Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047611.t1 | XP_003611714.1 | 91 | 311 | 27 | 1 | 38 | 347 | 34 | 344 | 1.40E-146 | 529.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047611.t1 | Q9FUA4 | 52.0 | 227 | 80 | 6 | 74 | 296 | 156 | 357 | 3.0e-41 | 170.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047611.t1 | G7K6L5 | 91.0 | 311 | 27 | 1 | 38 | 347 | 34 | 344 | 1.0e-146 | 529.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene047611.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047611.t1 | MTR_5g017040 | 93.731 | 335 | 20 | 1 | 14 | 347 | 10 | 344 | 0.0 | 597 |
MS.gene047611.t1 | MTR_1g019240 | 81.319 | 91 | 16 | 1 | 97 | 186 | 73 | 163 | 1.07e-41 | 146 |
MS.gene047611.t1 | MTR_1g084980 | 57.983 | 119 | 49 | 1 | 79 | 197 | 434 | 551 | 2.90e-33 | 130 |
MS.gene047611.t1 | MTR_7g099540 | 59.483 | 116 | 40 | 3 | 72 | 183 | 213 | 325 | 3.29e-31 | 122 |
MS.gene047611.t1 | MTR_1g069155 | 61.682 | 107 | 36 | 3 | 77 | 183 | 289 | 390 | 2.51e-29 | 118 |
MS.gene047611.t1 | MTR_7g099540 | 56.667 | 120 | 43 | 3 | 72 | 183 | 213 | 331 | 3.92e-29 | 117 |
MS.gene047611.t1 | MTR_3g449770 | 67.949 | 78 | 23 | 1 | 109 | 184 | 310 | 387 | 5.66e-26 | 108 |
MS.gene047611.t1 | MTR_7g111320 | 55.140 | 107 | 42 | 1 | 104 | 204 | 428 | 534 | 1.71e-23 | 102 |
MS.gene047611.t1 | MTR_7g110810 | 54.348 | 92 | 37 | 3 | 88 | 178 | 185 | 272 | 6.14e-22 | 95.9 |
MS.gene047611.t1 | MTR_4g131160 | 36.429 | 140 | 75 | 2 | 33 | 172 | 135 | 260 | 3.98e-19 | 88.2 |
MS.gene047611.t1 | MTR_4g131160 | 36.111 | 144 | 74 | 3 | 29 | 172 | 138 | 263 | 1.07e-18 | 86.7 |
MS.gene047611.t1 | MTR_1g080890 | 53.030 | 66 | 31 | 0 | 107 | 172 | 192 | 257 | 4.26e-17 | 81.6 |
MS.gene047611.t1 | MTR_1g084980 | 48.387 | 93 | 44 | 2 | 79 | 171 | 434 | 522 | 5.94e-16 | 79.3 |
MS.gene047611.t1 | MTR_5g005110 | 44.048 | 84 | 45 | 1 | 101 | 184 | 219 | 300 | 2.02e-15 | 76.6 |
MS.gene047611.t1 | MTR_8g099880 | 33.121 | 157 | 76 | 8 | 95 | 228 | 135 | 285 | 9.82e-15 | 74.3 |
MS.gene047611.t1 | MTR_1g106470 | 37.500 | 80 | 50 | 0 | 105 | 184 | 193 | 272 | 1.52e-13 | 70.5 |
MS.gene047611.t1 | MTR_3g498825 | 41.758 | 91 | 48 | 3 | 94 | 183 | 136 | 222 | 2.96e-13 | 70.1 |
MS.gene047611.t1 | MTR_3g103030 | 36.275 | 102 | 61 | 2 | 85 | 184 | 206 | 305 | 4.00e-13 | 69.7 |
MS.gene047611.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 8.31e-13 | 69.3 |
MS.gene047611.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 8.34e-13 | 69.3 |
MS.gene047611.t1 | MTR_1g106480 | 37.000 | 100 | 51 | 2 | 76 | 172 | 43 | 133 | 1.21e-12 | 65.5 |
MS.gene047611.t1 | MTR_1g018090 | 40.244 | 82 | 47 | 1 | 102 | 183 | 270 | 349 | 1.21e-12 | 68.6 |
MS.gene047611.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.34e-12 | 68.9 |
MS.gene047611.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.37e-12 | 68.9 |
MS.gene047611.t1 | MTR_8g065740 | 49.231 | 65 | 32 | 1 | 110 | 173 | 307 | 371 | 1.56e-12 | 68.6 |
MS.gene047611.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 2.24e-12 | 68.2 |
MS.gene047611.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 2.28e-12 | 68.2 |
MS.gene047611.t1 | MTR_8g062240 | 46.154 | 65 | 34 | 1 | 110 | 173 | 153 | 217 | 2.67e-12 | 66.6 |
MS.gene047611.t1 | MTR_4g070320 | 47.692 | 65 | 33 | 1 | 110 | 173 | 145 | 209 | 3.76e-12 | 67.0 |
MS.gene047611.t1 | MTR_1g106460 | 37.647 | 85 | 53 | 0 | 115 | 199 | 245 | 329 | 3.81e-12 | 67.0 |
MS.gene047611.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.82e-12 | 67.4 |
MS.gene047611.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.92e-12 | 67.4 |
MS.gene047611.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 4.35e-12 | 67.0 |
MS.gene047611.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 4.36e-12 | 67.0 |
MS.gene047611.t1 | MTR_5g037250 | 38.384 | 99 | 58 | 2 | 76 | 173 | 82 | 178 | 6.62e-12 | 65.1 |
MS.gene047611.t1 | MTR_5g048860 | 47.692 | 65 | 33 | 1 | 110 | 173 | 367 | 431 | 1.14e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047611.t1 | AT4G36930 | 49.776 | 223 | 83 | 6 | 78 | 296 | 160 | 357 | 9.25e-47 | 163 |
MS.gene047611.t1 | AT5G67110 | 47.753 | 178 | 50 | 4 | 16 | 181 | 14 | 160 | 8.41e-36 | 129 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 6.26e-31 | 122 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 2.78e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 2.78e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 2.78e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 6.19e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 6.19e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 6.19e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 6.19e-29 | 117 |
MS.gene047611.t1 | AT2G20180 | 64.444 | 90 | 22 | 1 | 80 | 169 | 260 | 339 | 1.16e-27 | 111 |
MS.gene047611.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 62 | 171 | 1.25e-26 | 107 |
MS.gene047611.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 164 | 273 | 3.86e-26 | 107 |
MS.gene047611.t1 | AT4G00050 | 55.340 | 103 | 41 | 2 | 74 | 174 | 174 | 273 | 4.50e-26 | 107 |
MS.gene047611.t1 | AT4G28800 | 44.118 | 136 | 71 | 4 | 48 | 181 | 189 | 321 | 9.62e-24 | 102 |
MS.gene047611.t1 | AT2G46970 | 46.226 | 106 | 53 | 1 | 110 | 215 | 194 | 295 | 7.56e-22 | 95.9 |
MS.gene047611.t1 | AT2G46970 | 46.226 | 106 | 53 | 1 | 110 | 215 | 203 | 304 | 8.31e-22 | 95.9 |
MS.gene047611.t1 | AT2G46970 | 46.226 | 106 | 53 | 1 | 110 | 215 | 225 | 326 | 1.06e-21 | 95.5 |
MS.gene047611.t1 | AT4G28800 | 35.071 | 211 | 119 | 8 | 48 | 243 | 201 | 408 | 1.84e-21 | 95.5 |
MS.gene047611.t1 | AT4G28790 | 50.962 | 104 | 47 | 3 | 80 | 183 | 246 | 345 | 1.24e-20 | 92.4 |
MS.gene047611.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.48e-20 | 92.4 |
MS.gene047611.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.51e-20 | 92.4 |
MS.gene047611.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.51e-20 | 92.4 |
MS.gene047611.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.51e-20 | 92.4 |
MS.gene047611.t1 | AT4G28815 | 52.326 | 86 | 38 | 2 | 100 | 183 | 61 | 145 | 1.72e-20 | 89.4 |
MS.gene047611.t1 | AT4G28815 | 52.326 | 86 | 38 | 2 | 100 | 183 | 137 | 221 | 6.48e-20 | 89.4 |
MS.gene047611.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 37 | 99 | 9.37e-20 | 87.4 |
MS.gene047611.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.25e-19 | 89.7 |
MS.gene047611.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.26e-19 | 89.7 |
MS.gene047611.t1 | AT2G43010 | 65.000 | 80 | 23 | 1 | 96 | 170 | 234 | 313 | 1.33e-19 | 89.4 |
MS.gene047611.t1 | AT2G43010 | 65.000 | 80 | 23 | 1 | 96 | 170 | 276 | 355 | 1.40e-19 | 89.7 |
MS.gene047611.t1 | AT2G43010 | 65.000 | 80 | 23 | 1 | 96 | 170 | 241 | 320 | 1.44e-19 | 89.7 |
MS.gene047611.t1 | AT4G28790 | 54.255 | 94 | 40 | 2 | 80 | 173 | 246 | 336 | 2.06e-19 | 88.2 |
MS.gene047611.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 140 | 202 | 2.86e-19 | 87.8 |
MS.gene047611.t1 | AT5G58010 | 57.576 | 66 | 28 | 0 | 107 | 172 | 98 | 163 | 3.15e-19 | 87.0 |
MS.gene047611.t1 | AT4G30980 | 58.730 | 63 | 26 | 0 | 110 | 172 | 132 | 194 | 7.20e-19 | 86.3 |
MS.gene047611.t1 | AT4G30980 | 37.879 | 132 | 69 | 2 | 41 | 172 | 124 | 242 | 1.32e-18 | 86.3 |
MS.gene047611.t1 | AT5G61270 | 54.321 | 81 | 36 | 1 | 96 | 176 | 61 | 140 | 4.65e-17 | 80.5 |
MS.gene047611.t1 | AT5G61270 | 54.321 | 81 | 36 | 1 | 96 | 176 | 61 | 140 | 4.65e-17 | 80.5 |
MS.gene047611.t1 | AT5G61270 | 54.321 | 81 | 36 | 1 | 96 | 176 | 149 | 228 | 1.03e-16 | 80.9 |
MS.gene047611.t1 | AT5G67110 | 37.079 | 178 | 47 | 5 | 16 | 181 | 14 | 138 | 1.07e-16 | 77.8 |
MS.gene047611.t1 | AT3G62090 | 44.898 | 98 | 44 | 2 | 97 | 187 | 157 | 251 | 3.01e-16 | 79.3 |
MS.gene047611.t1 | AT3G62090 | 44.898 | 98 | 44 | 2 | 97 | 187 | 174 | 268 | 3.59e-16 | 79.0 |
MS.gene047611.t1 | AT4G28811 | 57.471 | 87 | 36 | 1 | 85 | 171 | 329 | 414 | 5.01e-15 | 76.6 |
MS.gene047611.t1 | AT5G67110 | 37.013 | 154 | 54 | 4 | 16 | 157 | 14 | 136 | 6.92e-15 | 71.6 |
MS.gene047611.t1 | AT1G25330 | 35.897 | 117 | 64 | 2 | 110 | 215 | 106 | 222 | 8.52e-15 | 73.2 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 133 | 238 | 4.24e-14 | 72.8 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 162 | 267 | 4.52e-14 | 72.8 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 4.95e-14 | 72.8 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 4.95e-14 | 72.8 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 4.95e-14 | 72.8 |
MS.gene047611.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 4.95e-14 | 72.8 |
MS.gene047611.t1 | AT4G33880 | 40.217 | 92 | 50 | 2 | 96 | 184 | 253 | 342 | 6.95e-14 | 72.4 |
MS.gene047611.t1 | AT1G68920 | 38.983 | 118 | 59 | 4 | 110 | 225 | 304 | 410 | 8.74e-14 | 72.4 |
MS.gene047611.t1 | AT1G68920 | 38.983 | 118 | 59 | 4 | 110 | 225 | 305 | 411 | 9.08e-14 | 72.4 |
MS.gene047611.t1 | AT1G68920 | 38.983 | 118 | 59 | 4 | 110 | 225 | 305 | 411 | 9.08e-14 | 72.4 |
MS.gene047611.t1 | AT1G68920 | 38.983 | 118 | 59 | 4 | 110 | 225 | 305 | 411 | 9.08e-14 | 72.4 |
MS.gene047611.t1 | AT1G27740 | 35.922 | 103 | 62 | 2 | 96 | 195 | 156 | 257 | 9.50e-14 | 70.9 |
MS.gene047611.t1 | AT1G02340 | 30.412 | 194 | 87 | 7 | 84 | 255 | 116 | 283 | 1.01e-13 | 71.2 |
MS.gene047611.t1 | AT1G02340 | 30.412 | 194 | 87 | 7 | 84 | 255 | 123 | 290 | 1.14e-13 | 70.9 |
MS.gene047611.t1 | AT5G50915 | 43.590 | 78 | 42 | 2 | 110 | 186 | 138 | 214 | 2.60e-13 | 69.7 |
MS.gene047611.t1 | AT5G50915 | 43.590 | 78 | 42 | 2 | 110 | 186 | 138 | 214 | 2.60e-13 | 69.7 |
MS.gene047611.t1 | AT5G43175 | 31.967 | 122 | 78 | 2 | 77 | 195 | 103 | 222 | 2.96e-13 | 68.6 |
MS.gene047611.t1 | AT5G50915 | 43.590 | 78 | 42 | 2 | 110 | 186 | 138 | 214 | 3.09e-13 | 69.7 |
MS.gene047611.t1 | AT5G50915 | 43.590 | 78 | 42 | 2 | 110 | 186 | 138 | 214 | 3.09e-13 | 69.7 |
MS.gene047611.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 5.84e-13 | 70.1 |
MS.gene047611.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 7.95e-13 | 69.7 |
MS.gene047611.t1 | AT2G14760 | 39.506 | 81 | 47 | 1 | 104 | 184 | 235 | 313 | 8.36e-13 | 68.9 |
MS.gene047611.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.41e-12 | 67.8 |
MS.gene047611.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.43e-12 | 67.8 |
MS.gene047611.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.68e-12 | 68.6 |
MS.gene047611.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.87e-12 | 68.6 |
MS.gene047611.t1 | AT2G14760 | 41.176 | 68 | 40 | 0 | 117 | 184 | 259 | 326 | 2.54e-12 | 67.4 |
MS.gene047611.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.74e-12 | 67.4 |
MS.gene047611.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.81e-12 | 67.4 |
MS.gene047611.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 3.62e-12 | 67.0 |
MS.gene047611.t1 | AT4G34530 | 44.615 | 65 | 35 | 1 | 110 | 173 | 174 | 238 | 3.74e-12 | 67.0 |
MS.gene047611.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 4.12e-12 | 66.2 |
MS.gene047611.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 4.12e-12 | 66.2 |
MS.gene047611.t1 | AT1G59640 | 46.154 | 65 | 34 | 1 | 110 | 173 | 138 | 202 | 4.65e-12 | 65.9 |
MS.gene047611.t1 | AT3G23690 | 35.922 | 103 | 62 | 2 | 72 | 173 | 158 | 257 | 5.14e-12 | 66.6 |
MS.gene047611.t1 | AT1G10120 | 47.692 | 65 | 33 | 1 | 110 | 173 | 208 | 272 | 6.63e-12 | 66.2 |
MS.gene047611.t1 | AT1G10120 | 47.692 | 65 | 33 | 1 | 110 | 173 | 208 | 272 | 6.63e-12 | 66.2 |
MS.gene047611.t1 | AT1G59640 | 44.737 | 76 | 39 | 2 | 99 | 173 | 129 | 202 | 6.69e-12 | 66.2 |
MS.gene047611.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.61e-11 | 64.3 |
MS.gene047611.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.67e-11 | 64.3 |
MS.gene047611.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 7.94e-11 | 62.0 |
MS.gene047611.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 9.04e-11 | 62.0 |
Find 71 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATGCACCTTGTTAGAATT+TGG | 0.170114 | 5.3:-9408199 | None:intergenic |
CTTGGAGCTGAAGCTGTTTA+AGG | 0.179292 | 5.3:-9408345 | None:intergenic |
TCCATCTTGAAGCTGGTTAA+TGG | 0.190515 | 5.3:-9407368 | None:intergenic |
AGAGTAGATGTCATGTTTAA+AGG | 0.257417 | 5.3:-9409088 | None:intergenic |
CAAAGTCAGCTGGTGGTTCT+AGG | 0.295206 | 5.3:+9407978 | MS.gene047611:CDS |
GAACCACCAGCTGACTTTGT+TGG | 0.358655 | 5.3:-9407974 | None:intergenic |
GCCTTTGTCTCGGATGAGTT+CGG | 0.379108 | 5.3:+9409039 | MS.gene047611:CDS |
GAGTAGATGTCATGTTTAAA+GGG | 0.380721 | 5.3:-9409087 | None:intergenic |
CAGATGTTGTCATTGAGAAA+TGG | 0.381198 | 5.3:+9408971 | MS.gene047611:intron |
AATGTATCTTCCTCTTCTGT+TGG | 0.387184 | 5.3:+9407436 | MS.gene047611:CDS |
AATGTATTGCATTCAATTGC+TGG | 0.398016 | 5.3:-9409409 | None:intergenic |
GATACATTTAAAGCATGGTT+TGG | 0.405835 | 5.3:-9407421 | None:intergenic |
ACATCTTTCAGAGTGGAATC+TGG | 0.412558 | 5.3:+9409223 | MS.gene047611:CDS |
AACAAGTCTTCGCCATGTAT+TGG | 0.418377 | 5.3:-9409380 | None:intergenic |
TACATTCTCTGCCTTTGTCT+CGG | 0.426810 | 5.3:+9409029 | MS.gene047611:CDS |
TCCTCTTCTGTTGGAGCAGG+AGG | 0.430203 | 5.3:+9407445 | MS.gene047611:CDS |
TCCGTGTTGTTAATATATGA+AGG | 0.434408 | 5.3:-9409199 | None:intergenic |
CACTCCTGACTGATCTCTTC+CGG | 0.437568 | 5.3:-9409617 | None:intergenic |
GAAGGATAGGAAGGCATTGA+TGG | 0.439430 | 5.3:-9409181 | None:intergenic |
AGTTCATAATTTGTCAGAAA+AGG | 0.440757 | 5.3:+9408030 | MS.gene047611:CDS |
CTGCGATGTAAATATAATGT+TGG | 0.441190 | 5.3:-9409659 | None:intergenic |
TGCGATGTAAATATAATGTT+GGG | 0.441986 | 5.3:-9409658 | None:intergenic |
ACAAGTTTGCAAAGTATTGT+TGG | 0.445560 | 5.3:-9409590 | None:intergenic |
TATTTACATCGCAGTTAAGT+AGG | 0.447661 | 5.3:+9409668 | MS.gene047611:CDS |
TTTAAATTTGCAGGAGGGTG+TGG | 0.452272 | 5.3:+9407931 | MS.gene047611:intron |
TTGAGAACCGCCTAATAGAT+TGG | 0.459843 | 5.3:-9409438 | None:intergenic |
TCTTCCTCTTCTGTTGGAGC+AGG | 0.460002 | 5.3:+9407442 | MS.gene047611:CDS |
GAGATATACAAACCTGTACT+TGG | 0.469577 | 5.3:-9408363 | None:intergenic |
AAGGGGTTGTCTTGTGGATG+AGG | 0.470197 | 5.3:-9409112 | None:intergenic |
CATCCTATGTACTTTCATGA+AGG | 0.473316 | 5.3:+9409004 | MS.gene047611:CDS |
TAGATTTGATGGATAGAGCA+AGG | 0.473857 | 5.3:-9409131 | None:intergenic |
AGATCTTTCCATCTTGAAGC+TGG | 0.476129 | 5.3:-9407375 | None:intergenic |
TGCAAAGTATTGTTGGTAGT+AGG | 0.479233 | 5.3:-9409583 | None:intergenic |
GACTTGTTGAGCAGAGAAGA+AGG | 0.487830 | 5.3:+9408134 | MS.gene047611:intron |
ACAGCTTCAGCTCCAAGTAC+AGG | 0.499989 | 5.3:+9408351 | MS.gene047611:CDS |
TCTTCATCTTCTTCCATGCA+AGG | 0.502153 | 5.3:+9407343 | MS.gene047611:CDS |
TGATTTATGAAGCCAATACA+TGG | 0.510721 | 5.3:+9409368 | MS.gene047611:intron |
TCCATTAACCAGCTTCAAGA+TGG | 0.520381 | 5.3:+9407367 | MS.gene047611:CDS |
AGGAAGATACATTTAAAGCA+TGG | 0.529279 | 5.3:-9407426 | None:intergenic |
TGGTCTAGAAGTTGAATCAA+AGG | 0.533794 | 5.3:-9407401 | None:intergenic |
TTAATATATGAAGGATAGGA+AGG | 0.535825 | 5.3:-9409190 | None:intergenic |
GTTGTCAAAGAATTTCAGTC+GGG | 0.536110 | 5.3:+9409547 | MS.gene047611:intron |
AGATTTGATGGATAGAGCAA+GGG | 0.536751 | 5.3:-9409130 | None:intergenic |
GTTGTTAATATATGAAGGAT+AGG | 0.542268 | 5.3:-9409194 | None:intergenic |
TTGAGCAGAGAAGAAGGAGT+AGG | 0.550943 | 5.3:+9408140 | MS.gene047611:intron |
GAAGTTCCAACAAAGTCAGC+TGG | 0.551060 | 5.3:+9407968 | MS.gene047611:CDS |
TCCTCCTGCTCCAACAGAAG+AGG | 0.551374 | 5.3:-9407446 | None:intergenic |
AGAGATTTCGTCTTGTGAAG+AGG | 0.551908 | 5.3:-9407290 | None:intergenic |
ACTTTGCAAACTTGTGTCGC+CGG | 0.568077 | 5.3:+9409598 | MS.gene047611:CDS |
TGAGTTCGGAGTTGAGTGAA+GGG | 0.569106 | 5.3:+9409053 | MS.gene047611:CDS |
GGAATCTGGAATCCCAGCAC+AGG | 0.569244 | 5.3:+9409237 | MS.gene047611:CDS |
CTGGTTAATGGATCCTTGCA+TGG | 0.574061 | 5.3:-9407356 | None:intergenic |
ATGAGTTCGGAGTTGAGTGA+AGG | 0.580114 | 5.3:+9409052 | MS.gene047611:CDS |
AGTTGTCAAAGAATTTCAGT+CGG | 0.580865 | 5.3:+9409546 | MS.gene047611:intron |
TAGAGCAAGGGGTTGTCTTG+TGG | 0.585297 | 5.3:-9409118 | None:intergenic |
AAACCTTCATGAAAGTACAT+AGG | 0.590768 | 5.3:-9409007 | None:intergenic |
AATCTATTAGGCGGTTCTCA+AGG | 0.591562 | 5.3:+9409440 | MS.gene047611:CDS |
TCCGAACTCATCCGAGACAA+AGG | 0.607448 | 5.3:-9409040 | None:intergenic |
AAGAAGATGAAGATGAACGA+AGG | 0.614318 | 5.3:-9407333 | None:intergenic |
GATTTGATGGATAGAGCAAG+GGG | 0.629918 | 5.3:-9409129 | None:intergenic |
GTCGCCGGAAGAGATCAGTC+AGG | 0.631870 | 5.3:+9409613 | MS.gene047611:CDS |
ACGTCTGCAACGATCTTCAG+AGG | 0.641377 | 5.3:+9409264 | MS.gene047611:CDS |
TCTAATTCCAAATTCTAACA+AGG | 0.656662 | 5.3:+9408192 | MS.gene047611:CDS |
TCGGAGTTGAGTGAAGGGAA+CGG | 0.662150 | 5.3:+9409058 | MS.gene047611:CDS |
CGGAAGAGATCAGTCAGGAG+TGG | 0.662771 | 5.3:+9409618 | MS.gene047611:CDS |
GTTGGAGCAGGAGGACTCAG+TGG | 0.665702 | 5.3:+9407454 | MS.gene047611:CDS |
GTTCCAACAAAGTCAGCTGG+TGG | 0.670312 | 5.3:+9407971 | MS.gene047611:CDS |
CACGGAAACATCTTTCAGAG+TGG | 0.676503 | 5.3:+9409216 | MS.gene047611:CDS |
TCCTTCATATATTAACAACA+CGG | 0.682934 | 5.3:+9409198 | MS.gene047611:CDS |
TGAATATGACTGTGAAAGTG+AGG | 0.701990 | 5.3:+9407489 | MS.gene047611:CDS |
AATGGAACATAACAACAACA+TGG | 0.706557 | 5.3:+9407246 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGAATTATTCTTTATGTAT+TGG | + | chr5.3:9408262-9408281 | MS.gene047611:intron | 15.0% |
!!! | AGATTAATATTGATTACAAT+TGG | + | chr5.3:9408722-9408741 | MS.gene047611:intron | 15.0% |
!!! | ATCAAAGTATTATTCTTTTT+AGG | - | chr5.3:9407804-9407823 | None:intergenic | 15.0% |
!!! | TTGATTTCAATTTTTATTTG+TGG | + | chr5.3:9408081-9408100 | MS.gene047611:intron | 15.0% |
!! | AAAAAGTAAAAATGAGTGTA+AGG | - | chr5.3:9408490-9408509 | None:intergenic | 20.0% |
!! | AAAAGTAAAAATGAGTGTAA+GGG | - | chr5.3:9408489-9408508 | None:intergenic | 20.0% |
!! | AAGAATAATACTTTGATTCT+TGG | + | chr5.3:9407807-9407826 | MS.gene047611:intron | 20.0% |
!! | ACATGAATACATAAAAAGAA+AGG | - | chr5.3:9407553-9407572 | None:intergenic | 20.0% |
!!! | TAATTTTTTACTCAATGTCT+TGG | + | chr5.3:9407669-9407688 | MS.gene047611:intron | 20.0% |
!!! | TATTGTTTGTATGTGTATTT+TGG | + | chr5.3:9407736-9407755 | MS.gene047611:intron | 20.0% |
!!! | TTCTTTTTATGTATTCATGT+GGG | + | chr5.3:9407553-9407572 | MS.gene047611:intron | 20.0% |
!!! | TTTCTTTTTATGTATTCATG+TGG | + | chr5.3:9407552-9407571 | MS.gene047611:intron | 20.0% |
! | ATAGCAAATTCAATCTAACA+AGG | - | chr5.3:9408902-9408921 | None:intergenic | 25.0% |
! | GTTGTTAATATATGAAGGAT+AGG | - | chr5.3:9409197-9409216 | None:intergenic | 25.0% |
! | TCCTTCATATATTAACAACA+CGG | + | chr5.3:9409198-9409217 | MS.gene047611:CDS | 25.0% |
! | TCTAATTCCAAATTCTAACA+AGG | + | chr5.3:9408192-9408211 | MS.gene047611:CDS | 25.0% |
! | TGCGATGTAAATATAATGTT+GGG | - | chr5.3:9409661-9409680 | None:intergenic | 25.0% |
! | TTAATATATGAAGGATAGGA+AGG | - | chr5.3:9409193-9409212 | None:intergenic | 25.0% |
! | TTAATGCAAGCAATAAAACA+TGG | + | chr5.3:9407708-9407727 | MS.gene047611:intron | 25.0% |
! | TTGATTCTAAATACTTCTCT+CGG | + | chr5.3:9408636-9408655 | MS.gene047611:intron | 25.0% |
!! | AAATTTTGAATGCATGATGT+TGG | + | chr5.3:9409324-9409343 | MS.gene047611:intron | 25.0% |
!! | ACATCTTCTCAAATTAGTTT+CGG | - | chr5.3:9408610-9408629 | None:intergenic | 25.0% |
!! | AGTTCATAATTTGTCAGAAA+AGG | + | chr5.3:9408030-9408049 | MS.gene047611:CDS | 25.0% |
!! | ATTGCATCTTTTAAATTTGC+AGG | + | chr5.3:9407922-9407941 | MS.gene047611:intron | 25.0% |
!! | CATCTGAAATATCATCATAA+AGG | - | chr5.3:9408957-9408976 | None:intergenic | 25.0% |
!! | CATTCTTTTACCAATCTATT+AGG | + | chr5.3:9409428-9409447 | MS.gene047611:CDS | 25.0% |
!! | TCTTTTTATGTATTCATGTG+GGG | + | chr5.3:9407554-9407573 | MS.gene047611:intron | 25.0% |
!! | TTTTTAGACCTTAGTTCAAA+GGG | + | chr5.3:9408224-9408243 | MS.gene047611:intron | 25.0% |
!! | TTTTTGTTAGGTAGATTTGA+TGG | - | chr5.3:9409145-9409164 | None:intergenic | 25.0% |
!!! | ATTGATTACAGTATTGATGA+TGG | - | chr5.3:9408538-9408557 | None:intergenic | 25.0% |
!!! | ATTTTTAGACCTTAGTTCAA+AGG | + | chr5.3:9408223-9408242 | MS.gene047611:intron | 25.0% |
!!! | TAGATTGAATTTGCTATCAA+AGG | + | chr5.3:9408905-9408924 | MS.gene047611:intron | 25.0% |
!!! | TTGATTACAGTATTGATGAT+GGG | - | chr5.3:9408537-9408556 | None:intergenic | 25.0% |
!!! | TTTTGTTGGGATTTGATTTT+GGG | + | chr5.3:9407892-9407911 | MS.gene047611:intron | 25.0% |
!!! | TTTTTGTTGGGATTTGATTT+TGG | + | chr5.3:9407891-9407910 | MS.gene047611:intron | 25.0% |
AACATGTGAAGGATAATTTG+TGG | + | chr5.3:9408757-9408776 | MS.gene047611:intron | 30.0% | |
AATGTATTGCATTCAATTGC+TGG | - | chr5.3:9409412-9409431 | None:intergenic | 30.0% | |
ACAAATTATCCTTCACATGT+TGG | - | chr5.3:9408758-9408777 | None:intergenic | 30.0% | |
AGAGTAGATGTCATGTTTAA+AGG | - | chr5.3:9409091-9409110 | None:intergenic | 30.0% | |
AGTTGTCAAAGAATTTCAGT+CGG | + | chr5.3:9409546-9409565 | MS.gene047611:intron | 30.0% | |
CCTATGTAAAAAGTGAAAAG+TGG | - | chr5.3:9408461-9408480 | None:intergenic | 30.0% | |
CTGCGATGTAAATATAATGT+TGG | - | chr5.3:9409662-9409681 | None:intergenic | 30.0% | |
GAGTAGATGTCATGTTTAAA+GGG | - | chr5.3:9409090-9409109 | None:intergenic | 30.0% | |
TATTTACATCGCAGTTAAGT+AGG | + | chr5.3:9409668-9409687 | MS.gene047611:CDS | 30.0% | |
TGATTTATGAAGCCAATACA+TGG | + | chr5.3:9409368-9409387 | MS.gene047611:intron | 30.0% | |
TTATGCACCTTGTTAGAATT+TGG | - | chr5.3:9408202-9408221 | None:intergenic | 30.0% | |
TTTACTCAATGTCTTGGTAA+AGG | + | chr5.3:9407675-9407694 | MS.gene047611:intron | 30.0% | |
! | AAACCTTCATGAAAGTACAT+AGG | - | chr5.3:9409010-9409029 | None:intergenic | 30.0% |
! | AGGAAGATACATTTAAAGCA+TGG | - | chr5.3:9407429-9407448 | None:intergenic | 30.0% |
! | ATTTTGCTTGTGGATTTTTG+TGG | + | chr5.3:9408111-9408130 | MS.gene047611:intron | 30.0% |
! | CATCTTTTAAATTTGCAGGA+GGG | + | chr5.3:9407926-9407945 | MS.gene047611:intron | 30.0% |
! | GATACATTTAAAGCATGGTT+TGG | - | chr5.3:9407424-9407443 | None:intergenic | 30.0% |
! | TCCGTGTTGTTAATATATGA+AGG | - | chr5.3:9409202-9409221 | None:intergenic | 30.0% |
! | TCTTTTACCAATCTATTAGG+CGG | + | chr5.3:9409431-9409450 | MS.gene047611:CDS | 30.0% |
! | TGGTTATGTAATTTTGCTTG+TGG | + | chr5.3:9408101-9408120 | MS.gene047611:intron | 30.0% |
! | TTTTGCTTGTGGATTTTTGT+GGG | + | chr5.3:9408112-9408131 | MS.gene047611:intron | 30.0% |
!! | ACAAGTTTGCAAAGTATTGT+TGG | - | chr5.3:9409593-9409612 | None:intergenic | 30.0% |
!! | TTTGTTGGGATTTGATTTTG+GGG | + | chr5.3:9407893-9407912 | MS.gene047611:intron | 30.0% |
!!! | CCACTTTTCACTTTTTACAT+AGG | + | chr5.3:9408458-9408477 | MS.gene047611:intron | 30.0% |
!!! | GTCGTTTTGTTGTTTTTGTT+GGG | + | chr5.3:9407879-9407898 | MS.gene047611:intron | 30.0% |
!!! | TGTCGTTTTGTTGTTTTTGT+TGG | + | chr5.3:9407878-9407897 | MS.gene047611:intron | 30.0% |
AAAACACACCCTTTGAACTA+AGG | - | chr5.3:9408235-9408254 | None:intergenic | 35.0% | |
AAGAAGATGAAGATGAACGA+AGG | - | chr5.3:9407336-9407355 | None:intergenic | 35.0% | |
AATGTATCTTCCTCTTCTGT+TGG | + | chr5.3:9407436-9407455 | MS.gene047611:CDS | 35.0% | |
AATGTCTTGGTAAAGGTTCT+TGG | + | chr5.3:9407682-9407701 | MS.gene047611:intron | 35.0% | |
ACAACTGAAGTTATGAAACG+AGG | - | chr5.3:9409532-9409551 | None:intergenic | 35.0% | |
ACATATGGCAGTGTATTACA+AGG | + | chr5.3:9408582-9408601 | MS.gene047611:intron | 35.0% | |
AGTAAAAATGAGTGTAAGGG+AGG | - | chr5.3:9408486-9408505 | None:intergenic | 35.0% | |
ATAAAGGTCACATACAGTTC+AGG | - | chr5.3:9408941-9408960 | None:intergenic | 35.0% | |
CAGATGTTGTCATTGAGAAA+TGG | + | chr5.3:9408971-9408990 | MS.gene047611:intron | 35.0% | |
CATCCTATGTACTTTCATGA+AGG | + | chr5.3:9409004-9409023 | MS.gene047611:CDS | 35.0% | |
GAGATATACAAACCTGTACT+TGG | - | chr5.3:9408366-9408385 | None:intergenic | 35.0% | |
GAGATGCTGGGTTTAAATTT+AGG | - | chr5.3:9408439-9408458 | None:intergenic | 35.0% | |
GTAAAAATGAGTGTAAGGGA+GGG | - | chr5.3:9408485-9408504 | None:intergenic | 35.0% | |
GTGAGATTGTGGTATAAGAA+TGG | - | chr5.3:9409506-9409525 | None:intergenic | 35.0% | |
GTTGTCAAAGAATTTCAGTC+GGG | + | chr5.3:9409547-9409566 | MS.gene047611:intron | 35.0% | |
TGAATATGACTGTGAAAGTG+AGG | + | chr5.3:9407489-9407508 | MS.gene047611:CDS | 35.0% | |
TGGTCTAGAAGTTGAATCAA+AGG | - | chr5.3:9407404-9407423 | None:intergenic | 35.0% | |
TTATCAGTCTGTTACACACA+TGG | - | chr5.3:9408295-9408314 | None:intergenic | 35.0% | |
! | ACTGCACTTTTGTCCTATTT+TGG | + | chr5.3:9408394-9408413 | MS.gene047611:intron | 35.0% |
! | AGATTTGATGGATAGAGCAA+GGG | - | chr5.3:9409133-9409152 | None:intergenic | 35.0% |
! | ATGTCTTCGATTTGATGTGT+TGG | + | chr5.3:9408691-9408710 | MS.gene047611:intron | 35.0% |
! | CTGCACTTTTGTCCTATTTT+GGG | + | chr5.3:9408395-9408414 | MS.gene047611:intron | 35.0% |
! | GATTTTGTACCAACATGTGA+AGG | + | chr5.3:9408746-9408765 | MS.gene047611:intron | 35.0% |
! | GCATCTTTTAAATTTGCAGG+AGG | + | chr5.3:9407925-9407944 | MS.gene047611:intron | 35.0% |
! | TAGATTTGATGGATAGAGCA+AGG | - | chr5.3:9409134-9409153 | None:intergenic | 35.0% |
!! | ATTGATGATGGGCTGAAAAT+AGG | - | chr5.3:9408526-9408545 | None:intergenic | 35.0% |
!! | CTATGAAGCATTGACACATA+TGG | + | chr5.3:9408567-9408586 | MS.gene047611:intron | 35.0% |
!! | TGCAAAGTATTGTTGGTAGT+AGG | - | chr5.3:9409586-9409605 | None:intergenic | 35.0% |
!! | TTGATGATGGGCTGAAAATA+GGG | - | chr5.3:9408525-9408544 | None:intergenic | 35.0% |
AAAGTGAAAAGTGGAGATGC+TGG | - | chr5.3:9408452-9408471 | None:intergenic | 40.0% | |
AACAAGTCTTCGCCATGTAT+TGG | - | chr5.3:9409383-9409402 | None:intergenic | 40.0% | |
AAGTGAAAAGTGGAGATGCT+GGG | - | chr5.3:9408451-9408470 | None:intergenic | 40.0% | |
AATACGACATTCCAGTTTGC+AGG | - | chr5.3:9409299-9409318 | None:intergenic | 40.0% | |
AATCTATTAGGCGGTTCTCA+AGG | + | chr5.3:9409440-9409459 | MS.gene047611:CDS | 40.0% | |
ACATCTTTCAGAGTGGAATC+TGG | + | chr5.3:9409223-9409242 | MS.gene047611:CDS | 40.0% | |
AGAGATTTCGTCTTGTGAAG+AGG | - | chr5.3:9407293-9407312 | None:intergenic | 40.0% | |
AGATCTTTCCATCTTGAAGC+TGG | - | chr5.3:9407378-9407397 | None:intergenic | 40.0% | |
CATCAAATCGAAGACATGTC+AGG | - | chr5.3:9408688-9408707 | None:intergenic | 40.0% | |
TACATTCTCTGCCTTTGTCT+CGG | + | chr5.3:9409029-9409048 | MS.gene047611:CDS | 40.0% | |
TCCATCTTGAAGCTGGTTAA+TGG | - | chr5.3:9407371-9407390 | None:intergenic | 40.0% | |
TCCATTAACCAGCTTCAAGA+TGG | + | chr5.3:9407367-9407386 | MS.gene047611:CDS | 40.0% | |
TCTTCATCTTCTTCCATGCA+AGG | + | chr5.3:9407343-9407362 | MS.gene047611:CDS | 40.0% | |
TTGAGAACCGCCTAATAGAT+TGG | - | chr5.3:9409441-9409460 | None:intergenic | 40.0% | |
TTTAAATTTGCAGGAGGGTG+TGG | + | chr5.3:9407931-9407950 | MS.gene047611:intron | 40.0% | |
! | CTCGACAATGCGTTTTTGTT+AGG | - | chr5.3:9409157-9409176 | None:intergenic | 40.0% |
! | GATTTGATGGATAGAGCAAG+GGG | - | chr5.3:9409132-9409151 | None:intergenic | 40.0% |
!! | CACTTTTGTCCTATTTTGGG+AGG | + | chr5.3:9408398-9408417 | MS.gene047611:intron | 40.0% |
!! | TTCTTGGTCTGTTTCTAGTG+TGG | + | chr5.3:9407823-9407842 | MS.gene047611:intron | 40.0% |
!! | TTGTCCTATTTTGGGAGGTT+GGG | + | chr5.3:9408403-9408422 | MS.gene047611:intron | 40.0% |
!! | TTTGTCCTATTTTGGGAGGT+TGG | + | chr5.3:9408402-9408421 | MS.gene047611:intron | 40.0% |
ACTTTGCAAACTTGTGTCGC+CGG | + | chr5.3:9409598-9409617 | MS.gene047611:CDS | 45.0% | |
ATGAGTTCGGAGTTGAGTGA+AGG | + | chr5.3:9409052-9409071 | MS.gene047611:CDS | 45.0% | |
CACGGAAACATCTTTCAGAG+TGG | + | chr5.3:9409216-9409235 | MS.gene047611:CDS | 45.0% | |
CAGCTGACATTGACACATGT+CGG | + | chr5.3:9408659-9408678 | MS.gene047611:intron | 45.0% | |
CTTGGAGCTGAAGCTGTTTA+AGG | - | chr5.3:9408348-9408367 | None:intergenic | 45.0% | |
GAAGTTCCAACAAAGTCAGC+TGG | + | chr5.3:9407968-9407987 | MS.gene047611:CDS | 45.0% | |
GACATTCCAGTTTGCAGGAT+TGG | - | chr5.3:9409294-9409313 | None:intergenic | 45.0% | |
TGAGTTCGGAGTTGAGTGAA+GGG | + | chr5.3:9409053-9409072 | MS.gene047611:CDS | 45.0% | |
TTGAGCAGAGAAGAAGGAGT+AGG | + | chr5.3:9408140-9408159 | MS.gene047611:intron | 45.0% | |
! | CTGGTTAATGGATCCTTGCA+TGG | - | chr5.3:9407359-9407378 | None:intergenic | 45.0% |
!! | ATGATGGGCTGAAAATAGGG+TGG | - | chr5.3:9408522-9408541 | None:intergenic | 45.0% |
!! | GAAGGATAGGAAGGCATTGA+TGG | - | chr5.3:9409184-9409203 | None:intergenic | 45.0% |
!! | GACTTGTTGAGCAGAGAAGA+AGG | + | chr5.3:9408134-9408153 | MS.gene047611:intron | 45.0% |
!!! | TTTTTAAAATATAAGAAAAT+TGG | + | chr5.3:9408876-9408895 | MS.gene047611:intron | 5.0% |
AAGGGGTTGTCTTGTGGATG+AGG | - | chr5.3:9409115-9409134 | None:intergenic | 50.0% | |
ACAGCTTCAGCTCCAAGTAC+AGG | + | chr5.3:9408351-9408370 | MS.gene047611:CDS | 50.0% | |
ACGTCTGCAACGATCTTCAG+AGG | + | chr5.3:9409264-9409283 | MS.gene047611:CDS | 50.0% | |
AGCTCCCAACCTCCCAAAAT+AGG | - | chr5.3:9408410-9408429 | None:intergenic | 50.0% | |
CAAAGTCAGCTGGTGGTTCT+AGG | + | chr5.3:9407978-9407997 | MS.gene047611:CDS | 50.0% | |
CACTCCTGACTGATCTCTTC+CGG | - | chr5.3:9409620-9409639 | None:intergenic | 50.0% | |
GCCTTTGTCTCGGATGAGTT+CGG | + | chr5.3:9409039-9409058 | MS.gene047611:CDS | 50.0% | |
GGTAAGCCAATCCTGCAAAC+TGG | + | chr5.3:9409285-9409304 | MS.gene047611:intron | 50.0% | |
GTTCCAACAAAGTCAGCTGG+TGG | + | chr5.3:9407971-9407990 | MS.gene047611:CDS | 50.0% | |
TAGAGCAAGGGGTTGTCTTG+TGG | - | chr5.3:9409121-9409140 | None:intergenic | 50.0% | |
TCCGAACTCATCCGAGACAA+AGG | - | chr5.3:9409043-9409062 | None:intergenic | 50.0% | |
TCGGAGTTGAGTGAAGGGAA+CGG | + | chr5.3:9409058-9409077 | MS.gene047611:CDS | 50.0% | |
TCTTCCTCTTCTGTTGGAGC+AGG | + | chr5.3:9407442-9407461 | MS.gene047611:CDS | 50.0% | |
! | AAACGAGGAGCGTGAGATTG+TGG | - | chr5.3:9409517-9409536 | None:intergenic | 50.0% |
! | GAACCACCAGCTGACTTTGT+TGG | - | chr5.3:9407977-9407996 | None:intergenic | 50.0% |
! | GCAGACGTTTTTCCTGTGCT+GGG | - | chr5.3:9409252-9409271 | None:intergenic | 50.0% |
! | TGCAGACGTTTTTCCTGTGC+TGG | - | chr5.3:9409253-9409272 | None:intergenic | 50.0% |
CGGAAGAGATCAGTCAGGAG+TGG | + | chr5.3:9409618-9409637 | MS.gene047611:CDS | 55.0% | |
TCCTCCTGCTCCAACAGAAG+AGG | - | chr5.3:9407449-9407468 | None:intergenic | 55.0% | |
TCCTCTTCTGTTGGAGCAGG+AGG | + | chr5.3:9407445-9407464 | MS.gene047611:CDS | 55.0% | |
! | GGAATCTGGAATCCCAGCAC+AGG | + | chr5.3:9409237-9409256 | MS.gene047611:CDS | 55.0% |
GTCGCCGGAAGAGATCAGTC+AGG | + | chr5.3:9409613-9409632 | MS.gene047611:CDS | 60.0% | |
GTTGGAGCAGGAGGACTCAG+TGG | + | chr5.3:9407454-9407473 | MS.gene047611:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 9407247 | 9409693 | 9407247 | ID=MS.gene047611 |
chr5.3 | mRNA | 9407247 | 9409693 | 9407247 | ID=MS.gene047611.t1;Parent=MS.gene047611 |
chr5.3 | exon | 9407247 | 9407510 | 9407247 | ID=MS.gene047611.t1.exon1;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9407247 | 9407510 | 9407247 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9407944 | 9408051 | 9407944 | ID=MS.gene047611.t1.exon2;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9407944 | 9408051 | 9407944 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9408148 | 9408213 | 9408148 | ID=MS.gene047611.t1.exon3;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9408148 | 9408213 | 9408148 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9408307 | 9408372 | 9408307 | ID=MS.gene047611.t1.exon4;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9408307 | 9408372 | 9408307 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9408974 | 9409285 | 9408974 | ID=MS.gene047611.t1.exon5;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9408974 | 9409285 | 9408974 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9409380 | 9409461 | 9409380 | ID=MS.gene047611.t1.exon6;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9409380 | 9409461 | 9409380 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
chr5.3 | exon | 9409548 | 9409693 | 9409548 | ID=MS.gene047611.t1.exon7;Parent=MS.gene047611.t1 |
chr5.3 | CDS | 9409548 | 9409693 | 9409548 | ID=cds.MS.gene047611.t1;Parent=MS.gene047611.t1 |
Gene Sequence |
Protein sequence |