Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047482.t1 | KEH36934.1 | 56.9 | 304 | 36 | 1 | 2 | 210 | 166 | 469 | 5.60E-82 | 313.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047482.t1 | Q9FLX8 | 39.3 | 117 | 61 | 3 | 64 | 173 | 143 | 256 | 2.3e-15 | 84.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047482.t1 | A0A072V4M0 | 56.9 | 304 | 36 | 1 | 2 | 210 | 166 | 469 | 4.0e-82 | 313.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene047482.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047482.t1 | MTR_2g024380 | 53.115 | 305 | 48 | 3 | 1 | 210 | 165 | 469 | 1.12e-98 | 294 |
MS.gene047482.t1 | MTR_2g024350 | 43.363 | 226 | 33 | 3 | 80 | 210 | 1 | 226 | 1.41e-50 | 164 |
MS.gene047482.t1 | MTR_8g069935 | 40.964 | 249 | 97 | 6 | 6 | 210 | 220 | 462 | 5.63e-49 | 166 |
MS.gene047482.t1 | MTR_8g067635 | 33.224 | 304 | 107 | 5 | 1 | 210 | 234 | 535 | 2.12e-38 | 139 |
MS.gene047482.t1 | MTR_8g067650 | 34.459 | 296 | 104 | 8 | 3 | 210 | 226 | 519 | 4.56e-38 | 138 |
MS.gene047482.t1 | MTR_6g053200 | 30.693 | 303 | 113 | 6 | 5 | 210 | 233 | 535 | 3.14e-32 | 122 |
MS.gene047482.t1 | MTR_7g105000 | 42.537 | 134 | 48 | 2 | 2 | 107 | 208 | 340 | 3.21e-22 | 92.8 |
MS.gene047482.t1 | MTR_1g099600 | 60.000 | 60 | 23 | 1 | 64 | 123 | 163 | 221 | 2.01e-19 | 84.7 |
MS.gene047482.t1 | MTR_7g079040 | 49.275 | 69 | 35 | 0 | 55 | 123 | 122 | 190 | 1.13e-17 | 80.1 |
MS.gene047482.t1 | MTR_8g028565 | 55.738 | 61 | 23 | 1 | 63 | 123 | 135 | 191 | 1.37e-16 | 77.0 |
MS.gene047482.t1 | MTR_2g016770 | 50.746 | 67 | 29 | 1 | 61 | 123 | 5 | 71 | 4.18e-16 | 74.3 |
MS.gene047482.t1 | MTR_2g016770 | 71.053 | 38 | 11 | 0 | 88 | 125 | 28 | 65 | 2.40e-15 | 72.0 |
MS.gene047482.t1 | MTR_5g016610 | 42.308 | 78 | 38 | 1 | 80 | 150 | 192 | 269 | 3.68e-15 | 72.4 |
MS.gene047482.t1 | MTR_8g087000 | 71.053 | 38 | 11 | 0 | 88 | 125 | 78 | 115 | 4.61e-15 | 72.0 |
MS.gene047482.t1 | MTR_8g087000 | 71.053 | 38 | 11 | 0 | 88 | 125 | 77 | 114 | 5.35e-15 | 71.6 |
MS.gene047482.t1 | MTR_2g083870 | 44.000 | 75 | 33 | 1 | 60 | 125 | 44 | 118 | 9.82e-15 | 71.2 |
MS.gene047482.t1 | MTR_7g109600 | 46.970 | 66 | 28 | 1 | 65 | 123 | 24 | 89 | 1.68e-14 | 70.5 |
MS.gene047482.t1 | MTR_4g094908 | 46.053 | 76 | 33 | 2 | 80 | 152 | 259 | 329 | 1.74e-14 | 71.2 |
MS.gene047482.t1 | MTR_1g070455 | 66.667 | 39 | 13 | 0 | 84 | 122 | 290 | 328 | 2.21e-14 | 71.2 |
MS.gene047482.t1 | MTR_1g009613 | 66.667 | 39 | 13 | 0 | 84 | 122 | 259 | 297 | 4.63e-14 | 70.1 |
MS.gene047482.t1 | MTR_8g098945 | 33.871 | 124 | 77 | 2 | 2 | 125 | 49 | 167 | 8.43e-14 | 68.9 |
MS.gene047482.t1 | MTR_2g032030 | 44.156 | 77 | 30 | 2 | 60 | 123 | 227 | 303 | 1.06e-13 | 69.3 |
MS.gene047482.t1 | MTR_2g032030 | 44.156 | 77 | 30 | 2 | 60 | 123 | 227 | 303 | 1.14e-13 | 69.3 |
MS.gene047482.t1 | MTR_3g108960 | 40.541 | 74 | 38 | 2 | 66 | 138 | 292 | 360 | 1.80e-13 | 68.6 |
MS.gene047482.t1 | MTR_4g127040 | 64.103 | 39 | 14 | 0 | 84 | 122 | 242 | 280 | 3.58e-13 | 67.4 |
MS.gene047482.t1 | MTR_7g104980 | 50.000 | 88 | 43 | 1 | 123 | 210 | 128 | 214 | 4.24e-13 | 65.9 |
MS.gene047482.t1 | MTR_0117s0040 | 46.552 | 58 | 26 | 1 | 81 | 138 | 68 | 120 | 8.85e-13 | 65.5 |
MS.gene047482.t1 | MTR_5g097490 | 47.059 | 68 | 32 | 2 | 83 | 150 | 88 | 151 | 2.89e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047482.t1 | AT5G52830 | 58.333 | 60 | 24 | 1 | 64 | 123 | 143 | 201 | 4.65e-18 | 81.6 |
MS.gene047482.t1 | AT4G01250 | 54.237 | 59 | 27 | 0 | 65 | 123 | 106 | 164 | 4.27e-17 | 78.2 |
MS.gene047482.t1 | AT5G45050 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1009 | 1087 | 1.85e-16 | 77.8 |
MS.gene047482.t1 | AT5G45050 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1120 | 1198 | 1.96e-16 | 77.8 |
MS.gene047482.t1 | AT5G45050 | 45.882 | 85 | 40 | 2 | 54 | 138 | 1148 | 1226 | 1.98e-16 | 77.8 |
MS.gene047482.t1 | AT4G23550 | 58.491 | 53 | 22 | 0 | 71 | 123 | 124 | 176 | 3.07e-16 | 75.9 |
MS.gene047482.t1 | AT1G29280 | 48.571 | 70 | 27 | 1 | 63 | 123 | 41 | 110 | 1.58e-15 | 73.6 |
MS.gene047482.t1 | AT4G31550 | 69.231 | 39 | 12 | 0 | 84 | 122 | 243 | 281 | 8.40e-15 | 72.0 |
MS.gene047482.t1 | AT4G31550 | 69.231 | 39 | 12 | 0 | 84 | 122 | 242 | 280 | 8.68e-15 | 72.0 |
MS.gene047482.t1 | AT2G24570 | 69.231 | 39 | 12 | 0 | 84 | 122 | 240 | 278 | 1.06e-14 | 71.6 |
MS.gene047482.t1 | AT3G58710 | 75.000 | 36 | 9 | 0 | 88 | 123 | 71 | 106 | 1.98e-14 | 70.5 |
MS.gene047482.t1 | AT3G58710 | 75.000 | 36 | 9 | 0 | 88 | 123 | 72 | 107 | 1.98e-14 | 70.5 |
MS.gene047482.t1 | AT2G23320 | 51.562 | 64 | 23 | 2 | 88 | 148 | 241 | 299 | 2.30e-14 | 70.9 |
MS.gene047482.t1 | AT4G24240 | 66.667 | 39 | 13 | 0 | 84 | 122 | 278 | 316 | 3.40e-14 | 70.5 |
MS.gene047482.t1 | AT5G28650 | 53.968 | 63 | 27 | 2 | 84 | 146 | 259 | 319 | 3.56e-14 | 70.5 |
MS.gene047482.t1 | AT3G04670 | 66.667 | 39 | 13 | 0 | 84 | 122 | 259 | 297 | 4.96e-14 | 70.1 |
MS.gene047482.t1 | AT2G30590 | 47.541 | 61 | 29 | 1 | 65 | 122 | 288 | 348 | 1.68e-13 | 68.6 |
MS.gene047482.t1 | AT2G34830 | 69.444 | 36 | 11 | 0 | 88 | 123 | 225 | 260 | 1.39e-12 | 66.2 |
MS.gene047482.t1 | AT2G34830 | 69.444 | 36 | 11 | 0 | 88 | 123 | 216 | 251 | 1.41e-12 | 66.2 |
MS.gene047482.t1 | AT1G30650 | 64.103 | 39 | 14 | 0 | 85 | 123 | 215 | 253 | 5.06e-12 | 64.7 |
MS.gene047482.t1 | AT2G38470 | 45.333 | 75 | 36 | 3 | 71 | 145 | 169 | 238 | 4.14e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATGTGGAGACCCTTTAA+TGG | 0.287579 | 2.4:+63234532 | None:intergenic |
ATAAATCCAGTTTCAGAATA+AGG | 0.301581 | 2.4:+63233649 | None:intergenic |
TATGGACAGAAACCCATTAA+AGG | 0.302088 | 2.4:-63234545 | MS.gene047482:CDS |
TTCACATAACAACAAGATTA+TGG | 0.327717 | 2.4:-63233728 | MS.gene047482:CDS |
AACTTGCCTTATTCTGAAAC+TGG | 0.331215 | 2.4:-63233655 | MS.gene047482:CDS |
ATCAATGCATGCAACAGGTT+TGG | 0.338091 | 2.4:+63234846 | None:intergenic |
TTGGTTAGATGATTACTTAA+TGG | 0.339688 | 2.4:-63233578 | MS.gene047482:CDS |
CACTAAGCAAATCGAGAAAA+AGG | 0.340079 | 2.4:-63234777 | MS.gene047482:intron |
TCGTGGGCATGGAGGAAATA+TGG | 0.346010 | 2.4:-63234563 | MS.gene047482:CDS |
GAGTGTTAGGAAATTAAAAT+TGG | 0.348469 | 2.4:+63234918 | None:intergenic |
TCAATGCATGCAACAGGTTT+GGG | 0.360204 | 2.4:+63234847 | None:intergenic |
GTTGTTGTTCCGCGAGTGTT+AGG | 0.379748 | 2.4:+63234905 | None:intergenic |
GGATGTGGAGACCCTTTAAT+GGG | 0.385486 | 2.4:+63234533 | None:intergenic |
ATCCACAAATGTTAGAAACT+TGG | 0.408052 | 2.4:-63233752 | MS.gene047482:CDS |
GTGATATCAATGCATGCAAC+AGG | 0.433021 | 2.4:+63234841 | None:intergenic |
GACCCAGCTTCTTCGACAAC+GGG | 0.441727 | 2.4:+63233775 | None:intergenic |
ACCCAAGTTTCTAACATTTG+TGG | 0.449992 | 2.4:+63233750 | None:intergenic |
ATGGACAGAAACCCATTAAA+GGG | 0.461015 | 2.4:-63234544 | MS.gene047482:CDS |
TATAGCACACCAATGCCGTT+TGG | 0.476487 | 2.4:+63234612 | None:intergenic |
TCCACAAATGTTAGAAACTT+GGG | 0.479230 | 2.4:-63233751 | MS.gene047482:CDS |
TTACCCGTTGTCGAAGAAGC+TGG | 0.488577 | 2.4:-63233778 | MS.gene047482:CDS |
GTTAGGAAATTAAAATTGGT+GGG | 0.494516 | 2.4:+63234922 | None:intergenic |
AGCAATGCTCAAGTTGTTGT+CGG | 0.499521 | 2.4:-63233685 | MS.gene047482:CDS |
ATGGACTTCAACCGCCTCAA+TGG | 0.514519 | 2.4:-63233559 | MS.gene047482:CDS |
ACATAATAACCAAACGGCAT+TGG | 0.525701 | 2.4:-63234621 | MS.gene047482:CDS |
TGTTAGGAAATTAAAATTGG+TGG | 0.530065 | 2.4:+63234921 | None:intergenic |
TGATAACAAACATAACAGCT+TGG | 0.533538 | 2.4:-63233597 | MS.gene047482:CDS |
CAGAAAACATAATAACCAAA+CGG | 0.550138 | 2.4:-63234627 | MS.gene047482:CDS |
AGATTGTCCAGCAAGAAGAA+AGG | 0.551728 | 2.4:-63234032 | MS.gene047482:intron |
TACCCGTTGTCGAAGAAGCT+GGG | 0.554513 | 2.4:-63233777 | MS.gene047482:CDS |
TGACCCAGCTTCTTCGACAA+CGG | 0.566165 | 2.4:+63233774 | None:intergenic |
TTTCAAAAGACTCGTGGGCA+TGG | 0.568404 | 2.4:-63234574 | MS.gene047482:CDS |
CTATTACAAATGTAGCACTT+TGG | 0.573456 | 2.4:-63234056 | MS.gene047482:CDS |
TTAGGAAATTAAAATTGGTG+GGG | 0.575907 | 2.4:+63234923 | None:intergenic |
GACTTCAACCGCCTCAATGG+TGG | 0.595091 | 2.4:-63233556 | MS.gene047482:CDS |
AGAATAGAGCACCACCATTG+AGG | 0.605565 | 2.4:+63233545 | None:intergenic |
GATTTGCTTAGTGCAACTGA+TGG | 0.610064 | 2.4:+63234787 | None:intergenic |
ATGAACACTAGTGTTTGTCA+TGG | 0.612356 | 2.4:+63234960 | None:intergenic |
ATGTGTGTGAACCTTGGATG+TGG | 0.613865 | 2.4:+63234518 | None:intergenic |
TTAAAGGGTCTCCACATCCA+AGG | 0.615060 | 2.4:-63234529 | MS.gene047482:intron |
TGAGCTTTCAAAAGACTCGT+GGG | 0.628685 | 2.4:-63234579 | MS.gene047482:CDS |
ATGAGCTTTCAAAAGACTCG+TGG | 0.638619 | 2.4:-63234580 | MS.gene047482:CDS |
CAAAAGACTCGTGGGCATGG+AGG | 0.669284 | 2.4:-63234571 | MS.gene047482:CDS |
ATAGAGCACCACCATTGAGG+CGG | 0.679111 | 2.4:+63233548 | None:intergenic |
ACTTGAGCATTGCTACTCTG+TGG | 0.710623 | 2.4:+63233694 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAATATATAAAATAAT+AGG | + | chr2.4:63233760-63233779 | None:intergenic | 0.0% |
!! | CTTAAAAAAGTTATTTATTA+GGG | + | chr2.4:63234325-63234344 | None:intergenic | 10.0% |
!! | TTAAAAAAGTTATTTATTAG+GGG | + | chr2.4:63234324-63234343 | None:intergenic | 10.0% |
!! | GCTTAAAAAAGTTATTTATT+AGG | + | chr2.4:63234326-63234345 | None:intergenic | 15.0% |
!! | TTCTAATTAAATTCAACATA+TGG | - | chr2.4:63234140-63234159 | MS.gene047482:intron | 15.0% |
!! | TTTAATAAGAATGTTGTTAT+TGG | - | chr2.4:63234563-63234582 | MS.gene047482:CDS | 15.0% |
!! | ACAACATTCTTATTAAATGT+TGG | + | chr2.4:63234560-63234579 | None:intergenic | 20.0% |
!! | ACTTATATTGTGATATATGA+AGG | - | chr2.4:63234515-63234534 | MS.gene047482:intron | 20.0% |
!! | TAAAGGAAGTAATAACATAT+TGG | + | chr2.4:63234278-63234297 | None:intergenic | 20.0% |
!! | TAGAATTATATGCAATGAAT+AGG | + | chr2.4:63234125-63234144 | None:intergenic | 20.0% |
! | AACATATGGTATCTTAATCA+CGG | - | chr2.4:63234154-63234173 | MS.gene047482:intron | 25.0% |
! | ATAAATCCAGTTTCAGAATA+AGG | + | chr2.4:63234852-63234871 | None:intergenic | 25.0% |
! | CAGAAAACATAATAACCAAA+CGG | - | chr2.4:63233871-63233890 | MS.gene047482:intron | 25.0% |
! | GAAAAATATGGTACACTTAA+AGG | + | chr2.4:63234295-63234314 | None:intergenic | 25.0% |
! | GAGTGTTAGGAAATTAAAAT+TGG | + | chr2.4:63233583-63233602 | None:intergenic | 25.0% |
! | GTTAGGAAATTAAAATTGGT+GGG | + | chr2.4:63233579-63233598 | None:intergenic | 25.0% |
! | TATTCTTACGTAACTTAACT+CGG | - | chr2.4:63233815-63233834 | MS.gene047482:intron | 25.0% |
! | TGTTAGGAAATTAAAATTGG+TGG | + | chr2.4:63233580-63233599 | None:intergenic | 25.0% |
! | TTAGGAAATTAAAATTGGTG+GGG | + | chr2.4:63233578-63233597 | None:intergenic | 25.0% |
! | TTCACATAACAACAAGATTA+TGG | - | chr2.4:63234770-63234789 | MS.gene047482:intron | 25.0% |
! | TTGGTTAGATGATTACTTAA+TGG | - | chr2.4:63234920-63234939 | MS.gene047482:CDS | 25.0% |
!! | AAATTTGTTTATGCTGAAAC+TGG | - | chr2.4:63234373-63234392 | MS.gene047482:intron | 25.0% |
!! | AATCAATGTTTAAAACTCGA+GGG | + | chr2.4:63234088-63234107 | None:intergenic | 25.0% |
!! | TGTTTTCTGTAAGAAAAGAA+AGG | + | chr2.4:63233860-63233879 | None:intergenic | 25.0% |
!!! | GAGTTTTAAACATTGATTGT+AGG | - | chr2.4:63234090-63234109 | MS.gene047482:intron | 25.0% |
ATCCACAAATGTTAGAAACT+TGG | - | chr2.4:63234746-63234765 | MS.gene047482:intron | 30.0% | |
CTATTACAAATGTAGCACTT+TGG | - | chr2.4:63234442-63234461 | MS.gene047482:intron | 30.0% | |
CTCTATAATAGTTCCATTTC+CGG | + | chr2.4:63234696-63234715 | None:intergenic | 30.0% | |
GTATGCATGATAAAAATGAG+CGG | + | chr2.4:63233685-63233704 | None:intergenic | 30.0% | |
TAGGGGCTTAAAGAAAAATA+TGG | + | chr2.4:63234307-63234326 | None:intergenic | 30.0% | |
TCCACAAATGTTAGAAACTT+GGG | - | chr2.4:63234747-63234766 | MS.gene047482:intron | 30.0% | |
TCTTTAATAAATGATGCTGC+AGG | - | chr2.4:63234417-63234436 | MS.gene047482:intron | 30.0% | |
TGATAACAAACATAACAGCT+TGG | - | chr2.4:63234901-63234920 | MS.gene047482:CDS | 30.0% | |
! | AAACATTGATTGTAGGCATT+GGG | - | chr2.4:63234097-63234116 | MS.gene047482:intron | 30.0% |
! | AAATTTAGGTTTGCCTAATG+TGG | - | chr2.4:63234599-63234618 | MS.gene047482:CDS | 30.0% |
! | CAATCAATGTTTAAAACTCG+AGG | + | chr2.4:63234089-63234108 | None:intergenic | 30.0% |
! | TAAACATTGATTGTAGGCAT+TGG | - | chr2.4:63234096-63234115 | MS.gene047482:intron | 30.0% |
! | TCAGCATAAACAAATTTTGC+AGG | + | chr2.4:63234370-63234389 | None:intergenic | 30.0% |
!!! | TTTTAATTTCCTAACACTCG+CGG | - | chr2.4:63233584-63233603 | MS.gene047482:CDS | 30.0% |
AACTACAACATCACCACATT+AGG | + | chr2.4:63234615-63234634 | None:intergenic | 35.0% | |
AATAGTTCCATTTCCGGATA+AGG | + | chr2.4:63234690-63234709 | None:intergenic | 35.0% | |
ACATAATAACCAAACGGCAT+TGG | - | chr2.4:63233877-63233896 | MS.gene047482:intron | 35.0% | |
ACCCAAGTTTCTAACATTTG+TGG | + | chr2.4:63234751-63234770 | None:intergenic | 35.0% | |
AGGCAAACCTAAATTTGTGA+TGG | + | chr2.4:63234595-63234614 | None:intergenic | 35.0% | |
ATAGTTCCATTTCCGGATAA+GGG | + | chr2.4:63234689-63234708 | None:intergenic | 35.0% | |
ATGGACAGAAACCCATTAAA+GGG | - | chr2.4:63233954-63233973 | MS.gene047482:intron | 35.0% | |
CACTAAGCAAATCGAGAAAA+AGG | - | chr2.4:63233721-63233740 | MS.gene047482:CDS | 35.0% | |
GATGTTGTAGTTTGATCATC+CGG | - | chr2.4:63234623-63234642 | MS.gene047482:CDS | 35.0% | |
GGCAAACCTAAATTTGTGAT+GGG | + | chr2.4:63234594-63234613 | None:intergenic | 35.0% | |
TATGGACAGAAACCCATTAA+AGG | - | chr2.4:63233953-63233972 | MS.gene047482:intron | 35.0% | |
TCAATCAAACATCCCTTATC+CGG | - | chr2.4:63234674-63234693 | MS.gene047482:intron | 35.0% | |
TGATTGATCAACGAGAACAT+GGG | + | chr2.4:63234661-63234680 | None:intergenic | 35.0% | |
TTGATTGATCAACGAGAACA+TGG | + | chr2.4:63234662-63234681 | None:intergenic | 35.0% | |
TTTAAATGTGCAGCTCATTG+TGG | + | chr2.4:63234230-63234249 | None:intergenic | 35.0% | |
! | AAACCTAAATTTGTGATGGG+AGG | + | chr2.4:63234591-63234610 | None:intergenic | 35.0% |
! | TTTTCTACCTTTCTTCTTGC+TGG | + | chr2.4:63234476-63234495 | None:intergenic | 35.0% |
! | TTTTGAATGTGTGTGAACCT+TGG | + | chr2.4:63233989-63234008 | None:intergenic | 35.0% |
!! | AACTTGCCTTATTCTGAAAC+TGG | - | chr2.4:63234843-63234862 | MS.gene047482:CDS | 35.0% |
AAACATCCCTTATCCGGAAA+TGG | - | chr2.4:63234680-63234699 | MS.gene047482:intron | 40.0% | |
AGATTGTCCAGCAAGAAGAA+AGG | - | chr2.4:63234466-63234485 | MS.gene047482:intron | 40.0% | |
ATCAATGCATGCAACAGGTT+TGG | + | chr2.4:63233655-63233674 | None:intergenic | 40.0% | |
ATGAGCTTTCAAAAGACTCG+TGG | - | chr2.4:63233918-63233937 | MS.gene047482:intron | 40.0% | |
GCTCATTGTGGATAATTGAG+TGG | + | chr2.4:63234218-63234237 | None:intergenic | 40.0% | |
GTACCTCCCATCACAAATTT+AGG | - | chr2.4:63234585-63234604 | MS.gene047482:CDS | 40.0% | |
GTGATATCAATGCATGCAAC+AGG | + | chr2.4:63233660-63233679 | None:intergenic | 40.0% | |
TCAATGCATGCAACAGGTTT+GGG | + | chr2.4:63233654-63233673 | None:intergenic | 40.0% | |
TGAGCTTTCAAAAGACTCGT+GGG | - | chr2.4:63233919-63233938 | MS.gene047482:intron | 40.0% | |
! | AGCAATGCTCAAGTTGTTGT+CGG | - | chr2.4:63234813-63234832 | MS.gene047482:CDS | 40.0% |
! | ATGTTTAAAACTCGAGGGTG+CGG | + | chr2.4:63234083-63234102 | None:intergenic | 40.0% |
! | GATTTGCTTAGTGCAACTGA+TGG | + | chr2.4:63233714-63233733 | None:intergenic | 40.0% |
ATGTGTGTGAACCTTGGATG+TGG | + | chr2.4:63233983-63234002 | None:intergenic | 45.0% | |
GGATGTGGAGACCCTTTAAT+GGG | + | chr2.4:63233968-63233987 | None:intergenic | 45.0% | |
TATAGCACACCAATGCCGTT+TGG | + | chr2.4:63233889-63233908 | None:intergenic | 45.0% | |
TGGATGTGGAGACCCTTTAA+TGG | + | chr2.4:63233969-63233988 | None:intergenic | 45.0% | |
TTAAAGGGTCTCCACATCCA+AGG | - | chr2.4:63233969-63233988 | MS.gene047482:intron | 45.0% | |
TTTCAAAAGACTCGTGGGCA+TGG | - | chr2.4:63233924-63233943 | MS.gene047482:intron | 45.0% | |
! | ACTTGAGCATTGCTACTCTG+TGG | + | chr2.4:63234807-63234826 | None:intergenic | 45.0% |
! | AGAATAGAGCACCACCATTG+AGG | + | chr2.4:63234956-63234975 | None:intergenic | 45.0% |
!! | AGGGTGCGGTTGTTTGTTTT+AGG | + | chr2.4:63234069-63234088 | None:intergenic | 45.0% |
!! | AAATAATATCAATTTATTAT+TGG | - | chr2.4:63234250-63234269 | MS.gene047482:intron | 5.0% |
ATGGACTTCAACCGCCTCAA+TGG | - | chr2.4:63234939-63234958 | MS.gene047482:CDS | 50.0% | |
TACCCGTTGTCGAAGAAGCT+GGG | - | chr2.4:63234721-63234740 | MS.gene047482:intron | 50.0% | |
TCGTGGGCATGGAGGAAATA+TGG | - | chr2.4:63233935-63233954 | MS.gene047482:intron | 50.0% | |
TGACCCAGCTTCTTCGACAA+CGG | + | chr2.4:63234727-63234746 | None:intergenic | 50.0% | |
TTACCCGTTGTCGAAGAAGC+TGG | - | chr2.4:63234720-63234739 | MS.gene047482:intron | 50.0% | |
! | ATAGAGCACCACCATTGAGG+CGG | + | chr2.4:63234953-63234972 | None:intergenic | 50.0% |
! | GTTGTTGTTCCGCGAGTGTT+AGG | + | chr2.4:63233596-63233615 | None:intergenic | 50.0% |
CAAAAGACTCGTGGGCATGG+AGG | - | chr2.4:63233927-63233946 | MS.gene047482:intron | 55.0% | |
GACCCAGCTTCTTCGACAAC+GGG | + | chr2.4:63234726-63234745 | None:intergenic | 55.0% | |
GACTTCAACCGCCTCAATGG+TGG | - | chr2.4:63234942-63234961 | MS.gene047482:CDS | 55.0% | |
! | ACATGGGCATTGCTGCTCTC+CGG | + | chr2.4:63234645-63234664 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 63233540 | 63234980 | 63233540 | ID=MS.gene047482 |
chr2.4 | mRNA | 63233540 | 63234980 | 63233540 | ID=MS.gene047482.t1;Parent=MS.gene047482 |
chr2.4 | exon | 63234778 | 63234980 | 63234778 | ID=MS.gene047482.t1.exon1;Parent=MS.gene047482.t1 |
chr2.4 | CDS | 63234778 | 63234980 | 63234778 | ID=cds.MS.gene047482.t1;Parent=MS.gene047482.t1 |
chr2.4 | exon | 63234530 | 63234646 | 63234530 | ID=MS.gene047482.t1.exon2;Parent=MS.gene047482.t1 |
chr2.4 | CDS | 63234530 | 63234646 | 63234530 | ID=cds.MS.gene047482.t1;Parent=MS.gene047482.t1 |
chr2.4 | exon | 63234033 | 63234081 | 63234033 | ID=MS.gene047482.t1.exon3;Parent=MS.gene047482.t1 |
chr2.4 | CDS | 63234033 | 63234081 | 63234033 | ID=cds.MS.gene047482.t1;Parent=MS.gene047482.t1 |
chr2.4 | exon | 63233540 | 63233806 | 63233540 | ID=MS.gene047482.t1.exon4;Parent=MS.gene047482.t1 |
chr2.4 | CDS | 63233540 | 63233806 | 63233540 | ID=cds.MS.gene047482.t1;Parent=MS.gene047482.t1 |
Gene Sequence |
Protein sequence |