AlfalfaGEDB | MS.gene047562

M. sativa cultivar XinJiangDaYe / MS.gene047562

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047562.t1	XP_003593537.1	98.1	370	7	0	1	370	1	370	4.70E-209	736.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047562.t1	Q93YN1	47.8	337	167	4	4	337	2	332	2.4e-89	330.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047562.t1	G7IP26	98.1	370	7	0	1	370	1	370	3.4e-209	736.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047562.t1	MTR_2g013210	98.108	370	7	0	1	370	1	370	0.0	757
MS.gene047562.t1	MTR_4g088975	71.351	370	103	2	1	370	1	367	0.0	536
MS.gene047562.t1	MTR_7g068190	53.529	340	153	1	1	340	1	335	2.21e-128	374
MS.gene047562.t1	MTR_2g064940	50.769	325	157	2	14	337	10	332	6.41e-118	347
MS.gene047562.t1	MTR_8g461260	52.787	305	143	1	34	337	31	335	1.72e-115	341
MS.gene047562.t1	MTR_2g064930	47.941	340	171	3	1	337	1	337	5.79e-112	332
MS.gene047562.t1	MTR_8g463990	47.507	341	176	3	14	351	9	349	3.53e-110	327
MS.gene047562.t1	MTR_8g461110	50.625	320	149	3	6	325	653	963	8.98e-102	323
MS.gene047562.t1	MTR_5g091950	51.057	331	156	4	37	365	530	856	4.03e-99	313
MS.gene047562.t1	MTR_5g091950	51.057	331	156	4	37	365	575	901	9.90e-99	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047562.t1	AT3G09010	56.380	337	143	2	1	336	1	334	3.58e-141	406
MS.gene047562.t1	AT1G16670	47.774	337	167	4	4	337	2	332	8.03e-113	334
MS.gene047562.t1	AT3G09010	56.767	266	112	1	1	266	1	263	5.50e-109	322
MS.gene047562.t1	AT1G56120	52.349	298	139	2	37	334	532	826	7.58e-104	325
MS.gene047562.t1	AT1G56120	52.349	298	139	2	37	334	680	974	1.62e-102	325
MS.gene047562.t1	AT1G56120	52.349	298	139	2	37	334	698	992	1.97e-102	325
MS.gene047562.t1	AT1G56130	48.447	322	158	2	6	327	458	771	8.80e-101	317
MS.gene047562.t1	AT1G56145	51.007	298	143	2	37	334	572	866	1.23e-100	318
MS.gene047562.t1	AT1G56130	48.447	322	158	2	6	327	509	822	3.51e-100	316
MS.gene047562.t1	AT1G56145	51.007	298	143	2	37	334	675	969	6.88e-100	318

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Find 80 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCTGATTATATTCC+TGG	0.336678	2.1:-71510495	MS.gene047562:CDS
AAAGACTTTAATCCGAAAAT+AGG	0.315756	2.1:-71509297	MS.gene047562:CDS
AAAGCAGCTCAAGGACAAAC+TGG	0.379849	2.1:-71509018	MS.gene047562:CDS
AAATGCCTAATATTATCTAA+AGG	0.554112	2.1:+71510272	None:intergenic
AACAAGACCATTATGAGGTG+TGG	0.605404	2.1:-71510555	None:intergenic
AACCTACATACTGCATTACT+TGG	0.487327	2.1:-71509567	MS.gene047562:intron
AACTTCATGAAGACGAGAAA+TGG	0.430934	2.1:-71508808	MS.gene047562:CDS
AAGAAGACCGTTGATGACTC+AGG	0.556653	2.1:-71508690	MS.gene047562:CDS
AAGATAGGAAGGGGAGGCTT+TGG	0.360392	2.1:-71510200	MS.gene047562:CDS
AAGATATGCAAGACCCTTCG+CGG	0.505980	2.1:+71509383	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTCTGATTATATTCC+TGG	-	chr2.1:71508568-71508587	MS.gene047562:CDS	30.0%
AATATACACATACGTTGTTC+CGG	+	chr2.1:71509851-71509870	None:intergenic	30.0%
ACATTCAAACCTTGTTGAAT+TGG	-	chr2.1:71509414-71509433	MS.gene047562:CDS	30.0%
ATTTAGGCAATAAGATAGGA+AGG	-	chr2.1:71508852-71508871	MS.gene047562:intron	30.0%
GAAAGATCAACTATTTGCAT+CGG	-	chr2.1:71509655-71509674	MS.gene047562:CDS	30.0%
GATGATTATGTGTTCTTAAC+AGG	-	chr2.1:71510226-71510245	MS.gene047562:CDS	30.0%
GTCTATGAGTATGTTGAAAA+TGG	-	chr2.1:71509472-71509491	MS.gene047562:intron	30.0%
GTGTGATAAACTAAAGATTC+AGG	+	chr2.1:71510503-71510522	None:intergenic	30.0%
TACTTGATTATCTCTTTCTC+AGG	+	chr2.1:71510314-71510333	None:intergenic	30.0%
TATATTCCTGGTGAAATTGA+AGG	-	chr2.1:71508580-71508599	MS.gene047562:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	71508520	71510565	71508520	ID=MS.gene047562
chr2.1	mRNA	71508520	71510565	71508520	ID=MS.gene047562.t1;Parent=MS.gene047562
chr2.1	exon	71510484	71510565	71510484	ID=MS.gene047562.t1.exon1;Parent=MS.gene047562.t1
chr2.1	CDS	71510484	71510565	71510484	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1
chr2.1	exon	71510187	71510299	71510187	ID=MS.gene047562.t1.exon2;Parent=MS.gene047562.t1
chr2.1	CDS	71510187	71510299	71510187	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1
chr2.1	exon	71509568	71509778	71509568	ID=MS.gene047562.t1.exon3;Parent=MS.gene047562.t1
chr2.1	CDS	71509568	71509778	71509568	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1
chr2.1	exon	71509228	71509465	71509228	ID=MS.gene047562.t1.exon4;Parent=MS.gene047562.t1
chr2.1	CDS	71509228	71509465	71509228	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1
chr2.1	exon	71508988	71509138	71508988	ID=MS.gene047562.t1.exon5;Parent=MS.gene047562.t1
chr2.1	CDS	71508988	71509138	71508988	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1
chr2.1	exon	71508520	71508837	71508520	ID=MS.gene047562.t1.exon6;Parent=MS.gene047562.t1
chr2.1	CDS	71508520	71508837	71508520	ID=cds.MS.gene047562.t1;Parent=MS.gene047562.t1

Gene Sequence

>MS.gene047562

ATGAGGTGTGGCTGCTTTGGAGTATCTAGAACTAGAAAGAAGGAAAGTAAACCTTCTGATTATATTCCTGGTGAAATTGAAGGTGAAATTCTAGTTTTTACTTTTATTTTTCTTCATATTTATGTATTTAATTAAGGCCTTCAACAATTCTACAAAGTTTGTTTAATTTCCTTTAAGTGATTAAACATCTTTGATCAGTTGAGTGGTTAATTGCTTTTAATTAAACTGAAAATTTCTTAACCAACAGTTCCTTTTTTGTTGTGCAGGTTATCCTTTAGATAATATTAGGCATTTTTCTGATAAAGAATTGAGCTTGGCAACTGATAATTATCATTTAGGCAATAAGATAGGAAGGGGAGGCTTTGGAACTGTTTACCAGGTATTTAGGTTACTCATCCTTCAATTTTTGTTGAAGTTTTCTAGTATATAACATTAGGAATGGTTGTCTTAAGCTTATGCAACATTAATATTGTTTTAGCTGTCCAGTTAATTAGTAAAAAAAATTGGAAAAGGTAAATTATTATTAACGGCGACACTAATAACCATCCATACCACTGGGCTGACACTTCATGCACAAAATTTTAAAAGCACCTACCGTGGGGCTCGAACTCACGACCAGCTAAACAGGCTTCTTTTTTTAATATTGACTATTGAGTCTTGACGACATTATGTGCTAGCTTACTTTCGATGACGAAGAGTATATGTTTCCAAAAAATGACATCACAATTTACCATGTTATATGTCTTTTTAATTTACTAAGTAAATATCAATGTGACAATTTTGCTAGGGAACATTAAAAGATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAGGGAGTTCGCGAATTTTTGACTGAAATTAAAACCTTATCAAATGTTAAACATTCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGACCTAATCGTACTGTAGTCTATGAGTATGTTGAAAATGGCAACCTACATACTGCATTACTTGGTAAATTATTTTTTCAACTCAACTGCTTAGTGTGAATTATCATATCACATCATATAAATATCATATCATGCCACATATTAAATTAATTCAATGATTTTGTAGGCAAAAAGAGTTTAAGCGTCAAGATGAAGTGGAGAGAAAGATCAACTATTTGCATCGGTACCGCGAAGGGTCTTGCATATCTTCATGAAGAGCTTGCACAACATATTGTACATAGAGACATCAAAGCTAGCAATGTGCTACTTGACAAAGACTTTAATCCGAAAATAGGTGATTTTGGGATGGCCAAATTATTTCCAGATGATATCACTCACATCAGCACAAGAATTGCCGGAACAACGTATGTGTATATTTAGTTTTGATGTTTATAATTGGACTATAAAAGTGATGGATAATTTACACTGCCTTTGGTTTTCTTTATTTCAACAGTGGTTACTTGGCACCAGAATATGCATTAGGTGGACAGTTAACCAAGAAGGCTGATGTATACAGTTTTGGAGTTCTTATACTTGAAATAATAAGTGGTAAAAGCAGCTCAAGGACAAACTGGGATGGATCACATAAATCCCTTCTAGAATGGGTACACAAATCTCAATTTCCTATATTTATAAGTTTTGCAACATTATACATTTAATGTTTTTTTAGGTCTACAAATGAATATTATTTAAGCCTATGAAATATTATTTATACATCTCCTTATCATATATTGATGATTATGTGTTCTTAACAGGCATGGCAACTTCATGAAGACGAGAAATGGTTGGAGCTAGTAGATCCGGAGATGGAAGAATTTCCTGAGAAAGAGATAATCAAGTACATTAAGGTTGCCCTTTTCTGCACACAAGCTGCAGCAAGAAGAAGACCGTTGATGACTCAGGTTGTGGATATGCTCTCAAAGGAAATTCAGCTCAATGATAAACAACTAACAGCACCAGGATTGTTCAATTATGATGCAGGAGAAACTTCTCAGAAGAAATCAAATCCTGAATCTTTAGTTTATCACACTAGTTCTACTCAGCCTAGTATTACCGAGGTTACAGCTAGGTGA

Protein sequence

>MS.gene047562.t1

MRCGCFGVSRTRKKESKPSDYIPGEIEGYPLDNIRHFSDKELSLATDNYHLGNKIGRGGFGTVYQGTLKDGRKIAVKPLSVGSKQGVREFLTEIKTLSNVKHSNLVELVGFCIQGPNRTVVYEYVENGNLHTALLGKKSLSVKMKWRERSTICIGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSRTNWDGSHKSLLEWAWQLHEDEKWLELVDPEMEEFPEKEIIKYIKVALFCTQAAARRRPLMTQVVDMLSKEIQLNDKQLTAPGLFNYDAGETSQKKSNPESLVYHTSSTQPSITEVTAR