Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047619.t1 | XP_012574483.1 | 75.3 | 73 | 17 | 1 | 1 | 72 | 131 | 203 | 1.60E-23 | 118.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047619.t1 | Q6ZEZ5 | 39.4 | 71 | 43 | 0 | 1 | 71 | 130 | 200 | 8.2e-08 | 57.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047619.t1 | A0A1S3EGE9 | 75.3 | 73 | 17 | 1 | 1 | 72 | 131 | 203 | 1.2e-23 | 118.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047619.t1 | MTR_5g017110 | 72.222 | 72 | 19 | 1 | 1 | 71 | 132 | 203 | 4.77e-30 | 109 |
| MS.gene047619.t1 | MTR_5g017140 | 67.143 | 70 | 22 | 1 | 1 | 69 | 131 | 200 | 9.19e-27 | 100 |
| MS.gene047619.t1 | MTR_0154s0040 | 61.972 | 71 | 26 | 1 | 1 | 71 | 129 | 198 | 4.77e-24 | 93.6 |
| MS.gene047619.t1 | MTR_0154s0020 | 61.972 | 71 | 26 | 1 | 1 | 71 | 129 | 198 | 4.81e-24 | 93.6 |
| MS.gene047619.t1 | MTR_0189s0010 | 60.563 | 71 | 27 | 1 | 1 | 71 | 149 | 218 | 1.92e-23 | 92.0 |
| MS.gene047619.t1 | MTR_5g059880 | 45.070 | 71 | 36 | 2 | 1 | 69 | 316 | 385 | 8.30e-13 | 62.8 |
| MS.gene047619.t1 | MTR_3g096230 | 38.889 | 72 | 43 | 1 | 1 | 71 | 370 | 441 | 2.89e-11 | 58.5 |
| MS.gene047619.t1 | MTR_3g096230 | 38.889 | 72 | 43 | 1 | 1 | 71 | 370 | 441 | 2.94e-11 | 58.5 |
| MS.gene047619.t1 | MTR_1g071480 | 37.500 | 80 | 49 | 1 | 1 | 79 | 130 | 209 | 3.48e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047619.t1 | AT4G36950 | 56.164 | 73 | 29 | 2 | 1 | 72 | 132 | 202 | 1.25e-19 | 81.6 |
| MS.gene047619.t1 | AT3G50310 | 51.316 | 76 | 33 | 2 | 1 | 72 | 132 | 207 | 9.12e-18 | 76.6 |
| MS.gene047619.t1 | AT5G67080 | 49.333 | 75 | 35 | 1 | 1 | 72 | 134 | 208 | 1.17e-16 | 73.6 |
| MS.gene047619.t1 | AT4G08500 | 45.833 | 72 | 35 | 2 | 1 | 69 | 457 | 527 | 2.28e-14 | 67.4 |
| MS.gene047619.t1 | AT2G05060 | 43.421 | 76 | 36 | 2 | 1 | 71 | 146 | 219 | 5.40e-12 | 60.5 |
| MS.gene047619.t1 | AT3G04810 | 37.500 | 80 | 49 | 1 | 1 | 79 | 130 | 209 | 9.03e-11 | 57.4 |
| MS.gene047619.t1 | AT3G04810 | 37.500 | 80 | 49 | 1 | 1 | 79 | 130 | 209 | 9.03e-11 | 57.4 |
| MS.gene047619.t1 | AT3G04810 | 37.500 | 80 | 49 | 1 | 1 | 79 | 130 | 209 | 9.03e-11 | 57.4 |
Find 16 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAGATTGCTAAGGTAAA+AGG | 0.241564 | 5.3:-9516402 | MS.gene047619:CDS |
| ATGAATCGCCAACAGATATA+TGG | 0.291595 | 5.3:-9516305 | MS.gene047619:CDS |
| ACATTCTCACTCACTGCTTC+CGG | 0.376735 | 5.3:+9516330 | None:intergenic |
| GATAATTCATTTGAAATCAA+TGG | 0.420640 | 5.3:+9516170 | None:intergenic |
| TGCTAAGGTAAAAGGTTTCA+AGG | 0.431990 | 5.3:-9516394 | MS.gene047619:CDS |
| TGGATGTGCCGTTGTGGAAA+TGG | 0.439964 | 5.3:-9516277 | MS.gene047619:CDS |
| CCAACAGATATATGGGCTCT+TGG | 0.446990 | 5.3:-9516297 | MS.gene047619:CDS |
| TCTTCTCCCAGTCCAATATG+AGG | 0.465742 | 5.3:+9516197 | None:intergenic |
| TGAATCGCCAACAGATATAT+GGG | 0.475173 | 5.3:-9516304 | MS.gene047619:CDS |
| CCAAGAGCCCATATATCTGT+TGG | 0.559712 | 5.3:+9516297 | None:intergenic |
| ATCGAATTTCGAGATTGCTA+AGG | 0.565609 | 5.3:-9516409 | MS.gene047619:CDS |
| GGCTCTTGGATGTGCCGTTG+TGG | 0.576855 | 5.3:-9516283 | MS.gene047619:CDS |
| AACTCCGATGTATATGTCGC+CGG | 0.580385 | 5.3:-9516349 | MS.gene047619:CDS |
| GCTAAGGTAAAAGGTTTCAA+GGG | 0.582822 | 5.3:-9516393 | MS.gene047619:CDS |
| TTCAGTAACCATTTCCACAA+CGG | 0.609861 | 5.3:+9516269 | None:intergenic |
| GCTTCCGGCGACATATACAT+CGG | 0.745170 | 5.3:+9516345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAAGATGCAAGAAAAATATG+TGG | - | chr5.3:9516403-9516422 | MS.gene047619:CDS | 25.0% |
| AAGGTTTCAAGGGTGAAAAA+TGG | - | chr5.3:9516249-9516268 | MS.gene047619:CDS | 35.0% | |
| AGGTTTCAAGGGTGAAAAAT+GGG | - | chr5.3:9516250-9516269 | MS.gene047619:CDS | 35.0% | |
| ATCGAATTTCGAGATTGCTA+AGG | - | chr5.3:9516223-9516242 | MS.gene047619:CDS | 35.0% | |
| ATGAATCGCCAACAGATATA+TGG | - | chr5.3:9516327-9516346 | MS.gene047619:CDS | 35.0% | |
| GATGCAAGAAAAATATGTGG+TGG | - | chr5.3:9516406-9516425 | MS.gene047619:CDS | 35.0% | |
| GCTAAGGTAAAAGGTTTCAA+GGG | - | chr5.3:9516239-9516258 | MS.gene047619:CDS | 35.0% | |
| GGTTACTGAAAAATCTTTCG+TGG | - | chr5.3:9516376-9516395 | MS.gene047619:CDS | 35.0% | |
| TGAATCGCCAACAGATATAT+GGG | - | chr5.3:9516328-9516347 | MS.gene047619:CDS | 35.0% | |
| TGCTAAGGTAAAAGGTTTCA+AGG | - | chr5.3:9516238-9516257 | MS.gene047619:CDS | 35.0% | |
| TTCAGTAACCATTTCCACAA+CGG | + | chr5.3:9516366-9516385 | None:intergenic | 35.0% | |
| TTCGAGATTGCTAAGGTAAA+AGG | - | chr5.3:9516230-9516249 | MS.gene047619:CDS | 35.0% | |
| ! | TTTTTGCCTCATATTGGACT+GGG | - | chr5.3:9516429-9516448 | MS.gene047619:CDS | 35.0% |
| AGGGTGAAAAATGGGAATGT+AGG | - | chr5.3:9516258-9516277 | MS.gene047619:CDS | 40.0% | |
| GGGTGAAAAATGGGAATGTA+GGG | - | chr5.3:9516259-9516278 | MS.gene047619:CDS | 40.0% | |
| GGTGAAAAATGGGAATGTAG+GGG | - | chr5.3:9516260-9516279 | MS.gene047619:CDS | 40.0% | |
| ! | GTTTTTGCCTCATATTGGAC+TGG | - | chr5.3:9516428-9516447 | MS.gene047619:CDS | 40.0% |
| ! | TGGTGGTTTTTGCCTCATAT+TGG | - | chr5.3:9516423-9516442 | MS.gene047619:CDS | 40.0% |
| AACTCCGATGTATATGTCGC+CGG | - | chr5.3:9516283-9516302 | MS.gene047619:CDS | 45.0% | |
| ACATTCTCACTCACTGCTTC+CGG | + | chr5.3:9516305-9516324 | None:intergenic | 45.0% | |
| CCAACAGATATATGGGCTCT+TGG | - | chr5.3:9516335-9516354 | MS.gene047619:CDS | 45.0% | |
| CCAAGAGCCCATATATCTGT+TGG | + | chr5.3:9516338-9516357 | None:intergenic | 45.0% | |
| TCTTCTCCCAGTCCAATATG+AGG | + | chr5.3:9516438-9516457 | None:intergenic | 45.0% | |
| GCTTCCGGCGACATATACAT+CGG | + | chr5.3:9516290-9516309 | None:intergenic | 50.0% | |
| ! | TGGATGTGCCGTTGTGGAAA+TGG | - | chr5.3:9516355-9516374 | MS.gene047619:CDS | 50.0% |
| ! | GGCTCTTGGATGTGCCGTTG+TGG | - | chr5.3:9516349-9516368 | MS.gene047619:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 9516176 | 9516478 | 9516176 | ID=MS.gene047619 |
| chr5.3 | mRNA | 9516176 | 9516478 | 9516176 | ID=MS.gene047619.t1;Parent=MS.gene047619 |
| chr5.3 | exon | 9516176 | 9516478 | 9516176 | ID=MS.gene047619.t1.exon1;Parent=MS.gene047619.t1 |
| chr5.3 | CDS | 9516176 | 9516478 | 9516176 | ID=cds.MS.gene047619.t1;Parent=MS.gene047619.t1 |
| Gene Sequence |
| Protein sequence |