!! GTTTTTTCAATTGAATTATA+AGG - chr2.3:70269736-70269755 MS.gene047365:intron 15.0%
!!! TAATTATTTTTTGTGAATTG+TGG - chr2.3:70270056-70270075 MS.gene047365:intron 15.0%
!! AAAATTTACAAAATTGCCAT+TGG - chr2.3:70270765-70270784 MS.gene047365:intron 20.0%
!! AAATTTATGAGATCTAAATG+TGG + chr2.3:70269796-70269815 None:intergenic 20.0%
!! AAGAAAATTATTTGTCAATC+GGG - chr2.3:70270003-70270022 MS.gene047365:intron 20.0%
!! CACACAAATTAATAAACTAA+AGG + chr2.3:70269321-70269340 None:intergenic 20.0%
!! GACAATATTACATTGAAAAA+AGG - chr2.3:70270829-70270848 MS.gene047365:intron 20.0%
!! TATTGCATGTGTTAATTATT+GGG - chr2.3:70269641-70269660 MS.gene047365:intron 20.0%
!! TGAATTACTAATAATAGAGA+AGG + chr2.3:70270578-70270597 None:intergenic 20.0%
!!! AAAACAAATAGCAATTTTTC+AGG - chr2.3:70270428-70270447 MS.gene047365:intron 20.0%
!!! AATTTGCTTATATTTAGAAC+CGG - chr2.3:70269941-70269960 MS.gene047365:intron 20.0%
!!! AGTGAAATTTGCTTATATTT+AGG + chr2.3:70269839-70269858 None:intergenic 20.0%
!!! ATAAGCAAATTTCACTTTTT+AGG - chr2.3:70269843-70269862 MS.gene047365:intron 20.0%
!!! TATTTGTTTTTCCAAAACTT+GGG + chr2.3:70270418-70270437 None:intergenic 20.0%
!!! TATTTTTGTGTGAATTGAAA+AGG - chr2.3:70270478-70270497 MS.gene047365:intron 20.0%
!!! TCAAATTGCTATTCATATTT+TGG + chr2.3:70270320-70270339 None:intergenic 20.0%
!!! TTGATGATTTTTGATACATA+GGG - chr2.3:70269346-70269365 MS.gene047365:CDS 20.0%
!!! TTTGATGATTTTTGATACAT+AGG - chr2.3:70269345-70269364 MS.gene047365:CDS 20.0%
!!! TTTTCAATTGAATTATAAGG+CGG - chr2.3:70269739-70269758 MS.gene047365:intron 20.0%
! AAAATAATCAACAAAGGAAG+TGG - chr2.3:70271291-70271310 MS.gene047365:intron 25.0%
! AACTATTATTCGCTTATCAA+TGG - chr2.3:70271467-70271486 MS.gene047365:CDS 25.0%
! AAGTGAAGAAGAATTTGTAA+AGG + chr2.3:70270686-70270705 None:intergenic 25.0%
! AATTTGTAAAGGAACTCAAA+TGG + chr2.3:70270675-70270694 None:intergenic 25.0%
! ACAACTAATTATACCAAACA+TGG - chr2.3:70271428-70271447 MS.gene047365:CDS 25.0%
! AGAAAATTATTTGTCAATCG+GGG - chr2.3:70270004-70270023 MS.gene047365:intron 25.0%
! ATGTTTGGTATAATTAGTTG+TGG + chr2.3:70271429-70271448 None:intergenic 25.0%
! ATTGTTACGTAAAATATTGC+AGG - chr2.3:70270901-70270920 MS.gene047365:intron 25.0%
! CATTCAATTAATGATGTATG+TGG - chr2.3:70269868-70269887 MS.gene047365:intron 25.0%
! CATTCAATTAATGATGTATG+TGG + chr2.3:70269887-70269868 None:intergenic 25.0%
! GTATTGCATGTGTTAATTAT+TGG - chr2.3:70269640-70269659 MS.gene047365:intron 25.0%
! TGAATCTCTTACATTGTTAA+TGG + chr2.3:70271265-70271284 None:intergenic 25.0%
! TTTGATCTTAAATCTTGCTA+AGG - chr2.3:70269176-70269195 MS.gene047365:CDS 25.0%
!! AATTTGCTTATATTTAGGAC+CGG + chr2.3:70269834-70269853 None:intergenic 25.0%
!! GTTAATTAATTTGATGCATG+CGG + chr2.3:70269692-70269711 None:intergenic 25.0%
!!! ATTTGTTTTTCCAAAACTTG+GGG + chr2.3:70270417-70270436 None:intergenic 25.0%
!!! CTATTTGTTTTTCCAAAACT+TGG + chr2.3:70270419-70270438 None:intergenic 25.0%
!!! GAAATATATTGACTTGAACA+TGG - chr2.3:70270802-70270821 MS.gene047365:intron 25.0%
AAAAATCAGGTACTAATCAG+TGG - chr2.3:70269130-70269149 MS.gene047365:CDS 30.0%
AAACCAATGAATGCTTGAAT+TGG - chr2.3:70270174-70270193 MS.gene047365:intron 30.0%
AAATATGACCATATGCATGT+TGG - chr2.3:70271384-70271403 MS.gene047365:intron 30.0%
AACACATGCAATACATCAAA+CGG + chr2.3:70269634-70269653 None:intergenic 30.0%
AACATGATAGAAGTAGAGTA+AGG + chr2.3:70270617-70270636 None:intergenic 30.0%
AAGAAGGAATTGAAACAAGA+TGG - chr2.3:70271019-70271038 MS.gene047365:CDS 30.0%
AAGTTTGTATCTTCAACACT+TGG - chr2.3:70270515-70270534 MS.gene047365:intron 30.0%
ATGAATGAAGAAGAAAGAGA+TGG - chr2.3:70271183-70271202 MS.gene047365:intron 30.0%
CTAGTACTTCTACATCATTT+GGG + chr2.3:70269417-70269436 None:intergenic 30.0%
GATGTATGTGGTTCATATTA+TGG - chr2.3:70269880-70269899 MS.gene047365:intron 30.0%
TCTAGTACTTCTACATCATT+TGG + chr2.3:70269418-70269437 None:intergenic 30.0%
TGGAGAGAATAAATGTTATG+TGG + chr2.3:70269776-70269795 None:intergenic 30.0%
TGTTGAAGATACAAACTTAG+AGG + chr2.3:70270513-70270532 None:intergenic 30.0%
! ATGATTTTTGATACATAGGG+TGG - chr2.3:70269349-70269368 MS.gene047365:CDS 30.0%
! TAATTTGTCGCTGTAACATT+AGG - chr2.3:70270353-70270372 MS.gene047365:intron 30.0%
! TTTTCCTTCTTTGCAATAGT+TGG + chr2.3:70271121-70271140 None:intergenic 30.0%
!!! AAATTCGCCACTTTTTTCAT+AGG - chr2.3:70270941-70270960 MS.gene047365:intron 30.0%
!!! ACTAGAGCAATTTTTTCCAA+TGG - chr2.3:70271057-70271076 MS.gene047365:CDS 30.0%
AAAAACCTGGTAATTGTGCT+GGG + chr2.3:70269543-70269562 None:intergenic 35.0%
AAAACCAGAGAAGACTAACT+GGG - chr2.3:70271137-70271156 MS.gene047365:CDS 35.0%
AGGAACAAGGAAAAGAAGAA+AGG - chr2.3:70270984-70271003 MS.gene047365:CDS 35.0%
ATGGAATTACCATGTTGTCT+AGG + chr2.3:70271246-70271265 None:intergenic 35.0%
ATTAAGAGCTACATTGTTGG+AGG + chr2.3:70271337-70271356 None:intergenic 35.0%
CAACAATGTAGCTCTTAATG+TGG - chr2.3:70271338-70271357 MS.gene047365:intron 35.0%
CACATTAAGAGCTACATTGT+TGG + chr2.3:70271340-70271359 None:intergenic 35.0%
CTTCTTCATTCATACCAAGA+TGG + chr2.3:70271176-70271195 None:intergenic 35.0%
GGTATGAACTCATCAATAAG+TGG + chr2.3:70269484-70269503 None:intergenic 35.0%
GTTACAGCGACAAATTACTT+AGG + chr2.3:70270350-70270369 None:intergenic 35.0%
TAAAAACCTGGTAATTGTGC+TGG + chr2.3:70269544-70269563 None:intergenic 35.0%
TACACCAACTATTGCAAAGA+AGG - chr2.3:70271114-70271133 MS.gene047365:CDS 35.0%
TGTTTCAATTCCTTCTTCGT+CGG + chr2.3:70271016-70271035 None:intergenic 35.0%
TTGAAGGCCTATGAAAAAAG+TGG + chr2.3:70270951-70270970 None:intergenic 35.0%
TTGCCAATTCAAGCATTCAT+TGG + chr2.3:70270180-70270199 None:intergenic 35.0%
TTGCCATTGGCAAAAATGTA+CGG - chr2.3:70270778-70270797 MS.gene047365:intron 35.0%
TTTCTTTGCTTGCAATTGCA+AGG + chr2.3:70269989-70270008 None:intergenic 35.0%
! CTCAAGCTCTGGTAATTAAA+AGG - chr2.3:70269204-70269223 MS.gene047365:CDS 35.0%
! TGCTTATATTTAGAACCGGA+GGG - chr2.3:70269945-70269964 MS.gene047365:intron 35.0%
! TTGCTTATATTTAGAACCGG+AGG - chr2.3:70269944-70269963 MS.gene047365:intron 35.0%
!! ATTTATAGAAGTACTCCCTC+CGG - chr2.3:70269812-70269831 MS.gene047365:intron 35.0%
!! TGTAGAAGTACTAGAGCATT+TGG - chr2.3:70269423-70269442 MS.gene047365:CDS 35.0%
!!! TTTTCCAATGGTGTTGTGAA+GGG - chr2.3:70271069-70271088 MS.gene047365:CDS 35.0%
!!! TTTTTCCAATGGTGTTGTGA+AGG - chr2.3:70271068-70271087 MS.gene047365:CDS 35.0%
AAATCCCTTCACAACACCAT+TGG + chr2.3:70271076-70271095 None:intergenic 40.0%
AACATGGCTGTTCAAAGTGA+TGG - chr2.3:70271444-70271463 MS.gene047365:CDS 40.0%
AAGCATACACAACAGGAACA+AGG - chr2.3:70270971-70270990 MS.gene047365:intron 40.0%
ATATGCATGTTGGTCATAGC+AGG - chr2.3:70271394-70271413 MS.gene047365:intron 40.0%
ATTGCAGGAGTTAGCAAAGA+TGG - chr2.3:70270916-70270935 MS.gene047365:intron 40.0%
GAAAAAGCCCCCATCAAAAT+AGG + chr2.3:70270235-70270254 None:intergenic 40.0%
GAAAACCAGAGAAGACTAAC+TGG - chr2.3:70271136-70271155 MS.gene047365:CDS 40.0%
GAAAATTACACACTCTAGGC+TGG + chr2.3:70270110-70270129 None:intergenic 40.0%
GAAACAAGATGGCACAAAAC+TGG - chr2.3:70271030-70271049 MS.gene047365:CDS 40.0%
GCCTGAAAATTACACACTCT+AGG + chr2.3:70270114-70270133 None:intergenic 40.0%
GTATCTTCAACACTTGGTCA+AGG - chr2.3:70270521-70270540 MS.gene047365:intron 40.0%
GTGATGCATCAATACCATCT+TGG - chr2.3:70271159-70271178 MS.gene047365:intron 40.0%
TAATTACCAGAGCTTGAGAC+TGG + chr2.3:70269202-70269221 None:intergenic 40.0%
TATGCATGTTGGTCATAGCA+GGG - chr2.3:70271395-70271414 MS.gene047365:intron 40.0%
TCAATATTATGGCCGCATGA+GGG + chr2.3:70269106-70269125 None:intergenic 40.0%
TCACTTTGAACAGCCATGTT+TGG + chr2.3:70271444-70271463 None:intergenic 40.0%
TGCTATGACCAACATGCATA+TGG + chr2.3:70271395-70271414 None:intergenic 40.0%
TGCTTGAATTGGCAATGCAA+TGG - chr2.3:70270185-70270204 MS.gene047365:intron 40.0%
TGTAACACACTTCAACGAGT+TGG + chr2.3:70270152-70270171 None:intergenic 40.0%
TTCAATATTATGGCCGCATG+AGG + chr2.3:70269107-70269126 None:intergenic 40.0%
! AACAATTGCTCCCCAAGTTT+TGG - chr2.3:70270404-70270423 MS.gene047365:intron 40.0%
! CCTGTTGTGTATGCTTTTGA+AGG + chr2.3:70270967-70270986 None:intergenic 40.0%
! CCTTCAAAAGCATACACAAC+AGG - chr2.3:70270964-70270983 MS.gene047365:intron 40.0%
! GCCTAGAGTGTGTAATTTTC+AGG - chr2.3:70270110-70270129 MS.gene047365:intron 40.0%
! TCTCCGTACATTTTTGCCAA+TGG + chr2.3:70270784-70270803 None:intergenic 40.0%
! TGCAAACAAAGTAAGAGTGC+TGG - chr2.3:70271494-70271513 MS.gene047365:CDS 40.0%
! TGCTTATATTTAGGACCGGA+GGG + chr2.3:70269830-70269849 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG + chr2.3:70269831-70269850 None:intergenic 40.0%
!! AGAAGTACTAGAGCATTTGG+AGG - chr2.3:70269426-70269445 MS.gene047365:CDS 40.0%
!!! ATAGGGGCATCCTATTTTGA+TGG - chr2.3:70270222-70270241 MS.gene047365:intron 40.0%
!!! TAGGGGCATCCTATTTTGAT+GGG - chr2.3:70270223-70270242 MS.gene047365:intron 40.0%
AAGTAAAGACCTACTCCCTC+CGG + chr2.3:70269963-70269982 None:intergenic 45.0%
AGACACGATCTTGTTCTGCA+CGG - chr2.3:70269664-70269683 MS.gene047365:intron 45.0%
AGGCTGCACTGTTATTACCA+TGG + chr2.3:70271317-70271336 None:intergenic 45.0%
ATCAACAAAGGAAGTGGCCA+TGG - chr2.3:70271297-70271316 MS.gene047365:intron 45.0%
ATGGCCACCAAACTCTCAAT+AGG - chr2.3:70270204-70270223 MS.gene047365:intron 45.0%
CAATATTATGGCCGCATGAG+GGG + chr2.3:70269105-70269124 None:intergenic 45.0%
GAGTTCATACCAACGCTTCA+AGG - chr2.3:70269493-70269512 MS.gene047365:CDS 45.0%
GGGTGGAGTTAATGAATTGC+CGG - chr2.3:70269366-70269385 MS.gene047365:CDS 45.0%
GGTGGAGTTAATGAATTGCC+GGG - chr2.3:70269367-70269386 MS.gene047365:CDS 45.0%
GTGGAGTTAATGAATTGCCG+GGG - chr2.3:70269368-70269387 MS.gene047365:CDS 45.0%
TGGCCACCAAACTCTCAATA+GGG - chr2.3:70270205-70270224 MS.gene047365:intron 45.0%
TTGTCGAATCTCTACGACTC+TGG - chr2.3:70269245-70269264 MS.gene047365:CDS 45.0%
! TATTTAGAACCGGAGGGAGT+AGG - chr2.3:70269951-70269970 MS.gene047365:intron 45.0%
!! ATCACCCAGTTAGTCTTCTC+TGG + chr2.3:70271144-70271163 None:intergenic 45.0%
!!! AGGGGCATCCTATTTTGATG+GGG - chr2.3:70270224-70270243 MS.gene047365:intron 45.0%
AAGGTTCACACCGACGAAGA+AGG - chr2.3:70271003-70271022 MS.gene047365:CDS 50.0%
ACACACCCAGCACAATTACC+AGG - chr2.3:70269535-70269554 MS.gene047365:CDS 50.0%
ACCATTGAATGCCCCTCATG+CGG - chr2.3:70269091-70269110 MS.gene047365:CDS 50.0%
CAGACACAGCCTAGACAACA+TGG - chr2.3:70271234-70271253 MS.gene047365:intron 50.0%
CATGTTGTCTAGGCTGTGTC+TGG + chr2.3:70271236-70271255 None:intergenic 50.0%
CCAACGCTTCAAGGAGAGAA+TGG - chr2.3:70269502-70269521 MS.gene047365:CDS 50.0%
CCATTCTCTCCTTGAAGCGT+TGG + chr2.3:70269505-70269524 None:intergenic 50.0%
GGATGCCCCTATTGAGAGTT+TGG + chr2.3:70270214-70270233 None:intergenic 50.0%
GGCCACCAAACTCTCAATAG+GGG - chr2.3:70270206-70270225 MS.gene047365:intron 50.0%
GGGTCAAATTTCACTCCAGC+TGG + chr2.3:70269397-70269416 None:intergenic 50.0%
TGCCCCTATTGAGAGTTTGG+TGG + chr2.3:70270211-70270230 None:intergenic 50.0%
!!! GGGGCATCCTATTTTGATGG+GGG - chr2.3:70270225-70270244 MS.gene047365:intron 50.0%
CTAAGGCCAGTCTCAAGCTC+TGG - chr2.3:70269193-70269212 MS.gene047365:CDS 55.0%
TTCACTCCAGCTGGTAACCC+CGG + chr2.3:70269388-70269407 None:intergenic 55.0%
GAATTGCCGGGGTTACCAGC+TGG - chr2.3:70269379-70269398 MS.gene047365:CDS 60.0%
!! GCCGCATGAGGGGCATTCAA+TGG + chr2.3:70269095-70269114 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 70269007 70271527 70269007 ID=MS.gene047365
chr2.3 mRNA 70269007 70271527 70269007 ID=MS.gene047365.t1;Parent=MS.gene047365
chr2.3 exon 70271396 70271527 70271396 ID=MS.gene047365.t1.exon1;Parent=MS.gene047365.t1
chr2.3 CDS 70271396 70271527 70271396 ID=cds.MS.gene047365.t1;Parent=MS.gene047365.t1
chr2.3 exon 70270978 70271167 70270978 ID=MS.gene047365.t1.exon2;Parent=MS.gene047365.t1
chr2.3 CDS 70270978 70271167 70270978 ID=cds.MS.gene047365.t1;Parent=MS.gene047365.t1
chr2.3 exon 70269007 70269611 70269007 ID=MS.gene047365.t1.exon3;Parent=MS.gene047365.t1
chr2.3 CDS 70269007 70269611 70269007 ID=cds.MS.gene047365.t1;Parent=MS.gene047365.t1
Gene Sequence

>MS.gene047365

ATGGCATGGTGCAATGATAAAGATAACAACAACTCTGATGTCACTGATAACATAAAGCTCAATGAAGAAATTGATCAAAATCAAACCATTGAATGCCCCTCATGCGGCCATAATATTGAAGTAAAAAATCAGGTACTAATCAGTGGTTTTATTTGTTTTACTTATTTAGTTTGATCTTAAATCTTGCTAAGGCCAGTCTCAAGCTCTGGTAATTAAAAGGACTCAACAACATAAAACTTTGTCGAATCTCTACGACTCTGGTTAAATTTGTTGTTAGTTTTTTTTTGTTTGTTTATGCACCGATATTAATTCCTTTAGTTTATTAATTTGTGTGTAAATTTGATGATTTTTGATACATAGGGTGGAGTTAATGAATTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGATGTAGAAGTACTAGAGCATTTGGAGGCAAAAGTGATGTCTGATGTTCGCAAGATTCATCCACTTATTGATGAGTTCATACCAACGCTTCAAGGAGAGAATGGAATTTGTTATACACACCCAGCACAATTACCAGGTTTTTATATTTAATTAATTTAATTTAATGTATTTGATTTTTGTTTAATTAAAATGATTTAGAGATTTGGAATACCGTTTGATGTATTGCATGTGTTAATTATTGGGAGACACGATCTTGTTCTGCACGGTACCGCATGCATCAAATTAATTAACTAATTAATGTTTTACAATTTAATAGTTTTTTCAATTGAATTATAAGGCGGTTTGAGCATGACCACATAACATTTATTCTCTCCACATTTAGATCTCATAAATTTATAGAAGTACTCCCTCCGGTCCTAAATATAAGCAAATTTCACTTTTTAGGTTCATTCAATTAATGATGTATGTGGTTCATATTATGGACCACATACATCATTAATTGAATGAATGTAAAAAGTCAAATTTGCTTATATTTAGAACCGGAGGGAGTAGGTCTTTACTTAGTCCTTGCAATTGCAAGCAAAGAAAATTATTTGTCAATCGGGGTTGAGTTGAGTCTTTTTATTAACTTATGATAATTATTTTTTGTGAATTGTGGAAAACCATAATAAAAAGAAAGTTAATGTCCAGCCTAGAGTGTGTAATTTTCAGGCATCTCTTTCATATAACCAACTCGTTGAAGTGTGTTACAAGAAACCAATGAATGCTTGAATTGGCAATGCAATGGCCACCAAACTCTCAATAGGGGCATCCTATTTTGATGGGGGCTTTTTCAACGTCTTACTGTATGATGATATATATAACTAACTAATAAGCAGATTTTTTTAGATTTAACTCCAAAATATGAATAGCAATTTGAAATTGAGCCTAAGTAATTTGTCGCTGTAACATTAGGTTAATTGTTAATGAAGTTAAAAACAATTAACAATTGCTCCCCAAGTTTTGGAAAAACAAATAGCAATTTTTCAGGATATTGATATATAAATATATTTGTTAATATTTTTGTGTGAATTGAAAAGGTTAAATTAACCTCTAAGTTTGTATCTTCAACACTTGGTCAAGGAATTAAGAGACAGATAAATTTTACTATTTTTCCTTCTCTATTATTAGTAATTCATTTTTTAGTACTGATTCCTTACTCTACTTCTATCATGTTCATCATATAGTGTTATGCATGATTCTCATATCTAACCATTTGAGTTCCTTTACAAATTCTTCTTCACTTCTAAAATAATTGTTGTTAATGTCATAGTTTAAATAAATAAAACAATATTGCAATTTTACAAAATTTACAAAATTGCCATTGGCAAAAATGTACGGAGAAATATATTGACTTGAACATGGTATAGACAATATTACATTGAAAAAAGGTAAAACGACACTTATTTTAAAAGAGACGAGTATGCAAGAAGTTGATATAATTGTTACGTAAAATATTGCAGGAGTTAGCAAAGATGGTCAAATTCGCCACTTTTTTCATAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACCGACGAAGAAGGAATTGAAACAAGATGGCACAAAACTGGAAAAACTAGAGCAATTTTTTCCAATGGTGTTGTGAAGGGATTTAAGAAGATACTTGTACTCTACACCAACTATTGCAAAGAAGGAAAACCAGAGAAGACTAACTGGGTGATGCATCAATACCATCTTGGTATGAATGAAGAAGAAAGAGATGGAGAATTTGTTGCTTCAAAGATCTTCTACCAGACACAGCCTAGACAACATGGTAATTCCATTAACAATGTAAGAGATTCATATGAAAAAATAATCAACAAAGGAAGTGGCCATGGTAATAACAGTGCAGCCTCCAACAATGTAGCTCTTAATGTGGAATGCTACAATGCTTGTTATACAAAATATGACCATATGCATGTTGGTCATAGCAGGGAAAGTACTCCACAACTAATTATACCAAACATGGCTGTTCAAAGTGATGGAACTATTATTCGCTTATCAATGGATCATGCAAACAAAGTAAGAGTGCTGGAGAGAAAGTAA
Protein sequence

>MS.gene047365.t1

MAWCNDKDNNNSDVTDNIKLNEEIDQNQTIECPSCGHNIEVKNQGGVNELPGLPAGVKFDPNDVEVLEHLEAKVMSDVRKIHPLIDEFIPTLQGENGICYTHPAQLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGIETRWHKTGKTRAIFSNGVVKGFKKILVLYTNYCKEGKPEKTNWVMHQYHLGMNEEERDGEFVASKIFYQTQPRQHGNSINNVRDSYEKIINKGSGHGNNSAASNNVALNVECYNACYTKYDHMHVGHSRESTPQLIIPNMAVQSDGTIIRLSMDHANKVRVLERK