AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047383

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047383.t1 MTR_2g015000 97.356 416 11 0 1 416 1 416 0.0 829
MS.gene047383.t1 MTR_7g025010 45.434 438 172 18 1 405 1 404 1.93e-87 277
MS.gene047383.t1 MTR_4g088070 39.948 388 178 13 42 405 16 372 7.08e-62 206
MS.gene047383.t1 MTR_4g088080 39.298 285 124 13 46 314 31 282 4.76e-34 129
MS.gene047383.t1 MTR_6g027390 66.667 60 20 0 47 106 24 83 6.11e-23 98.6
MS.gene047383.t1 MTR_7g086940 59.341 91 36 1 39 129 13 102 3.40e-22 95.9
MS.gene047383.t1 MTR_7g086940 46.269 67 36 0 341 407 201 267 1.52e-14 73.9
MS.gene047383.t1 MTR_4g084550 37.805 82 51 0 50 131 59 140 5.48e-18 81.6
MS.gene047383.t1 MTR_4g088065 42.400 125 52 3 64 188 134 238 7.69e-16 77.0
MS.gene047383.t1 MTR_8g107210 35.238 105 68 0 55 159 96 200 1.64e-15 77.8
MS.gene047383.t1 MTR_3g462480 42.708 96 46 1 311 406 4 90 4.17e-15 70.9
MS.gene047383.t1 MTR_1g115315 44.615 65 36 0 53 117 83 147 6.07e-15 74.7
MS.gene047383.t1 MTR_5g081990 45.312 64 35 0 55 118 33 96 6.27e-15 73.2
MS.gene047383.t1 MTR_1g115315 44.615 65 36 0 53 117 83 147 6.62e-15 74.7
MS.gene047383.t1 MTR_3g115620 37.363 91 56 1 24 114 52 141 6.68e-15 73.9
MS.gene047383.t1 MTR_7g060630 43.836 73 41 0 49 121 2 74 1.89e-14 72.4
MS.gene047383.t1 MTR_5g021930 42.667 75 42 1 49 122 24 98 4.02e-14 73.2
MS.gene047383.t1 MTR_1g019130 50.000 60 30 0 55 114 90 149 4.12e-14 71.6
MS.gene047383.t1 MTR_4g063735 50.000 60 30 0 55 114 25 84 6.82e-14 71.6
MS.gene047383.t1 MTR_1g019130 50.000 60 30 0 55 114 90 149 1.05e-13 70.9
MS.gene047383.t1 MTR_7g023810 42.424 66 38 0 49 114 62 127 2.03e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047383.t1 AT5G45980 36.451 417 162 11 1 406 1 325 3.74e-74 234
MS.gene047383.t1 AT2G33880 85.714 126 14 3 1 124 1 124 2.13e-68 221
MS.gene047383.t1 AT2G33880 85.714 126 14 3 1 124 1 124 2.57e-68 221
MS.gene047383.t1 AT3G03660 64.286 70 24 1 38 106 15 84 1.58e-23 99.8
MS.gene047383.t1 AT3G03660 52.632 57 27 0 350 406 208 264 4.86e-13 69.3
MS.gene047383.t1 AT3G03660 64.286 70 24 1 38 106 15 84 2.54e-23 99.8
MS.gene047383.t1 AT3G03660 52.632 57 27 0 350 406 237 293 7.42e-13 69.3
MS.gene047383.t1 AT3G03660 64.286 70 24 1 38 106 15 84 4.44e-23 99.0
MS.gene047383.t1 AT3G03660 53.571 56 26 0 351 406 209 264 1.58e-12 68.2
MS.gene047383.t1 AT3G03660 64.286 70 24 1 38 106 15 84 6.64e-23 99.0
MS.gene047383.t1 AT3G03660 53.571 56 26 0 351 406 238 293 2.15e-12 68.2
MS.gene047383.t1 AT5G17810 67.797 59 18 1 49 106 14 72 3.54e-21 92.8
MS.gene047383.t1 AT5G17810 50.877 57 28 0 350 406 207 263 1.86e-13 70.5
MS.gene047383.t1 AT5G17810 67.797 59 18 1 49 106 14 72 3.64e-21 92.8
MS.gene047383.t1 AT5G17810 50.877 57 28 0 350 406 208 264 1.82e-13 70.5
MS.gene047383.t1 AT5G17810 67.797 59 18 1 49 106 14 72 3.64e-21 92.8
MS.gene047383.t1 AT5G17810 50.877 57 28 0 350 406 208 264 1.82e-13 70.5
MS.gene047383.t1 AT5G05770 34.066 91 60 0 55 145 29 119 1.12e-15 73.6
MS.gene047383.t1 AT3G18010 48.387 62 32 0 55 116 76 137 5.74e-15 76.3
MS.gene047383.t1 AT2G28610 48.529 68 35 0 49 116 2 69 8.33e-15 74.3
MS.gene047383.t1 AT1G20700 46.774 62 33 0 53 114 31 92 1.24e-14 71.2
MS.gene047383.t1 AT3G11260 45.312 64 35 0 55 118 24 87 1.44e-14 72.0
MS.gene047383.t1 AT1G20700 46.774 62 33 0 53 114 93 154 2.55e-14 72.0
MS.gene047383.t1 AT1G20700 46.774 62 33 0 53 114 93 154 2.60e-14 72.0
MS.gene047383.t1 AT1G46480 50.000 60 30 0 55 114 90 149 3.75e-14 71.2
MS.gene047383.t1 AT4G35550 45.161 62 34 0 53 114 97 158 1.36e-13 70.9
MS.gene047383.t1 AT1G46480 50.000 60 30 0 55 114 90 149 1.79e-13 70.5
MS.gene047383.t1 AT2G01500 50.909 55 27 0 55 109 61 115 5.95e-13 69.3
MS.gene047383.t1 AT5G46010 47.619 63 32 1 51 112 50 112 1.13e-12 64.7
MS.gene047383.t1 AT5G59340 43.333 60 34 0 55 114 14 73 1.31e-12 68.2
MS.gene047383.t1 AT2G17950 46.032 63 33 1 55 116 38 100 2.25e-12 67.8

Find 100 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTCTGATTCTGATTC+TGG 0.081403 2.3:+70052815 None:intergenic
GAAATTTGAGGAAGTGAATT+AGG 0.138466 2.3:+70052772 None:intergenic
TGCTTCTTGATTTGCGGTTT+TGG 0.159712 2.3:+70052881 None:intergenic
TCTGATTCTTGTTCTGGTTT+TGG 0.210118 2.3:+70052839 None:intergenic
GTGGCCTTTGAGGTTGCTTC+TGG 0.210381 2.3:-70051531 MS.gene047383:CDS
TCTGGTTCTGATTCTTGTTC+TGG 0.215529 2.3:+70052833 None:intergenic
CTTGAAGCTATCTTCAATTC+TGG 0.223036 2.3:-70052997 MS.gene047383:CDS
TTTAATGTTCGTGCGGCATT+TGG 0.234206 2.3:-70051504 MS.gene047383:CDS
ATGCGGATTTGTTCTGGTTT+TGG 0.247339 2.3:+70053021 None:intergenic
TTGGCAGGTATTAATTCTTT+TGG 0.251759 2.3:+70052703 None:intergenic
TTAATGTTCGTGCGGCATTT+GGG 0.270781 2.3:-70051503 MS.gene047383:CDS
CCTTGTGATGTAACATTGTT+AGG 0.298506 2.3:+70052490 None:intergenic
TTTGGATTCCACCTTGGCTT+TGG 0.309423 2.3:+70053039 None:intergenic
CCATTGGTGATGAGTGTTGC+AGG 0.323664 2.3:+70053300 None:intergenic
TCAAGTATGCGGATTTGTTC+TGG 0.334510 2.3:+70053015 None:intergenic
AATGCCGCACGAACATTAAA+AGG 0.340006 2.3:+70051507 None:intergenic
GGCACAACATCATTGATGTT+AGG 0.346091 2.3:+70052661 None:intergenic
GCTGAAAATATGTTTGGTTT+TGG 0.348978 2.3:+70052614 None:intergenic
ATCTTCCTTATCTCTTCTCT+TGG 0.351542 2.3:+70052961 None:intergenic
CTGTTCTTGATCTTTCTTTG+AGG 0.356529 2.3:+70052342 None:intergenic
ACAGAAGCAGTTGGAGAATT+AGG 0.358074 2.3:+70052640 None:intergenic
TTTGAGGCTGAAAATATGTT+TGG 0.371353 2.3:+70052608 None:intergenic
TTCCACCTTGGCTTTGGCTC+AGG 0.373630 2.3:+70053045 None:intergenic
TTCCTTATCTCTTCTCTTGG+TGG 0.377528 2.3:+70052964 None:intergenic
AAATTTGAGGAAGTGAATTA+GGG 0.386654 2.3:+70052773 None:intergenic
CCTTGCACTTGAGAAATGAT+AGG 0.417012 2.3:+70052199 None:intergenic
GTAGGATGTAAAACAGTAGT+AGG 0.421080 2.3:+70052250 None:intergenic
CCAGAATCAGAATCAGAATC+AGG 0.428113 2.3:-70052815 MS.gene047383:CDS
TATGCTTGCTTCTTGATTTG+CGG 0.428894 2.3:+70052875 None:intergenic
GCACAACATCATTGATGTTA+GGG 0.443675 2.3:+70052662 None:intergenic
TATCAATGATGTGGCCTTTG+AGG 0.444367 2.3:-70051541 MS.gene047383:CDS
AGAGCACAGTTGCAAGAGTA+TGG 0.448490 2.3:-70052937 MS.gene047383:CDS
TAGTGCAGTTACCAGTGTTA+TGG 0.449318 2.3:+70052410 None:intergenic
GGCTTAGACTTAAACATGCT+TGG 0.459758 2.3:+70053322 None:intergenic
TTACTTGTGGTGGTGGAAGA+AGG 0.462598 2.3:+70052575 None:intergenic
TTCTTCCCAGTGCAACATCA+TGG 0.463536 2.3:-70052529 MS.gene047383:CDS
CTCAAAGAAAGATCAAGAAC+AGG 0.467360 2.3:-70052341 MS.gene047383:CDS
AGATAATTACCTGAGGAGTA+AGG 0.470017 2.3:+70053229 None:intergenic
ATCTCAGGCATTGGTGAACC+AGG 0.475607 2.3:-70051588 MS.gene047383:intron
GCTGTTCTTGTACATCAAAC+TGG 0.484452 2.3:-70051474 MS.gene047383:CDS
GAAAATAACATGCACCATGC+TGG 0.488247 2.3:+70051406 None:intergenic
CCTAACAATGTTACATCACA+AGG 0.488908 2.3:-70052490 MS.gene047383:CDS
CCAAGGGAAAATACTTTGGC+AGG 0.496441 2.3:+70052688 None:intergenic
CCTTGTCCATGATGTTGCAC+TGG 0.500743 2.3:+70052523 None:intergenic
TGCTGACCATGTGGTTGAGC+AGG 0.506086 2.3:+70052436 None:intergenic
GAAACCAAGGGAAAATACTT+TGG 0.514758 2.3:+70052684 None:intergenic
GATAATTACCTGAGGAGTAA+GGG 0.515469 2.3:+70053230 None:intergenic
CACAGAACCCCTTACTCCTC+AGG 0.516334 2.3:-70053238 MS.gene047383:intron
AGTGAAGAGTGACACCATAC+TGG 0.516391 2.3:+70051433 None:intergenic
TGTTCATGATCTCACTAAGC+AGG 0.516785 2.3:+70052380 None:intergenic
GTGATGGTGGAGGAAGTAGT+AGG 0.517817 2.3:+70052232 None:intergenic
TAATGTTCGTGCGGCATTTG+GGG 0.529446 2.3:-70051502 MS.gene047383:CDS
AAGAAGAAAGTCTCAGTAGC+TGG 0.533457 2.3:+70052547 None:intergenic
GGTACAGTAGCAGAAATTTG+AGG 0.535619 2.3:+70052760 None:intergenic
GGTGCAGTTACTTGTGGTGG+TGG 0.536505 2.3:+70052568 None:intergenic
ATCCACCAAGAGAAGAGATA+AGG 0.537259 2.3:-70052966 MS.gene047383:CDS
TTGCAAGAGTATGGTCAAGT+TGG 0.545746 2.3:-70052928 MS.gene047383:CDS
TACTTGTGGTGGTGGAAGAA+GGG 0.555078 2.3:+70052576 None:intergenic
AGCTATCTTCAATTCTGGAA+TGG 0.556620 2.3:-70052992 MS.gene047383:CDS
GCAAACAGATGTTCAGATGT+GGG 0.556845 2.3:+70052287 None:intergenic
GAGGAAGATGAAGAAGATGA+AGG 0.560821 2.3:+70052739 None:intergenic
CCTGTGTTAACAAACCAGTA+TGG 0.574262 2.3:-70051447 MS.gene047383:CDS
AGGTGATTGAACAGTGATGG+TGG 0.575194 2.3:+70052219 None:intergenic
GGCAAACAGATGTTCAGATG+TGG 0.578783 2.3:+70052286 None:intergenic
AACAGTAGTAGGAGTTGTGG+CGG 0.580421 2.3:+70052261 None:intergenic
CTTGTCCATGATGTTGCACT+GGG 0.582831 2.3:+70052524 None:intergenic
CATTGATGTTAGGGAAACCA+AGG 0.582855 2.3:+70052671 None:intergenic
ACTCTTCACTCACTCCAGCA+TGG 0.587267 2.3:-70051420 MS.gene047383:CDS
CATTGGTGATGAGTGTTGCA+GGG 0.588949 2.3:+70053301 None:intergenic
GTAGCTGGTGCAGTTACTTG+TGG 0.590783 2.3:+70052562 None:intergenic
AGTTGATGTCATGCTGCCAT+TGG 0.593818 2.3:+70053284 None:intergenic
GAAGTCCTGAGCCAAAGCCA+AGG 0.598879 2.3:-70053050 MS.gene047383:CDS
AAACAGATGTTCAGATGTGG+GGG 0.599793 2.3:+70052289 None:intergenic
CCTATCATTTCTCAAGTGCA+AGG 0.604894 2.3:-70052199 MS.gene047383:intron
TGAAGATAGCTTCAAGTATG+CGG 0.609197 2.3:+70053004 None:intergenic
ATAATTACCTGAGGAGTAAG+GGG 0.610710 2.3:+70053231 None:intergenic
CAAACAGATGTTCAGATGTG+GGG 0.614296 2.3:+70052288 None:intergenic
TAAAACAGTAGTAGGAGTTG+TGG 0.614312 2.3:+70052258 None:intergenic
CCATACTGGTTTGTTAACAC+AGG 0.617631 2.3:+70051447 None:intergenic
GCTGGTGCAGTTACTTGTGG+TGG 0.617972 2.3:+70052565 None:intergenic
AGGTCCAGAAGCAACCTCAA+AGG 0.623758 2.3:+70051527 None:intergenic
GTAGTAGGAGTTGTGGCGGG+TGG 0.627094 2.3:+70052265 None:intergenic
ATGGTTCCTGCTCAACCACA+TGG 0.630924 2.3:-70052442 MS.gene047383:CDS
TGGCTTCATCAAATAGACAC+TGG 0.631121 2.3:-70053345 MS.gene047383:CDS
CCAGTGCAACATCATGGACA+AGG 0.635853 2.3:-70052523 MS.gene047383:CDS
GATAGGTGATTGAACAGTGA+TGG 0.637240 2.3:+70052216 None:intergenic
ACAGTAGTAGGAGTTGTGGC+GGG 0.646909 2.3:+70052262 None:intergenic
GTCCTGAGCCAAAGCCAAGG+TGG 0.648407 2.3:-70053047 MS.gene047383:CDS
CCTGCAACACTCATCACCAA+TGG 0.655110 2.3:-70053300 MS.gene047383:CDS
ATTGATGTTAGGGAAACCAA+GGG 0.665295 2.3:+70052672 None:intergenic
CTAACAATGTTACATCACAA+GGG 0.668058 2.3:-70052489 MS.gene047383:CDS
GGTCAGCAACACCATAACAC+TGG 0.670176 2.3:-70052421 MS.gene047383:CDS
TTATGGTGTTGCTGACCATG+TGG 0.673188 2.3:+70052427 None:intergenic
AGTGAGATCATGAACAACCA+TGG 0.690840 2.3:-70052373 MS.gene047383:CDS
TGGTTGAGCAGGAACCATGT+TGG 0.698137 2.3:+70052447 None:intergenic
TCTTTGAGGAATTAACACCA+TGG 0.698293 2.3:+70052356 None:intergenic
AGTGGTGTTTATCAATGATG+TGG 0.701398 2.3:-70051550 MS.gene047383:CDS
TGATTGAACAGTGATGGTGG+AGG 0.713068 2.3:+70052222 None:intergenic
AACAGATGTTCAGATGTGGG+GGG 0.713218 2.3:+70052290 None:intergenic
AGGTGTTGCTGCAAAATCAG+TGG 0.717993 2.3:-70051568 MS.gene047383:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAACTAAATAATTT+GGG + chr2.3:70052545-70052564 None:intergenic 10.0%
!! AAGTATATAGATGAAATAAT+AGG + chr2.3:70052769-70052788 None:intergenic 15.0%
!! GTTAAAGAAACTAAATAATT+TGG + chr2.3:70052546-70052565 None:intergenic 15.0%
!! TAAAGAAACTAAATAATTTG+GGG + chr2.3:70052544-70052563 None:intergenic 15.0%
!! TATGAAAAATAAATTAGAGA+AGG + chr2.3:70053306-70053325 None:intergenic 15.0%
!! AATTTAGAGATGAAAATATG+TGG + chr2.3:70052578-70052597 None:intergenic 20.0%
!! TTGTTACAAATTAGACATTA+GGG + chr2.3:70051503-70051522 None:intergenic 20.0%
!!! ATTTTTTTTCTTCTTCTTTG+TGG - chr2.3:70051535-70051554 MS.gene047383:CDS 20.0%
!!! CATAGTTTTTGAGATAAAAA+TGG - chr2.3:70052821-70052840 MS.gene047383:CDS 20.0%
!!! TAAAAATGGTAATGTATGTA+TGG - chr2.3:70052835-70052854 MS.gene047383:CDS 20.0%
!!! TTTAGTATTAGTTTGACTTT+TGG - chr2.3:70052962-70052981 MS.gene047383:CDS 20.0%
! AAAATGTAGATAATTACCTG+AGG + chr2.3:70051407-70051426 None:intergenic 25.0%
! AAATTTGAGGAAGTGAATTA+GGG + chr2.3:70051856-70051875 None:intergenic 25.0%
! ATCTCAAAAACTATGTTCTT+AGG + chr2.3:70052816-70052835 None:intergenic 25.0%
! CTTGTTACAAATTAGACATT+AGG + chr2.3:70051504-70051523 None:intergenic 25.0%
!!! ATATTTTGTTTTGCAGATGT+AGG - chr2.3:70053325-70053344 MS.gene047383:CDS 25.0%
!!! TATTTTGTTTTGCAGATGTA+GGG - chr2.3:70053326-70053345 MS.gene047383:CDS 25.0%
ACTATGTTCTTAGGTTCTAT+AGG + chr2.3:70052807-70052826 None:intergenic 30.0%
AGATTAATGTGAATAAGACG+TGG - chr2.3:70052881-70052900 MS.gene047383:CDS 30.0%
ATAAACTAGTCAAGATCTTG+TGG + chr2.3:70052721-70052740 None:intergenic 30.0%
CTAACAATGTTACATCACAA+GGG - chr2.3:70052137-70052156 MS.gene047383:intron 30.0%
GAAATTTGAGGAAGTGAATT+AGG + chr2.3:70051857-70051876 None:intergenic 30.0%
TATGGAAAAGAAGAGAAAGT+GGG - chr2.3:70052853-70052872 MS.gene047383:CDS 30.0%
TTCTTCTTCTTTGTGGAAAT+AGG - chr2.3:70051542-70051561 MS.gene047383:CDS 30.0%
! GTGATGCTAATGTTTTCTAT+TGG - chr2.3:70051720-70051739 MS.gene047383:intron 30.0%
! TTGGCAGGTATTAATTCTTT+TGG + chr2.3:70051926-70051945 None:intergenic 30.0%
! TTTGAGGCTGAAAATATGTT+TGG + chr2.3:70052021-70052040 None:intergenic 30.0%
!! AACTTTTTCTGTAACTGCAT+AGG + chr2.3:70052482-70052501 None:intergenic 30.0%
!! ACTTTTGGTAGCTATAGTTA+AGG - chr2.3:70052977-70052996 MS.gene047383:CDS 30.0%
!! GCTGAAAATATGTTTGGTTT+TGG + chr2.3:70052015-70052034 None:intergenic 30.0%
!!! ATTTTGTTTTGCAGATGTAG+GGG - chr2.3:70053327-70053346 MS.gene047383:CDS 30.0%
AGATAATTACCTGAGGAGTA+AGG + chr2.3:70051400-70051419 None:intergenic 35.0%
AGTGGTGTTTATCAATGATG+TGG - chr2.3:70053076-70053095 MS.gene047383:intron 35.0%
ATAATTACCTGAGGAGTAAG+GGG + chr2.3:70051398-70051417 None:intergenic 35.0%
ATCTTCCTTATCTCTTCTCT+TGG + chr2.3:70051668-70051687 None:intergenic 35.0%
ATGTTCTTAGGTTCTATAGG+CGG + chr2.3:70052804-70052823 None:intergenic 35.0%
ATTGATGTTAGGGAAACCAA+GGG + chr2.3:70051957-70051976 None:intergenic 35.0%
CCTAACAATGTTACATCACA+AGG - chr2.3:70052136-70052155 MS.gene047383:intron 35.0%
CCTTGTGATGTAACATTGTT+AGG + chr2.3:70052139-70052158 None:intergenic 35.0%
CTCAAAGAAAGATCAAGAAC+AGG - chr2.3:70052285-70052304 MS.gene047383:CDS 35.0%
CTGTTCTTGATCTTTCTTTG+AGG + chr2.3:70052287-70052306 None:intergenic 35.0%
CTTGAAGCTATCTTCAATTC+TGG - chr2.3:70051629-70051648 MS.gene047383:intron 35.0%
GAAACCAAGGGAAAATACTT+TGG + chr2.3:70051945-70051964 None:intergenic 35.0%
GAAATGATTGAGTGTATCTC+AGG - chr2.3:70053023-70053042 MS.gene047383:CDS 35.0%
GATAATTACCTGAGGAGTAA+GGG + chr2.3:70051399-70051418 None:intergenic 35.0%
GCACAACATCATTGATGTTA+GGG + chr2.3:70051967-70051986 None:intergenic 35.0%
GTAGGATGTAAAACAGTAGT+AGG + chr2.3:70052379-70052398 None:intergenic 35.0%
GTATGGAAAAGAAGAGAAAG+TGG - chr2.3:70052852-70052871 MS.gene047383:CDS 35.0%
TAAAACAGTAGTAGGAGTTG+TGG + chr2.3:70052371-70052390 None:intergenic 35.0%
TGAAGATAGCTTCAAGTATG+CGG + chr2.3:70051625-70051644 None:intergenic 35.0%
! AGAAGGGTAGTTACATTTTG+AGG + chr2.3:70052037-70052056 None:intergenic 35.0%
! AGCTATCTTCAATTCTGGAA+TGG - chr2.3:70051634-70051653 MS.gene047383:intron 35.0%
! CTTTTCTGAACTTTCCAACA+TGG - chr2.3:70052165-70052184 MS.gene047383:intron 35.0%
! GCAGGTATTAATTCTTTTGG+TGG + chr2.3:70051923-70051942 None:intergenic 35.0%
! GTTAGTGTACCATGGTTTTT+GGG - chr2.3:70052903-70052922 MS.gene047383:CDS 35.0%
! TATGCTTGCTTCTTGATTTG+CGG + chr2.3:70051754-70051773 None:intergenic 35.0%
! TCTTTGAGGAATTAACACCA+TGG + chr2.3:70052273-70052292 None:intergenic 35.0%
!! GGCTCTATTGGCTTAAATAT+AGG - chr2.3:70052938-70052957 MS.gene047383:CDS 35.0%
!!! AGTGAATTAGGGTTTTGTTG+TGG + chr2.3:70051845-70051864 None:intergenic 35.0%
!!! TCTGATTCTTGTTCTGGTTT+TGG + chr2.3:70051790-70051809 None:intergenic 35.0%
AAACAGATGTTCAGATGTGG+GGG + chr2.3:70052340-70052359 None:intergenic 40.0%
AAGAAGAAAGTCTCAGTAGC+TGG + chr2.3:70052082-70052101 None:intergenic 40.0%
AATGCCGCACGAACATTAAA+AGG + chr2.3:70053122-70053141 None:intergenic 40.0%
ACAGAAGCAGTTGGAGAATT+AGG + chr2.3:70051989-70052008 None:intergenic 40.0%
AGATGTAGGGGAAAAAATGC+TGG - chr2.3:70053339-70053358 MS.gene047383:CDS 40.0%
AGTGAGATCATGAACAACCA+TGG - chr2.3:70052253-70052272 MS.gene047383:CDS 40.0%
ATCCACCAAGAGAAGAGATA+AGG - chr2.3:70051660-70051679 MS.gene047383:intron 40.0%
ATTGAGTGTATCTCAGGCAT+TGG - chr2.3:70053029-70053048 MS.gene047383:CDS 40.0%
CAAACAGATGTTCAGATGTG+GGG + chr2.3:70052341-70052360 None:intergenic 40.0%
CATTGATGTTAGGGAAACCA+AGG + chr2.3:70051958-70051977 None:intergenic 40.0%
CCAGAATCAGAATCAGAATC+AGG - chr2.3:70051811-70051830 MS.gene047383:intron 40.0%
CCTATCATTTCTCAAGTGCA+AGG - chr2.3:70052427-70052446 MS.gene047383:CDS 40.0%
CCTGATTCTGATTCTGATTC+TGG + chr2.3:70051814-70051833 None:intergenic 40.0%
CCTGTGTTAACAAACCAGTA+TGG - chr2.3:70053179-70053198 MS.gene047383:intron 40.0%
CCTTGCACTTGAGAAATGAT+AGG + chr2.3:70052430-70052449 None:intergenic 40.0%
GAAAATAACATGCACCATGC+TGG + chr2.3:70053223-70053242 None:intergenic 40.0%
GAGGAAGATGAAGAAGATGA+AGG + chr2.3:70051890-70051909 None:intergenic 40.0%
GATAGGTGATTGAACAGTGA+TGG + chr2.3:70052413-70052432 None:intergenic 40.0%
GCAAACAGATGTTCAGATGT+GGG + chr2.3:70052342-70052361 None:intergenic 40.0%
GCTGTTCTTGTACATCAAAC+TGG - chr2.3:70053152-70053171 MS.gene047383:intron 40.0%
GGCACAACATCATTGATGTT+AGG + chr2.3:70051968-70051987 None:intergenic 40.0%
GGCTTAGACTTAAACATGCT+TGG + chr2.3:70051307-70051326 None:intergenic 40.0%
GGTACAGTAGCAGAAATTTG+AGG + chr2.3:70051869-70051888 None:intergenic 40.0%
TAGTGCAGTTACCAGTGTTA+TGG + chr2.3:70052219-70052238 None:intergenic 40.0%
TATCAATGATGTGGCCTTTG+AGG - chr2.3:70053085-70053104 MS.gene047383:intron 40.0%
TGGCTTCATCAAATAGACAC+TGG - chr2.3:70051281-70051300 MS.gene047383:CDS 40.0%
TGTTCATGATCTCACTAAGC+AGG + chr2.3:70052249-70052268 None:intergenic 40.0%
TTAATGTTCGTGCGGCATTT+GGG - chr2.3:70053123-70053142 MS.gene047383:intron 40.0%
TTCCTTATCTCTTCTCTTGG+TGG + chr2.3:70051665-70051684 None:intergenic 40.0%
TTTAATGTTCGTGCGGCATT+TGG - chr2.3:70053122-70053141 MS.gene047383:intron 40.0%
! GGTTAGTGTACCATGGTTTT+TGG - chr2.3:70052902-70052921 MS.gene047383:CDS 40.0%
! TCAAGTATGCGGATTTGTTC+TGG + chr2.3:70051614-70051633 None:intergenic 40.0%
! TGGACCTTTTAATGTTCGTG+CGG - chr2.3:70053115-70053134 MS.gene047383:intron 40.0%
! TTGCAAGAGTATGGTCAAGT+TGG - chr2.3:70051698-70051717 MS.gene047383:intron 40.0%
! TTTTGGTGGAGATTTCTCAG+AGG + chr2.3:70051909-70051928 None:intergenic 40.0%
!! CCATACTGGTTTGTTAACAC+AGG + chr2.3:70053182-70053201 None:intergenic 40.0%
!! TCTGGTTCTGATTCTTGTTC+TGG + chr2.3:70051796-70051815 None:intergenic 40.0%
!!! ATGCGGATTTGTTCTGGTTT+TGG + chr2.3:70051608-70051627 None:intergenic 40.0%
!!! TCTTGTTCTGGTTTTGGAGA+TGG + chr2.3:70051784-70051803 None:intergenic 40.0%
!!! TGCTTCTTGATTTGCGGTTT+TGG + chr2.3:70051748-70051767 None:intergenic 40.0%
!!! TTTTGGTTCACAGAAGCAGT+TGG + chr2.3:70051998-70052017 None:intergenic 40.0%
AACAGATGTTCAGATGTGGG+GGG + chr2.3:70052339-70052358 None:intergenic 45.0%
AACAGTAGTAGGAGTTGTGG+CGG + chr2.3:70052368-70052387 None:intergenic 45.0%
AAGACGTGGTTAGTGTACCA+TGG - chr2.3:70052895-70052914 MS.gene047383:CDS 45.0%
AGAGCACAGTTGCAAGAGTA+TGG - chr2.3:70051689-70051708 MS.gene047383:intron 45.0%
AGGTGATTGAACAGTGATGG+TGG + chr2.3:70052410-70052429 None:intergenic 45.0%
AGTGAAGAGTGACACCATAC+TGG + chr2.3:70053196-70053215 None:intergenic 45.0%
CCAAGGGAAAATACTTTGGC+AGG + chr2.3:70051941-70051960 None:intergenic 45.0%
CTTGTCCATGATGTTGCACT+GGG + chr2.3:70052105-70052124 None:intergenic 45.0%
GGCAAACAGATGTTCAGATG+TGG + chr2.3:70052343-70052362 None:intergenic 45.0%
TAATGTTCGTGCGGCATTTG+GGG - chr2.3:70053124-70053143 MS.gene047383:intron 45.0%
TTCTTCCCAGTGCAACATCA+TGG - chr2.3:70052097-70052116 MS.gene047383:intron 45.0%
TTTGGATTCCACCTTGGCTT+TGG + chr2.3:70051590-70051609 None:intergenic 45.0%
! AGTTGATGTCATGCTGCCAT+TGG + chr2.3:70051345-70051364 None:intergenic 45.0%
!! ACTGATTTTGCAGCAACACC+TGG + chr2.3:70053059-70053078 None:intergenic 45.0%
!! AGGTGTTGCTGCAAAATCAG+TGG - chr2.3:70053058-70053077 MS.gene047383:CDS 45.0%
!! CATTGGTGATGAGTGTTGCA+GGG + chr2.3:70051328-70051347 None:intergenic 45.0%
!! CCTGCCAAAGTATTTTCCCT+TGG - chr2.3:70051938-70051957 MS.gene047383:intron 45.0%
!! TACTTGTGGTGGTGGAAGAA+GGG + chr2.3:70052053-70052072 None:intergenic 45.0%
!! TGATTGAACAGTGATGGTGG+AGG + chr2.3:70052407-70052426 None:intergenic 45.0%
!! TTACTTGTGGTGGTGGAAGA+AGG + chr2.3:70052054-70052073 None:intergenic 45.0%
!! TTATGGTGTTGCTGACCATG+TGG + chr2.3:70052202-70052221 None:intergenic 45.0%
!!! TCTGGTTTTGGATTCCACCT+TGG + chr2.3:70051596-70051615 None:intergenic 45.0%
!!! TATTTTTTTATTTTTCTTTT+AGG - chr2.3:70052738-70052757 MS.gene047383:CDS 5.0%
ACAGTAGTAGGAGTTGTGGC+GGG + chr2.3:70052367-70052386 None:intergenic 50.0%
ACTCTTCACTCACTCCAGCA+TGG - chr2.3:70053206-70053225 MS.gene047383:intron 50.0%
AGGTCCAGAAGCAACCTCAA+AGG + chr2.3:70053102-70053121 None:intergenic 50.0%
ATGGTTCCTGCTCAACCACA+TGG - chr2.3:70052184-70052203 MS.gene047383:intron 50.0%
CACACGTGACCCAAAAACCA+TGG + chr2.3:70052915-70052934 None:intergenic 50.0%
CCAGTGCAACATCATGGACA+AGG - chr2.3:70052103-70052122 MS.gene047383:intron 50.0%
CCTGCAACACTCATCACCAA+TGG - chr2.3:70051326-70051345 MS.gene047383:intron 50.0%
CCTTGTCCATGATGTTGCAC+TGG + chr2.3:70052106-70052125 None:intergenic 50.0%
GGTCAGCAACACCATAACAC+TGG - chr2.3:70052205-70052224 MS.gene047383:CDS 50.0%
GTAGCTGGTGCAGTTACTTG+TGG + chr2.3:70052067-70052086 None:intergenic 50.0%
TGGTTGAGCAGGAACCATGT+TGG + chr2.3:70052182-70052201 None:intergenic 50.0%
TGTTCAGATGTGGGGGGATT+TGG + chr2.3:70052333-70052352 None:intergenic 50.0%
! TCACGTGTGCATGGCTCTAT+TGG - chr2.3:70052926-70052945 MS.gene047383:CDS 50.0%
!! ATCTCAGGCATTGGTGAACC+AGG - chr2.3:70053038-70053057 MS.gene047383:CDS 50.0%
!! CCATTGGTGATGAGTGTTGC+AGG + chr2.3:70051329-70051348 None:intergenic 50.0%
!! GTGATGGTGGAGGAAGTAGT+AGG + chr2.3:70052397-70052416 None:intergenic 50.0%
!!! GTTTTTGGGTCACGTGTGCA+TGG - chr2.3:70052917-70052936 MS.gene047383:CDS 50.0%
CACAGAACCCCTTACTCCTC+AGG - chr2.3:70051388-70051407 MS.gene047383:intron 55.0%
GAAGTCCTGAGCCAAAGCCA+AGG - chr2.3:70051576-70051595 MS.gene047383:CDS 55.0%
GCTGGTGCAGTTACTTGTGG+TGG + chr2.3:70052064-70052083 None:intergenic 55.0%
GGTGCAGTTACTTGTGGTGG+TGG + chr2.3:70052061-70052080 None:intergenic 55.0%
TGCTGACCATGTGGTTGAGC+AGG + chr2.3:70052193-70052212 None:intergenic 55.0%
!! GTGGCCTTTGAGGTTGCTTC+TGG - chr2.3:70053095-70053114 MS.gene047383:intron 55.0%
!! TTCCACCTTGGCTTTGGCTC+AGG + chr2.3:70051584-70051603 None:intergenic 55.0%
GTCCTGAGCCAAAGCCAAGG+TGG - chr2.3:70051579-70051598 MS.gene047383:CDS 60.0%
! GTAGTAGGAGTTGTGGCGGG+TGG + chr2.3:70052364-70052383 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 70051280 70053368 70051280 ID=MS.gene047383
chr2.3 mRNA 70051280 70053368 70051280 ID=MS.gene047383.t1;Parent=MS.gene047383
chr2.3 exon 70053239 70053368 70053239 ID=MS.gene047383.t1.exon1;Parent=MS.gene047383.t1
chr2.3 CDS 70053239 70053368 70053239 ID=cds.MS.gene047383.t1;Parent=MS.gene047383.t1
chr2.3 exon 70052200 70053084 70052200 ID=MS.gene047383.t1.exon2;Parent=MS.gene047383.t1
chr2.3 CDS 70052200 70053084 70052200 ID=cds.MS.gene047383.t1;Parent=MS.gene047383.t1
chr2.3 exon 70051396 70051603 70051396 ID=MS.gene047383.t1.exon3;Parent=MS.gene047383.t1
chr2.3 CDS 70051396 70051603 70051396 ID=cds.MS.gene047383.t1;Parent=MS.gene047383.t1
chr2.3 exon 70051280 70051307 70051280 ID=MS.gene047383.t1.exon4;Parent=MS.gene047383.t1
chr2.3 CDS 70051280 70051307 70051280 ID=cds.MS.gene047383.t1;Parent=MS.gene047383.t1
Gene Sequence

>MS.gene047383

ATGGCTTCATCAAATAGACACTGGCCAAGCATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTGCTTGTCACAGAACCCCTTACTCCTCAGGTAATTATCTACATTTTCAATCTAACTATACTAATATTTGACTATAGAAAAACACTGATTCAACTTTTGTACGTAAAATATAGTTAGAGACCCTAATGTCTAATTTGTAACAAGTTATTATAGACATTTTTTTTCTTCTTCTTTGTGGAAATAGGTTGTGAAGAGAGAAGTCCTGAGCCAAAGCCAAGGTGGAATCCAAAACCAGAACAAATCCGCATACTTGAAGCTATCTTCAATTCTGGAATGGTGAATCCACCAAGAGAAGAGATAAGGAAGATTAGAGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTTTTCTATTGGTTCCAAAACCGCAAATCAAGAAGCAAGCATAAGCTTCGCCATCTCCAAAACCAGAACAAGAATCAGAACCAGAATCAGAATCAGAATCAGGATCAATCACCACAACAAAACCCTAATTCACTTCCTCAAATTTCTGCTACTGTACCTTCATCTTCTTCATCTTCCTCTGAGAAATCTCCACCAAAAGAATTAATACCTGCCAAAGTATTTTCCCTTGGTTTCCCTAACATCAATGATGTTGTGCCTAATTCTCCAACTGCTTCTGTGAACCAAAACCAAACATATTTTCAGCCTCAAAATGTAACTACCCTTCTTCCACCACCACAAGTAACTGCACCAGCTACTGAGACTTTCTTCTTCCCAGTGCAACATCATGGACAAGGAATAGTACTTCCTAACAATGTTACATCACAAGGGTTTTGCTTTTCTGAACTTTCCAACATGGTTCCTGCTCAACCACATGGTCAGCAACACCATAACACTGGTAACTGCACTACTAGTTTCCTGCTTAGTGAGATCATGAACAACCATGGTGTTAATTCCTCAAAGAAAGATCAAGAACAGGATAAGTCTGTGAAAATAATGCACCAAATCCCCCCACATCTGAACATCTGTTTGCCACCCGCCACAACTCCTACTACTGTTTTACATCCTACTACTTCCTCCACCATCACTGTTCAATCACCTATCATTTCTCAAGTGCAAGGTAATTAATTACATATATAGCATTTATTTACCTATGCAGTTACAGAAAAAGTTGAAATAATGATATATAGACAAAAATAAAATAAAATTTGACCCCAAATTATTTAGTTTCTTTAACACTACAATTCCACATATTTTCATCTCTAAATTTTTGTTGCTATTTTAACATGTATAGTATTCAAAACTTCTATTCTGCATAGTAATTTTTATTGTTTATATATTTTAAGAAAAGTTTTTATATTAACACATCTTGTAAGTGCAAGAGCAAAACCACAAGATCTTGACTAGTTTATTTTTTTATTTTTCTTTTAGGTTACTCCTATTATTTCATCTATATACTTGTTAATTTTACACCGCCTATAGAACCTAAGAACATAGTTTTTGAGATAAAAATGGTAATGTATGTATGGAAAAGAAGAGAAAGTGGGTAATAAGATTAATGTGAATAAGACGTGGTTAGTGTACCATGGTTTTTGGGTCACGTGTGCATGGCTCTATTGGCTTAAATATAGGCTTTAGTATTAGTTTGACTTTTGGTAGCTATAGTTAAGGTTTGTATTTAGACTTGCACATGAGAAATGATTGAGTGTATCTCAGGCATTGGTGAACCAGGTGTTGCTGCAAAATCAGTGGTGTTTATCAATGATGTGGCCTTTGAGGTTGCTTCTGGACCTTTTAATGTTCGTGCGGCATTTGGGGATGATGCTGTTCTTGTACATCAAACTGGTCAGCCTGTGTTAACAAACCAGTATGGTGTCACTCTTCACTCACTCCAGCATGGTGCATGTTATTTTCTTGTAAGCACGTAAACATACATTATTTTATATACTTGTTTAGTTAATCTTATCAAATTAACCTTCTCTAATTTATTTTTCATATATTTTGTTTTGCAGATGTAGGGGAAAAAATGCTGGAGAGTGA
Protein sequence

>MS.gene047383.t1

MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNKNQNQNQNQNQDQSPQQNPNSLPQISATVPSSSSSSSEKSPPKELIPAKVFSLGFPNINDVVPNSPTASVNQNQTYFQPQNVTTLLPPPQVTAPATETFFFPVQHHGQGIVLPNNVTSQGFCFSELSNMVPAQPHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQEQDKSVKIMHQIPPHLNICLPPATTPTTVLHPTTSSTITVQSPIISQVQGIGEPGVAAKSVVFINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGACYFLVSTCRGKNAGE