Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047749.t1 | XP_003611934.1 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 1.20E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047749.t1 | Q94A43 | 64.1 | 301 | 82 | 12 | 29 | 323 | 36 | 316 | 1.2e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047749.t1 | G7KC60 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 8.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene047749.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047749.t1 | MTR_5g019550 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| MS.gene047749.t1 | MTR_5g019550 | 98.326 | 239 | 4 | 0 | 85 | 323 | 1 | 239 | 2.45e-170 | 472 |
| MS.gene047749.t1 | MTR_3g111680 | 54.242 | 330 | 119 | 8 | 2 | 323 | 8 | 313 | 1.63e-80 | 247 |
| MS.gene047749.t1 | MTR_1g021990 | 37.855 | 317 | 112 | 8 | 9 | 323 | 14 | 247 | 3.77e-49 | 164 |
| MS.gene047749.t1 | MTR_2g075410 | 43.305 | 351 | 133 | 12 | 6 | 322 | 3 | 321 | 1.53e-36 | 134 |
| MS.gene047749.t1 | MTR_2g075400 | 42.197 | 346 | 137 | 12 | 6 | 322 | 3 | 314 | 1.09e-32 | 127 |
| MS.gene047749.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.90e-14 | 73.9 |
| MS.gene047749.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.95e-14 | 74.3 |
| MS.gene047749.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 2.16e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047749.t1 | AT1G75080 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 1.93e-93 | 281 |
| MS.gene047749.t1 | AT1G75080 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 1.93e-93 | 281 |
| MS.gene047749.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 44 | 355 | 1.10e-91 | 277 |
| MS.gene047749.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene047749.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene047749.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene047749.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene047749.t1 | AT3G50750 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.31e-76 | 236 |
| MS.gene047749.t1 | AT4G36780 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.68e-61 | 197 |
| MS.gene047749.t1 | AT1G78700 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.51e-44 | 155 |
| MS.gene047749.t1 | AT4G18890 | 40.625 | 320 | 141 | 11 | 6 | 319 | 3 | 279 | 9.82e-33 | 123 |
| MS.gene047749.t1 | AT2G45880 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.28e-15 | 75.9 |
| MS.gene047749.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.55e-14 | 73.6 |
| MS.gene047749.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.65e-14 | 73.6 |
| MS.gene047749.t1 | AT5G45300 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.36e-13 | 72.0 |
Find 109 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5.1:+11318163 | MS.gene047749:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5.1:-11319625 | None:intergenic |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5.1:-11319349 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5.1:-11319511 | None:intergenic |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5.1:-11319106 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5.1:-11319422 | None:intergenic |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5.1:+11319096 | MS.gene047749:CDS |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5.1:-11318214 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5.1:-11319127 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5.1:-11319100 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5.1:-11319184 | None:intergenic |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.429948 | 5.1:+11319802 | MS.gene047749:CDS |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5.1:+11318248 | MS.gene047749:CDS |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5.1:-11319310 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5.1:-11319466 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5.1:+11318079 | MS.gene047749:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5.1:+11318244 | MS.gene047749:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5.1:-11319603 | None:intergenic |
| GAGAATTCATGAGGTAGGAA+TGG | 0.471286 | 5.1:+11319774 | MS.gene047749:CDS |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5.1:-11319266 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5.1:-11319214 | None:intergenic |
| TGGTGCAGAGGTAGCGAAAA+GGG | 0.473562 | 5.1:-11319446 | None:intergenic |
| GGTGAGAGAATTCATGAGGT+AGG | 0.475725 | 5.1:+11319769 | MS.gene047749:CDS |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5.1:-11319581 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5.1:+11318064 | None:intergenic |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5.1:+11319311 | MS.gene047749:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5.1:-11319309 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5.1:+11319796 | MS.gene047749:CDS |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5.1:-11319160 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.485353 | 5.1:-11319645 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.486116 | 5.1:-11319644 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5.1:-11319498 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5.1:+11319519 | MS.gene047749:CDS |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5.1:+11318070 | None:intergenic |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5.1:-11319208 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5.1:+11319700 | MS.gene047749:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5.1:-11319327 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5.1:-11319361 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5.1:-11319407 | None:intergenic |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5.1:-11319283 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5.1:+11319097 | MS.gene047749:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5.1:-11319265 | None:intergenic |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5.1:+11319676 | MS.gene047749:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5.1:-11318098 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5.1:+11319533 | MS.gene047749:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5.1:-11319272 | None:intergenic |
| ATGGTGCAGAGGTAGCGAAA+AGG | 0.528695 | 5.1:-11319447 | None:intergenic |
| TGAGGTAGGAATGGAAGAGT+TGG | 0.534793 | 5.1:+11319783 | MS.gene047749:CDS |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5.1:+11318080 | MS.gene047749:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5.1:-11319475 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5.1:-11319506 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5.1:-11319220 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5.1:-11319499 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5.1:+11318265 | MS.gene047749:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5.1:-11319176 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5.1:-11319497 | None:intergenic |
| GCTTACTCTAGGGTTTGGTA+AGG | 0.545192 | 5.1:+11319807 | MS.gene047749:CDS |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5.1:+11319536 | MS.gene047749:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5.1:-11319598 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5.1:-11319338 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5.1:+11319232 | MS.gene047749:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5.1:+11319743 | MS.gene047749:CDS |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5.1:+11319537 | MS.gene047749:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5.1:-11319604 | None:intergenic |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5.1:+11319797 | MS.gene047749:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5.1:-11319582 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5.1:+11318178 | MS.gene047749:CDS |
| TGAATTCTCTCACCTTCCCA+CGG | 0.573723 | 5.1:-11319760 | None:intergenic |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5.1:+11319636 | MS.gene047749:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5.1:+11319228 | MS.gene047749:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5.1:-11319279 | None:intergenic |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5.1:+11319529 | MS.gene047749:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5.1:-11319474 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5.1:+11319748 | MS.gene047749:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5.1:-11319238 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5.1:-11319183 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5.1:-11319503 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5.1:-11319595 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5.1:-11319326 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5.1:+11318095 | MS.gene047749:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5.1:-11319207 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5.1:-11319229 | None:intergenic |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5.1:+11319565 | MS.gene047749:CDS |
| GTATGAATGAAGCCATGCAA+TGG | 0.607575 | 5.1:+11319668 | MS.gene047749:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5.1:-11319680 | None:intergenic |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5.1:-11319264 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5.1:-11319228 | None:intergenic |
| GTGCAGAGGTAGCGAAAAGG+GGG | 0.619204 | 5.1:-11319444 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5.1:-11319166 | None:intergenic |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5.1:+11319694 | MS.gene047749:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5.1:-11319496 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5.1:+11318282 | MS.gene047749:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5.1:-11319291 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5.1:-11319408 | None:intergenic |
| GGTGCAGAGGTAGCGAAAAG+GGG | 0.633761 | 5.1:-11319445 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5.1:-11319322 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5.1:+11319522 | MS.gene047749:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5.1:-11319458 | None:intergenic |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5.1:-11319602 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5.1:-11318083 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5.1:+11319744 | MS.gene047749:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5.1:+11318067 | None:intergenic |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5.1:-11319190 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5.1:+11319100 | MS.gene047749:CDS |
| GGAAGGTGAGAGAATTCATG+AGG | 0.688457 | 5.1:+11319765 | MS.gene047749:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5.1:-11318095 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5.1:-11319325 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5.1:-11319358 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.720256 | 5.1:-11319643 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5.1:11318609-11318628 | None:intergenic | 10.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5.1:11319606-11319625 | None:intergenic | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5.1:11319605-11319624 | None:intergenic | 20.0% |
| !!! | TCGGATATAAAGTATTAAAT+TGG | + | chr5.1:11318974-11318993 | MS.gene047749:intron | 20.0% |
| ! | AATCGAAGTTAAATCAATTC+TGG | - | chr5.1:11318510-11318529 | None:intergenic | 25.0% |
| ! | AATCGATCTTATAAGAAACT+TGG | + | chr5.1:11318403-11318422 | MS.gene047749:intron | 25.0% |
| ! | CATAAGCTACTAAATTGAAA+AGG | + | chr5.1:11318655-11318674 | MS.gene047749:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5.1:11319067-11319086 | MS.gene047749:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5.1:11319607-11319626 | None:intergenic | 25.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5.1:11318217-11318236 | None:intergenic | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5.1:11319066-11319085 | MS.gene047749:intron | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5.1:11318509-11318528 | MS.gene047749:intron | 25.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5.1:11319097-11319116 | MS.gene047749:CDS | 30.0% | |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5.1:11319601-11319620 | None:intergenic | 30.0% | |
| CTGTTTAAGTCACATTAAGT+CGG | + | chr5.1:11318955-11318974 | MS.gene047749:intron | 30.0% | |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5.1:11318649-11318668 | None:intergenic | 30.0% | |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5.1:11319411-11319430 | None:intergenic | 30.0% |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5.1:11319410-11319429 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACATG+TGG | + | chr5.1:11318709-11318728 | MS.gene047749:intron | 30.0% |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5.1:11319724-11319743 | MS.gene047749:CDS | 30.0% |
| AGATGGTACTACTTATCGAA+AGG | + | chr5.1:11318282-11318301 | MS.gene047749:CDS | 35.0% | |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5.1:11318163-11318182 | MS.gene047749:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5.1:11319130-11319149 | None:intergenic | 35.0% | |
| GAGACCATTACCAAATGAAA+TGG | + | chr5.1:11319096-11319115 | MS.gene047749:CDS | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5.1:11319647-11319666 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5.1:11319294-11319313 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5.1:11318112-11318131 | None:intergenic | 35.0% |
| !! | CTTGGTTTTTGTGATCTAAG+TGG | + | chr5.1:11318421-11318440 | MS.gene047749:intron | 35.0% |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5.1:11319797-11319816 | MS.gene047749:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5.1:11319163-11319182 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5.1:11319268-11319287 | None:intergenic | 40.0% | |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5.1:11319598-11319617 | None:intergenic | 40.0% | |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5.1:11319329-11319348 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5.1:11319646-11319665 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5.1:11319100-11319119 | MS.gene047749:CDS | 40.0% | |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5.1:11319103-11319122 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr5.1:11318785-11318804 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5.1:11319286-11319305 | None:intergenic | 40.0% | |
| GAGAATTCATGAGGTAGGAA+TGG | + | chr5.1:11319774-11319793 | MS.gene047749:CDS | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr5.1:11318788-11318807 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr5.1:11318796-11318815 | MS.gene047749:intron | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5.1:11319648-11319667 | None:intergenic | 40.0% | |
| GTATGAATGAAGCCATGCAA+TGG | + | chr5.1:11319668-11319687 | MS.gene047749:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr5.1:11318762-11318781 | None:intergenic | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5.1:11319282-11319301 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5.1:11319312-11319331 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5.1:11318178-11318197 | MS.gene047749:CDS | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5.1:11318244-11318263 | MS.gene047749:CDS | 40.0% |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5.1:11319376-11319395 | None:intergenic | 40.0% |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5.1:11318101-11318120 | None:intergenic | 40.0% |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5.1:11319187-11319206 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5.1:11319186-11319205 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5.1:11319267-11319286 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5.1:11319311-11319330 | MS.gene047749:CDS | 45.0% | |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5.1:11319519-11319538 | MS.gene047749:CDS | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5.1:11319313-11319332 | None:intergenic | 45.0% | |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5.1:11319217-11319236 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5.1:11319169-11319188 | None:intergenic | 45.0% | |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5.1:11319364-11319383 | None:intergenic | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5.1:11319796-11319815 | MS.gene047749:CDS | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5.1:11319269-11319288 | None:intergenic | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5.1:11319328-11319347 | None:intergenic | 45.0% | |
| GGAAGGTGAGAGAATTCATG+AGG | + | chr5.1:11319765-11319784 | MS.gene047749:CDS | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5.1:11319109-11319128 | None:intergenic | 45.0% | |
| GGTGAGAGAATTCATGAGGT+AGG | + | chr5.1:11319769-11319788 | MS.gene047749:CDS | 45.0% | |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5.1:11318265-11318284 | MS.gene047749:CDS | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5.1:11319241-11319260 | None:intergenic | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5.1:11319763-11319782 | None:intergenic | 45.0% | |
| TGAGGTAGGAATGGAAGAGT+TGG | + | chr5.1:11319783-11319802 | MS.gene047749:CDS | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5.1:11319565-11319584 | MS.gene047749:CDS | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr5.1:11318768-11318787 | None:intergenic | 45.0% |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5.1:11319330-11319349 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5.1:11319211-11319230 | None:intergenic | 45.0% |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5.1:11319210-11319229 | None:intergenic | 45.0% |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5.1:11319509-11319528 | None:intergenic | 45.0% |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5.1:11318248-11318267 | MS.gene047749:CDS | 45.0% |
| !! | GCTTACTCTAGGGTTTGGTA+AGG | + | chr5.1:11319807-11319826 | MS.gene047749:CDS | 45.0% |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5.1:11319802-11319821 | MS.gene047749:CDS | 45.0% |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5.1:11319179-11319198 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr5.1:11318775-11318794 | MS.gene047749:intron | 50.0% | |
| ATGGTGCAGAGGTAGCGAAA+AGG | - | chr5.1:11319450-11319469 | None:intergenic | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5.1:11319325-11319344 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5.1:11319361-11319380 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5.1:11319352-11319371 | None:intergenic | 50.0% | |
| GCATCTGACTCATCGCATTC+TGG | - | chr5.1:11319514-11319533 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5.1:11319275-11319294 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5.1:11319477-11319496 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5.1:11319425-11319444 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5.1:11319223-11319242 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5.1:11319700-11319719 | MS.gene047749:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5.1:11319683-11319702 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5.1:11319522-11319541 | MS.gene047749:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr5.1:11318780-11318799 | None:intergenic | 50.0% | |
| TGGTGCAGAGGTAGCGAAAA+GGG | - | chr5.1:11319449-11319468 | None:intergenic | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5.1:11319499-11319518 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5.1:11319501-11319520 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5.1:11319506-11319525 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5.1:11319500-11319519 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5.1:11319502-11319521 | None:intergenic | 50.0% |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5.1:11319232-11319251 | MS.gene047749:CDS | 55.0% | |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5.1:11318095-11318114 | MS.gene047749:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5.1:11319193-11319212 | None:intergenic | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5.1:11319676-11319695 | MS.gene047749:CDS | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5.1:11319636-11319655 | MS.gene047749:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5.1:11319694-11319713 | MS.gene047749:CDS | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5.1:11319478-11319497 | None:intergenic | 55.0% | |
| GGTGCAGAGGTAGCGAAAAG+GGG | - | chr5.1:11319448-11319467 | None:intergenic | 55.0% | |
| GTGCAGAGGTAGCGAAAAGG+GGG | - | chr5.1:11319447-11319466 | None:intergenic | 55.0% | |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5.1:11319628-11319647 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5.1:11319469-11319488 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5.1:11319231-11319250 | None:intergenic | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5.1:11319533-11319552 | MS.gene047749:CDS | 55.0% |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5.1:11319492-11319511 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5.1:11319529-11319548 | MS.gene047749:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5.1:11319537-11319556 | MS.gene047749:CDS | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5.1:11319232-11319251 | None:intergenic | 55.0% |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5.1:11318098-11318117 | None:intergenic | 55.0% |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5.1:11319341-11319360 | None:intergenic | 55.0% |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5.1:11319748-11319767 | MS.gene047749:CDS | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5.1:11319743-11319762 | MS.gene047749:CDS | 60.0% | |
| CAGAGGTAGCGAAAAGGGGG+TGG | - | chr5.1:11319444-11319463 | None:intergenic | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5.1:11319228-11319247 | MS.gene047749:CDS | 60.0% | |
| GAAAAGGGGGTGGCGAAACG+TGG | - | chr5.1:11319434-11319453 | None:intergenic | 60.0% | |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5.1:11319584-11319603 | None:intergenic | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5.1:11319744-11319763 | MS.gene047749:CDS | 60.0% | |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5.1:11319536-11319555 | MS.gene047749:CDS | 60.0% |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5.1:11319461-11319480 | None:intergenic | 60.0% |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5.1:11318079-11318098 | MS.gene047749:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5.1:11319585-11319604 | None:intergenic | 65.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5.1:11318086-11318105 | None:intergenic | 70.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5.1:11318080-11318099 | MS.gene047749:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 11318079 | 11319834 | 11318079 | ID=MS.gene047749 |
| chr5.1 | mRNA | 11318079 | 11319834 | 11318079 | ID=MS.gene047749.t1;Parent=MS.gene047749 |
| chr5.1 | exon | 11318079 | 11318303 | 11318079 | ID=MS.gene047749.t1.exon1;Parent=MS.gene047749.t1 |
| chr5.1 | CDS | 11318079 | 11318303 | 11318079 | ID=cds.MS.gene047749.t1;Parent=MS.gene047749.t1 |
| chr5.1 | exon | 11319088 | 11319834 | 11319088 | ID=MS.gene047749.t1.exon2;Parent=MS.gene047749.t1 |
| chr5.1 | CDS | 11319088 | 11319834 | 11319088 | ID=cds.MS.gene047749.t1;Parent=MS.gene047749.t1 |
| Gene Sequence |
| Protein sequence |
