AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047570.t1 MTR_2g013370 89.855 276 25 2 1 275 1 274 1.37e-175 485
MS.gene047570.t1 MTR_4g089095 53.226 310 98 12 1 275 1 298 2.12e-85 257
MS.gene047570.t1 MTR_4g089095 52.852 263 81 10 44 275 14 264 1.00e-72 224
MS.gene047570.t1 MTR_2g096740 48.092 131 56 5 46 175 62 181 6.53e-29 111
MS.gene047570.t1 MTR_2g096740 48.092 131 56 5 46 175 77 196 7.71e-29 111
MS.gene047570.t1 MTR_4g088580 63.415 82 28 2 48 127 57 138 7.92e-29 113
MS.gene047570.t1 MTR_8g479350 60.241 83 30 2 39 120 63 143 1.11e-28 112
MS.gene047570.t1 MTR_3g091820 66.197 71 23 1 30 99 27 97 1.33e-28 111
MS.gene047570.t1 MTR_4g063780 59.302 86 29 2 45 125 74 158 1.46e-27 108
MS.gene047570.t1 MTR_7g024670 60.920 87 29 2 38 119 69 155 1.51e-27 109
MS.gene047570.t1 MTR_4g022370 54.945 91 33 2 45 127 81 171 1.21e-26 107
MS.gene047570.t1 MTR_8g027295 58.108 74 30 1 28 100 6 79 1.30e-26 105
MS.gene047570.t1 MTR_8g079060 58.904 73 30 0 44 116 27 99 1.37e-26 103
MS.gene047570.t1 MTR_2g093220 77.193 57 12 1 44 99 38 94 1.95e-26 105
MS.gene047570.t1 MTR_2g014170 83.673 49 8 0 45 93 44 92 2.31e-26 105
MS.gene047570.t1 MTR_8g068210 60.870 69 26 1 40 107 26 94 2.41e-26 105
MS.gene047570.t1 MTR_8g015840 60.811 74 22 1 20 93 1 67 5.48e-26 102
MS.gene047570.t1 MTR_1g077600 59.420 69 27 1 32 99 29 97 5.96e-26 103
MS.gene047570.t1 MTR_1g077600 59.420 69 27 1 32 99 29 97 6.44e-26 103
MS.gene047570.t1 MTR_4g461080 77.193 57 12 1 42 97 25 81 1.18e-25 102
MS.gene047570.t1 MTR_3g090430 74.138 58 14 1 45 101 50 107 1.63e-25 103
MS.gene047570.t1 MTR_7g059400 79.245 53 10 1 48 99 78 130 1.80e-25 103
MS.gene047570.t1 MTR_4g109980 80.000 50 10 0 44 93 38 87 4.00e-25 102
MS.gene047570.t1 MTR_2g059540 79.592 49 10 0 45 93 30 78 9.59e-25 98.6
MS.gene047570.t1 MTR_1g056810 74.074 54 13 1 47 99 13 66 4.95e-24 98.6
MS.gene047570.t1 MTR_3g077750 46.789 109 41 4 1 93 1 108 2.83e-23 97.4
MS.gene047570.t1 MTR_5g031440 75.000 48 12 0 46 93 43 90 3.75e-23 97.1
MS.gene047570.t1 MTR_3g435480 75.000 52 12 1 48 98 138 189 8.67e-23 97.4
MS.gene047570.t1 MTR_7g010950 74.074 54 13 1 46 98 135 188 1.09e-22 97.4
MS.gene047570.t1 MTR_4g082060 66.102 59 19 1 46 103 122 180 1.44e-22 96.7
MS.gene047570.t1 MTR_2g014060 78.261 46 10 0 48 93 27 72 2.62e-22 94.7
MS.gene047570.t1 MTR_6g027460 67.241 58 18 1 44 100 94 151 2.73e-22 95.1
MS.gene047570.t1 MTR_6g027450 65.517 58 19 1 44 100 87 144 2.76e-22 94.7
MS.gene047570.t1 MTR_2g016030 62.963 54 20 0 46 99 47 100 6.16e-22 89.7
MS.gene047570.t1 MTR_7g086780 67.857 56 17 1 46 100 99 154 6.67e-22 94.7
MS.gene047570.t1 MTR_6g012450 73.077 52 13 1 48 98 138 189 7.25e-22 95.1
MS.gene047570.t1 MTR_5g041420 58.209 67 27 1 33 98 125 191 1.71e-21 92.4
MS.gene047570.t1 MTR_8g044220 66.038 53 17 1 48 99 120 172 5.01e-21 92.4
MS.gene047570.t1 MTR_5g041530 38.843 121 69 2 33 152 127 243 2.70e-20 89.7
MS.gene047570.t1 MTR_5g041400 50.704 71 35 0 48 118 121 191 5.78e-20 88.6
MS.gene047570.t1 MTR_5g041380 47.436 78 41 0 48 125 129 206 5.79e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047570.t1 AT1G28310 65.060 83 28 1 20 101 1 83 3.54e-29 112
MS.gene047570.t1 AT1G28310 65.060 83 28 1 20 101 25 107 6.60e-29 112
MS.gene047570.t1 AT5G60200 56.842 95 35 3 19 112 32 121 8.35e-28 108
MS.gene047570.t1 AT5G66940 65.278 72 24 1 42 113 28 98 2.03e-27 106
MS.gene047570.t1 AT3G55370 66.667 66 21 1 45 109 75 140 2.91e-27 108
MS.gene047570.t1 AT3G55370 66.667 66 21 1 45 109 75 140 3.21e-27 108
MS.gene047570.t1 AT3G55370 66.667 66 21 1 45 109 120 185 3.40e-27 108
MS.gene047570.t1 AT5G60850 58.621 87 32 2 34 116 36 122 4.27e-27 107
MS.gene047570.t1 AT1G51700 60.000 75 26 1 38 108 21 95 4.38e-27 104
MS.gene047570.t1 AT3G45610 48.571 105 48 3 44 144 38 140 1.20e-26 104
MS.gene047570.t1 AT3G61850 75.439 57 13 1 44 99 60 116 2.02e-26 105
MS.gene047570.t1 AT3G61850 75.439 57 13 1 44 99 60 116 2.02e-26 105
MS.gene047570.t1 AT3G61850 75.439 57 13 1 44 99 72 128 2.37e-26 105
MS.gene047570.t1 AT2G28510 77.193 57 12 1 44 99 46 102 2.42e-26 104
MS.gene047570.t1 AT3G61850 75.439 57 13 1 44 99 60 116 3.10e-26 105
MS.gene047570.t1 AT3G61850 75.439 57 13 1 44 99 72 128 3.70e-26 105
MS.gene047570.t1 AT3G50410 64.789 71 18 2 30 99 20 84 4.17e-26 103
MS.gene047570.t1 AT2G37590 61.429 70 24 2 35 101 76 145 1.04e-25 103
MS.gene047570.t1 AT4G24060 73.684 57 14 1 44 99 51 107 1.49e-25 103
MS.gene047570.t1 AT1G07640 70.690 58 15 1 46 101 21 78 3.57e-25 101
MS.gene047570.t1 AT1G64620 57.692 78 31 1 16 93 21 96 3.63e-25 102
MS.gene047570.t1 AT2G28810 77.551 49 11 0 45 93 76 124 3.88e-25 102
MS.gene047570.t1 AT4G38000 50.538 93 40 2 45 137 40 126 4.34e-25 100
MS.gene047570.t1 AT3G21270 79.245 53 10 1 46 97 29 81 4.86e-25 99.4
MS.gene047570.t1 AT2G28810 77.551 49 11 0 45 93 93 141 5.15e-25 102
MS.gene047570.t1 AT1G07640 70.690 58 15 1 46 101 77 134 5.77e-25 102
MS.gene047570.t1 AT4G21050 66.129 62 20 1 48 108 26 87 6.27e-25 99.4
MS.gene047570.t1 AT1G07640 70.690 58 15 1 46 101 85 142 6.55e-25 102
MS.gene047570.t1 AT5G02460 73.214 56 14 1 45 99 94 149 6.76e-25 102
MS.gene047570.t1 AT1G21340 55.128 78 31 2 25 101 20 94 1.62e-24 99.4
MS.gene047570.t1 AT5G65590 61.111 72 24 2 29 99 27 95 1.71e-24 100
MS.gene047570.t1 AT2G46590 74.000 50 13 0 44 93 66 115 4.17e-24 100
MS.gene047570.t1 AT2G46590 74.000 50 13 0 44 93 78 127 4.92e-24 100
MS.gene047570.t1 AT3G52440 67.797 59 18 1 48 105 27 85 1.17e-23 96.7
MS.gene047570.t1 AT3G52440 68.966 58 17 1 48 104 46 103 1.67e-23 96.7
MS.gene047570.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.61e-23 95.9
MS.gene047570.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.61e-23 95.9
MS.gene047570.t1 AT4G00940 67.241 58 18 1 44 100 66 123 6.61e-23 95.9
MS.gene047570.t1 AT3G47500 76.923 52 11 1 48 98 112 163 6.91e-23 97.8
MS.gene047570.t1 AT5G62430 67.742 62 15 2 48 108 56 113 1.25e-22 95.1
MS.gene047570.t1 AT4G21040 64.286 56 20 0 48 103 27 82 1.52e-22 93.6
MS.gene047570.t1 AT1G47655 70.000 50 15 0 44 93 27 76 1.59e-22 92.8
MS.gene047570.t1 AT1G69570 72.222 54 14 1 46 98 132 185 2.04e-22 95.9
MS.gene047570.t1 AT5G62940 78.261 46 10 0 48 93 75 120 3.13e-22 95.1
MS.gene047570.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.39e-22 95.9
MS.gene047570.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.39e-22 95.9
MS.gene047570.t1 AT5G39660 75.000 52 12 1 48 98 140 191 3.39e-22 95.9
MS.gene047570.t1 AT1G26790 73.077 52 13 1 48 98 113 164 4.95e-22 94.4
MS.gene047570.t1 AT2G34140 68.519 54 16 1 46 98 58 111 5.89e-22 90.1
MS.gene047570.t1 AT1G29160 68.519 54 16 1 46 98 62 115 7.62e-22 90.1
MS.gene047570.t1 AT4G21080 60.714 56 22 0 48 103 27 82 1.48e-21 91.3
MS.gene047570.t1 AT4G21030 59.574 47 19 0 48 94 23 69 9.00e-14 68.6

Find 61 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAACTCAAGCTCTTTA+AGG 0.165512 2.1:-71431453 MS.gene047570:CDS
TTGGGAGGATATTGATTCTT+TGG 0.256542 2.1:-71431272 MS.gene047570:CDS
ATTACCTTCTGATTGATCTT+TGG 0.282882 2.1:+71431558 None:intergenic
TTTCTCATGGGAGGAGTCTT+TGG 0.293343 2.1:+71431946 None:intergenic
GAAGGTAATAATGAAGAGTT+TGG 0.377362 2.1:-71431544 MS.gene047570:CDS
ATTCTGCCTGTTGGCATTTG+AGG 0.380271 2.1:+71431660 None:intergenic
TGGTGAAGAGTTTAAAATAA+TGG 0.381474 2.1:-71431410 MS.gene047570:CDS
GGACTAAAGGTGGTACTCTA+AGG 0.389801 2.1:-71431789 MS.gene047570:CDS
TCTTGCAAGCTCTGCAGAAA+TGG 0.390626 2.1:+71431818 None:intergenic
TTTGATCTTGCAACAAGGTT+TGG 0.402739 2.1:+71431980 None:intergenic
AATAATGAAGAGTTTGGTAT+TGG 0.406113 2.1:-71431538 MS.gene047570:CDS
TCCATGCCACTACTTGTTGC+AGG 0.407180 2.1:+71431313 None:intergenic
GGCATTTGAGGTGGTGGTGG+AGG 0.410239 2.1:+71431672 None:intergenic
GTTGGCATTTGAGGTGGTGG+TGG 0.415446 2.1:+71431669 None:intergenic
AAAGAGCTTGAGTTTGAGAA+TGG 0.415643 2.1:+71431457 None:intergenic
TCATCCAATGGATATAACTA+TGG 0.419434 2.1:-71431430 MS.gene047570:CDS
CAACTGATCTAAATGTTCCT+TGG 0.420889 2.1:-71431246 MS.gene047570:CDS
TTTCTAGTAGAGGTGTTGAT+TGG 0.423681 2.1:-71432005 MS.gene047570:CDS
AACTGATCTAAATGTTCCTT+GGG 0.432000 2.1:-71431245 MS.gene047570:CDS
GAGGTGGTGTTAATAGAAGT+TGG 0.432478 2.1:+71431712 None:intergenic
ATGTTCCTGTTGGTGGTGTT+AGG 0.438700 2.1:-71431765 MS.gene047570:CDS
TTCTTCCTAACACCACCAAC+AGG 0.450348 2.1:+71431760 None:intergenic
TTCACCATAGTTATATCCAT+TGG 0.450485 2.1:+71431426 None:intergenic
GCATGGATATGTCAAACTAT+TGG 0.455144 2.1:-71431297 MS.gene047570:CDS
GTATTTGTAGAGTCACATCT+TGG 0.457892 2.1:+71431883 None:intergenic
CTAAGGAATGTTCCTGTTGG+TGG 0.457905 2.1:-71431772 MS.gene047570:CDS
GCAGAGCTTGCAAGAGACAT+TGG 0.471598 2.1:-71431810 MS.gene047570:CDS
CCTGTTGGCATTTGAGGTGG+TGG 0.484699 2.1:+71431666 None:intergenic
AGAATGGGAATAGAAAGCTT+TGG 0.494931 2.1:+71431473 None:intergenic
CCACCACCTCAAATGCCAAC+AGG 0.506248 2.1:-71431666 MS.gene047570:CDS
TGAAGAGTTTGGTATTGGTA+AGG 0.508499 2.1:-71431533 MS.gene047570:CDS
TATGTCAAACTATTGGAGTT+GGG 0.508899 2.1:-71431290 MS.gene047570:CDS
TGCAAGAGACATTGGACTAA+AGG 0.515682 2.1:-71431802 MS.gene047570:CDS
AAGAGCTTGAGTTTGAGAAT+GGG 0.526214 2.1:+71431458 None:intergenic
ATATGTCAAACTATTGGAGT+TGG 0.531877 2.1:-71431291 MS.gene047570:CDS
ATGCCAAGCACTAGTGGTAG+TGG 0.534649 2.1:-71431361 MS.gene047570:CDS
GTGGCACTATTACACATCCA+TGG 0.536686 2.1:-71431342 MS.gene047570:CDS
TTGGTACTCATCAGATTCTG+TGG 0.543797 2.1:+71431577 None:intergenic
TCTAAGCAAGTTTCTAGTAG+AGG 0.557594 2.1:-71432015 MS.gene047570:CDS
GTTATTGTAGTAACAAAACT+TGG 0.560267 2.1:+71431861 None:intergenic
GGTGTTAATAGAAGTTGGAG+AGG 0.561058 2.1:+71431717 None:intergenic
CTGCCTGTTGGCATTTGAGG+TGG 0.562704 2.1:+71431663 None:intergenic
AGAGATTCATGCATAGAAGA+AGG 0.563751 2.1:+71431625 None:intergenic
ACCTGCAACAAGTAGTGGCA+TGG 0.573077 2.1:-71431314 MS.gene047570:CDS
ACTCTAAGGAATGTTCCTGT+TGG 0.580863 2.1:-71431775 MS.gene047570:CDS
GTGCCACTACCACTAGTGCT+TGG 0.582189 2.1:+71431358 None:intergenic
CTTGTTGCAGGTATCTCCCA+TGG 0.587087 2.1:+71431325 None:intergenic
GAGATACCTGCAACAAGTAG+TGG 0.600865 2.1:-71431319 MS.gene047570:CDS
TGAAGAGTTTAAAATAATGG+AGG 0.607082 2.1:-71431407 MS.gene047570:CDS
AGTGCAATGCCAAGCACTAG+TGG 0.615832 2.1:-71431367 MS.gene047570:CDS
AGTACCAAAGATCAATCAGA+AGG 0.617584 2.1:-71431562 MS.gene047570:CDS
AGCTCTTTAAGGTCATCCAA+TGG 0.620244 2.1:-71431442 MS.gene047570:CDS
TTCATGCATAGAAGAAGGTG+TGG 0.623493 2.1:+71431630 None:intergenic
TGGCACTATTACACATCCAT+GGG 0.627148 2.1:-71431341 MS.gene047570:CDS
CAAGCTCTGCAGAAATGGCG+AGG 0.631289 2.1:+71431823 None:intergenic
CTTGTTGCAAGATCAAAACA+TGG 0.647907 2.1:-71431974 MS.gene047570:CDS
GTACTCATCAGATTCTGTGG+TGG 0.648289 2.1:+71431580 None:intergenic
AAGAGACATTGGACTAAAGG+TGG 0.661565 2.1:-71431799 MS.gene047570:CDS
GTCAAACTATTGGAGTTGGG+AGG 0.665707 2.1:-71431287 MS.gene047570:CDS
GCAACAAAATCAGCAACTAG+AGG 0.669254 2.1:-71431917 MS.gene047570:CDS
TTGATATCAGAATCATCCCA+AGG 0.669368 2.1:+71431229 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATAATGAAGAGTTTGGTAT+TGG - chr2.1:71431711-71431730 MS.gene047570:CDS 25.0%
! GTTATTGTAGTAACAAAACT+TGG + chr2.1:71431391-71431410 None:intergenic 25.0%
!! TGAAGAGTTTAAAATAATGG+AGG - chr2.1:71431842-71431861 MS.gene047570:CDS 25.0%
!! TGGTGAAGAGTTTAAAATAA+TGG - chr2.1:71431839-71431858 MS.gene047570:CDS 25.0%
AACTGATCTAAATGTTCCTT+GGG - chr2.1:71432004-71432023 MS.gene047570:CDS 30.0%
ATATGTCAAACTATTGGAGT+TGG - chr2.1:71431958-71431977 MS.gene047570:CDS 30.0%
ATTACCTTCTGATTGATCTT+TGG + chr2.1:71431694-71431713 None:intergenic 30.0%
GAAGGTAATAATGAAGAGTT+TGG - chr2.1:71431705-71431724 MS.gene047570:CDS 30.0%
TATGTCAAACTATTGGAGTT+GGG - chr2.1:71431959-71431978 MS.gene047570:CDS 30.0%
TCATCCAATGGATATAACTA+TGG - chr2.1:71431819-71431838 MS.gene047570:CDS 30.0%
TTCACCATAGTTATATCCAT+TGG + chr2.1:71431826-71431845 None:intergenic 30.0%
!!! AATAGAAAGCTTTGGTTTTG+AGG + chr2.1:71431771-71431790 None:intergenic 30.0%
AAAGAGCTTGAGTTTGAGAA+TGG + chr2.1:71431795-71431814 None:intergenic 35.0%
AAGAGCTTGAGTTTGAGAAT+GGG + chr2.1:71431794-71431813 None:intergenic 35.0%
AGAATGGGAATAGAAAGCTT+TGG + chr2.1:71431779-71431798 None:intergenic 35.0%
AGAGATTCATGCATAGAAGA+AGG + chr2.1:71431627-71431646 None:intergenic 35.0%
AGTACCAAAGATCAATCAGA+AGG - chr2.1:71431687-71431706 MS.gene047570:CDS 35.0%
CAACTGATCTAAATGTTCCT+TGG - chr2.1:71432003-71432022 MS.gene047570:CDS 35.0%
CTTGTTGCAAGATCAAAACA+TGG - chr2.1:71431275-71431294 MS.gene047570:CDS 35.0%
GCATGGATATGTCAAACTAT+TGG - chr2.1:71431952-71431971 MS.gene047570:CDS 35.0%
GTATTTGTAGAGTCACATCT+TGG + chr2.1:71431369-71431388 None:intergenic 35.0%
TCTCAAACTCAAGCTCTTTA+AGG - chr2.1:71431796-71431815 MS.gene047570:CDS 35.0%
TTGATATCAGAATCATCCCA+AGG + chr2.1:71432023-71432042 None:intergenic 35.0%
TTTGATCTTGCAACAAGGTT+TGG + chr2.1:71431272-71431291 None:intergenic 35.0%
! GGTGCTAATAGTAGTTTTTG+AGG + chr2.1:71431559-71431578 None:intergenic 35.0%
!! GCTAATAGTAGTTTTTGAGG+TGG + chr2.1:71431556-71431575 None:intergenic 35.0%
!! TCTAAGCAAGTTTCTAGTAG+AGG - chr2.1:71431234-71431253 MS.gene047570:CDS 35.0%
!! TGAAGAGTTTGGTATTGGTA+AGG - chr2.1:71431716-71431735 MS.gene047570:CDS 35.0%
!! TTGGGAGGATATTGATTCTT+TGG - chr2.1:71431977-71431996 MS.gene047570:CDS 35.0%
!! TTTCTAGTAGAGGTGTTGAT+TGG - chr2.1:71431244-71431263 MS.gene047570:CDS 35.0%
!!! AAGCTTTGGTTTTGAGGAAA+AGG + chr2.1:71431765-71431784 None:intergenic 35.0%
!!! CATGTTTTGATCTTGCAACA+AGG + chr2.1:71431277-71431296 None:intergenic 35.0%
!!! GGTTTTATTATTCTGCCTGT+TGG + chr2.1:71431601-71431620 None:intergenic 35.0%
!!! TGTTGCTGTTGTTTTCTCAT+GGG + chr2.1:71431318-71431337 None:intergenic 35.0%
!!! TTGTTGCTGTTGTTTTCTCA+TGG + chr2.1:71431319-71431338 None:intergenic 35.0%
AAGAGACATTGGACTAAAGG+TGG - chr2.1:71431450-71431469 MS.gene047570:CDS 40.0%
GCAACAAAATCAGCAACTAG+AGG - chr2.1:71431332-71431351 MS.gene047570:CDS 40.0%
GGTGTTAATAGAAGTTGGAG+AGG + chr2.1:71431535-71431554 None:intergenic 40.0%
TGCAAGAGACATTGGACTAA+AGG - chr2.1:71431447-71431466 MS.gene047570:CDS 40.0%
TGGCACTATTACACATCCAT+GGG - chr2.1:71431908-71431927 MS.gene047570:CDS 40.0%
TTCATGCATAGAAGAAGGTG+TGG + chr2.1:71431622-71431641 None:intergenic 40.0%
TTCTGTGGTGGCAAAAAAGA+TGG + chr2.1:71431660-71431679 None:intergenic 40.0%
TTGGTACTCATCAGATTCTG+TGG + chr2.1:71431675-71431694 None:intergenic 40.0%
! ACTCTAAGGAATGTTCCTGT+TGG - chr2.1:71431474-71431493 MS.gene047570:CDS 40.0%
! GAGGTGGTGTTAATAGAAGT+TGG + chr2.1:71431540-71431559 None:intergenic 40.0%
!! AGCTCTTTAAGGTCATCCAA+TGG - chr2.1:71431807-71431826 MS.gene047570:CDS 40.0%
ATTCTGCCTGTTGGCATTTG+AGG + chr2.1:71431592-71431611 None:intergenic 45.0%
CTAAGGAATGTTCCTGTTGG+TGG - chr2.1:71431477-71431496 MS.gene047570:CDS 45.0%
GAGATACCTGCAACAAGTAG+TGG - chr2.1:71431930-71431949 MS.gene047570:CDS 45.0%
GGACTAAAGGTGGTACTCTA+AGG - chr2.1:71431460-71431479 MS.gene047570:CDS 45.0%
GTACTCATCAGATTCTGTGG+TGG + chr2.1:71431672-71431691 None:intergenic 45.0%
GTCAAACTATTGGAGTTGGG+AGG - chr2.1:71431962-71431981 MS.gene047570:CDS 45.0%
GTGGCACTATTACACATCCA+TGG - chr2.1:71431907-71431926 MS.gene047570:CDS 45.0%
TCTTGCAAGCTCTGCAGAAA+TGG + chr2.1:71431434-71431453 None:intergenic 45.0%
TGTGGTGGCAAAAAAGATGG+TGG + chr2.1:71431657-71431676 None:intergenic 45.0%
TTCTTCCTAACACCACCAAC+AGG + chr2.1:71431492-71431511 None:intergenic 45.0%
TTTCTCATGGGAGGAGTCTT+TGG + chr2.1:71431306-71431325 None:intergenic 45.0%
!! ATGTTCCTGTTGGTGGTGTT+AGG - chr2.1:71431484-71431503 MS.gene047570:CDS 45.0%
!!! TGCTGTTGTTTTCTCATGGG+AGG + chr2.1:71431315-71431334 None:intergenic 45.0%
ACCTGCAACAAGTAGTGGCA+TGG - chr2.1:71431935-71431954 MS.gene047570:CDS 50.0%
AGTGCAATGCCAAGCACTAG+TGG - chr2.1:71431882-71431901 MS.gene047570:CDS 50.0%
ATGCCAAGCACTAGTGGTAG+TGG - chr2.1:71431888-71431907 MS.gene047570:CDS 50.0%
CTTGTTGCAGGTATCTCCCA+TGG + chr2.1:71431927-71431946 None:intergenic 50.0%
GCAGAGCTTGCAAGAGACAT+TGG - chr2.1:71431439-71431458 MS.gene047570:CDS 50.0%
! TCCATGCCACTACTTGTTGC+AGG + chr2.1:71431939-71431958 None:intergenic 50.0%
CAAGCTCTGCAGAAATGGCG+AGG + chr2.1:71431429-71431448 None:intergenic 55.0%
CCACCACCTCAAATGCCAAC+AGG - chr2.1:71431583-71431602 MS.gene047570:CDS 55.0%
CTGCCTGTTGGCATTTGAGG+TGG + chr2.1:71431589-71431608 None:intergenic 55.0%
! CCTGTTGGCATTTGAGGTGG+TGG + chr2.1:71431586-71431605 None:intergenic 55.0%
! GTGCCACTACCACTAGTGCT+TGG + chr2.1:71431894-71431913 None:intergenic 55.0%
! GTTGGCATTTGAGGTGGTGG+TGG + chr2.1:71431583-71431602 None:intergenic 55.0%
!! GGCATTTGAGGTGGTGGTGG+AGG + chr2.1:71431580-71431599 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 71431222 71432049 71431222 ID=MS.gene047570
chr2.1 mRNA 71431222 71432049 71431222 ID=MS.gene047570.t1;Parent=MS.gene047570
chr2.1 exon 71431222 71432049 71431222 ID=MS.gene047570.t1.exon1;Parent=MS.gene047570.t1
chr2.1 CDS 71431222 71432049 71431222 ID=cds.MS.gene047570.t1;Parent=MS.gene047570.t1
Gene Sequence

>MS.gene047570

ATGGGCTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACATGGAACTTCCAAAGACTCCTCCCATGAGAAAACAACAGCAACAAAATCAGCAACTAGAGGCAGTGAATTGTCCAAGATGTGACTCTACAAATACCAAGTTTTGTTACTACAATAACTATAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGACATTGGACTAAAGGTGGTACTCTAAGGAATGTTCCTGTTGGTGGTGTTAGGAAGAATAAGAGAGTCAAGATATCAACCTCTCCAACTTCTATTAACACCACCTCAAAAACTACTATTAGCACCTCCACCACCACCTCAAATGCCAACAGGCAGAATAATAAAACCACACCTTCTTCTATGCATGAATCTCTTATTCATCCACCATCTTTTTTGCCACCACAGAATCTGATGAGTACCAAAGATCAATCAGAAGGTAATAATGAAGAGTTTGGTATTGGTAAGGACATGTTTCTGAGTTCATCTATGCCTTTTCCTCAAAACCAAAGCTTTCTATTCCCATTCTCAAACTCAAGCTCTTTAAGGTCATCCAATGGATATAACTATGGTGAAGAGTTTAAAATAATGGAGGAGTCAACTATTAACAACAGTGCAATGCCAAGCACTAGTGGTAGTGGCACTATTACACATCCATGGGAGATACCTGCAACAAGTAGTGGCATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA
Protein sequence

>MS.gene047570.t1

MGLSSKQVSSRGVDWNQTLLQDQNMELPKTPPMRKQQQQNQQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSPTSINTTSKTTISTSTTTSNANRQNNKTTPSSMHESLIHPPSFLPPQNLMSTKDQSEGNNEEFGIGKDMFLSSSMPFPQNQSFLFPFSNSSSLRSSNGYNYGEEFKIMEESTINNSAMPSTSGSGTITHPWEIPATSSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP