AlfalfaGEDB | MS.gene047757

M. sativa cultivar XinJiangDaYe / MS.gene047757

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047757.t1	XP_003611950.1	85.6	208	29	1	1	208	1	207	3.70E-86	327.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047757.t1	O23208	51.7	211	91	7	7	210	10	216	1.0e-39	164.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047757.t1	G7KC76	85.6	208	29	1	1	208	1	207	2.7e-86	327.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene047757.t1	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047757.t1	MTR_5g019680	93.269	208	13	1	1	208	1	207	1.03e-134	376
MS.gene047757.t1	MTR_5g019650	81.982	222	27	3	1	210	1	221	1.98e-118	335
MS.gene047757.t1	MTR_4g107650	38.776	147	73	3	31	160	62	208	1.06e-22	94.0
MS.gene047757.t1	MTR_3g086790	60.811	74	29	0	54	127	60	133	5.60e-22	91.7
MS.gene047757.t1	MTR_6g007647	47.273	110	49	2	54	156	33	140	6.33e-22	90.5
MS.gene047757.t1	MTR_6g007647	47.273	110	49	2	54	156	67	174	9.72e-22	90.5
MS.gene047757.t1	MTR_8g089895	56.250	80	35	0	45	124	45	124	1.01e-21	90.9
MS.gene047757.t1	MTR_6g011610	50.505	99	49	0	45	143	87	185	1.50e-20	87.0
MS.gene047757.t1	MTR_6g011610	50.505	99	49	0	45	143	68	166	1.84e-20	86.7
MS.gene047757.t1	MTR_1g061660	45.545	101	55	0	54	154	59	159	2.04e-20	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047757.t1	AT4G36740	52.133	211	91	7	7	210	10	217	1.31e-57	181
MS.gene047757.t1	AT4G36740	52.607	211	89	8	7	210	10	216	5.45e-57	179
MS.gene047757.t1	AT2G18550	45.575	226	101	9	1	210	1	220	6.51e-57	179
MS.gene047757.t1	AT5G66700	46.818	220	103	4	5	210	9	228	9.99e-48	156
MS.gene047757.t1	AT3G01470	33.333	207	108	5	2	178	13	219	3.63e-24	96.7
MS.gene047757.t1	AT1G69780	38.961	154	80	3	2	143	23	174	1.76e-23	95.5
MS.gene047757.t1	AT2G22430	64.789	71	25	0	54	124	62	132	6.79e-22	91.7
MS.gene047757.t1	AT4G40060	63.380	71	26	0	54	124	59	129	7.49e-22	90.9
MS.gene047757.t1	AT5G65310	57.143	77	33	0	43	119	43	119	2.94e-21	89.4
MS.gene047757.t1	AT5G65310	57.143	77	33	0	43	119	61	137	3.40e-21	89.7

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Find 39 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAAACTGCAACTTGTCT+GGG	0.501567	5.1:-11429117	None:intergenic
AACCTTGTTGAGAAATTATT+TGG	0.079303	5.1:-11428815	None:intergenic
AAGCGTAGTAAGAAGAACAA+AGG	0.668285	5.1:+11428949	MS.gene047757:CDS
AAGGAGACACTTCTCAAGAA+TGG	0.492858	5.1:-11429217	None:intergenic
ACCCAAATAATTTCTCAACA+AGG	0.645027	5.1:+11428813	MS.gene047757:CDS
ACCTTGTTGAGAAATTATTT+GGG	0.435398	5.1:-11428814	None:intergenic
ACTGAGACATAAGCATCATT+TGG	0.463969	5.1:-11428770	None:intergenic
AGAGGTATACCTTTGTTTCA+AGG	0.464969	5.1:-11429236	None:intergenic
AGCTACTATTTGGCTCTCGA+AGG	0.571565	5.1:-11430218	None:intergenic
AGTTTGGTTCCAGAATCGAA+GGG	0.690392	5.1:+11429131	MS.gene047757:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTAGTAACGTCAATTT+AGG	+	chr5.1:11429459-11429478	MS.gene047757:intron	30.0%
ACACTAGTAACGTCAATTTA+GGG	+	chr5.1:11429460-11429479	MS.gene047757:intron	30.0%
ACATAACATGAATGATCATG+TGG	-	chr5.1:11429784-11429803	None:intergenic	30.0%
ACCCAAATAATTTCTCAACA+AGG	+	chr5.1:11428813-11428832	MS.gene047757:CDS	30.0%
ATTGTTGGAGAAATGATGAT+TGG	-	chr5.1:11429400-11429419	None:intergenic	30.0%
TCTACTTCATGATAACAAGT+TGG	-	chr5.1:11429978-11429997	None:intergenic	30.0%
TTCATCAATTTCACAATCCA+TGG	+	chr5.1:11430248-11430267	MS.gene047757:CDS	30.0%
TTCTCTCTTTCAACATTTAG+GGG	-	chr5.1:11429588-11429607	None:intergenic	30.0%
AAGCGTAGTAAGAAGAACAA+AGG	+	chr5.1:11428949-11428968	MS.gene047757:CDS	35.0%
ACTGAGACATAAGCATCATT+TGG	-	chr5.1:11428773-11428792	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	11428756	11430395	11428756	ID=MS.gene047757
chr5.1	mRNA	11428756	11430395	11428756	ID=MS.gene047757.t1;Parent=MS.gene047757
chr5.1	exon	11428756	11428834	11428756	ID=MS.gene047757.t1.exon1;Parent=MS.gene047757.t1
chr5.1	CDS	11428756	11428834	11428756	ID=cds.MS.gene047757.t1;Parent=MS.gene047757.t1
chr5.1	exon	11428923	11429248	11428923	ID=MS.gene047757.t1.exon2;Parent=MS.gene047757.t1
chr5.1	CDS	11428923	11429248	11428923	ID=cds.MS.gene047757.t1;Parent=MS.gene047757.t1
chr5.1	exon	11430168	11430395	11430168	ID=MS.gene047757.t1.exon3;Parent=MS.gene047757.t1
chr5.1	CDS	11430168	11430395	11430168	ID=cds.MS.gene047757.t1;Parent=MS.gene047757.t1

Gene Sequence

>MS.gene047757

ATGAATCATCAAGACCAAATGATGCTTATGTCTCAGTTATTCCCAGCTTGTGAATACACCCAAATAATTTCTCAACAAGGTTAGTATCATATTAAATTAATACATAACATTTTATTGTATCATAAAAATTTCTATGAAGTTATAATATTTTTGTTATGTTTTTTTAGGGGAGAAGAAGCTAAAGCCAAGACGCAAGCGTAGTAAGAAGAACAAAGGTGGAGAAAACAGTGCTAACCAAATATTGAACAAAAAGAGGAAATTGAGTGATGAACAAATGAAAATTTTGGAGGAAAATTTTGGAAATGAACATAAACTTGAGTCAGAGAAGAAGGATAGACTTGCAATGGAGCTTGGTTTAGATCCCAGACAAGTTGCAGTTTGGTTCCAGAATCGAAGGGCTAGGTGGAAGAACAAGAAACTTGAAGAAGAGTACTTAACTCTTAAAAAAATTCATGAATCCACCATTCTTGAGAAGTGTCTCCTTGAAACAAAGGTATACCTCTTGCTTCCGCTTCTTATTTAATTTATTATTGCAACTAGATACAATTTTATTAAACTATGTTAACATGTTTTTTAATTAACTATTATTAAAAATTAAAATCAGTGGATTGAATTATAACTTGACATCAAAATTTTAATTTCCAATCATCATTTCTCCAACAATATTATATTACTAGTGTTTTGTTTTTATTTGTCTCAACGCAACACTAGTAACGTCAATTTAGGGCAAGCATGCTACCATGTTTCTTCTCTGGTGGTCTTGATATTTTGTTTATTCACTATATTGTTGTTATAACTTTGTTTAAAAAAGTTGTTTGCATAGTTTAATCCCCTAAATGTTGAAAGAGAGAATAAGCACTGGCATGCAACCGGTTCTTCAGGACAAAGCAAAAAGAAAAGAAACCCCTTGAATGAAAAATGATAAAGTAGAAACTTAGACCCACCACATATGAACGTGCATATGAGCTCTGGGCTCGAAGAAATTAATCCAAGCCGTTCACATTATTAAAGTTCTCACTTCTCAGCCACATGATCATTCATGTTATGTAGATTTTCTTTAAAAAAATGCTAATGATACATAAAATTAAAAGAAATATATAAAAACAAAAACAAGGAACAGCAAAAAAATATCACCTTAAAGACAACAAACAACACTGTTTCTTTCAATTTGTTTCCTAATTCCGTACAATATTTTCTTCATTTTGGACCTTTCTCAAGGCCAACTTGTTATCATGAAGTAGAAACGTGACATACATATGTTCCCAAGTGAAACTCCATTACCCCCTCTAATCAATGTCCTACACCACGTGCATGTCTCTTTCATTATCTTAACCTTTTAATAATCTTTGCTTAGATTAGATCTCATCATCTTAACTCCTAATTACCTTATATGTTCAATTAATATTTTGTAGATGTTGAAGCTAACAGAGCAGCTTTCTGAGGCAGAGAAGGAAATTCAACGCCTTCGAGAGCCAAATAGTAGCTCTAGTACTTCATCAATTTCACAATCCATGGAAGTAGTGGACCCACAATTACTTGATGAATTTGAAGTTAATCATATATATAATGATGATGTGTTTTTCATGCCGGATGCGACATATTACTTCAACGGCCAGGAATGGATTAATCTTTATATCTAA

Protein sequence

>MS.gene047757.t1

MNHQDQMMLMSQLFPACEYTQIISQQGEKKLKPRRKRSKKNKGGENSANQILNKKRKLSDEQMKILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYLTLKKIHESTILEKCLLETKMLKLTEQLSEAEKEIQRLREPNSSSSTSSISQSMEVVDPQLLDEFEVNHIYNDDVFFMPDATYYFNGQEWINLYI