AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047481.t1 MTR_2g024380 87.821 312 38 0 245 556 159 470 0.0 580
MS.gene047481.t1 MTR_2g024380 74.894 235 49 2 1 235 1 225 1.91e-90 286
MS.gene047481.t1 MTR_2g024350 87.665 227 28 0 330 556 1 227 2.91e-146 420
MS.gene047481.t1 MTR_6g053200 40.752 319 157 6 255 556 233 536 3.18e-68 229
MS.gene047481.t1 MTR_6g053200 50.000 96 42 1 1 90 1 96 4.37e-15 78.6
MS.gene047481.t1 MTR_7g104980 52.261 199 94 1 358 556 18 215 1.98e-55 186
MS.gene047481.t1 MTR_8g067635 36.193 373 161 7 171 469 135 504 3.15e-54 192
MS.gene047481.t1 MTR_8g067650 36.527 334 141 6 253 555 226 519 1.46e-53 190
MS.gene047481.t1 MTR_8g069935 42.289 201 85 2 256 426 220 419 2.85e-41 155
MS.gene047481.t1 MTR_1g099600 54.082 98 43 2 315 412 164 259 1.02e-29 119
MS.gene047481.t1 MTR_7g079040 35.676 185 102 5 305 478 122 300 6.45e-27 112
MS.gene047481.t1 MTR_8g028565 46.296 108 57 1 316 423 134 240 5.47e-26 109
MS.gene047481.t1 MTR_7g105000 33.921 227 92 4 179 357 124 340 2.04e-24 105
MS.gene047481.t1 MTR_7g105000 55.952 84 36 1 1 84 1 83 1.10e-12 70.1
MS.gene047481.t1 MTR_1g070455 66.667 63 21 0 334 396 290 352 2.47e-24 105
MS.gene047481.t1 MTR_2g032030 38.519 135 69 3 288 409 205 338 1.58e-23 103
MS.gene047481.t1 MTR_2g032030 38.519 135 69 3 288 409 205 338 3.04e-23 103
MS.gene047481.t1 MTR_4g127040 39.496 119 54 2 278 396 204 304 8.64e-23 99.8
MS.gene047481.t1 MTR_3g108960 46.154 91 48 1 313 402 289 379 1.32e-22 100
MS.gene047481.t1 MTR_4g094908 48.837 86 41 1 313 395 239 324 1.99e-22 99.0
MS.gene047481.t1 MTR_5g016610 57.576 66 28 0 330 395 192 257 3.31e-22 97.1
MS.gene047481.t1 MTR_2g033110 66.019 103 30 2 1 98 1 103 5.12e-22 94.7
MS.gene047481.t1 MTR_8g087000 61.290 62 24 0 336 397 76 137 6.13e-22 95.5
MS.gene047481.t1 MTR_8g098945 56.164 73 31 1 338 410 130 201 7.52e-22 95.9
MS.gene047481.t1 MTR_8g087000 61.290 62 24 0 336 397 75 136 8.81e-22 95.1
MS.gene047481.t1 MTR_7g109600 47.253 91 41 1 315 398 24 114 1.63e-21 94.7
MS.gene047481.t1 MTR_1g009613 44.248 113 55 2 286 394 211 319 2.33e-21 95.9
MS.gene047481.t1 MTR_2g016770 48.352 91 43 1 311 397 5 95 4.59e-21 92.4
MS.gene047481.t1 MTR_2g083870 61.290 62 24 0 336 397 79 140 5.43e-21 93.2
MS.gene047481.t1 MTR_2g016770 61.290 62 24 0 336 397 26 87 5.74e-21 91.7
MS.gene047481.t1 MTR_4g052030 69.492 59 6 1 337 395 5 51 9.81e-21 85.9
MS.gene047481.t1 MTR_0117s0040 57.812 64 27 0 331 394 68 131 2.39e-20 90.9
MS.gene047481.t1 MTR_2g045360 36.207 116 68 1 282 397 162 271 4.23e-18 87.4
MS.gene047481.t1 MTR_3g053330 51.667 60 29 0 338 397 252 311 1.93e-17 85.5
MS.gene047481.t1 MTR_1g086790 42.222 90 50 2 317 406 139 226 7.08e-17 82.4
MS.gene047481.t1 MTR_3g106060 52.542 59 28 0 337 395 138 196 2.74e-16 80.1
MS.gene047481.t1 MTR_7g100510 49.425 87 42 2 322 408 174 258 6.93e-16 80.5
MS.gene047481.t1 MTR_7g100510 47.826 69 35 1 332 400 356 423 7.81e-15 77.4
MS.gene047481.t1 MTR_7g110720 50.794 63 31 0 335 397 214 276 9.66e-16 80.1
MS.gene047481.t1 MTR_7g110720 50.794 63 31 0 335 397 187 249 1.11e-15 79.7
MS.gene047481.t1 MTR_1g013790 49.180 61 31 0 337 397 101 161 1.36e-15 77.4
MS.gene047481.t1 MTR_4g094588 47.368 76 38 2 323 398 165 238 1.38e-15 78.6
MS.gene047481.t1 MTR_3g056100 53.846 65 29 1 338 402 403 466 1.87e-15 79.7
MS.gene047481.t1 MTR_3g056100 53.846 65 29 1 338 402 416 479 1.90e-15 79.7
MS.gene047481.t1 MTR_3g056100 53.846 65 29 1 338 402 259 322 2.16e-15 79.0
MS.gene047481.t1 MTR_3g056100 53.846 65 29 1 338 402 272 335 2.21e-15 79.0
MS.gene047481.t1 MTR_5g094430 47.945 73 37 1 326 398 353 424 2.27e-15 79.3
MS.gene047481.t1 MTR_4g082580 50.704 71 34 1 332 402 273 342 2.30e-15 78.6
MS.gene047481.t1 MTR_4g082580 40.816 98 46 3 333 421 141 235 5.46e-11 65.1
MS.gene047481.t1 MTR_5g094430 47.945 73 37 1 326 398 241 312 2.45e-15 79.0
MS.gene047481.t1 MTR_5g094430 47.945 73 37 1 326 398 219 290 2.60e-15 78.6
MS.gene047481.t1 MTR_2g088000 47.887 71 37 0 338 408 350 420 2.71e-15 79.3
MS.gene047481.t1 MTR_7g011820 55.385 65 28 1 334 398 407 470 3.06e-15 79.0
MS.gene047481.t1 MTR_7g011820 52.113 71 32 2 333 403 224 292 1.47e-14 76.6
MS.gene047481.t1 MTR_4g132430 50.000 60 30 0 338 397 128 187 3.20e-15 77.8
MS.gene047481.t1 MTR_5g042920 52.174 69 32 1 334 402 317 384 3.26e-15 78.6
MS.gene047481.t1 MTR_5g042920 53.623 69 30 2 333 401 147 213 9.34e-14 73.9
MS.gene047481.t1 MTR_4g107970 45.455 77 40 1 323 397 162 238 4.07e-15 78.6
MS.gene047481.t1 MTR_2g023930 50.000 60 30 0 338 397 306 365 4.35e-15 78.6
MS.gene047481.t1 MTR_4g107970 45.455 77 40 1 323 397 239 315 6.40e-15 78.2
MS.gene047481.t1 MTR_4g132430 50.000 60 30 0 338 397 262 321 6.92e-15 77.8
MS.gene047481.t1 MTR_4g049790 44.186 86 46 2 325 408 298 383 8.08e-15 77.8
MS.gene047481.t1 MTR_3g031220 57.812 64 25 2 338 401 199 260 8.44e-15 76.6
MS.gene047481.t1 MTR_4g049760 46.479 71 38 0 338 408 291 361 1.06e-14 77.4
MS.gene047481.t1 MTR_4g007060 49.180 61 31 0 337 397 128 188 1.06e-14 75.1
MS.gene047481.t1 MTR_5g074400 52.239 67 31 1 332 398 415 480 1.12e-14 77.4
MS.gene047481.t1 MTR_5g074400 58.333 60 23 2 338 397 244 301 1.14e-13 74.3
MS.gene047481.t1 MTR_3g031220 57.812 64 25 2 338 401 199 260 1.12e-14 77.0
MS.gene047481.t1 MTR_3g031220 49.254 67 33 1 332 398 360 425 1.27e-13 73.9
MS.gene047481.t1 MTR_4g007060 49.180 61 31 0 337 397 162 222 1.21e-14 75.5
MS.gene047481.t1 MTR_3g009470 50.704 71 33 2 337 407 280 348 1.24e-14 77.4
MS.gene047481.t1 MTR_3g009470 54.098 61 27 1 338 398 496 555 7.98e-14 74.7
MS.gene047481.t1 MTR_3g009470 50.704 71 33 2 337 407 280 348 1.61e-14 76.6
MS.gene047481.t1 MTR_7g062220 45.455 88 40 4 324 410 113 193 1.64e-14 75.1
MS.gene047481.t1 MTR_7g009730 52.632 57 27 0 338 394 220 276 2.33e-14 76.3
MS.gene047481.t1 MTR_4g094412 51.667 60 29 0 338 397 235 294 2.47e-14 75.9
MS.gene047481.t1 MTR_4g094412 51.667 60 29 0 338 397 244 303 3.15e-14 75.5
MS.gene047481.t1 MTR_4g122530 42.029 69 39 1 338 406 209 276 3.70e-14 75.1
MS.gene047481.t1 MTR_7g080020 51.389 72 33 2 337 408 280 349 5.74e-14 75.5
MS.gene047481.t1 MTR_7g080020 45.455 77 41 1 332 408 488 563 6.48e-14 75.1
MS.gene047481.t1 MTR_7g080000 43.299 97 48 3 337 433 234 323 5.94e-14 75.1
MS.gene047481.t1 MTR_7g080000 49.254 67 33 1 332 398 427 492 2.79e-13 73.2
MS.gene047481.t1 MTR_5g097490 54.098 61 27 1 338 398 253 312 6.59e-14 73.9
MS.gene047481.t1 MTR_5g097490 52.941 68 30 2 333 400 88 153 8.40e-14 73.6
MS.gene047481.t1 MTR_7g071120 43.011 93 49 3 309 401 140 228 1.30e-13 73.6
MS.gene047481.t1 MTR_7g071120 41.379 87 50 1 311 397 298 383 6.85e-12 68.2
MS.gene047481.t1 MTR_1g013760 48.276 58 30 0 338 395 141 198 1.77e-13 71.6
MS.gene047481.t1 MTR_7g109800 39.759 83 47 2 325 405 131 212 1.80e-13 71.6
MS.gene047481.t1 MTR_4g130900 47.692 65 33 1 338 402 360 423 1.99e-13 73.2
MS.gene047481.t1 MTR_3g095040 45.312 64 34 1 334 397 115 177 2.66e-13 69.3
MS.gene047481.t1 MTR_4g013260 50.000 64 31 1 334 397 333 395 2.93e-13 72.8
MS.gene047481.t1 MTR_4g013260 42.857 77 43 1 321 397 168 243 8.20e-12 68.2
MS.gene047481.t1 MTR_5g091390 46.774 62 32 1 337 398 157 217 3.05e-13 71.2
MS.gene047481.t1 MTR_3g095080 44.286 70 36 2 328 395 157 225 3.33e-13 70.1
MS.gene047481.t1 MTR_2g105060 46.774 62 33 0 337 398 94 155 3.37e-13 70.1
MS.gene047481.t1 MTR_2g105060 46.774 62 33 0 337 398 169 230 4.59e-13 70.9
MS.gene047481.t1 MTR_8g007270 48.438 64 32 1 332 395 149 211 4.93e-13 69.3
MS.gene047481.t1 MTR_3g095080 44.286 70 36 2 328 395 133 201 6.00e-13 68.9
MS.gene047481.t1 MTR_8g092140 45.312 64 34 1 332 395 155 217 6.30e-13 68.9
MS.gene047481.t1 MTR_1g015140 47.541 61 31 1 334 394 99 158 6.72e-13 67.4
MS.gene047481.t1 MTR_8g092010 45.312 64 34 1 334 397 105 167 8.39e-13 67.4
MS.gene047481.t1 MTR_5g043880 37.755 98 59 2 308 405 96 191 1.09e-12 68.9
MS.gene047481.t1 MTR_5g067680 50.847 59 27 1 336 392 201 259 1.56e-12 69.7
MS.gene047481.t1 MTR_1g078260 33.333 120 57 4 313 410 209 327 3.36e-12 69.3
MS.gene047481.t1 MTR_7g079010 45.161 62 33 1 333 394 137 197 4.50e-12 66.2
MS.gene047481.t1 MTR_7g028415 42.623 61 34 1 334 394 90 149 1.67e-11 63.5
MS.gene047481.t1 MTR_7g028710 42.623 61 34 1 334 394 90 149 1.67e-11 63.5
MS.gene047481.t1 MTR_1g077780 47.692 65 33 1 334 398 59 122 4.03e-11 61.6
MS.gene047481.t1 MTR_6g086555 46.154 65 33 2 338 401 207 270 4.09e-11 65.5
MS.gene047481.t1 MTR_3g104750 45.902 61 32 1 334 394 101 160 4.99e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047481.t1 AT5G52830 53.061 98 44 2 315 412 144 239 1.07e-26 111
MS.gene047481.t1 AT4G01250 49.485 97 48 1 315 411 106 201 1.09e-26 110
MS.gene047481.t1 AT3G04670 50.000 94 37 1 313 396 228 321 1.75e-24 105
MS.gene047481.t1 AT5G28650 48.936 94 38 1 313 396 228 321 3.40e-24 103
MS.gene047481.t1 AT4G31550 48.958 96 42 2 313 403 218 311 1.69e-23 102
MS.gene047481.t1 AT2G24570 60.000 70 28 0 334 403 240 309 1.82e-23 101
MS.gene047481.t1 AT4G31550 58.571 70 29 0 334 403 243 312 3.70e-23 100
MS.gene047481.t1 AT4G23550 48.352 91 46 1 321 411 124 213 1.20e-22 99.4
MS.gene047481.t1 AT2G23320 53.488 86 33 2 315 395 215 298 1.23e-22 99.4
MS.gene047481.t1 AT4G24240 50.505 99 42 2 302 395 243 339 2.15e-22 99.4
MS.gene047481.t1 AT2G34830 45.455 99 44 2 317 406 186 283 2.87e-22 100
MS.gene047481.t1 AT2G34830 45.455 99 44 2 317 406 195 292 3.44e-22 99.8
MS.gene047481.t1 AT2G30590 50.000 94 37 2 313 396 279 372 4.96e-22 98.6
MS.gene047481.t1 AT5G45050 47.778 90 46 1 317 406 1021 1109 9.18e-22 100
MS.gene047481.t1 AT5G45050 47.778 90 46 1 317 406 1160 1248 9.50e-22 100
MS.gene047481.t1 AT5G45050 47.778 90 46 1 317 406 1132 1220 1.10e-21 100
MS.gene047481.t1 AT1G30650 38.235 136 69 4 281 406 155 285 1.90e-21 97.4
MS.gene047481.t1 AT1G29280 59.677 62 25 0 336 397 73 134 1.06e-20 92.4
MS.gene047481.t1 AT3G58710 55.224 67 30 0 336 402 70 136 2.90e-20 91.3
MS.gene047481.t1 AT3G58710 55.224 67 30 0 336 402 69 135 2.98e-20 91.3
MS.gene047481.t1 AT3G01080 56.250 64 27 1 334 397 341 403 3.17e-16 81.6
MS.gene047481.t1 AT3G01080 42.268 97 45 4 333 424 201 291 2.31e-15 79.0
MS.gene047481.t1 AT3G01080 56.250 64 27 1 334 397 303 365 4.16e-16 81.3
MS.gene047481.t1 AT3G01080 42.268 97 45 4 333 424 163 253 3.02e-15 78.6
MS.gene047481.t1 AT1G69810 47.222 72 37 1 338 408 146 217 6.66e-16 79.7
MS.gene047481.t1 AT3G01080 42.268 97 45 4 333 424 201 291 6.74e-16 79.3
MS.gene047481.t1 AT1G62300 51.667 60 29 0 338 397 313 372 7.31e-16 81.3
MS.gene047481.t1 AT1G69810 47.222 72 37 1 338 408 204 275 7.45e-16 80.1
MS.gene047481.t1 AT4G22070 51.667 60 29 0 338 397 298 357 8.55e-16 80.9
MS.gene047481.t1 AT4G22070 51.667 60 29 0 338 397 298 357 8.55e-16 80.9
MS.gene047481.t1 AT4G22070 51.667 60 29 0 338 397 298 357 8.55e-16 80.9
MS.gene047481.t1 AT4G22070 51.667 60 29 0 338 397 298 357 8.55e-16 80.9
MS.gene047481.t1 AT4G04450 44.737 76 42 0 338 413 199 274 1.07e-15 80.1
MS.gene047481.t1 AT2G47260 42.708 96 48 3 317 406 148 242 1.28e-15 79.0
MS.gene047481.t1 AT2G03340 54.688 64 28 1 334 397 412 474 1.39e-15 80.1
MS.gene047481.t1 AT2G03340 50.000 70 33 2 333 402 246 313 1.32e-12 70.9
MS.gene047481.t1 AT4G04450 44.737 76 42 0 338 413 293 368 1.93e-15 79.7
MS.gene047481.t1 AT1G64000 40.476 84 47 2 313 394 88 170 4.87e-15 74.3
MS.gene047481.t1 AT5G15130 40.698 86 49 1 314 397 160 245 6.23e-15 77.8
MS.gene047481.t1 AT2G38470 53.030 66 30 1 332 397 357 421 6.99e-15 77.8
MS.gene047481.t1 AT2G38470 50.000 76 36 2 322 397 169 242 9.44e-15 77.4
MS.gene047481.t1 AT5G15130 40.698 86 49 1 314 397 202 287 7.31e-15 77.8
MS.gene047481.t1 AT1G13960 53.125 64 29 1 334 397 406 468 1.05e-14 77.4
MS.gene047481.t1 AT1G13960 52.308 65 29 2 333 397 225 287 1.81e-12 70.1
MS.gene047481.t1 AT1G18860 51.667 60 29 0 338 397 240 299 1.29e-14 77.0
MS.gene047481.t1 AT1G13960 53.125 64 29 1 334 397 253 315 1.67e-14 75.9
MS.gene047481.t1 AT1G13960 50.000 70 33 2 333 402 72 139 4.12e-12 68.2
MS.gene047481.t1 AT2G04880 53.333 60 27 1 338 397 308 366 1.90e-14 76.3
MS.gene047481.t1 AT2G04880 53.333 60 27 1 338 397 284 342 1.92e-14 76.3
MS.gene047481.t1 AT3G62340 49.206 63 29 2 338 399 119 179 2.24e-14 74.3
MS.gene047481.t1 AT1G68150 51.667 60 29 0 338 397 236 295 2.42e-14 75.5
MS.gene047481.t1 AT1G29860 45.946 74 37 2 327 398 124 196 2.65e-14 73.9
MS.gene047481.t1 AT5G43290 59.649 57 22 1 338 394 115 170 3.09e-14 73.6
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 206 265 3.13e-14 75.1
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 206 265 3.13e-14 75.1
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 206 265 3.13e-14 75.1
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 206 265 3.13e-14 75.1
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 342 401 3.34e-14 75.9
MS.gene047481.t1 AT1G80840 45.161 62 34 0 337 398 146 207 3.44e-14 73.9
MS.gene047481.t1 AT5G07100 47.297 74 38 1 332 405 229 301 3.65e-14 73.9
MS.gene047481.t1 AT5G07100 45.588 68 36 1 330 397 110 176 5.63e-12 67.4
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 382 441 3.75e-14 75.9
MS.gene047481.t1 AT4G26640 54.098 61 27 1 338 398 310 369 4.05e-14 75.5
MS.gene047481.t1 AT4G18170 47.297 74 36 2 327 398 160 232 4.64e-14 73.9
MS.gene047481.t1 AT2G30250 52.459 61 28 1 338 398 329 388 6.11e-14 74.3
MS.gene047481.t1 AT2G30250 50.769 65 30 2 338 402 167 229 3.76e-12 68.6
MS.gene047481.t1 AT5G41570 47.619 63 32 1 332 394 93 154 6.34e-14 70.9
MS.gene047481.t1 AT5G07100 47.297 74 38 1 332 405 136 208 6.96e-14 71.6
MS.gene047481.t1 AT5G07100 43.836 73 40 1 330 402 17 88 1.05e-11 65.1
MS.gene047481.t1 AT5G07100 47.297 74 38 1 332 405 136 208 6.96e-14 71.6
MS.gene047481.t1 AT5G07100 43.836 73 40 1 330 402 17 88 1.05e-11 65.1
MS.gene047481.t1 AT5G07100 47.297 74 38 1 332 405 136 208 6.96e-14 71.6
MS.gene047481.t1 AT5G07100 43.836 73 40 1 330 402 17 88 1.05e-11 65.1
MS.gene047481.t1 AT5G07100 47.297 74 38 1 332 405 136 208 6.96e-14 71.6
MS.gene047481.t1 AT5G07100 43.836 73 40 1 330 402 17 88 1.05e-11 65.1
MS.gene047481.t1 AT5G56270 50.746 67 32 1 332 398 482 547 7.27e-14 75.1
MS.gene047481.t1 AT5G56270 52.308 65 29 2 337 401 273 335 8.25e-13 71.6
MS.gene047481.t1 AT4G01720 50.000 60 30 0 338 397 240 299 7.27e-14 74.7
MS.gene047481.t1 AT5G26170 51.613 62 29 1 334 395 110 170 8.34e-14 70.1
MS.gene047481.t1 AT4G30935 49.231 65 32 1 338 402 332 395 8.43e-14 74.3
MS.gene047481.t1 AT4G31800 45.902 61 33 0 337 397 111 171 9.26e-14 71.6
MS.gene047481.t1 AT1G55600 40.000 80 47 1 318 397 288 366 1.13e-13 73.9
MS.gene047481.t1 AT2G21900 50.820 61 29 1 338 398 110 169 1.21e-13 70.5
MS.gene047481.t1 AT2G44745 49.206 63 31 1 332 394 140 201 1.27e-13 70.9
MS.gene047481.t1 AT2G37260 57.377 61 24 2 338 398 166 224 1.37e-13 73.6
MS.gene047481.t1 AT2G37260 41.667 84 43 3 315 394 324 405 3.28e-13 72.4
MS.gene047481.t1 AT5G46350 50.000 62 30 1 337 398 183 243 1.91e-13 72.0
MS.gene047481.t1 AT4G31800 45.902 61 33 0 337 397 176 236 1.98e-13 71.6
MS.gene047481.t1 AT2G37260 57.377 61 24 2 338 398 86 144 2.04e-13 72.4
MS.gene047481.t1 AT2G37260 41.667 84 43 3 315 394 244 325 5.75e-13 70.9
MS.gene047481.t1 AT2G37260 57.377 61 24 2 338 398 84 142 2.22e-13 72.0
MS.gene047481.t1 AT2G37260 41.667 84 43 3 315 394 242 323 5.98e-13 70.9
MS.gene047481.t1 AT4G26440 49.296 71 34 2 338 408 179 247 2.39e-13 73.2
MS.gene047481.t1 AT4G26440 39.535 86 51 1 332 417 367 451 2.32e-12 70.1
MS.gene047481.t1 AT5G45260 48.485 66 32 1 338 401 1209 1274 4.99e-13 72.8
MS.gene047481.t1 AT5G49520 48.333 60 30 1 338 397 222 280 5.01e-13 71.6
MS.gene047481.t1 AT1G69310 38.462 91 54 2 315 405 126 214 9.08e-13 69.3
MS.gene047481.t1 AT1G69310 38.462 91 54 2 315 405 126 214 9.08e-13 69.3
MS.gene047481.t1 AT1G69310 38.462 91 54 2 315 405 126 214 9.08e-13 69.3
MS.gene047481.t1 AT2G25000 44.262 61 34 0 337 397 103 163 1.61e-12 67.8
MS.gene047481.t1 AT2G25000 44.262 61 34 0 337 397 103 163 1.61e-12 67.8
MS.gene047481.t1 AT2G25000 44.262 61 34 0 337 397 125 185 2.06e-12 67.8
MS.gene047481.t1 AT2G40740 42.683 82 42 2 316 392 149 230 2.95e-12 68.2
MS.gene047481.t1 AT2G40740 42.683 82 42 2 316 392 158 239 3.45e-12 67.8
MS.gene047481.t1 AT2G25000 44.262 61 34 0 337 397 146 206 5.94e-12 67.0
MS.gene047481.t1 AT2G46130 40.000 80 47 1 315 394 8 86 1.12e-11 62.4
MS.gene047481.t1 AT4G39410 48.276 58 29 1 338 395 224 280 1.12e-11 66.6
MS.gene047481.t1 AT3G01970 47.692 65 31 2 338 400 66 129 2.00e-11 62.8
MS.gene047481.t1 AT5G13080 43.860 57 31 1 338 394 68 123 2.27e-11 62.4
MS.gene047481.t1 AT1G66560 41.304 92 48 3 306 392 70 160 4.84e-11 63.9
MS.gene047481.t1 AT1G66550 43.750 80 41 2 317 392 86 165 5.06e-11 63.9
MS.gene047481.t1 AT1G66550 43.902 82 42 2 315 392 79 160 5.56e-11 63.5

Find 158 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTAAATGCTAGAAATT+TGG 0.075722 2.4:-63221200 MS.gene047481:CDS
ACCCAAATTTCTAGCATTTA+AGG 0.127042 2.4:+63221198 None:intergenic
CTCTCTAATAGTTCTATTTC+TGG 0.157050 2.4:+63221253 None:intergenic
CATGAACACTAGTGTTTATC+AGG 0.198077 2.4:+63222520 None:intergenic
CTCCATGCCCACGGGTCTTT+TGG 0.209857 2.4:+63221907 None:intergenic
ATGAATCCAGTTTCAGAATA+AGG 0.224140 2.4:+63221097 None:intergenic
CCGTGGGCATGGAGGAAATA+TGG 0.249497 2.4:-63221898 MS.gene047481:CDS
CGGATGTGGAGACCCTTTAA+TGG 0.271178 2.4:+63221867 None:intergenic
TCCTTAAATGCTAGAAATTT+GGG 0.273355 2.4:-63221199 MS.gene047481:CDS
GGTGGGGATGGTGGTGGTCA+AGG 0.277140 2.4:+63222692 None:intergenic
GATAGTGTAGGTGGTGGTGG+CGG 0.292237 2.4:+63222722 None:intergenic
GATTACAGTGGCAGTGATAA+TGG 0.292582 2.4:+63222587 None:intergenic
ACCCGTAACATTGCTACTTT+GGG 0.294068 2.4:+63221141 None:intergenic
GGGGATGGTGGTGGTCAAGG+GGG 0.302266 2.4:+63222695 None:intergenic
GTGGGGATGGTGGTGGTCAA+GGG 0.302668 2.4:+63222693 None:intergenic
TATTCTGAAACTGGATTCAT+TGG 0.302973 2.4:-63221094 MS.gene047481:CDS
ATAGTTCTATTTCTGGATAA+AGG 0.309444 2.4:+63221260 None:intergenic
CACCCGTAACATTGCTACTT+TGG 0.310787 2.4:+63221140 None:intergenic
ATAGTGTAGGTGGTGGTGGC+GGG 0.318835 2.4:+63222723 None:intergenic
AACCTCCCTTATTCTGAAAC+TGG 0.323380 2.4:-63221103 MS.gene047481:CDS
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2.4:+63222694 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2.4:+63222837 None:intergenic
TGGGATAGTGTAGGTGGTGG+TGG 0.332732 2.4:+63222719 None:intergenic
TGCAACGCTACCACATTTAC+TGG 0.340291 2.4:-63222999 MS.gene047481:CDS
AGTGTAGGTGGTGGTGGCGG+GGG 0.341815 2.4:+63222725 None:intergenic
GGGTATTGGAAAATTATAAT+TGG 0.342276 2.4:+63222479 None:intergenic
GGGATGGTGGTGGTCAAGGG+GGG 0.345552 2.4:+63222696 None:intergenic
TAGTGTAGGTGGTGGTGGCG+GGG 0.346368 2.4:+63222724 None:intergenic
ATAATTTGTGGGATATTGAT+TGG 0.356463 2.4:+63222266 None:intergenic
CACTATGCGGATCAAGAAAA+AGG 0.357686 2.4:-63222110 MS.gene047481:intron
TGCTCTTAGCAGATATGATT+GGG 0.361525 2.4:+63222319 None:intergenic
TTACACTCTGCGGAAGAAAC+TGG 0.365125 2.4:-63221388 MS.gene047481:CDS
TCTAGATCTATGAAGTCATT+TGG 0.366608 2.4:+63222828 None:intergenic
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2.4:-63221347 MS.gene047481:CDS
GTGCTTGTAGCAGATATGAT+AGG 0.367308 2.4:+63222546 None:intergenic
ATCTGCAACATCACCATACT+AGG 0.367397 2.4:+63221334 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2.4:+63222179 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2.4:+63222407 None:intergenic
TTGAGGGAATGTGATGTTAT+TGG 0.370353 2.4:+63222926 None:intergenic
TGATAGGGGTAGTGGTGGTC+GGG 0.373880 2.4:+63222562 None:intergenic
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2.4:+63221040 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2.4:-63221026 MS.gene047481:CDS
GGTTGGATGCACGATCAAAA+TGG 0.380288 2.4:+63222373 None:intergenic
GTTAGTGATGTGGGTGGGGA+TGG 0.386412 2.4:+63222680 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2.4:+63222180 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2.4:+63222408 None:intergenic
TGTTGTTGTCCAGCGGGTAT+TGG 0.401974 2.4:+63222465 None:intergenic
CAAAATGATGTGACACTTTG+AGG 0.402726 2.4:+63222909 None:intergenic
ATAATTGGCGGGATATTGAT+TGG 0.402825 2.4:+63222494 None:intergenic
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2.4:+63222945 None:intergenic
ATTACAGTGGCAGTGATAAT+GGG 0.403708 2.4:+63222588 None:intergenic
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2.4:-63221442 MS.gene047481:CDS
CAGCGCAAGTCACTGGAGAC+TGG 0.413600 2.4:-63221412 MS.gene047481:CDS
GGATGTGGAGACCCTTTAAT+GGG 0.418234 2.4:+63221868 None:intergenic
TTGATTGATCAGCGAGAACC+TGG 0.424637 2.4:+63221287 None:intergenic
GTGCTCTTAGCAGATATGAT+TGG 0.424710 2.4:+63222318 None:intergenic
AGTGATGTGGGTGGGGATGG+TGG 0.428433 2.4:+63222683 None:intergenic
ATTGGGAAATTATAATTTGT+GGG 0.434731 2.4:+63222255 None:intergenic
AGTGGTGGGAATAGTGATGG+TGG 0.436219 2.4:+63222626 None:intergenic
CCCCAAAGTAGCAATGTTAC+GGG 0.440507 2.4:-63221142 MS.gene047481:CDS
ACAACATTCTTATTAAATGT+TGG 0.443200 2.4:+63221448 None:intergenic
CATTGGGAAATTATAATTTG+TGG 0.445048 2.4:+63222254 None:intergenic
TATAGCACACCAATGCCATT+TGG 0.445367 2.4:+63221947 None:intergenic
TGAATCCAGTTTCAGAATAA+GGG 0.447038 2.4:+63221098 None:intergenic
AGTGGGAGCTGAGGTGGGGA+TGG 0.450737 2.4:+63222782 None:intergenic
ATACTAGTGGGAGCTGAGGT+GGG 0.454923 2.4:+63222777 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.455016 2.4:+63222326 None:intergenic
GAATGTGATGTTATTGGTAG+TGG 0.458828 2.4:+63222932 None:intergenic
GCCCCAAAGTAGCAATGTTA+CGG 0.458952 2.4:-63221143 MS.gene047481:CDS
ATGATAGGGGTAGTGGTGGT+CGG 0.463932 2.4:+63222561 None:intergenic
GATGTGGGTGGGGATGGTGG+TGG 0.464748 2.4:+63222686 None:intergenic
TAATGTTAGTGATGTGGGTG+GGG 0.465398 2.4:+63222676 None:intergenic
TACATCCCAGCGCAAGTCAC+TGG 0.469837 2.4:-63221419 MS.gene047481:CDS
ATTGGAAAATTATAATTGGC+GGG 0.476395 2.4:+63222483 None:intergenic
CCATATTTCCTCCATGCCCA+CGG 0.476436 2.4:+63221898 None:intergenic
ATGGACTTCAAGTGCCTCAA+TGG 0.476923 2.4:-63221007 MS.gene047481:CDS
CGTGGGCATGGAGGAAATAT+GGG 0.481905 2.4:-63221897 MS.gene047481:CDS
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2.4:+63222838 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2.4:+63222954 None:intergenic
ACCTGGGTATTGCTGCTCTC+CGG 0.486470 2.4:+63221304 None:intergenic
TGGCATTGGTGTGCTATATG+AGG 0.487449 2.4:-63221942 MS.gene047481:CDS
GGGTGGGATAGTGTAGGTGG+TGG 0.487925 2.4:+63222716 None:intergenic
TTACCCTCTGTGGAAGAAGT+TGG 0.488537 2.4:-63221226 MS.gene047481:CDS
CAGTCTCCAGTGACTTGCGC+TGG 0.491501 2.4:+63221413 None:intergenic
CATACTAGTGGGAGCTGAGG+TGG 0.495210 2.4:+63222776 None:intergenic
TGCTTGTAGCAGATATGATA+GGG 0.497057 2.4:+63222547 None:intergenic
ATCACCATACTAGGGGAACC+TGG 0.508434 2.4:+63221343 None:intergenic
GTGGGAGCTGAGGTGGGGAT+GGG 0.514412 2.4:+63222783 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2.4:-63221962 MS.gene047481:CDS
ACTTATATTGTAACATATGA+AGG 0.520110 2.4:-63221490 MS.gene047481:CDS
TATTGGAAAATTATAATTGG+CGG 0.522883 2.4:+63222482 None:intergenic
AAAATGATGTGACACTTTGA+GGG 0.523645 2.4:+63222910 None:intergenic
GATGTTGCAGATCGATCATC+CGG 0.525110 2.4:-63221323 MS.gene047481:CDS
ATATTTGTAAACCTCGGATG+TGG 0.527362 2.4:+63221853 None:intergenic
AGCAGATATGATAGGGGTAG+TGG 0.527593 2.4:+63222554 None:intergenic
TTCCAAAAGACCCGTGGGCA+TGG 0.527766 2.4:-63221909 MS.gene047481:CDS
CGCATAGTGCAACCGATGGA+TGG 0.529058 2.4:+63222124 None:intergenic
AGTCTCCAGTGACTTGCGCT+GGG 0.530524 2.4:+63221414 None:intergenic
ACATAATAACCAAATGGCAT+TGG 0.531292 2.4:-63221956 MS.gene047481:CDS
TCTACAAACATCACAAATCC+AGG 0.538062 2.4:-63221361 MS.gene047481:CDS
TTGAATTTGTTGTTGTCCAG+CGG 0.540268 2.4:+63222458 None:intergenic
AGCGCAAGTCACTGGAGACT+GGG 0.541737 2.4:-63221411 MS.gene047481:CDS
TATAATTTCCCAATGCACGC+TGG 0.543748 2.4:-63222246 MS.gene047481:CDS
GATAGGGGTAGTGGTGGTCG+GGG 0.550830 2.4:+63222563 None:intergenic
GTTGGATGCACGATCAAAAT+GGG 0.551415 2.4:+63222374 None:intergenic
TGGCATACTAGTGGGAGCTG+AGG 0.554747 2.4:+63222773 None:intergenic
GGCGATAACTGATGGATGGT+TGG 0.556513 2.4:+63222356 None:intergenic
CATATTTCCTCCATGCCCAC+GGG 0.559003 2.4:+63221899 None:intergenic
AGTGTTAATGTTAGTGATGT+GGG 0.567585 2.4:+63222671 None:intergenic
TACTAGTGGGAGCTGAGGTG+GGG 0.568500 2.4:+63222778 None:intergenic
TGATACCAAACATAACAGCT+TGG 0.570214 2.4:-63221045 MS.gene047481:CDS
GTGGTGGGAATAGTGATGGT+GGG 0.572780 2.4:+63222627 None:intergenic
GATTGGGGTAGTGGTGGTCG+AGG 0.574650 2.4:+63222335 None:intergenic
GGGAGTGGTGGGAATAGTGA+TGG 0.578338 2.4:+63222623 None:intergenic
TGAATTTGTTGTTGTCCAGC+GGG 0.581001 2.4:+63222459 None:intergenic
TCTGCAACATCACCATACTA+GGG 0.581668 2.4:+63221335 None:intergenic
TTGATTGGTTTCATGAACAC+TGG 0.583186 2.4:+63222281 None:intergenic
GGAATATAGCGCCACCATTG+AGG 0.585327 2.4:+63220993 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2.4:+63222951 None:intergenic
ATGAACACTGGTGTTTGTCA+TGG 0.597215 2.4:+63222293 None:intergenic
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2.4:+63222948 None:intergenic
GTGGTCGAGGCGATAACTGA+TGG 0.602965 2.4:+63222348 None:intergenic
TCCGGAGAGCAGCAATACCC+AGG 0.606173 2.4:-63221305 MS.gene047481:CDS
TTAAGTGGGGCAAAAGAGAG+TGG 0.609094 2.4:+63222852 None:intergenic
ATGAACACTAGTGTTTATCA+GGG 0.614534 2.4:+63222521 None:intergenic
ATCCAGTTTCAGAATAAGGG+AGG 0.616537 2.4:+63221101 None:intergenic
GACTTCAAGTGCCTCAATGG+TGG 0.617561 2.4:-63221004 MS.gene047481:CDS
TTAATGTTAGTGATGTGGGT+GGG 0.619756 2.4:+63222675 None:intergenic
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2.4:+63222839 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.623098 2.4:-63221564 MS.gene047481:CDS
TAGTGTTAATGTTAGTGATG+TGG 0.624324 2.4:+63222670 None:intergenic
TTACAGTGGCAGTGATAATG+GGG 0.626243 2.4:+63222589 None:intergenic
GTTGGTAGGACCAGTAAATG+TGG 0.630317 2.4:+63222989 None:intergenic
CCCGTAACATTGCTACTTTG+GGG 0.630454 2.4:+63221142 None:intergenic
TTAAAGGGTCTCCACATCCG+AGG 0.642226 2.4:-63221864 MS.gene047481:intron
AGATATGATTGGGGTAGTGG+TGG 0.642708 2.4:+63222329 None:intergenic
ATGAGCTTCCAAAAGACCCG+TGG 0.645013 2.4:-63221915 MS.gene047481:CDS
CAAAAGACCCGTGGGCATGG+AGG 0.646342 2.4:-63221906 MS.gene047481:CDS
GATCCGCATAGTGCAACCGA+TGG 0.649098 2.4:+63222120 None:intergenic
GATCCAACTTCTTCCACAGA+GGG 0.650056 2.4:+63221223 None:intergenic
CATCCATCGGTTGCACTATG+CGG 0.659476 2.4:-63222123 MS.gene047481:CDS
AGATATGATAGGGGTAGTGG+TGG 0.663183 2.4:+63222557 None:intergenic
TCGAGGCGATAACTGATGGA+TGG 0.664288 2.4:+63222352 None:intergenic
AGAGAGTCACTTACCCTCTG+TGG 0.665669 2.4:-63221236 MS.gene047481:CDS
TGATTGATCAGCGAGAACCT+GGG 0.667246 2.4:+63221288 None:intergenic
TGAGCTTCCAAAAGACCCGT+GGG 0.668568 2.4:-63221914 MS.gene047481:CDS
GGCATTGGTGTGCTATATGA+GGG 0.674239 2.4:-63221941 MS.gene047481:CDS
GTATGCACGTTCAAAATGAG+TGG 0.675266 2.4:+63222149 None:intergenic
GCTTGTAGCAGATATGATAG+GGG 0.681969 2.4:+63222548 None:intergenic
GCTCTTAGCAGATATGATTG+GGG 0.685620 2.4:+63222320 None:intergenic
ACGTGCATACAACCATCCAT+CGG 0.691580 2.4:-63222136 MS.gene047481:CDS
GGTGGTCGGGGTGATTACAG+TGG 0.694133 2.4:+63222575 None:intergenic
GTTAATGTTAGTGATGTGGG+TGG 0.694254 2.4:+63222674 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2.4:+63221336 None:intergenic
GGATGCACGATCAAAATGGG+TGG 0.719593 2.4:+63222377 None:intergenic
TACAGTGGCAGTGATAATGG+GGG 0.720290 2.4:+63222590 None:intergenic
GGAGACTGGGTTACACTCTG+CGG 0.721711 2.4:-63221398 MS.gene047481:CDS
TGATCCAACTTCTTCCACAG+AGG 0.749435 2.4:+63221222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTATTGTTTATAATG+TGG + chr2.4:63222237-63222256 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG - chr2.4:63222387-63222406 MS.gene047481:CDS 15.0%
!! ACAACATTCTTATTAAATGT+TGG + chr2.4:63222584-63222603 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG - chr2.4:63222539-63222558 MS.gene047481:CDS 20.0%
!! ATTTCTTTCAACATCATTTA+TGG + chr2.4:63222425-63222444 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG - chr2.4:63222067-63222086 MS.gene047481:intron 20.0%
!! TATTGGAAAATTATAATTGG+CGG + chr2.4:63221550-63221569 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG - chr2.4:63222587-63222606 MS.gene047481:CDS 20.0%
!!! ATTGGGAAATTATAATTTGT+GGG + chr2.4:63221777-63221796 None:intergenic 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG + chr2.4:63222056-63222075 None:intergenic 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG + chr2.4:63222185-63222204 None:intergenic 20.0%
! AAATCAATAAATGATGTTGC+AGG - chr2.4:63222441-63222460 MS.gene047481:CDS 25.0%
! ATCCTTAAATGCTAGAAATT+TGG - chr2.4:63222829-63222848 MS.gene047481:CDS 25.0%
! ATTGGAAAATTATAATTGGC+GGG + chr2.4:63221549-63221568 None:intergenic 25.0%
! CATTGGGAAATTATAATTTG+TGG + chr2.4:63221778-63221797 None:intergenic 25.0%
! TCCTTAAATGCTAGAAATTT+GGG - chr2.4:63222830-63222849 MS.gene047481:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG - chr2.4:63223003-63223022 MS.gene047481:CDS 25.0%
!! ATAATTTGTGGGATATTGAT+TGG + chr2.4:63221766-63221785 None:intergenic 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG + chr2.4:63222772-63222791 None:intergenic 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG + chr2.4:63221553-63221572 None:intergenic 25.0%
AAAATGATGTGACACTTTGA+GGG + chr2.4:63221122-63221141 None:intergenic 30.0%
ACATAATAACCAAATGGCAT+TGG - chr2.4:63222073-63222092 MS.gene047481:intron 30.0%
AGTGTTAATGTTAGTGATGT+GGG + chr2.4:63221361-63221380 None:intergenic 30.0%
ATGAACACTAGTGTTTATCA+GGG + chr2.4:63221511-63221530 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG + chr2.4:63222935-63222954 None:intergenic 30.0%
TAGTGTTAATGTTAGTGATG+TGG + chr2.4:63221362-63221381 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG + chr2.4:63221204-63221223 None:intergenic 30.0%
TGAATCCAGTTTCAGAATAA+GGG + chr2.4:63222934-63222953 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG + chr2.4:63221195-63221214 None:intergenic 30.0%
! CTCTCTAATAGTTCTATTTC+TGG + chr2.4:63222779-63222798 None:intergenic 30.0%
! GGATTTTCAAAAATGTTGGT+AGG + chr2.4:63221057-63221076 None:intergenic 30.0%
! TACAATTATATGCACTGACA+AGG + chr2.4:63222319-63222338 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG + chr2.4:63221194-63221213 None:intergenic 30.0%
! TTTTCAACCTTTTTTCTTGC+TGG + chr2.4:63222500-63222519 None:intergenic 30.0%
!! ACCCAAATTTCTAGCATTTA+AGG + chr2.4:63222834-63222853 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG - chr2.4:63222935-63222954 MS.gene047481:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG + chr2.4:63221268-63221287 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG + chr2.4:63221267-63221286 None:intergenic 30.0%
AGATTGTCCAGCAAGAAAAA+AGG - chr2.4:63222490-63222509 MS.gene047481:CDS 35.0%
ATAATTGGCGGGATATTGAT+TGG + chr2.4:63221538-63221557 None:intergenic 35.0%
ATATTTGTAAACCTCGGATG+TGG + chr2.4:63222179-63222198 None:intergenic 35.0%
ATCAATGCATGCAACATGTT+TGG + chr2.4:63221625-63221644 None:intergenic 35.0%
ATGGGCAAAAACCCATTAAA+GGG - chr2.4:63222150-63222169 MS.gene047481:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG + chr2.4:63221444-63221463 None:intergenic 35.0%
CAAAATGATGTGACACTTTG+AGG + chr2.4:63221123-63221142 None:intergenic 35.0%
CATGAACACTAGTGTTTATC+AGG + chr2.4:63221512-63221531 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG + chr2.4:63221100-63221119 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG - chr2.4:63222465-63222484 MS.gene047481:CDS 35.0%
TATGGGCAAAAACCCATTAA+AGG - chr2.4:63222149-63222168 MS.gene047481:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG + chr2.4:63221624-63221643 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG - chr2.4:63222668-63222687 MS.gene047481:CDS 35.0%
TGATACCAAACATAACAGCT+TGG - chr2.4:63222984-63223003 MS.gene047481:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG + chr2.4:63221713-63221732 None:intergenic 35.0%
TGCTTGTAGCAGATATGATA+GGG + chr2.4:63221485-63221504 None:intergenic 35.0%
TTAATGTTAGTGATGTGGGT+GGG + chr2.4:63221357-63221376 None:intergenic 35.0%
TTGAGGGAATGTGATGTTAT+TGG + chr2.4:63221106-63221125 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG + chr2.4:63222282-63222301 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG + chr2.4:63221193-63221212 None:intergenic 35.0%
! TATAATTTTCCAATACCCGC+TGG - chr2.4:63221555-63221574 MS.gene047481:CDS 35.0%
!! CGGTGGATTTTCAAAAATGT+TGG + chr2.4:63221061-63221080 None:intergenic 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG + chr2.4:63221574-63221593 None:intergenic 35.0%
!! TTGATTGGTTTCATGAACAC+TGG + chr2.4:63221523-63221542 None:intergenic 35.0%
!!! AAGAGAGTGGACTATTTTCT+TGG + chr2.4:63221167-63221186 None:intergenic 35.0%
ATCCAGTTTCAGAATAAGGG+AGG + chr2.4:63222931-63222950 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG + chr2.4:63222698-63222717 None:intergenic 40.0%
ATGAACACTGGTGTTTGTCA+TGG + chr2.4:63221739-63221758 None:intergenic 40.0%
CACTATGCGGATCAAGAAAA+AGG - chr2.4:63221919-63221938 MS.gene047481:CDS 40.0%
GATTACAGTGGCAGTGATAA+TGG + chr2.4:63221445-63221464 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG + chr2.4:63221712-63221731 None:intergenic 40.0%
GCTTGTAGCAGATATGATAG+GGG + chr2.4:63221484-63221503 None:intergenic 40.0%
GTATGCACGTTCAAAATGAG+TGG + chr2.4:63221883-63221902 None:intergenic 40.0%
GTGCTCTTAGCAGATATGAT+TGG + chr2.4:63221714-63221733 None:intergenic 40.0%
GTGCTTGTAGCAGATATGAT+AGG + chr2.4:63221486-63221505 None:intergenic 40.0%
GTTAATGTTAGTGATGTGGG+TGG + chr2.4:63221358-63221377 None:intergenic 40.0%
GTTGGATGCACGATCAAAAT+GGG + chr2.4:63221658-63221677 None:intergenic 40.0%
TAATGTTAGTGATGTGGGTG+GGG + chr2.4:63221356-63221375 None:intergenic 40.0%
TATAATTTCCCAATGCACGC+TGG - chr2.4:63221783-63221802 MS.gene047481:intron 40.0%
TATAGCACACCAATGCCATT+TGG + chr2.4:63222085-63222104 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG + chr2.4:63222992-63223011 None:intergenic 40.0%
TCTGCAACATCACCATACTA+GGG + chr2.4:63222697-63222716 None:intergenic 40.0%
! CCATCACTGTTTAAAACACG+AGG + chr2.4:63222283-63222302 None:intergenic 40.0%
! TTACAGTGGCAGTGATAATG+GGG + chr2.4:63221443-63221462 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG - chr2.4:63222926-63222945 MS.gene047481:CDS 40.0%
!! ACCCGTAACATTGCTACTTT+GGG + chr2.4:63222891-63222910 None:intergenic 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG - chr2.4:63222280-63222299 MS.gene047481:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG + chr2.4:63221573-63221592 None:intergenic 40.0%
!! TGATAATGGGGGTAATGGTA+GGG + chr2.4:63221431-63221450 None:intergenic 40.0%
!! TTGGTAGTGGTTTCGATTTG+AGG + chr2.4:63221087-63221106 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG + chr2.4:63221279-63221298 None:intergenic 40.0%
AAATCCAGGTTCCCCTAGTA+TGG - chr2.4:63222682-63222701 MS.gene047481:CDS 45.0%
ACGTGCATACAACCATCCAT+CGG - chr2.4:63221893-63221912 MS.gene047481:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG + chr2.4:63221478-63221497 None:intergenic 45.0%
AGCAGATATGATTGGGGTAG+TGG + chr2.4:63221706-63221725 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG - chr2.4:63223022-63223041 MS.gene047481:CDS 45.0%
CCCCAAAGTAGCAATGTTAC+GGG - chr2.4:63222887-63222906 MS.gene047481:CDS 45.0%
CTGCAACATCACCATACTAG+GGG + chr2.4:63222696-63222715 None:intergenic 45.0%
GATCCAACTTCTTCCACAGA+GGG + chr2.4:63222809-63222828 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG - chr2.4:63222706-63222725 MS.gene047481:CDS 45.0%
GCCCCAAAGTAGCAATGTTA+CGG - chr2.4:63222886-63222905 MS.gene047481:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG + chr2.4:63222164-63222183 None:intergenic 45.0%
GGTTGGATGCACGATCAAAA+TGG + chr2.4:63221659-63221678 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG + chr2.4:63222810-63222829 None:intergenic 45.0%
TGATTGATCAGCGAGAACCT+GGG + chr2.4:63222744-63222763 None:intergenic 45.0%
TGCAACGCTACCACATTTAC+TGG - chr2.4:63221030-63221049 MS.gene047481:CDS 45.0%
TTAAGTGGGGCAAAAGAGAG+TGG + chr2.4:63221180-63221199 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG - chr2.4:63222641-63222660 MS.gene047481:CDS 45.0%
TTACCCTCTGTGGAAGAAGT+TGG - chr2.4:63222803-63222822 MS.gene047481:CDS 45.0%
TTGATTGATCAGCGAGAACC+TGG + chr2.4:63222745-63222764 None:intergenic 45.0%
! AGATATGATAGGGGTAGTGG+TGG + chr2.4:63221475-63221494 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG + chr2.4:63221703-63221722 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG + chr2.4:63221429-63221448 None:intergenic 45.0%
! CACCCGTAACATTGCTACTT+TGG + chr2.4:63222892-63222911 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG + chr2.4:63221084-63221103 None:intergenic 45.0%
! GTTGGTAGGACCAGTAAATG+TGG + chr2.4:63221043-63221062 None:intergenic 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG + chr2.4:63221794-63221813 None:intergenic 45.0%
!! CCCGTAACATTGCTACTTTG+GGG + chr2.4:63222890-63222909 None:intergenic 45.0%
!! GATAATGGGGGTAATGGTAG+GGG + chr2.4:63221430-63221449 None:intergenic 45.0%
!! GGCATTGGTGTGCTATATGA+GGG - chr2.4:63222088-63222107 MS.gene047481:intron 45.0%
!! GTGATAATGGGGGTAATGGT+AGG + chr2.4:63221432-63221451 None:intergenic 45.0%
!! TACAGTGGCAGTGATAATGG+GGG + chr2.4:63221442-63221461 None:intergenic 45.0%
!! TGGCATTGGTGTGCTATATG+AGG - chr2.4:63222087-63222106 MS.gene047481:intron 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG + chr2.4:63221795-63221814 None:intergenic 45.0%
AGAGAGTCACTTACCCTCTG+TGG - chr2.4:63222793-63222812 MS.gene047481:CDS 50.0%
AGGGTGCGAGTGTTTGTTTC+AGG + chr2.4:63222263-63222282 None:intergenic 50.0%
ATACTAGTGGGAGCTGAGGT+GGG + chr2.4:63221255-63221274 None:intergenic 50.0%
ATCACCATACTAGGGGAACC+TGG + chr2.4:63222689-63222708 None:intergenic 50.0%
ATGAGCTTCCAAAAGACCCG+TGG - chr2.4:63222114-63222133 MS.gene047481:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG + chr2.4:63222133-63222152 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG + chr2.4:63222134-63222153 None:intergenic 50.0%
CGGATGTGGAGACCCTTTAA+TGG + chr2.4:63222165-63222184 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG - chr2.4:63222132-63222151 MS.gene047481:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG - chr2.4:63223025-63223044 MS.gene047481:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG + chr2.4:63223039-63223058 None:intergenic 50.0%
GGATGCACGATCAAAATGGG+TGG + chr2.4:63221655-63221674 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG + chr2.4:63221680-63221699 None:intergenic 50.0%
TGAGCTTCCAAAAGACCCGT+GGG - chr2.4:63222115-63222134 MS.gene047481:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG + chr2.4:63221567-63221586 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG - chr2.4:63222165-63222184 MS.gene047481:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG + chr2.4:63221406-63221425 None:intergenic 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG + chr2.4:63221471-63221490 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG - chr2.4:63221906-63221925 MS.gene047481:CDS 50.0%
! GGCGATAACTGATGGATGGT+TGG + chr2.4:63221676-63221695 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG + chr2.4:63221405-63221424 None:intergenic 50.0%
! GTGGTTTCGATTTGAGGTGG+CGG + chr2.4:63221081-63221100 None:intergenic 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG + chr2.4:63221436-63221455 None:intergenic 50.0%
AGCGCAAGTCACTGGAGACT+GGG - chr2.4:63222618-63222637 MS.gene047481:CDS 55.0%
CATACTAGTGGGAGCTGAGG+TGG + chr2.4:63221256-63221275 None:intergenic 55.0%
CCGTGGGCATGGAGGAAATA+TGG - chr2.4:63222131-63222150 MS.gene047481:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG + chr2.4:63221908-63221927 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG + chr2.4:63221912-63221931 None:intergenic 55.0%
GGAGACTGGGTTACACTCTG+CGG - chr2.4:63222631-63222650 MS.gene047481:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG + chr2.4:63221420-63221439 None:intergenic 55.0%
GTGGTCGAGGCGATAACTGA+TGG + chr2.4:63221684-63221703 None:intergenic 55.0%
GTTAGTGATGTGGGTGGGGA+TGG + chr2.4:63221352-63221371 None:intergenic 55.0%
TACATCCCAGCGCAAGTCAC+TGG - chr2.4:63222610-63222629 MS.gene047481:CDS 55.0%
TACTAGTGGGAGCTGAGGTG+GGG + chr2.4:63221254-63221273 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG + chr2.4:63221259-63221278 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG - chr2.4:63222120-63222139 MS.gene047481:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG + chr2.4:63222728-63222747 None:intergenic 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG + chr2.4:63222618-63222637 None:intergenic 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG + chr2.4:63221409-63221428 None:intergenic 55.0%
! GTTTCGATTTGAGGTGGCGG+TGG + chr2.4:63221078-63221097 None:intergenic 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG + chr2.4:63221470-63221489 None:intergenic 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG + chr2.4:63221313-63221332 None:intergenic 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG + chr2.4:63221309-63221328 None:intergenic 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG + chr2.4:63221310-63221329 None:intergenic 55.0%
AGTGATGTGGGTGGGGATGG+TGG + chr2.4:63221349-63221368 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG - chr2.4:63222123-63222142 MS.gene047481:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG + chr2.4:63221322-63221341 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG - chr2.4:63222617-63222636 MS.gene047481:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG + chr2.4:63221316-63221335 None:intergenic 60.0%
GGTGGTCGGGGTGATTACAG+TGG + chr2.4:63221457-63221476 None:intergenic 60.0%
TCCGGAGAGCAGCAATACCC+AGG - chr2.4:63222724-63222743 MS.gene047481:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG + chr2.4:63222619-63222638 None:intergenic 60.0%
! CTCCATGCCCACGGGTCTTT+TGG + chr2.4:63222125-63222144 None:intergenic 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG + chr2.4:63221469-63221488 None:intergenic 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG + chr2.4:63221697-63221716 None:intergenic 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG + chr2.4:63221421-63221440 None:intergenic 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG + chr2.4:63221339-63221358 None:intergenic 60.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG + chr2.4:63221308-63221327 None:intergenic 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG + chr2.4:63221338-63221357 None:intergenic 60.0%
AGTGGGAGCTGAGGTGGGGA+TGG + chr2.4:63221250-63221269 None:intergenic 65.0%
GGGGGGTGGGATAGTGTAGG+TGG + chr2.4:63221319-63221338 None:intergenic 65.0%
GTGGGAGCTGAGGTGGGGAT+GGG + chr2.4:63221249-63221268 None:intergenic 65.0%
! GATGTGGGTGGGGATGGTGG+TGG + chr2.4:63221346-63221365 None:intergenic 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG + chr2.4:63221424-63221443 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG + chr2.4:63221307-63221326 None:intergenic 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG + chr2.4:63221333-63221352 None:intergenic 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG + chr2.4:63221336-63221355 None:intergenic 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG + chr2.4:63221337-63221356 None:intergenic 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG + chr2.4:63221340-63221359 None:intergenic 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG + chr2.4:63221332-63221351 None:intergenic 65.0%
GGCGGGGGAAGATGTGGTGG+TGG + chr2.4:63221292-63221311 None:intergenic 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG + chr2.4:63221295-63221314 None:intergenic 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG + chr2.4:63221298-63221317 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 63220988 63223063 63220988 ID=MS.gene047481
chr2.4 mRNA 63220988 63223063 63220988 ID=MS.gene047481.t1;Parent=MS.gene047481
chr2.4 exon 63222111 63223063 63222111 ID=MS.gene047481.t1.exon1;Parent=MS.gene047481.t1
chr2.4 CDS 63222111 63223063 63222111 ID=cds.MS.gene047481.t1;Parent=MS.gene047481.t1
chr2.4 exon 63221865 63221981 63221865 ID=MS.gene047481.t1.exon2;Parent=MS.gene047481.t1
chr2.4 CDS 63221865 63221981 63221865 ID=cds.MS.gene047481.t1;Parent=MS.gene047481.t1
chr2.4 exon 63220988 63221588 63220988 ID=MS.gene047481.t1.exon3;Parent=MS.gene047481.t1
chr2.4 CDS 63220988 63221588 63220988 ID=cds.MS.gene047481.t1;Parent=MS.gene047481.t1
Gene Sequence

>MS.gene047481

ATGGATAATGATGATCAAGATCTCTTTTCTATTGTTCGTAGTTGCAACGCTACCACATTTACTGGTCCTACCAACATTTTTGAAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCAAAGTGTCACATCATTTTGCTCTGATAATCTTACTTTTAACCAAGAAAATAGTCCACTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAGATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCTCAGCTCCCACTAGTATGCCAAAAATCAATACCACCACCACATCTTCCCCCGCCACCACCACCTACACTATCCCACCCCCCTTGACCACCACCATCCCCACCCACATCACTAACATTAACACTAGTGTTCATATTATCAACACTCCCACCATCACTATTCCCACCACTCCCCCTACCATTACCCCCATTATCACTGCCACTGTAATCACCCCGACCACCACTACCCCTATCATATCTGCTACAAGCACTACCCTGATAAACACTAGTGTTCATGAAACCAATCAATATCCCGCCAATTATAATTTTCCAATACCCGCTGGACAACAACAAATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAGCCACCCATTTTGATCGTGCATCCAACCATCCATCAGTTATCGCCTCGACCACCACTACCCCAATCATATCTGCTAAGAGCACTACCATGACAAACACCAGTGTTCATGAAACCAATCAATATCCCACAAATTATAATTTCCCAATGCACGCTGGACAAAAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAACCACTCATTTTGAACGTGCATACAACCATCCATCGGTTGCACTATGCGGATCAAGAAAAAGGTAATGTATTTATTCTATTATTTCATATATTTTAATTATAAATCAATTTTATTATGTCAAAATAATTGAAATATTTGACGTAACTTAGTTCAAGTGAACTAAAATTATTTTACCTTTCTTTTCTTATAGAAAACATAATAACCAAATGGCATTGGTGTGCTATATGAGGGACGATGAGCTTCCAAAAGACCCGTGGGCATGGAGGAAATATGGGCAAAAACCCATTAAAGGGTCTCCACATCCGAGGTTTACAAATATTCAAAACTTTATCTTTAACATATTTCTCTTTTCTTCCACATTATAAACAATAATTTTGTTACCTGAAACAAACACTCGCACCCTCGTGTTTTAAACAGTGATGGTAAGCATTTAGATCCTTGTCAGTGCATATAATTGTAATTAAATTCAACATTTGTTATCTTAATCATAGTTTCGTTTGTGTTTCAATTTTTAAAACATCAAAAACTGGTGTATATTTAGTCCATAAATGATGTTGAAAGAAATCAATAAATGATGTTGCAGGAGCTATTACAAATGTAGCACTTGGTCAGATTGTCCAGCAAGAAAAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATACCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCAGAAATAGAACTATTAGAGAGTCACTTACCCTCTGTGGAAGAAGTTGGATCATCCTTAAATGCTAGAAATTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAGCCCCAAAGTAGCAATGTTACGGGTGTTGTCGATGACTCAAACCTCCCTTATTCTGAAACTGGATTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAAGTGCCTCAATGGTGGCGCTATATTCCCTTAG
Protein sequence

>MS.gene047481.t1

MDNDDQDLFSIVRSCNATTFTGPTNIFENPPPPQIETTTNNITFPQSVTSFCSDNLTFNQENSPLSFAPLKPNDFIDLDKLMINFNPIPTSAPTSMPKINTTTTSSPATTTYTIPPPLTTTIPTHITNINTSVHIINTPTITIPTTPPTITPIITATVITPTTTTPIISATSTTLINTSVHETNQYPANYNFPIPAGQQQIQQNINNQVSVPKHVACIDITATHFDRASNHPSVIASTTTTPIISAKSTTMTNTSVHETNQYPTNYNFPMHAGQKQIQQNINNQVSVPKHVACIDITTTHFERAYNHPSVALCGSRKRKHNNQMALVCYMRDDELPKDPWAWRKYGQKPIKGSPHPRSYYKCSTWSDCPARKKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSLETGLHSAEETGSSTNITNPGSPSMVMLQIDHPESSNTQVLADQSKILYPEIELLESHLPSVEEVGSSLNARNLGSHNKMIMQFDEPQSSNVTGVVDDSNLPYSETGFIGSFDDNDDILIPNITAWSEDYLMDFKCLNGGAIFP