AlfalfaGEDB | MS.gene047626

M. sativa cultivar XinJiangDaYe / MS.gene047626

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047626.t1	XP_003611730.1	84	250	37	1	1	250	1	247	4.70E-88	334.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047626.t1	Q9SND4	83.3	108	12	1	103	204	76	183	1.3e-41	171.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047626.t1	G7K6N1	84.0	250	37	1	1	250	1	247	3.4e-88	334.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene047626.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047626.t1	MTR_5g017210	92.063	252	13	3	1	250	1	247	7.99e-141	395
MS.gene047626.t1	MTR_3g101810	54.545	209	77	7	25	215	40	248	9.23e-59	187
MS.gene047626.t1	MTR_8g093500	74.725	91	23	0	113	203	87	177	4.49e-46	155
MS.gene047626.t1	MTR_2g100490	57.252	131	48	3	83	206	227	356	4.32e-32	121
MS.gene047626.t1	MTR_8g015450	63.636	99	32	1	112	206	296	394	4.42e-29	114
MS.gene047626.t1	MTR_7g069590	68.966	58	18	0	146	203	32	89	4.35e-23	92.0
MS.gene047626.t1	MTR_5g079500	55.696	79	33	1	126	202	202	280	2.20e-20	88.6
MS.gene047626.t1	MTR_1g106460	53.731	67	31	0	136	202	234	300	1.46e-17	80.9
MS.gene047626.t1	MTR_1g018090	62.963	54	20	0	149	202	283	336	3.87e-17	80.1
MS.gene047626.t1	MTR_5g005110	62.963	54	20	0	149	202	233	286	6.02e-17	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047626.t1	AT5G67060	56.771	192	70	3	17	204	4	186	1.08e-50	166
MS.gene047626.t1	AT3G50330	53.917	217	72	6	14	223	4	199	4.86e-49	161
MS.gene047626.t1	AT5G67060	56.284	183	68	2	25	204	1	174	1.36e-47	157
MS.gene047626.t1	AT4G00120	66.667	96	29	1	115	207	87	182	3.66e-39	135
MS.gene047626.t1	AT3G21330	54.472	123	48	1	91	205	212	334	3.80e-38	137
MS.gene047626.t1	AT5G09750	75.556	90	22	0	113	202	92	181	7.38e-35	124
MS.gene047626.t1	AT5G01305	69.492	59	18	0	141	199	38	96	7.40e-22	89.4
MS.gene047626.t1	AT5G43175	50.725	69	34	0	134	202	126	194	7.59e-19	82.8
MS.gene047626.t1	AT4G33880	59.677	62	25	0	141	202	267	328	1.66e-18	84.0
MS.gene047626.t1	AT5G37800	56.164	73	25	1	137	202	191	263	3.69e-18	82.4

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Find 57 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGTGAAGATTTCAA+AGG	0.590303	5.3:+9576869	MS.gene047626:CDS
AAAGAATTAGTGAAAGAATA+AGG	0.285456	5.3:+9576925	MS.gene047626:CDS
AACAGAGTTCAAATCCCATC+AGG	0.513806	5.3:+9576714	MS.gene047626:CDS
AATAGACCTTTGAATGTTGT+TGG	0.403761	5.3:+9577068	MS.gene047626:CDS
AATGGTGGATTGATCAATGA+AGG	0.629442	5.3:-9576642	None:intergenic
AATTACTCTTCTTTGCTTAG+AGG	0.258079	5.3:+9577122	MS.gene047626:CDS
AATTGTTGGTTCTTCCTGAT+GGG	0.499420	5.3:-9576728	None:intergenic
ACAAACAATGATTTCCCTTA+TGG	0.235794	5.3:+9576591	MS.gene047626:CDS
ACTAAGCATTTGTTTGGAAG+TGG	0.402015	5.3:-9577174	None:intergenic
AGAGATGATATTTCGAATGG+CGG	0.620797	5.3:+9576797	MS.gene047626:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGACCTTTGAATGTTGT+TGG	+	chr5.3:9577068-9577087	MS.gene047626:CDS	30.0%
AATTACTCTTCTTTGCTTAG+AGG	+	chr5.3:9577122-9577141	MS.gene047626:CDS	30.0%
ACAAACAATGATTTCCCTTA+TGG	+	chr5.3:9576591-9576610	MS.gene047626:CDS	30.0%
ATAGACCTTTGAATGTTGTT+GGG	+	chr5.3:9577069-9577088	MS.gene047626:CDS	30.0%
ATAGGAGAATGAAGAATTGT+TGG	-	chr5.3:9576745-9576764	None:intergenic	30.0%
ATCTTCACATTCTTTCTCTT+TGG	-	chr5.3:9576864-9576883	None:intergenic	30.0%
GAAGACATACTGAAAACTTT+GGG	+	chr5.3:9576453-9576472	MS.gene047626:CDS	30.0%
TGAAGACATACTGAAAACTT+TGG	+	chr5.3:9576452-9576471	MS.gene047626:CDS	30.0%
ACTAAGCATTTGTTTGGAAG+TGG	-	chr5.3:9577177-9577196	None:intergenic	35.0%
AGAGATGATATTTCGAATGG+CGG	+	chr5.3:9576797-9576816	MS.gene047626:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	9576447	9577199	9576447	ID=MS.gene047626
chr5.3	mRNA	9576447	9577199	9576447	ID=MS.gene047626.t1;Parent=MS.gene047626
chr5.3	exon	9576447	9577199	9576447	ID=MS.gene047626.t1.exon1;Parent=MS.gene047626.t1
chr5.3	CDS	9576447	9577199	9576447	ID=cds.MS.gene047626.t1;Parent=MS.gene047626.t1

Gene Sequence

>MS.gene047626

ATGGATGAAGACATACTGAAAACTTTGGGAAATGTTGAAAGCAACATGGACATGATGACAATGATGATGCAAATGGAAAAGTTCCCTGATTCATATGAACCTTTTTATAGCAACACCAATAACAACACTCTCAATCTCAATCTCACAAACAATGATTTCCCTTATGGAAACTCAAATGTAACTTCATCACTCACACCTTCATTGATCAATCCACCATTGTCTTATCCTCTTCAACAACCAATGACACCACCGCTGTCGCTTCAACCCAACAGAGTTCAAATCCCATCAGGAAGAACCAACAATTCTTCATTCTCCTATCCCGAGAAGAAGAATTCAATGGCAGCAATGAGAGAGATGATATTTCGAATGGCGGTTATGCAACCGATTAACATAGACCCAGAAACCATTAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCAATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGTTGGGGCAAATAGACCTTTGAATGTTGTTGGGTTTCAAGGAGTGGTTTCTAATGCTAATTATAATTACTCTTCTTTGCTTAGAGGTTGTTCATCACCTTGCCAAATGGTGGGTCCCACTTCCAAACAAATGCTTAGTTGA

Protein sequence

>MS.gene047626.t1

MDEDILKTLGNVESNMDMMTMMMQMEKFPDSYEPFYSNTNNNTLNLNLTNNDFPYGNSNVTSSLTPSLINPPLSYPLQQPMTPPLSLQPNRVQIPSGRTNNSSFSYPEKKNSMAAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFQGVVSNANYNYSSLLRGCSSPCQMVGPTSKQMLS