AlfalfaGEDB | MS.gene047479

M. sativa cultivar XinJiangDaYe / MS.gene047479

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03789.16 PF03790.16 PF03791.16 PF05920.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047479.t1	AAG27464.1	99.2	257	2	0	159	415	125	381	2.90E-143	518.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047479.t1	P46608	87.6	259	26	5	159	415	125	379	5.8e-124	445.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047479.t1	A5Y4G6	99.2	257	2	0	159	415	118	374	2.1e-143	518.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene047479.t1	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047479.t1	MTR_2g024390	97.333	375	5	3	41	415	5	374	0.0	756
MS.gene047479.t1	MTR_5g085860	60.854	281	95	4	140	415	28	298	2.94e-103	308
MS.gene047479.t1	MTR_1g017080	58.039	255	93	3	155	399	116	366	9.74e-90	276
MS.gene047479.t1	MTR_5g033720	54.812	239	106	1	154	390	68	306	1.52e-82	256
MS.gene047479.t1	MTR_1g084060	49.402	251	107	5	153	390	14	257	6.49e-67	214
MS.gene047479.t1	MTR_1g084060	49.402	251	107	5	153	390	14	257	1.70e-66	214
MS.gene047479.t1	MTR_1g012960	31.890	254	132	6	159	378	174	420	1.44e-36	139
MS.gene047479.t1	MTR_2g461240	30.739	257	149	6	149	378	85	339	1.01e-35	135
MS.gene047479.t1	MTR_4g116545	30.108	279	168	6	126	378	38	315	8.95e-35	132
MS.gene047479.t1	MTR_4g116545	30.108	279	168	6	126	378	38	315	9.23e-35	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047479.t1	AT1G62360	79.087	263	49	5	158	415	121	382	1.80e-132	386
MS.gene047479.t1	AT4G08150	51.090	321	127	9	102	399	72	385	7.17e-90	278
MS.gene047479.t1	AT1G23380	49.609	256	109	3	154	399	81	326	2.67e-80	251
MS.gene047479.t1	AT1G70510	50.410	244	121	0	154	397	65	308	5.39e-80	249
MS.gene047479.t1	AT1G23380	49.225	258	109	4	154	399	81	328	2.48e-78	246
MS.gene047479.t1	AT1G70510	49.597	248	121	1	154	397	65	312	1.08e-77	243
MS.gene047479.t1	AT4G32040	27.424	361	221	6	57	378	4	362	4.96e-42	152
MS.gene047479.t1	AT4G32040	27.424	361	221	6	57	378	4	362	5.55e-42	152
MS.gene047479.t1	AT5G25220	30.970	268	154	6	141	378	137	403	7.71e-40	147
MS.gene047479.t1	AT5G25220	30.970	268	154	6	141	378	137	403	9.76e-40	147

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Find 85 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATAGCTTCCTTTAA+GGG	0.321776	2.4:-63201112	None:intergenic
AAAAGGAAAGCTTCCAAAAG+AGG	0.530019	2.4:+63204618	MS.gene047479:CDS
AAAGGCATCATCATCATTGG+AGG	0.581233	2.4:-63200314	None:intergenic
AACCTTGCCACCACTTCACT+TGG	0.434594	2.4:-63200950	None:intergenic
AAGAAGAAGAAGAGCTTCCA+TGG	0.445455	2.4:-63200562	None:intergenic
AAGTCATCCACACTATTACA+TGG	0.581325	2.4:+63205616	MS.gene047479:CDS
AATAACCATCAAAACACTCC+TGG	0.547863	2.4:+63200506	MS.gene047479:CDS
AATTCCCTGTCTTCTGCTTG+AGG	0.446914	2.4:-63204523	None:intergenic
AATTGTTGCCTTGCCTCTTT+TGG	0.282916	2.4:-63204631	None:intergenic
ACAAACTGCATGTCCTCTGA+AGG	0.595663	2.4:-63205581	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAATCTGACCTAGA+AGG	+	chr2.4:63200155-63200174	MS.gene047479:intron	30.0%
AACCTTATCACATAATGCAT+TGG	+	chr2.4:63202608-63202627	MS.gene047479:intron	30.0%
AATGTGGAGTGAAATCAAAA+TGG	-	chr2.4:63203958-63203977	None:intergenic	30.0%
ACATTATCCATGTAATAGTG+TGG	-	chr2.4:63205626-63205645	None:intergenic	30.0%
ACTAATGCAAACAACATAAG+CGG	+	chr2.4:63200395-63200414	MS.gene047479:CDS	30.0%
AGAAAATACAGTGGATACTT+AGG	+	chr2.4:63204562-63204581	MS.gene047479:CDS	30.0%
AGACAAAAATGCATGAGTTA+AGG	-	chr2.4:63201544-63201563	None:intergenic	30.0%
AGCAAGAGTTTATGAAGAAA+AGG	+	chr2.4:63204593-63204612	MS.gene047479:CDS	30.0%
AGCTAGTTGAAATAGTATCA+TGG	+	chr2.4:63203609-63203628	MS.gene047479:intron	30.0%
AGTGAGTATTAATTCAATGG+AGG	+	chr2.4:63200220-63200239	MS.gene047479:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	63199623	63205691	63199623	ID=MS.gene047479
chr2.4	mRNA	63199623	63205691	63199623	ID=MS.gene047479.t1;Parent=MS.gene047479
chr2.4	exon	63199623	63199679	63199623	ID=MS.gene047479.t1.exon1;Parent=MS.gene047479.t1
chr2.4	CDS	63199623	63199679	63199623	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1
chr2.4	exon	63199923	63199984	63199923	ID=MS.gene047479.t1.exon2;Parent=MS.gene047479.t1
chr2.4	CDS	63199923	63199984	63199923	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1
chr2.4	exon	63200247	63200667	63200247	ID=MS.gene047479.t1.exon3;Parent=MS.gene047479.t1
chr2.4	CDS	63200247	63200667	63200247	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1
chr2.4	exon	63200941	63201196	63200941	ID=MS.gene047479.t1.exon4;Parent=MS.gene047479.t1
chr2.4	CDS	63200941	63201196	63200941	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1
chr2.4	exon	63204449	63204696	63204449	ID=MS.gene047479.t1.exon5;Parent=MS.gene047479.t1
chr2.4	CDS	63204449	63204696	63204449	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1
chr2.4	exon	63205488	63205691	63205488	ID=MS.gene047479.t1.exon6;Parent=MS.gene047479.t1
chr2.4	CDS	63205488	63205691	63205488	ID=cds.MS.gene047479.t1;Parent=MS.gene047479.t1

Gene Sequence

>MS.gene047479

ATGGCAGGGGTATCAGTGGCAGTGCAGAAAAAGGAAGGTAGAGTTTTCATTGGGAAGGTAAAACCTTTTTTTGGCACCAATGCTTCACACTAACCCTTCTTCTGTAACTCAACCTTCATCTCTCTCTCTTCATACCCCGCGTGCACTCTACTGCTTCTCACTCCTTCATAAAAAACCTTGTATTATCCACTAGCTAGAGAGACAAAGAGAGATTCATTTCATTACTATTAGTATTCATTAAATGCTGAAAATGTGTGGAAAGAGAGATTAACACTCATTTTCCAAAGGAAATCTGTGCAGGCTTTTGCCAGTAGTAGAAGAAGCCAAAAAACCTCTTCACTACTTCTTCATGTAACTGACTGGTAACTATACAACATAGCCACCACAAAACACTATCACTATTTATGTTTTTCTGTAAAAAAGCCTGTTACTTTTTTACCATAAAACCCGGGCGGGTGACCCTTGTGTGAAACAAAAACAAAACATCTTCAATATTAATATCATTCTCAGTGAGAGAAAGAGAGAGAAAGAAAAAGAAAAATCTGACCTAGAAGGCAAAAAGGTTAATAAAAAGGAAGTGTTACTTGTGGCTAAGTGAGTGAGTATTAATTCAATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATACTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTCAGAAAAAAAAAGATAATTATTTTGAAAACGATGTGTGTAATTAATTTCTTTGTACTTTTTTTGTTTGACAAGTTTGGATCTGACGAGCTGTGTTGTATAATTGTACTTTGAAACTGTGGGCTTTTGTTTTCATTTCCATTTATTACTAATATTGACAAACTATCATGTATATTATTGTAAGTCAAAACCCTTTTAAGCATAGATGATAAAGACACTTCATTTCATGACTATTTTTTTCATAAATTTTTTACTTCATGGAAATTATTTTAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGGTGATAATAATCTCTCTCTCTCTCTCTCCAGAAAATACTATTCAGATTTTAAATCATAATCTTGATTGCTTGCTTGATATTTGTTGTTTACATATGTATCCATGCATGTCTGTGTTTGGAAGAGTTTGTTAATTTTGTTAGTATGTACAGTGTTTGATTATTAATTAATTAAATTAAATTAAATTGTAGTTAATGACAAGATCTACTTTTTCTTTGCAGCTTTTCATAAAAAAATTCTTAATTAGTCTTTCTCATTGATTTTTCATTTTATATTTCTAGCTTGTACTCTTTTTAATCTTCTTTGCCTAAATAAGTGAGTTCCAAATACTTGAAACCAAAGGTGCCCTTAACTCATGCATTTTTGTCTGAAAATAAAGGTAGATGGTGATGTTTAGTAGTACATATATATTTCATTGGTGTTGGTGCATTGAAGGAACTTAACTATATAGGTATCTTGTTAAATTCGTCGTTTCTTGTGTGTGTGTGTGCGCTTGATAGTATTGTTTTTATGGGAACTATAAGACTTGCATCATCACATATATAGCTTTTTCTTAAAATTTCCCTTTTGATGAGGTCACAGAAACTCTCAGATTTCACTGGCTTTTGTAGTGTTCTTAATATATTAACATTATTAAAGAATCTACTTTGTAATGAATCCAAAATTTGGAGGACTTCGGAACAGGAAGATTGGTGGGTGAATTTAGGTTTTGTAAATAATAACCAATGAATTAGGGTTTCTTCTGCACTTGTTCCCAGAAGTGGTAATTGCGAGGTATATACTCACAAGTTTCTTTCTAAATTGGAATGCAAAATGCAGATAGTAGAGTAGCTCCAAAGAGGTAAAGTACTTTCCTGGGGACAAGTGCATAGTGGATTTTAGATTATGATATGGATCAATTAACATGAAAAAAATCTTGCAAAGTTGATTGGATTTGATTAATGACCTAAAAAAGAGATTAAGCTATGATGTGTTAGTAGGTCCTTAAGAATAATGGTGAGTTTAATTGATTTGTTCTCTTGCTTCTTTTTCTCATTTGTCTCATCAAGGTTCCGTGTAAACACTACTCCCTATGGATGGAATATTTTATTAATTTGTATAATTTCATATAGATAGTGTGATTATATGTGTTGTCATCATTATGTATATTTTTGTGTCTGCAGGTATAGATGCATATTATAATGCTTGTAAAATTATGTTTGTGTGTTGATATTATTATATATATTTGATAAAAAACTTGTTTGCTTGTTTTTAACTAAAAATGGATATACATTGTCCTACATGCATTTTTCTATGATGTTCATTGTTGGTGCTTATCAAAAAACTGTGGCATCTATGTTGAATGAAGACTACAATTGAATTTGAGTCAAACTTTGCTGCTATAGAGTTAATGACTATGATGAAAATAAGCAGAACCTTATCACATAATGCATTGGATATAAACATGACCAAGCTTTTAGTGGATCATTGATTTCTAGCTTCCAACTATGTATGGGCCAAAAGAAGTATATAGTAGTAACTTTCCACATATTGATCCAAAGTTTTCAATTCAATGTTTCTTATCTTTATGTTCATGTTCCCCTCTATTTTTGTAGTATATCATCGTATGCTGGTTTTTCAATTATTGAAGTCTCCTTTTAGTAATGTACTGTCTTACCCTTCAAAACATAAAAAAACTTGAACTTCCACTTATCAATTATACATGTTTTTGTTTATGCTTTTGATGTGTTAATTTTGTTAAACTCTCCTATATAGAAAGATTATCTTAGGTTTTGGTTCTAACTAAATCCAAGTTTGTAAGGTTTTCGGGTGTCCATTTTATAAAGAAAATCGATCGATCTTCGACTTGAGTTTTTTCCATTTAGTTAAGCTATGCATTTTTCTTCGGCTTTGGCATCTGAAGATTACACTGTGTTAATTCTAATAATTAATAACAATGGCCTTTGATTATGTTTGAAGTAATATAATATATTGTACCATTTTTATCCCTATGATAATAGATTTCCACTGGTTTTGATTTCTGCATCTAGGCTTGACTAGGGTCTCTTGTGTGTATGGATTATGTTGCCCTTCATAAGTTAAGTATTTTGGTGAAGTATACATTCACGAGGAATATACTTTATCATCTTTAACTTTGTCTTCTTTGAAGGAAAAGGAGTGTCCATTATTTCAGGGTTTAGATGCATGGAGCCTTGGAAATAATGGATGTGTAGATTATGTGCCTTCCCGGCTCTTTATCCTATGCACCTAGTTCAAATGTTAACCTTCAATGTGGTGAATCAATGATTTTCAATGATTGAAGATTGTACTTTTATCCTTTAATTAAACATTCACCCTTGTGGTATCAAAATTTGTCCTAACCAATAATTTAGTAGCTTAGCTTGGCATTTAAATCCAACATATATGCTAGTTTCAGCTAGTTGAAATAGTATCATGGTTTAAAAAGTTAAGCTACTATGTTTGTTAACCTTATTGGTTTACTTTTATGTAAACAGCAAAGAAGAGTTCCAATTAAAAATAGGAGTACAAGGGGTACTCATCCATATACAACCAAGGGCAAGCTAATTACAAGGGGTACCCCCCACATATATTTGATTATAGGACCTAAGGATGCAATTCATATGACCTAAACACCACTCAAAGAAAAGGCTATTGCCTCCATGAAATACCTTCCAAGTAACTGAATGCAAAATTAGTGACAATCCCTCTCTTTTCCTTGCGCCCCCATATATACAAATATCCATGGTCCAAAAATCCTAACCATTTTGATTTCACTCCACATTGTTAATATTTTAACCTTTTTATATATATATATATATATATATATATATATATATATATATATTTTCTTCCAATGTTAGATTTCTATATTTATTTTAATGTTCTGTTTACGAGGATTGGTTTTGCCAACTTGCCTTCTATTCATGTGTAAGTAATATTGATAGTAAATAAGAAGTCAAACAATAAAAAAAATTGTTACTGTTGTTTTAAAAAAAAAATGATGACTATAAATTGTTTTTACCGGTAGCAATTATTGTTGTTGAGTAAAAGCTCAAGTGTCACATTGCTTAGAAATGTCATAACATAGAACTTGGAATCAACTTTTTGCAAATCGGATTGAAGAGTAGGTCTTGGGATATACACAATACTATGTATTTTGAATACAACCTTTTATTTTCATATATTCAAAATATCCTTCTAATGTTATATTATTTGCAATCATCATAATTGATTTGATTCATATATATGATCAGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGTAAGCACCACTTTAAAAATTTGAATCTTTTTTCTTAATCTCTTGCCACAATATTTCTAATTAAATTTTGATTTCTTTCATTTCATAGGCAATCACCTAGTTACGGATTTTAATAAATTAATCAAAGATAATGACAACTCATGTTTCGACTTGGTGCATGTTTGGATTCACGAGTGATTTGCTAAAATTGTGTGGAGACCGTGATTTTTTTGTAGCTCCAATGTGTAGCTTTTGCAATAAGTCATGATCAACCAAGTCCACCATGATTTTTCAAATTTGCAAAGTCACGTTGAACCACCATGGTTTTTCAAGTCACGCTAAGCCGAACATGCATTTAGTATTTGAAGACTGATTTTTTAAGGTCAAAATGTGAGTTGTTTGCATTAATTTGAAGGTTTCGCATGACTATATTCTATATCAAATGTGTAAATTGGATTTGGGTTGTTGAGCAGTCACAATACCGTGCAGTCACACCACACCAAAGGTCATTGGATCAAAATCAGACGATTGGATTTAAAGTTTAGTGTGTTAGATTTTTTTTTTAATCAAAATCTGCATTGATATTTGGACCTTTCGATCTTGATCCAACGGTCAATAATGTGATCAACTGTGTGACTTGACGATTTTGTGATTTCACACGCAATCCAAAACCCTAACCATATAAACATGTATTGTACAATTTACTTTTTTTGAAGGTAAGAATTTTACTTTATAATAACTAGCATGAAGACAAATTGATAATAAGTTGTCTCACACAATTCAAATGTACTACTATAATTTATGAATAACAGGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG

Protein sequence

>MS.gene047479.t1

MAGVSVAVQKKEGRVFIGKAFASSRRSQKTSSLLLHVTDCSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNTNANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML