AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047670.t1 MTR_5g017980 95.062 324 16 0 2 325 3 326 0.0 571
MS.gene047670.t1 MTR_5g017980 94.753 324 16 1 2 325 3 325 0.0 564
MS.gene047670.t1 MTR_5g017980 94.753 324 15 2 2 325 3 324 0.0 560
MS.gene047670.t1 MTR_4g086835 39.268 410 149 13 5 324 8 407 1.91e-65 212
MS.gene047670.t1 MTR_4g086835 39.024 410 149 14 5 324 8 406 5.71e-63 206
MS.gene047670.t1 MTR_4g113140 35.505 307 139 9 9 263 6 305 3.32e-40 146
MS.gene047670.t1 MTR_5g054300 36.398 261 102 8 39 253 17 259 7.19e-36 133
MS.gene047670.t1 MTR_1g093080 33.333 330 143 14 34 293 2 324 1.18e-35 133
MS.gene047670.t1 MTR_1g093080 34.767 279 117 12 34 254 2 273 8.97e-29 112
MS.gene047670.t1 MTR_3g106220 39.200 125 64 5 191 306 197 318 2.18e-14 74.3
MS.gene047670.t1 MTR_2g027860 55.714 70 30 1 192 261 49 117 2.69e-14 73.2
MS.gene047670.t1 MTR_7g088070 63.636 55 20 0 192 246 50 104 3.66e-14 72.0
MS.gene047670.t1 MTR_7g088070 63.636 55 20 0 192 246 50 104 3.91e-14 72.0
MS.gene047670.t1 MTR_4g121020 57.377 61 25 1 191 251 214 273 4.99e-14 73.2
MS.gene047670.t1 MTR_4g121020 57.377 61 25 1 191 251 214 273 5.09e-14 73.2
MS.gene047670.t1 MTR_5g041350 60.000 55 22 0 192 246 15 69 5.11e-14 72.4
MS.gene047670.t1 MTR_4g121020 57.377 61 25 1 191 251 110 169 5.59e-14 73.2
MS.gene047670.t1 MTR_1g090670 58.621 58 24 0 189 246 41 98 1.79e-13 70.1
MS.gene047670.t1 MTR_4g081710 42.697 89 50 1 192 279 17 105 2.87e-13 70.1
MS.gene047670.t1 MTR_1g032570 48.649 74 37 1 189 262 128 200 3.12e-13 70.9
MS.gene047670.t1 MTR_1g032570 48.649 74 37 1 189 262 197 269 3.46e-13 70.9
MS.gene047670.t1 MTR_1g013170 50.769 65 31 1 187 251 186 249 3.78e-13 70.5
MS.gene047670.t1 MTR_2g034960 50.000 72 35 1 189 260 208 278 3.82e-13 70.5
MS.gene047670.t1 MTR_1g053830 50.877 57 28 0 190 246 16 72 4.24e-13 65.1
MS.gene047670.t1 MTR_5g014040 42.222 90 46 3 163 251 285 369 4.66e-13 70.1
MS.gene047670.t1 MTR_2g027800 60.000 55 22 0 192 246 39 93 5.77e-13 68.9
MS.gene047670.t1 MTR_7g089010 51.667 60 28 1 191 250 90 148 5.83e-13 68.9
MS.gene047670.t1 MTR_1g080330 53.731 67 30 1 189 255 172 237 6.32e-13 68.6
MS.gene047670.t1 MTR_1g080330 53.731 67 30 1 189 255 172 237 7.04e-13 69.3
MS.gene047670.t1 MTR_2g027800 60.000 55 22 0 192 246 39 93 8.25e-13 68.6
MS.gene047670.t1 MTR_7g098250 52.239 67 31 1 189 255 259 324 1.63e-12 68.6
MS.gene047670.t1 MTR_7g115530 59.259 54 22 0 192 245 218 271 1.70e-12 67.4
MS.gene047670.t1 MTR_6g444980 60.000 55 22 0 192 246 35 89 1.83e-12 67.8
MS.gene047670.t1 MTR_6g444980 60.000 55 22 0 192 246 35 89 2.13e-12 67.4
MS.gene047670.t1 MTR_2g450070 50.000 62 30 1 189 250 210 270 2.46e-12 68.2
MS.gene047670.t1 MTR_2g450070 50.000 62 30 1 189 250 210 270 2.75e-12 68.2
MS.gene047670.t1 MTR_7g115530 59.259 54 22 0 192 245 218 271 2.80e-12 67.0
MS.gene047670.t1 MTR_3g064840 46.988 83 40 1 163 245 249 327 2.84e-12 67.8
MS.gene047670.t1 MTR_7g115530 59.259 54 22 0 192 245 218 271 3.00e-12 67.0
MS.gene047670.t1 MTR_2g086450 38.679 106 50 2 141 246 9 99 4.08e-12 67.0
MS.gene047670.t1 MTR_7g115530 59.259 54 22 0 192 245 218 271 4.45e-12 67.0
MS.gene047670.t1 MTR_5g027440 47.222 72 36 1 192 261 25 96 5.60e-12 65.9
MS.gene047670.t1 MTR_4g064730 45.312 64 34 1 188 251 127 189 7.64e-12 65.5
MS.gene047670.t1 MTR_1g053835 54.386 57 26 0 190 246 256 312 8.69e-12 66.2
MS.gene047670.t1 MTR_6g071625 37.815 119 57 3 158 270 175 282 8.78e-12 65.9
MS.gene047670.t1 MTR_6g032990 52.727 55 26 0 192 246 42 96 1.45e-11 65.5
MS.gene047670.t1 MTR_1g112370 59.184 49 20 0 197 245 27 75 1.48e-11 65.1
MS.gene047670.t1 MTR_7g093030 53.571 56 26 0 190 245 210 265 2.38e-11 63.9
MS.gene047670.t1 MTR_5g029470 31.061 132 78 2 153 284 184 302 2.69e-11 64.7
MS.gene047670.t1 MTR_4g131580 50.000 60 29 1 191 250 199 257 3.05e-11 64.7
MS.gene047670.t1 MTR_7g117705 45.714 70 37 1 191 260 190 258 3.98e-11 64.3
MS.gene047670.t1 MTR_7g093030 53.571 56 26 0 190 245 210 265 5.00e-11 63.5
MS.gene047670.t1 MTR_4g098870 43.939 66 36 1 186 251 343 407 5.13e-11 63.9
MS.gene047670.t1 MTR_4g098870 43.939 66 36 1 186 251 304 368 5.22e-11 63.9
MS.gene047670.t1 MTR_4g098870 43.939 66 36 1 186 251 324 388 5.23e-11 63.9
MS.gene047670.t1 MTR_8g066310 50.820 61 30 0 185 245 166 226 5.93e-11 63.2
MS.gene047670.t1 MTR_4g098870 43.939 66 36 1 186 251 304 368 6.57e-11 63.5
MS.gene047670.t1 MTR_4g098870 43.939 66 36 1 186 251 324 388 6.76e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047670.t1 AT4G37180 40.055 362 156 11 6 329 12 350 1.86e-60 197
MS.gene047670.t1 AT4G37180 39.295 369 156 12 6 329 12 357 1.41e-57 190
MS.gene047670.t1 AT4G37180 43.985 266 103 8 6 242 12 260 1.42e-51 172
MS.gene047670.t1 AT2G03500 38.112 286 133 8 9 250 6 291 1.68e-42 152
MS.gene047670.t1 AT1G68670 35.461 282 118 7 31 256 6 279 2.70e-40 145
MS.gene047670.t1 AT1G25550 35.636 275 116 7 31 256 10 272 4.39e-40 144
MS.gene047670.t1 AT1G49560 56.154 130 37 4 180 290 171 299 6.63e-35 130
MS.gene047670.t1 AT1G25550 34.483 261 111 6 31 242 10 259 1.10e-33 125
MS.gene047670.t1 AT1G13300 85.000 60 9 0 191 250 180 239 3.89e-29 115
MS.gene047670.t1 AT1G49560 70.833 72 12 1 180 242 171 242 4.10e-26 105
MS.gene047670.t1 AT3G25790 81.818 55 10 0 196 250 200 254 1.84e-25 105
MS.gene047670.t1 AT3G25790 80.851 47 9 0 196 242 200 246 2.37e-20 89.4
MS.gene047670.t1 AT2G01060 54.930 71 31 1 185 255 8 77 2.46e-14 72.8
MS.gene047670.t1 AT2G20400 44.828 87 47 1 192 278 231 316 2.95e-14 73.6
MS.gene047670.t1 AT2G20400 46.512 86 43 2 192 277 231 313 1.20e-13 71.6
MS.gene047670.t1 AT2G06020 50.000 64 32 0 183 246 77 140 1.44e-13 70.9
MS.gene047670.t1 AT4G13640 61.818 55 21 0 192 246 37 91 1.60e-13 70.5
MS.gene047670.t1 AT4G13640 61.818 55 21 0 192 246 37 91 1.63e-13 70.5
MS.gene047670.t1 AT5G05090 51.667 60 28 1 191 250 80 138 2.07e-13 69.7
MS.gene047670.t1 AT3G10760 51.667 60 28 1 191 250 104 162 3.16e-13 70.1
MS.gene047670.t1 AT3G24120 60.000 55 22 0 192 246 41 95 3.25e-13 69.7
MS.gene047670.t1 AT3G24120 60.000 55 22 0 192 246 41 95 3.50e-13 69.3
MS.gene047670.t1 AT5G59570 46.875 64 33 1 188 251 137 199 3.92e-13 69.3
MS.gene047670.t1 AT5G59570 46.875 64 33 1 188 251 137 199 3.92e-13 69.3
MS.gene047670.t1 AT2G40970 51.667 60 28 1 191 250 104 162 6.31e-13 68.2
MS.gene047670.t1 AT3G12730 58.182 55 23 0 192 246 23 77 8.12e-13 67.4
MS.gene047670.t1 AT3G16857 54.098 61 27 1 191 251 166 225 9.19e-13 69.3
MS.gene047670.t1 AT3G16857 54.098 61 27 1 191 251 236 295 1.06e-12 69.3
MS.gene047670.t1 AT3G16857 54.098 61 27 1 191 251 236 295 1.18e-12 69.3
MS.gene047670.t1 AT5G58080 49.206 63 31 1 189 251 191 252 1.36e-12 68.9
MS.gene047670.t1 AT3G04030 56.364 55 24 0 192 246 45 99 2.28e-12 67.8
MS.gene047670.t1 AT3G04030 56.364 55 24 0 192 246 45 99 2.46e-12 67.8
MS.gene047670.t1 AT5G06800 54.545 55 25 0 192 246 192 246 2.71e-12 66.6
MS.gene047670.t1 AT1G79430 60.000 55 22 0 192 246 34 88 3.35e-12 67.0
MS.gene047670.t1 AT1G67710 50.746 67 33 0 185 251 112 178 3.50e-12 67.4
MS.gene047670.t1 AT1G67710 50.746 67 33 0 185 251 121 187 3.53e-12 67.4
MS.gene047670.t1 AT1G67710 50.746 67 33 0 185 251 186 252 4.02e-12 67.4
MS.gene047670.t1 AT5G18240 56.364 55 24 0 192 246 45 99 4.75e-12 67.0
MS.gene047670.t1 AT5G18240 56.364 55 24 0 192 246 45 99 4.75e-12 67.0
MS.gene047670.t1 AT3G13040 50.000 64 32 0 183 246 232 295 4.87e-12 67.0
MS.gene047670.t1 AT3G13040 50.000 64 32 0 183 246 232 295 4.87e-12 67.0
MS.gene047670.t1 AT3G13040 50.000 64 32 0 183 246 232 295 4.87e-12 67.0
MS.gene047670.t1 AT5G18240 56.364 55 24 0 192 246 45 99 5.42e-12 66.6
MS.gene047670.t1 AT5G18240 56.364 55 24 0 192 246 45 99 5.55e-12 66.6
MS.gene047670.t1 AT5G18240 56.364 55 24 0 192 246 45 99 5.55e-12 66.6
MS.gene047670.t1 AT3G46640 47.541 61 31 1 191 251 143 202 5.66e-12 66.2
MS.gene047670.t1 AT3G46640 47.541 61 31 1 191 251 143 202 5.66e-12 66.2
MS.gene047670.t1 AT4G17695 41.237 97 47 2 177 272 148 235 5.73e-12 66.2
MS.gene047670.t1 AT3G04450 50.820 61 30 0 185 245 231 291 5.88e-12 65.9
MS.gene047670.t1 AT5G45580 56.364 55 24 0 192 246 7 61 6.34e-12 65.5
MS.gene047670.t1 AT5G45580 56.364 55 24 0 192 246 23 77 6.88e-12 65.5
MS.gene047670.t1 AT3G46640 47.541 61 31 1 191 251 143 202 7.52e-12 65.9
MS.gene047670.t1 AT5G06800 54.545 55 25 0 192 246 192 246 7.65e-12 66.2
MS.gene047670.t1 AT5G06800 54.545 55 25 0 192 246 192 246 7.87e-12 66.2
MS.gene047670.t1 AT1G32240 38.776 98 51 1 182 279 203 291 8.25e-12 65.9
MS.gene047670.t1 AT1G32240 38.776 98 51 1 182 279 203 291 1.02e-11 65.9
MS.gene047670.t1 AT3G04450 50.820 61 30 0 185 245 231 291 1.05e-11 65.9
MS.gene047670.t1 AT3G04450 50.820 61 30 0 185 245 191 251 1.22e-11 65.5
MS.gene047670.t1 AT3G04450 50.820 61 30 0 185 245 191 251 1.22e-11 65.5
MS.gene047670.t1 AT2G01760 50.000 62 30 1 190 251 226 286 1.51e-11 65.5
MS.gene047670.t1 AT2G01760 50.000 62 30 1 190 251 133 193 1.51e-11 64.7
MS.gene047670.t1 AT2G01760 50.000 62 30 1 190 251 198 258 1.57e-11 65.1
MS.gene047670.t1 AT1G69580 50.909 55 27 0 192 246 34 88 1.60e-11 65.1
MS.gene047670.t1 AT2G25180 46.377 69 36 1 191 259 194 261 1.63e-11 65.5
MS.gene047670.t1 AT1G69580 50.909 55 27 0 192 246 34 88 1.76e-11 64.7
MS.gene047670.t1 AT5G29000 52.632 57 27 0 189 245 228 284 2.11e-11 64.3
MS.gene047670.t1 AT5G16560 51.562 64 31 0 182 245 209 272 2.46e-11 64.7
MS.gene047670.t1 AT4G31920 41.892 74 42 1 191 264 182 254 2.48e-11 65.1
MS.gene047670.t1 AT4G28610 55.556 54 24 0 192 245 225 278 2.77e-11 64.7
MS.gene047670.t1 AT5G29000 52.632 57 27 0 189 245 185 241 4.52e-11 63.9
MS.gene047670.t1 AT5G29000 52.632 57 27 0 189 245 185 241 4.52e-11 63.9
MS.gene047670.t1 AT5G29000 52.632 57 27 0 189 245 228 284 4.61e-11 63.9
MS.gene047670.t1 AT5G42630 53.333 60 28 0 186 245 99 158 6.11e-11 62.0
MS.gene047670.t1 AT4G04605 53.571 56 26 0 190 245 12 67 9.28e-11 61.2

Find 72 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGGTGGAGGGGTATTTA+TGG 0.172244 5.3:-10231876 MS.gene047670:CDS
CAGCCACTCCTAAGCAAATT+AGG 0.199099 5.3:-10231085 MS.gene047670:CDS
AAAATTAGTTACCATCATTA+AGG 0.265474 5.3:+10232262 None:intergenic
CCAGCACCTCCTTTGTTTCC+TGG 0.269810 5.3:+10231685 None:intergenic
AAAAGTTGGGTTGATGAAAA+TGG 0.274484 5.3:-10232123 MS.gene047670:CDS
ATTCCCAGTTTCGTCAATTC+AGG 0.284606 5.3:-10230854 MS.gene047670:CDS
AGCAATCAGATTGCAGGAAT+TGG 0.302511 5.3:-10230660 MS.gene047670:CDS
CTCCTTGGTGGATCTGTTCA+AGG 0.312173 5.3:-10230724 MS.gene047670:CDS
GCCTCCTGAATTGACGAAAC+TGG 0.313674 5.3:+10230850 None:intergenic
AATGGTGGAGGGGTATTTAT+GGG 0.317942 5.3:-10231875 MS.gene047670:CDS
AAGAGTGGTGATGGTAGTTC+TGG 0.342533 5.3:-10231773 MS.gene047670:CDS
AACCTTTGCAGCAGAGTTCC+AGG 0.347695 5.3:-10231703 MS.gene047670:CDS
ACAAGCTAAGAGCTTTAGTT+TGG 0.377820 5.3:-10231822 MS.gene047670:CDS
ACTGTGATAATAAGAAGAAT+TGG 0.383175 5.3:-10232085 MS.gene047670:CDS
AGCCACTCCTAAGCAAATTA+GGG 0.392450 5.3:-10231084 MS.gene047670:CDS
CTCAGAGTCTGTTTCTCCAC+AGG 0.393005 5.3:-10230764 MS.gene047670:CDS
TGCAAAGGTTGCGGCGGCTG+AGG 0.403383 5.3:+10231716 None:intergenic
CATCCATACTGTTTCTTCCA+TGG 0.409764 5.3:+10230692 None:intergenic
TTGTGATTATGCAGAAGTAT+AGG 0.413901 5.3:-10230891 MS.gene047670:intron
CCTCTTACTCCTCTTCTCCT+TGG 0.417068 5.3:-10230739 MS.gene047670:CDS
AAGATGAGCAATCAGATTGC+AGG 0.425444 5.3:-10230666 MS.gene047670:CDS
TAAGGAGGAGTATGGAAAGA+GGG 0.427844 5.3:+10232280 None:intergenic
TAATAAGTTAGCCTTGTATA+TGG 0.434530 5.3:-10230827 MS.gene047670:CDS
ACCATCATTAAGGAGGAGTA+TGG 0.434982 5.3:+10232272 None:intergenic
AAGCCATGGAAGAAACAGTA+TGG 0.440126 5.3:-10230695 MS.gene047670:CDS
CTTACTCCTCTTCTCCTTGG+TGG 0.445651 5.3:-10230736 MS.gene047670:CDS
ACAATGAAGGTGATGATGAT+AGG 0.445952 5.3:-10231916 MS.gene047670:CDS
TATTGTCACTCACTTGCAAA+TGG 0.459590 5.3:+10231018 None:intergenic
TCCATACTCCTCCTTAATGA+TGG 0.469852 5.3:-10232273 MS.gene047670:intron
CCAAGGAGAAGAGGAGTAAG+AGG 0.473664 5.3:+10230739 None:intergenic
TTCCCTAATTTGCTTAGGAG+TGG 0.487933 5.3:+10231082 None:intergenic
TTAAGGAGGAGTATGGAAAG+AGG 0.491286 5.3:+10232279 None:intergenic
CAGGAATTGGAAAAGTGATC+AGG 0.500799 5.3:-10230647 MS.gene047670:CDS
ATTTAATGAAAATCTGTTGA+AGG 0.503957 5.3:-10231852 MS.gene047670:CDS
TTCCTGGAACTCTGCTGCAA+AGG 0.504800 5.3:+10231701 None:intergenic
GTTGAAGTGCATCAACAAAT+CGG 0.508453 5.3:+10231645 None:intergenic
TGATGACTTAGTTCATAGCT+TGG 0.508826 5.3:-10232343 MS.gene047670:CDS
CCTCCTGAATTGACGAAACT+GGG 0.520520 5.3:+10230851 None:intergenic
CCAGGAAACAAAGGAGGTGC+TGG 0.526510 5.3:-10231685 MS.gene047670:CDS
GTTCAAGGTCTTTCAAGCCA+TGG 0.531430 5.3:-10230709 MS.gene047670:CDS
GAACTCTGCTGCAAAGGTTG+CGG 0.536482 5.3:+10231707 None:intergenic
AGGGAAAAGATGCAAGTGGA+TGG 0.538779 5.3:-10231065 MS.gene047670:CDS
TCAGAGTCTGTTTCTCCACA+GGG 0.539092 5.3:-10230763 MS.gene047670:CDS
GGATGAGTTCAGCTCAGCTA+TGG 0.541177 5.3:-10232064 MS.gene047670:CDS
GGAAATTCAAAGAGTGGTGA+TGG 0.543852 5.3:-10231782 MS.gene047670:CDS
GTTGTTGAGGAAATGAGAAA+CGG 0.545414 5.3:+10232407 None:intergenic
TAATGAAAATCTGTTGAAGG+AGG 0.547757 5.3:-10231849 MS.gene047670:CDS
CTCTGCTGCAAAGGTTGCGG+CGG 0.547761 5.3:+10231710 None:intergenic
TGGTTTGAACAACGTTGTTG+AGG 0.552246 5.3:+10232394 None:intergenic
TGTGAAGAAGATACATCAAA+GGG 0.552624 5.3:-10230793 MS.gene047670:CDS
CCCAGTTTCGTCAATTCAGG+AGG 0.558843 5.3:-10230851 MS.gene047670:CDS
ACAAAGGAGGTGCTGGTCGT+CGG 0.559002 5.3:-10231678 MS.gene047670:CDS
CAACAGCTTGGTGGAGCACA+TGG 0.565013 5.3:-10231626 MS.gene047670:intron
GTTGATGCACTTCAACAGCT+TGG 0.565906 5.3:-10231638 MS.gene047670:CDS
ACAGAAGAGTAATGGTGGAG+GGG 0.566775 5.3:-10231885 MS.gene047670:CDS
ACAGATCCACCAAGGAGAAG+AGG 0.569987 5.3:+10230730 None:intergenic
GTGTTACAGAAGAGTAATGG+TGG 0.573520 5.3:-10231890 MS.gene047670:CDS
ATGTGAAGAAGATACATCAA+AGG 0.582691 5.3:-10230794 MS.gene047670:CDS
GATGCACTTCAACAGCTTGG+TGG 0.583631 5.3:-10231635 MS.gene047670:CDS
ATTAGTTACCATCATTAAGG+AGG 0.585189 5.3:+10232265 None:intergenic
AGCAGAGTTCCAGGAAACAA+AGG 0.588997 5.3:-10231694 MS.gene047670:CDS
ATTGTGTTACAGAAGAGTAA+TGG 0.592672 5.3:-10231893 MS.gene047670:CDS
TTACAGAAGAGTAATGGTGG+AGG 0.599891 5.3:-10231887 MS.gene047670:CDS
TACAGAAGAGTAATGGTGGA+GGG 0.606656 5.3:-10231886 MS.gene047670:CDS
AATTAGGGAAAAGATGCAAG+TGG 0.615575 5.3:-10231069 MS.gene047670:CDS
TTGATCTTGAGCCATATACA+AGG 0.616538 5.3:+10230816 None:intergenic
AGTCATGGAAATTCAAAGAG+TGG 0.617489 5.3:-10231788 MS.gene047670:CDS
TTGGTGTCTGAAGTGAGTCA+TGG 0.626831 5.3:-10231803 MS.gene047670:CDS
AAGTTTCTGAGACATGTCGT+TGG 0.646359 5.3:+10232374 None:intergenic
AGAGGAGTAAGAGGACCCTG+TGG 0.650364 5.3:+10230748 None:intergenic
AGAGTTCCAGGAAACAAAGG+AGG 0.672803 5.3:-10231691 MS.gene047670:CDS
GACCTTGAACAGATCCACCA+AGG 0.687479 5.3:+10230722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATCACAATTAAAAAAA+AGG + chr5.3:10231098-10231117 None:intergenic 10.0%
!! AAAATTAACAAAAAAGAAAA+AGG + chr5.3:10230887-10230906 None:intergenic 10.0%
!!! AATTTTCTAATTAATTTTTG+TGG - chr5.3:10230838-10230857 MS.gene047670:CDS 10.0%
!! AAAATTAGTTACCATCATTA+AGG + chr5.3:10230824-10230843 None:intergenic 20.0%
!! AATGATGAAAAAGAAAAAGT+TGG - chr5.3:10230946-10230965 MS.gene047670:intron 20.0%
!! ATGATGAAAAAGAAAAAGTT+GGG - chr5.3:10230947-10230966 MS.gene047670:intron 20.0%
!! ATTTAATGAAAATCTGTTGA+AGG - chr5.3:10231231-10231250 MS.gene047670:intron 20.0%
!!! AGTTCTAAGTTATAACAAAT+AGG + chr5.3:10231873-10231892 None:intergenic 20.0%
! ACTAATAATCGTATTAACCA+TGG + chr5.3:10232114-10232133 None:intergenic 25.0%
! ACTGTGATAATAAGAAGAAT+TGG - chr5.3:10230998-10231017 MS.gene047670:intron 25.0%
! AGATTACATGACATGTTATT+AGG - chr5.3:10231833-10231852 MS.gene047670:CDS 25.0%
! GATTACATGACATGTTATTA+GGG - chr5.3:10231834-10231853 MS.gene047670:CDS 25.0%
! TACAAAAAAGAAAACCAGTT+AGG + chr5.3:10231977-10231996 None:intergenic 25.0%
! TAGAACTGTTTGATTAAGAT+TGG - chr5.3:10231886-10231905 MS.gene047670:CDS 25.0%
!! ATGGACTAATCAAACAAAAA+CGG - chr5.3:10231038-10231057 MS.gene047670:CDS 25.0%
!! ATGTTATTAGGGATTAGTAT+AGG - chr5.3:10231845-10231864 MS.gene047670:CDS 25.0%
!! CAATTTGGAATTGAAATTGT+GGG - chr5.3:10231602-10231621 MS.gene047670:intron 25.0%
!! TCTTAGTGTCTATTTTGTAT+TGG - chr5.3:10231556-10231575 MS.gene047670:intron 25.0%
!! TGTCTATTTTGTATTGGATT+TGG - chr5.3:10231562-10231581 MS.gene047670:intron 25.0%
!!! TAATAAGTTAGCCTTGTATA+TGG - chr5.3:10232256-10232275 MS.gene047670:intron 25.0%
!!! TTGTGGTATTTCTTGTTTTT+TGG - chr5.3:10230855-10230874 MS.gene047670:CDS 25.0%
!!! TTTTTTTGGTAGAACAATGA+AGG - chr5.3:10231154-10231173 MS.gene047670:intron 25.0%
AAAAAAATTTGACCGTACAC+AGG - chr5.3:10231931-10231950 MS.gene047670:intron 30.0%
AACTGTTTGATTAAGATTGG+AGG - chr5.3:10231889-10231908 MS.gene047670:CDS 30.0%
AATCAATCTTAGTCGTTGTA+TGG - chr5.3:10231693-10231712 MS.gene047670:CDS 30.0%
ATAATCGTATTAACCATGGA+TGG + chr5.3:10232110-10232129 None:intergenic 30.0%
ATGTGAAGAAGATACATCAA+AGG - chr5.3:10232289-10232308 MS.gene047670:CDS 30.0%
ATTAGTTACCATCATTAAGG+AGG + chr5.3:10230821-10230840 None:intergenic 30.0%
ATTGTGTTACAGAAGAGTAA+TGG - chr5.3:10231190-10231209 MS.gene047670:intron 30.0%
CCACAATTTCAATTCCAAAT+TGG + chr5.3:10231604-10231623 None:intergenic 30.0%
GCTCTGATTTATTATGGTAT+AGG - chr5.3:10231528-10231547 MS.gene047670:intron 30.0%
TAATGAAAATCTGTTGAAGG+AGG - chr5.3:10231234-10231253 MS.gene047670:intron 30.0%
TGTGAAGAAGATACATCAAA+GGG - chr5.3:10232290-10232309 MS.gene047670:CDS 30.0%
! AGTGTTGCTCTGATTTATTA+TGG - chr5.3:10231522-10231541 MS.gene047670:intron 30.0%
! ATAGAGTTGATTCTCCAATT+TGG - chr5.3:10231587-10231606 MS.gene047670:intron 30.0%
! CCAATTTGGAATTGAAATTG+TGG - chr5.3:10231601-10231620 MS.gene047670:intron 30.0%
! TTGTGATTATGCAGAAGTAT+AGG - chr5.3:10232192-10232211 MS.gene047670:intron 30.0%
!! AAAAGTTGGGTTGATGAAAA+TGG - chr5.3:10230960-10230979 MS.gene047670:intron 30.0%
!!! ATCTTTTCCCTAATTTGCTT+AGG + chr5.3:10232009-10232028 None:intergenic 30.0%
!!! TTTTTTTGCAATCAGCAAGA+TGG + chr5.3:10231918-10231937 None:intergenic 30.0%
AATTAGGGAAAAGATGCAAG+TGG - chr5.3:10232014-10232033 MS.gene047670:intron 35.0%
AGTCATGGAAATTCAAAGAG+TGG - chr5.3:10231295-10231314 MS.gene047670:intron 35.0%
GTTGAAGTGCATCAACAAAT+CGG + chr5.3:10231441-10231460 None:intergenic 35.0%
GTTGTTGAGGAAATGAGAAA+CGG + chr5.3:10230679-10230698 None:intergenic 35.0%
TATTGTCACTCACTTGCAAA+TGG + chr5.3:10232068-10232087 None:intergenic 35.0%
TGATGACTTAGTTCATAGCT+TGG - chr5.3:10230740-10230759 MS.gene047670:CDS 35.0%
TTGATCTTGAGCCATATACA+AGG + chr5.3:10232270-10232289 None:intergenic 35.0%
! ACAAGCTAAGAGCTTTAGTT+TGG - chr5.3:10231261-10231280 MS.gene047670:intron 35.0%
! ACAATGAAGGTGATGATGAT+AGG - chr5.3:10231167-10231186 MS.gene047670:intron 35.0%
! AGGAAATGAGAAACGGTTTT+TGG + chr5.3:10230672-10230691 None:intergenic 35.0%
! GAAATTGTGGGTCTTGTATT+GGG - chr5.3:10231614-10231633 MS.gene047670:intron 35.0%
! TGAAATTGTGGGTCTTGTAT+TGG - chr5.3:10231613-10231632 MS.gene047670:intron 35.0%
AAGATGAGCAATCAGATTGC+AGG - chr5.3:10232417-10232436 MS.gene047670:CDS 40.0%
AAGCCATGGAAGAAACAGTA+TGG - chr5.3:10232388-10232407 MS.gene047670:CDS 40.0%
AATCTGGATTACCTGCAGTT+AGG - chr5.3:10231647-10231666 MS.gene047670:CDS 40.0%
ACCATCATTAAGGAGGAGTA+TGG + chr5.3:10230814-10230833 None:intergenic 40.0%
ACCTGCAGTTAGGAAATATG+TGG - chr5.3:10231657-10231676 MS.gene047670:CDS 40.0%
AGCAATCAGATTGCAGGAAT+TGG - chr5.3:10232423-10232442 MS.gene047670:CDS 40.0%
AGCCACTCCTAAGCAAATTA+GGG - chr5.3:10231999-10232018 MS.gene047670:intron 40.0%
ATTCCCAGTTTCGTCAATTC+AGG - chr5.3:10232229-10232248 MS.gene047670:intron 40.0%
CAGGAATTGGAAAAGTGATC+AGG - chr5.3:10232436-10232455 MS.gene047670:CDS 40.0%
CGTATTAACCATGGATGGTT+TGG + chr5.3:10232105-10232124 None:intergenic 40.0%
GAATCCCACTCTTGTGTATA+GGG - chr5.3:10231806-10231825 MS.gene047670:CDS 40.0%
GGAAATTCAAAGAGTGGTGA+TGG - chr5.3:10231301-10231320 MS.gene047670:intron 40.0%
GTGTTACAGAAGAGTAATGG+TGG - chr5.3:10231193-10231212 MS.gene047670:intron 40.0%
GTTGTAAGATGCAGATCAGA+TGG + chr5.3:10231769-10231788 None:intergenic 40.0%
TCCACATATTTCCTAACTGC+AGG + chr5.3:10231661-10231680 None:intergenic 40.0%
TCCATACTCCTCCTTAATGA+TGG - chr5.3:10230810-10230829 MS.gene047670:CDS 40.0%
TGATCCCTATACACAAGAGT+GGG + chr5.3:10231813-10231832 None:intergenic 40.0%
TGGTTTGAACAACGTTGTTG+AGG + chr5.3:10230692-10230711 None:intergenic 40.0%
TTACAGAAGAGTAATGGTGG+AGG - chr5.3:10231196-10231215 MS.gene047670:intron 40.0%
TTGATCCCTATACACAAGAG+TGG + chr5.3:10231814-10231833 None:intergenic 40.0%
! CATCCATACTGTTTCTTCCA+TGG + chr5.3:10232394-10232413 None:intergenic 40.0%
! TAAGGAGGAGTATGGAAAGA+GGG + chr5.3:10230806-10230825 None:intergenic 40.0%
! TACAGAAGAGTAATGGTGGA+GGG - chr5.3:10231197-10231216 MS.gene047670:intron 40.0%
! TTAAGGAGGAGTATGGAAAG+AGG + chr5.3:10230807-10230826 None:intergenic 40.0%
!! AAGTTTCTGAGACATGTCGT+TGG + chr5.3:10230712-10230731 None:intergenic 40.0%
!! AATGGTGGAGGGGTATTTAT+GGG - chr5.3:10231208-10231227 MS.gene047670:intron 40.0%
!! TAATGGTGGAGGGGTATTTA+TGG - chr5.3:10231207-10231226 MS.gene047670:intron 40.0%
!! TTCCCTAATTTGCTTAGGAG+TGG + chr5.3:10232004-10232023 None:intergenic 40.0%
!!! AGAAACGGTTTTTGGAACAG+AGG + chr5.3:10230664-10230683 None:intergenic 40.0%
AAGATGCAGATCAGATGGCT+TGG + chr5.3:10231764-10231783 None:intergenic 45.0%
ACAACTGAGACAACCACTAC+AGG - chr5.3:10231784-10231803 MS.gene047670:CDS 45.0%
AGAGTTCCAGGAAACAAAGG+AGG - chr5.3:10231392-10231411 MS.gene047670:intron 45.0%
AGCAGAGTTCCAGGAAACAA+AGG - chr5.3:10231389-10231408 MS.gene047670:intron 45.0%
AGGGAAAAGATGCAAGTGGA+TGG - chr5.3:10232018-10232037 MS.gene047670:intron 45.0%
CAGCCACTCCTAAGCAAATT+AGG - chr5.3:10231998-10232017 MS.gene047670:intron 45.0%
CCTCCTGAATTGACGAAACT+GGG + chr5.3:10232235-10232254 None:intergenic 45.0%
CTCAAACTCCAAACCATCCA+TGG - chr5.3:10232094-10232113 MS.gene047670:CDS 45.0%
GGAATCCCACTCTTGTGTAT+AGG - chr5.3:10231805-10231824 MS.gene047670:CDS 45.0%
GTTCAAGGTCTTTCAAGCCA+TGG - chr5.3:10232374-10232393 MS.gene047670:CDS 45.0%
GTTGATGCACTTCAACAGCT+TGG - chr5.3:10231445-10231464 MS.gene047670:intron 45.0%
! ACAGAAGAGTAATGGTGGAG+GGG - chr5.3:10231198-10231217 MS.gene047670:intron 45.0%
! ATTGTGGGTCTTGTATTGGG+TGG - chr5.3:10231617-10231636 MS.gene047670:intron 45.0%
! TCAGAGTCTGTTTCTCCACA+GGG - chr5.3:10232320-10232339 MS.gene047670:CDS 45.0%
! TTGGTGTCTGAAGTGAGTCA+TGG - chr5.3:10231280-10231299 MS.gene047670:intron 45.0%
! TTGTGGGTCTTGTATTGGGT+GGG - chr5.3:10231618-10231637 MS.gene047670:intron 45.0%
!! AAGAGTGGTGATGGTAGTTC+TGG - chr5.3:10231310-10231329 MS.gene047670:intron 45.0%
!!! ATAAAAAAAAATGTTTTTTT+TGG - chr5.3:10231140-10231159 MS.gene047670:intron 5.0%
AACCTTTGCAGCAGAGTTCC+AGG - chr5.3:10231380-10231399 MS.gene047670:intron 50.0%
ACAGATCCACCAAGGAGAAG+AGG + chr5.3:10232356-10232375 None:intergenic 50.0%
AGGGTGTGTATGAGCCTAAC+TGG - chr5.3:10231960-10231979 MS.gene047670:intron 50.0%
CAAGAGTGGGATTCCTGTAG+TGG + chr5.3:10231800-10231819 None:intergenic 50.0%
CACCCTACATAGCCTGTGTA+CGG + chr5.3:10231946-10231965 None:intergenic 50.0%
CCAAGGAGAAGAGGAGTAAG+AGG + chr5.3:10232347-10232366 None:intergenic 50.0%
CCCAGTTTCGTCAATTCAGG+AGG - chr5.3:10232232-10232251 MS.gene047670:intron 50.0%
CCTCTTACTCCTCTTCTCCT+TGG - chr5.3:10232344-10232363 MS.gene047670:CDS 50.0%
CTTACTCCTCTTCTCCTTGG+TGG - chr5.3:10232347-10232366 MS.gene047670:CDS 50.0%
GAACTCTGCTGCAAAGGTTG+CGG + chr5.3:10231379-10231398 None:intergenic 50.0%
GACCGTACACAGGCTATGTA+GGG - chr5.3:10231941-10231960 MS.gene047670:intron 50.0%
GACCTTGAACAGATCCACCA+AGG + chr5.3:10232364-10232383 None:intergenic 50.0%
GATGCACTTCAACAGCTTGG+TGG - chr5.3:10231448-10231467 MS.gene047670:intron 50.0%
GCCTCCTGAATTGACGAAAC+TGG + chr5.3:10232236-10232255 None:intergenic 50.0%
GGATGAGTTCAGCTCAGCTA+TGG - chr5.3:10231019-10231038 MS.gene047670:intron 50.0%
TGACCGTACACAGGCTATGT+AGG - chr5.3:10231940-10231959 MS.gene047670:intron 50.0%
TTCCTGGAACTCTGCTGCAA+AGG + chr5.3:10231385-10231404 None:intergenic 50.0%
! CTCAGAGTCTGTTTCTCCAC+AGG - chr5.3:10232319-10232338 MS.gene047670:CDS 50.0%
! CTCCTTGGTGGATCTGTTCA+AGG - chr5.3:10232359-10232378 MS.gene047670:CDS 50.0%
! TGTGGGTCTTGTATTGGGTG+GGG - chr5.3:10231619-10231638 MS.gene047670:intron 50.0%
AGAGGAGTAAGAGGACCCTG+TGG + chr5.3:10232338-10232357 None:intergenic 55.0%
! CAACAGCTTGGTGGAGCACA+TGG - chr5.3:10231457-10231476 MS.gene047670:intron 55.0%
! CCAGCACCTCCTTTGTTTCC+TGG + chr5.3:10231401-10231420 None:intergenic 55.0%
! CCAGGAAACAAAGGAGGTGC+TGG - chr5.3:10231398-10231417 MS.gene047670:intron 55.0%
! GTGGGTCTTGTATTGGGTGG+GGG - chr5.3:10231620-10231639 MS.gene047670:intron 55.0%
! TGGGTCTTGTATTGGGTGGG+GGG - chr5.3:10231621-10231640 MS.gene047670:intron 55.0%
!! ACAAAGGAGGTGCTGGTCGT+CGG - chr5.3:10231405-10231424 MS.gene047670:intron 55.0%
ATTGGGTGGGGGGAGCAATC+TGG - chr5.3:10231631-10231650 MS.gene047670:CDS 60.0%
CTCTGCTGCAAAGGTTGCGG+CGG + chr5.3:10231376-10231395 None:intergenic 60.0%
TGCAAAGGTTGCGGCGGCTG+AGG + chr5.3:10231370-10231389 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 10230624 10232481 10230624 ID=MS.gene047670
chr5.3 mRNA 10230624 10232481 10230624 ID=MS.gene047670.t1;Parent=MS.gene047670
chr5.3 exon 10232274 10232481 10232274 ID=MS.gene047670.t1.exon1;Parent=MS.gene047670.t1
chr5.3 CDS 10232274 10232481 10232274 ID=cds.MS.gene047670.t1;Parent=MS.gene047670.t1
chr5.3 exon 10232046 10232173 10232046 ID=MS.gene047670.t1.exon2;Parent=MS.gene047670.t1
chr5.3 CDS 10232046 10232173 10232046 ID=cds.MS.gene047670.t1;Parent=MS.gene047670.t1
chr5.3 exon 10231627 10231939 10231627 ID=MS.gene047670.t1.exon3;Parent=MS.gene047670.t1
chr5.3 CDS 10231627 10231939 10231627 ID=cds.MS.gene047670.t1;Parent=MS.gene047670.t1
chr5.3 exon 10231031 10231107 10231031 ID=MS.gene047670.t1.exon4;Parent=MS.gene047670.t1
chr5.3 CDS 10231031 10231107 10231031 ID=cds.MS.gene047670.t1;Parent=MS.gene047670.t1
chr5.3 exon 10230624 10230899 10230624 ID=MS.gene047670.t1.exon5;Parent=MS.gene047670.t1
chr5.3 CDS 10230624 10230899 10230624 ID=cds.MS.gene047670.t1;Parent=MS.gene047670.t1
Gene Sequence

>MS.gene047670

ATGGAACAACAACAATTGAACTTAGATTTGACTTTAGCCTCTGTTCCAAAAACCGTTTCTCATTTCCTCAACAACGTTGTTCAAACCAACGACATGTCTCAGAAACTTTCAATGCTTGATGACTTAGTTCATAGCTTGGAAGAAGAAATGAAGAAAGTTCTTGCTTTCAAACGTGAACTCCCTCTTTCCATACTCCTCCTTAATGATGGTAACTAATTTTCTAATTAATTTTTGTGGTATTTCTTGTTTTTTGGATTTAACCTTTTTCTTTTTTGTTAATTTTTTATTTTTGCTGTTAATTGATGTAGCTATAGCAAGATTGAATGATGAAAAAGAAAAAGTTGGGTTGATGAAAATGGAAGATTTGAAAGAAAACTGTGATAATAAGAAGAATTGGATGAGTTCAGCTCAGCTATGGACTAATCAAACAAAAACGGTAATTTTAATATTTTTTTAGAAATTAGTAAATTACCTTTTTTTTAATTGTGATTTTTGTTTATTGAAGTGAGATTTGAGATAAAAAAAAATGTTTTTTTTGGTAGAACAATGAAGGTGATGATGATAGGATTGTGTTACAGAAGAGTAATGGTGGAGGGGTATTTATGGGATTTAATGAAAATCTGTTGAAGGAGGTTTCACAAGCTAAGAGCTTTAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCAAAGAGTGGTGATGGTAGTTCTGGATCGTCTTTGTTGCGTGTTGAGATACAGAATCAACCTCAGCCGCCGCAACCTTTGCAGCAGAGTTCCAGGAAACAAAGGAGGTGCTGGTCGTCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGGTAAATTGTTTTTGTTCAGATTGATTGTTAATTAGTTGTGTTAAGTGTTGCTCTGATTTATTATGGTATAGGAATTTTCTTAGTGTCTATTTTGTATTGGATTTGGTAATAGAGTTGATTCTCCAATTTGGAATTGAAATTGTGGGTCTTGTATTGGGTGGGGGGAGCAATCTGGATTACCTGCAGTTAGGAAATATGTGGATTTAGTGTATTTAATCAATCTTAGTCGTTGTATGGATATCATACGATTTTATAGTTGTGTAAAATAGTTCAGCTTGAAATCCAAGCCATCTGATCTGCATCTTACAACTGAGACAACCACTACAGGAATCCCACTCTTGTGTATAGGGATCAAGATTACATGACATGTTATTAGGGATTAGTATAGGCACCTATTTGTTATAACTTAGAACTGTTTGATTAAGATTGGAGGTTTCCATCTTGCTGATTGCAAAAAAATTTGACCGTACACAGGCTATGTAGGGTGTGTATGAGCCTAACTGGTTTTCTTTTTTGTAGCAGCCACTCCTAAGCAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAGTGAGTGACAATATTTCATCTCAAACTCCAAACCATCCATGGTTAATACGATTATTAGTTTCTTCGTATTAATTTGATTCTTTTGTTATGTCATGTCAAGCAATTGATGTAGCACATTTGTGATTATGCAGAAGTATAGGCTTCATGTTAGAAGATTCCCAGTTTCGTCAATTCAGGAGGCTAATAAGTTAGCCTTGTATATGGCTCAAGATCAATGTGAAGAAGATACATCAAAGGGAAACTTCTCAGAGTCTGTTTCTCCACAGGGTCCTCTTACTCCTCTTCTCCTTGGTGGATCTGTTCAAGGTCTTTCAAGCCATGGAAGAAACAGTATGGATGCTGAAGATGAGCAATCAGATTGCAGGAATTGGAAAAGTGATCAGGAGCAGCAGCATGAAGCTGAATAA
Protein sequence

>MS.gene047670.t1

MEQQQLNLDLTLASVPKTVSHFLNNVVQTNDMSQKLSMLDDLVHSLEEEMKKVLAFKRELPLSILLLNDAIARLNDEKEKVGLMKMEDLKENCDNKKNWMSSAQLWTNQTKTNNEGDDDRIVLQKSNGGGVFMGFNENLLKEVSQAKSFSLVSEVSHGNSKSGDGSSGSSLLRVEIQNQPQPPQPLQQSSRKQRRCWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIQEANKLALYMAQDQCEEDTSKGNFSESVSPQGPLTPLLLGGSVQGLSSHGRNSMDAEDEQSDCRNWKSDQEQQHEAE