AlfalfaGEDB | MS.gene047611

M. sativa cultivar XinJiangDaYe / MS.gene047611

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047611.t1	XP_003611714.1	91	311	27	1	38	347	34	344	1.40E-146	529.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047611.t1	Q9FUA4	52.0	227	80	6	74	296	156	357	3.0e-41	170.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047611.t1	G7K6L5	91.0	311	27	1	38	347	34	344	1.0e-146	529.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene047611.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047611.t1	MTR_5g017040	93.731	335	20	1	14	347	10	344	0.0	597
MS.gene047611.t1	MTR_1g019240	81.319	91	16	1	97	186	73	163	1.07e-41	146
MS.gene047611.t1	MTR_1g084980	57.983	119	49	1	79	197	434	551	2.90e-33	130
MS.gene047611.t1	MTR_7g099540	59.483	116	40	3	72	183	213	325	3.29e-31	122
MS.gene047611.t1	MTR_1g069155	61.682	107	36	3	77	183	289	390	2.51e-29	118
MS.gene047611.t1	MTR_7g099540	56.667	120	43	3	72	183	213	331	3.92e-29	117
MS.gene047611.t1	MTR_3g449770	67.949	78	23	1	109	184	310	387	5.66e-26	108
MS.gene047611.t1	MTR_7g111320	55.140	107	42	1	104	204	428	534	1.71e-23	102
MS.gene047611.t1	MTR_7g110810	54.348	92	37	3	88	178	185	272	6.14e-22	95.9
MS.gene047611.t1	MTR_4g131160	36.429	140	75	2	33	172	135	260	3.98e-19	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047611.t1	AT4G36930	49.776	223	83	6	78	296	160	357	9.25e-47	163
MS.gene047611.t1	AT5G67110	47.753	178	50	4	16	181	14	160	8.41e-36	129
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT1G09530	60.177	113	40	3	82	191	311	421	6.26e-31	122
MS.gene047611.t1	AT2G20180	64.516	93	23	1	80	172	189	271	2.78e-29	117
MS.gene047611.t1	AT2G20180	64.516	93	23	1	80	172	189	271	2.78e-29	117

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Find 71 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCATGAAAGTACAT+AGG	0.590768	5.3:-9409007	None:intergenic
AACAAGTCTTCGCCATGTAT+TGG	0.418377	5.3:-9409380	None:intergenic
AAGAAGATGAAGATGAACGA+AGG	0.614318	5.3:-9407333	None:intergenic
AAGGGGTTGTCTTGTGGATG+AGG	0.470197	5.3:-9409112	None:intergenic
AATCTATTAGGCGGTTCTCA+AGG	0.591562	5.3:+9409440	MS.gene047611:CDS
AATGGAACATAACAACAACA+TGG	0.706557	5.3:+9407246	None:intergenic
AATGTATCTTCCTCTTCTGT+TGG	0.387184	5.3:+9407436	MS.gene047611:CDS
AATGTATTGCATTCAATTGC+TGG	0.398016	5.3:-9409409	None:intergenic
ACAAGTTTGCAAAGTATTGT+TGG	0.445560	5.3:-9409590	None:intergenic
ACAGCTTCAGCTCCAAGTAC+AGG	0.499989	5.3:+9408351	MS.gene047611:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATGTGAAGGATAATTTG+TGG	+	chr5.3:9408757-9408776	MS.gene047611:intron	30.0%
AATGTATTGCATTCAATTGC+TGG	-	chr5.3:9409412-9409431	None:intergenic	30.0%
ACAAATTATCCTTCACATGT+TGG	-	chr5.3:9408758-9408777	None:intergenic	30.0%
AGAGTAGATGTCATGTTTAA+AGG	-	chr5.3:9409091-9409110	None:intergenic	30.0%
AGTTGTCAAAGAATTTCAGT+CGG	+	chr5.3:9409546-9409565	MS.gene047611:intron	30.0%
CCTATGTAAAAAGTGAAAAG+TGG	-	chr5.3:9408461-9408480	None:intergenic	30.0%
CTGCGATGTAAATATAATGT+TGG	-	chr5.3:9409662-9409681	None:intergenic	30.0%
GAGTAGATGTCATGTTTAAA+GGG	-	chr5.3:9409090-9409109	None:intergenic	30.0%
TATTTACATCGCAGTTAAGT+AGG	+	chr5.3:9409668-9409687	MS.gene047611:CDS	30.0%
TGATTTATGAAGCCAATACA+TGG	+	chr5.3:9409368-9409387	MS.gene047611:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	9407247	9409693	9407247	ID=MS.gene047611
chr5.3	mRNA	9407247	9409693	9407247	ID=MS.gene047611.t1;Parent=MS.gene047611
chr5.3	exon	9407247	9407510	9407247	ID=MS.gene047611.t1.exon1;Parent=MS.gene047611.t1
chr5.3	CDS	9407247	9407510	9407247	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9407944	9408051	9407944	ID=MS.gene047611.t1.exon2;Parent=MS.gene047611.t1
chr5.3	CDS	9407944	9408051	9407944	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9408148	9408213	9408148	ID=MS.gene047611.t1.exon3;Parent=MS.gene047611.t1
chr5.3	CDS	9408148	9408213	9408148	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9408307	9408372	9408307	ID=MS.gene047611.t1.exon4;Parent=MS.gene047611.t1
chr5.3	CDS	9408307	9408372	9408307	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9408974	9409285	9408974	ID=MS.gene047611.t1.exon5;Parent=MS.gene047611.t1
chr5.3	CDS	9408974	9409285	9408974	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9409380	9409461	9409380	ID=MS.gene047611.t1.exon6;Parent=MS.gene047611.t1
chr5.3	CDS	9409380	9409461	9409380	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1
chr5.3	exon	9409548	9409693	9409548	ID=MS.gene047611.t1.exon7;Parent=MS.gene047611.t1
chr5.3	CDS	9409548	9409693	9409548	ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1

Gene Sequence

>MS.gene047611

ATGGAACATAACAACAACATGGCTCAGTTTGACAAAAACATGTCCTCTTCACAAGACGAAATCTCTCTTTTTCTTCATCAAATTCTCCTTCGTTCATCTTCATCTTCTTCCATGCAAGGATCCATTAACCAGCTTCAAGATGGAAAGATCTCAGCCTTTGATTCAACTTCTAGACCAAACCATGCTTTAAATGTATCTTCCTCTTCTGTTGGAGCAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGTATTATTCATTACTATTTTCTACTCTTCAAAGTTTCAACCTTTCTTTTTATGTATTCATGTGGGGTAGCTAGTTTCTATATTTTCTTCATAACAAATTATCTTTTGTTAATTTTGTTAGAATACTATCATAAAATAATGACACTGTTTTTATTTTTTTAATTTTTTACTCAATGTCTTGGTAAAGGTTCTTGGTTTTTAATGCAAGCAATAAAACATGGTAATTTATTGTTTGTATGTGTATTTTGGCTATGTCTCTGACTCAAATTGTAAACTGAGATTGTTGTATGTCCTAAAAAGAATAATACTTTGATTCTTGGTCTGTTTCTAGTGTGGATCTTTGTATGCTATTTTGATTTAGATGAATTTGTCGTTTTGTTGTTTTTGTTGGGATTTGATTTTGGGGTTAAAAATTGCATCTTTTAAATTTGCAGGAGGGTGTGGAAGCATTGATTGAAGAAGTTCCAACAAAGTCAGCTGGTGGTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAATTTGTCAGAAAAGGTTTGTCAATTTTTGTTAATTGACGTTTCTTGATTTCAATTTTTATTTGTGGTTATGTAATTTTGCTTGTGGATTTTTGTGGGACTTGTTGAGCAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAAGCTTTACAAAATCTAATTCCAAATTCTAACAAGGTGCATAAAATTTTTAGACCTTAGTTCAAAGGGTGTGTTTTTTTAATTTAGAATTATTCTTTATGTATTGGATTGTTTCCATGTGTGTAACAGACTGATAAAGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGGTTTGTATATCTCTTTTATTTACTGCACTTTTGTCCTATTTTGGGAGGTTGGGAGCTTCATTTCCTAAATTTAAACCCAGCATCTCCACTTTTCACTTTTTACATAGGTCCCTCCCTTACACTCATTTTTACTTTTTACAACACAACCACCCTATTTTCAGCCCATCATCAATACTGTAATCAATATTAAATATCTATGAAGCATTGACACATATGGCAGTGTATTACAAGGCACCGAAACTAATTTGAGAAGATGTCAGTAATTGATTCTAAATACTTCTCTCGGCAGCTGACATTGACACATGTCGGACACCTGACATGTCTTCGATTTGATGTGTTGGTGCTACATAGATTAATATTGATTACAATTGGAGATTTTGTACCAACATGTGAAGGATAATTTGTGGAAATACAACATGAAATGTTTGTCACTTTTCAATTAAGCAAATTGAAATATTGTTGTGTTATTACATAGTATCTTGTTAAATCAAAGTTTATTATGTTTTTTAAAATATAAGAAAATTGGCCTTGTTAGATTGAATTTGCTATCAAAGGTAGCTTAATTCCTGAACTGTATGTGACCTTTATGATGATATTTCAGATGTTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGTTTACATTCTCTGCCTTTGTCTCGGATGAGTTCGGAGTTGAGTGAAGGGAACGGTTCTAACCCTTTAAACATGACATCTACTCTGCCTCATCCACAAGACAACCCCTTGCTCTATCCATCAAATCTACCTAACAAAAACGCATTGTCGAGTCAGCCATCAATGCCTTCCTATCCTTCATATATTAACAACACGGAAACATCTTTCAGAGTGGAATCTGGAATCCCAGCACAGGAAAAACGTCTGCAACGATCTTCAGAGGTAAGCCAATCCTGCAAACTGGAATGTCGTATTTAGTTAAATTTTGAATGCATGATGTTGGTCATTGTTACATGTTTTCTCTTGATTTATGAAGCCAATACATGGCGAAGACTTGTTGCAGCACCAGCAATTGAATGCAATACATTCTTTTACCAATCTATTAGGCGGTTCTCAAGGTGCGCGCATGTTTCTTGTTTTCTAACTCAACGTAACTGTTCCATTCTTATACCACAATCTCACGCTCCTCGTTTCATAACTTCAGTTGTCAAAGAATTTCAGTCGGGCGCAATCGTTACACCTACTACCAACAATACTTTGCAAACTTGTGTCGCCGGAAGAGATCAGTCAGGAGTGGTCATGAGAAATAGTGAGCCCAACATTATATTTACATCGCAGTTAAGTAGGTAA

Protein sequence

>MS.gene047611.t1

MEHNNNMAQFDKNMSSSQDEISLFLHQILLRSSSSSSMQGSINQLQDGKISAFDSTSRPNHALNVSSSSVGAGGLSGNDTDEYDCESEEGVEALIEEVPTKSAGGSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMYFHEGLHSLPLSRMSSELSEGNGSNPLNMTSTLPHPQDNPLLYPSNLPNKNALSSQPSMPSYPSYINNTETSFRVESGIPAQEKRLQRSSEPIHGEDLLQHQQLNAIHSFTNLLGGSQVVKEFQSGAIVTPTTNNTLQTCVAGRDQSGVVMRNSEPNIIFTSQLSR