AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04781

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04781.t1 MTR_8g103940 89.302 430 44 2 1 430 71 498 0.0 785
MS.gene04781.t1 MTR_1g108780 69.142 431 130 3 1 428 29 459 0.0 613
MS.gene04781.t1 MTR_1g035460 42.931 389 197 12 1 375 18 395 6.45e-87 270
MS.gene04781.t1 MTR_7g050710 37.143 280 137 9 3 262 47 307 9.57e-46 161
MS.gene04781.t1 MTR_3g098790 34.828 290 158 7 3 280 47 317 4.87e-42 151
MS.gene04781.t1 MTR_7g050590 35.484 279 147 10 1 262 18 280 2.24e-41 149
MS.gene04781.t1 MTR_7g050720 34.386 285 153 10 1 262 42 315 2.53e-38 141
MS.gene04781.t1 MTR_7g050580 35.915 284 118 9 3 262 47 290 1.74e-37 139
MS.gene04781.t1 MTR_5g044670 32.028 281 155 8 3 268 50 309 1.29e-36 137
MS.gene04781.t1 MTR_7g050560 36.131 274 135 10 1 262 45 290 4.41e-35 132
MS.gene04781.t1 MTR_3g061340 31.203 266 139 9 1 258 42 271 3.88e-34 129
MS.gene04781.t1 MTR_3g061340 39.394 99 52 3 332 426 180 274 3.20e-12 67.0
MS.gene04781.t1 MTR_3g061370 29.329 283 138 7 1 261 39 281 6.55e-34 128
MS.gene04781.t1 MTR_1g035570 27.563 439 222 15 1 425 37 393 1.84e-32 127
MS.gene04781.t1 MTR_3g061350 31.095 283 133 10 1 261 42 284 3.35e-32 124
MS.gene04781.t1 MTR_3g061320 29.242 277 141 9 1 261 42 279 2.17e-30 119
MS.gene04781.t1 MTR_3g061320 39.583 96 56 2 332 426 185 279 2.52e-11 64.3
MS.gene04781.t1 MTR_3g061330 30.041 243 122 9 1 228 42 251 8.02e-29 114
MS.gene04781.t1 MTR_3g061310 27.899 276 152 8 1 261 42 285 3.74e-27 110
MS.gene04781.t1 MTR_3g061310 39.583 144 75 6 287 426 150 285 6.00e-17 81.3
MS.gene04781.t1 MTR_1g035490 31.271 291 148 12 149 425 75 327 1.52e-26 109
MS.gene04781.t1 MTR_1g035640 26.580 459 271 18 1 425 37 463 5.35e-26 110
MS.gene04781.t1 MTR_4g119990 30.996 271 152 12 19 270 66 320 3.11e-23 100
MS.gene04781.t1 MTR_3g061290 38.211 123 67 2 1 114 42 164 5.34e-22 93.6
MS.gene04781.t1 MTR_5g070440 27.444 266 135 9 3 262 55 268 7.98e-21 92.0
MS.gene04781.t1 MTR_1g035620 24.444 450 237 17 1 427 41 410 3.26e-20 92.4
MS.gene04781.t1 MTR_1g021270 21.682 535 300 20 3 425 49 576 3.07e-19 90.5
MS.gene04781.t1 MTR_6g061070 23.831 449 287 14 3 426 52 470 3.57e-19 89.7
MS.gene04781.t1 MTR_4g068320 33.898 177 105 6 107 272 224 399 1.24e-18 87.8
MS.gene04781.t1 MTR_4g068320 30.303 132 86 1 3 128 40 171 3.39e-13 71.2
MS.gene04781.t1 MTR_3g005460 24.265 272 142 8 3 261 296 516 3.32e-16 80.9
MS.gene04781.t1 MTR_7g050640 48.387 62 32 0 1 62 45 106 7.18e-16 73.9
MS.gene04781.t1 MTR_3g061300 40.952 105 52 4 325 425 24 122 1.01e-15 73.9
MS.gene04781.t1 MTR_6g043890 27.049 244 162 8 19 256 66 299 1.49e-15 77.8
MS.gene04781.t1 MTR_1g034240 37.391 115 65 4 160 268 285 398 2.67e-15 77.8
MS.gene04781.t1 MTR_1g034240 42.424 66 38 0 3 68 41 106 5.31e-11 64.7
MS.gene04781.t1 MTR_1g021435 24.756 307 184 12 3 266 56 358 5.55e-14 73.6
MS.gene04781.t1 MTR_1g034210 34.677 124 72 5 151 267 242 363 1.02e-13 72.8
MS.gene04781.t1 MTR_1g021400 23.473 311 175 12 3 268 64 356 1.32e-13 72.4
MS.gene04781.t1 MTR_1g021330 24.845 322 190 14 3 279 60 374 2.13e-13 71.6
MS.gene04781.t1 MTR_1g050845 26.715 277 134 10 1 260 41 265 2.62e-13 72.4
MS.gene04781.t1 MTR_1g021440 22.050 322 202 11 3 279 56 373 6.94e-13 70.1
MS.gene04781.t1 MTR_3g005490 25.830 271 130 10 3 265 55 262 3.48e-12 67.0
MS.gene04781.t1 MTR_1g021360 23.297 279 181 9 3 268 216 474 1.04e-11 67.0
MS.gene04781.t1 MTR_1g021410 24.585 301 181 13 3 266 56 347 7.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04781.t1 AT3G18990 33.993 303 157 12 3 265 40 339 8.03e-39 143
MS.gene04781.t1 AT3G18990 33.663 303 158 12 3 265 40 339 7.38e-38 141
MS.gene04781.t1 AT1G49480 38.393 112 61 4 160 265 115 224 1.76e-17 81.6
MS.gene04781.t1 AT1G49480 38.393 112 61 4 160 265 115 224 1.76e-17 81.6
MS.gene04781.t1 AT1G49480 38.393 112 61 4 160 265 115 224 1.76e-17 81.6
MS.gene04781.t1 AT4G01580 44.928 69 38 0 3 71 64 132 2.61e-13 68.6
MS.gene04781.t1 AT3G18960 43.478 69 39 0 3 71 64 132 3.86e-13 68.2
MS.gene04781.t1 AT3G18960 43.478 69 39 0 3 71 27 95 7.24e-13 67.0
MS.gene04781.t1 AT3G18960 43.478 69 39 0 3 71 64 132 7.46e-13 67.8
MS.gene04781.t1 AT1G49475 38.667 75 46 0 3 77 67 141 7.65e-12 64.3
MS.gene04781.t1 AT4G33280 26.071 280 177 11 3 266 57 322 4.25e-11 64.3

Find 61 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAACTTGTCCAAGTTAA+AGG 0.118978 4.2:-1957091 MS.gene04781:intron
GAACAAACTTGTTGAAAATT+TGG 0.135205 4.2:-1957236 MS.gene04781:CDS
CTTGATCATGCTTCACATTT+AGG 0.162093 4.2:+1956939 None:intergenic
TGTCATGACAACAGTGAAAA+AGG 0.224513 4.2:+1956847 None:intergenic
CCTTTAACTTGGACAAGTTT+AGG 0.279816 4.2:+1957091 None:intergenic
TTAATGGAGATGGAATTAAT+TGG 0.309089 4.2:-1956329 MS.gene04781:CDS
GTTTGTAGAGGAAAATAAAT+TGG 0.310756 4.2:-1955523 MS.gene04781:CDS
GGAAGTACATTTGACTAAAA+AGG 0.313078 4.2:-1957434 MS.gene04781:CDS
TACTTTAGTTCAAAATCTAC+TGG 0.361077 4.2:+1956665 None:intergenic
CTCAATTTCTTATGTGGTTG+AGG 0.369014 4.2:+1957163 None:intergenic
CTTCACATTTAGGCATTTAG+TGG 0.383770 4.2:+1956949 None:intergenic
TAATGGAGATGGAATTAATT+GGG 0.397926 4.2:-1956328 MS.gene04781:CDS
AAAACTATCATGTCACATAA+AGG 0.413575 4.2:-1956273 MS.gene04781:intron
CATATTTAACAAGAGTACTT+TGG 0.415158 4.2:-1957299 MS.gene04781:CDS
ACTCAACTTGGTTGACGGTT+CGG 0.425773 4.2:+1955560 None:intergenic
TCTCATTATCCATGACTTGA+AGG 0.426650 4.2:+1956615 None:intergenic
CCAATTCTCAATTTCTTATG+TGG 0.430787 4.2:+1957157 None:intergenic
CTTGTGACACAAGTACTTCT+CGG 0.432076 4.2:+1955644 None:intergenic
AAACCTGTGGCATGTAAGAT+TGG 0.435151 4.2:-1955595 MS.gene04781:CDS
ATATTTGGATTCACAAGGGT+TGG 0.435488 4.2:-1957405 MS.gene04781:CDS
CCACATAAGAAATTGAGAAT+TGG 0.439783 4.2:-1957157 MS.gene04781:CDS
AATTTATTATACCTTTAACT+TGG 0.446187 4.2:+1957080 None:intergenic
CCTGTACTCAACTTGGTTGA+CGG 0.457593 4.2:+1955555 None:intergenic
TAGAATTACCTTGCGGTGGA+AGG 0.460497 4.2:+1956429 None:intergenic
TTTGATAATAATTTGAAAGT+GGG 0.464811 4.2:-1956533 MS.gene04781:CDS
GATTTAGTCTTCTTGCATGT+AGG 0.469068 4.2:+1957205 None:intergenic
CTTGGAATGTTAAACATTGT+GGG 0.475665 4.2:-1956589 MS.gene04781:CDS
TTTGAATCAGTTAATGGAGA+TGG 0.481033 4.2:-1956339 MS.gene04781:intron
ACGCATTATTCTATAGATCA+TGG 0.484415 4.2:-1957370 MS.gene04781:CDS
TTGGCATACCACAGGAAAGA+AGG 0.492460 4.2:-1956018 MS.gene04781:intron
TCATGGATAATGAGAGAACT+TGG 0.492868 4.2:-1956607 MS.gene04781:CDS
ATTTGATAATAATTTGAAAG+TGG 0.495131 4.2:-1956534 MS.gene04781:CDS
TCTGGAGTATTGAGAAACAT+TGG 0.498255 4.2:+1957469 None:intergenic
ACTTGGAATGTTAAACATTG+TGG 0.512866 4.2:-1956590 MS.gene04781:CDS
AACTTGGTTGACGGTTCGGA+TGG 0.514973 4.2:+1955564 None:intergenic
CGTTATCACCCTTCAAGTCA+TGG 0.529744 4.2:-1956624 MS.gene04781:CDS
ACTCCAACCTGTACTCAACT+TGG 0.532809 4.2:+1955548 None:intergenic
TGTAGAGGAAAATAAATTGG+AGG 0.533957 4.2:-1955520 MS.gene04781:CDS
GAGGAAAATAAATTGGAGGA+TGG 0.537388 4.2:-1955516 MS.gene04781:CDS
TCGCCAATCTTACATGCCAC+AGG 0.542280 4.2:+1955592 None:intergenic
CTCATTATCCATGACTTGAA+GGG 0.556492 4.2:+1956616 None:intergenic
AGAATTACCTTGCGGTGGAA+GGG 0.557526 4.2:+1956430 None:intergenic
CCGTCAACCAAGTTGAGTAC+AGG 0.579549 4.2:-1955555 MS.gene04781:CDS
AGGTTGGAGTAAGTTTGTAG+AGG 0.581140 4.2:-1955535 MS.gene04781:CDS
TCACGCGGATGTTTACAAAC+CGG 0.581892 4.2:-1955874 MS.gene04781:intron
TGGTGATATTTGGATTCACA+AGG 0.584168 4.2:-1957410 MS.gene04781:CDS
ATTGGCGCAAGCGAAGATGT+TGG 0.592501 4.2:-1957139 MS.gene04781:CDS
ACTTTAGTTCAAAATCTACT+GGG 0.593567 4.2:+1956666 None:intergenic
TGTGGGAGACATATTAGTAC+CGG 0.594974 4.2:-1956572 MS.gene04781:CDS
TTCCTATGCTAATAAATACA+TGG 0.597714 4.2:-1956822 MS.gene04781:intron
TTCACTTTGATAGTGAAATG+TGG 0.606782 4.2:+1955903 None:intergenic
GAACATTCCCTTCCACCGCA+AGG 0.608397 4.2:-1956437 MS.gene04781:intron
CAGCTAGAATTACCTTGCGG+TGG 0.610142 4.2:+1956425 None:intergenic
CACCATGTATTTATTAGCAT+AGG 0.611640 4.2:+1956820 None:intergenic
CAACCAAGTTGAGTACAGGT+TGG 0.611957 4.2:-1955551 MS.gene04781:CDS
TATGTAAACCTCAAAATGAG+AGG 0.618304 4.2:+1957318 None:intergenic
GGAGACATATTAGTACCGGA+TGG 0.645661 4.2:-1956568 MS.gene04781:CDS
AAGTATTTGAAGGAAAAGCA+AGG 0.649480 4.2:-1956647 MS.gene04781:CDS
CAAAGTGAAAACAAGTCACG+CGG 0.673052 4.2:-1955889 MS.gene04781:CDS
GGTGATATTTGGATTCACAA+GGG 0.673550 4.2:-1957409 MS.gene04781:CDS
AATGTTTCTCAATACTCCAG+AGG 0.715021 4.2:-1957467 MS.gene04781:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAATCAAAATATTAAT+TGG + chr4.2:1955885-1955904 None:intergenic 10.0%
!! AATTTATTATACCTTTAACT+TGG + chr4.2:1955829-1955848 None:intergenic 15.0%
!!! ATTTGATAATAATTTGAAAG+TGG - chr4.2:1956372-1956391 MS.gene04781:intron 15.0%
!!! ATTTTTGAAGATGAATTATT+CGG + chr4.2:1955995-1956014 None:intergenic 15.0%
!!! TTTAGGAATTTTTTTCAATT+TGG + chr4.2:1955801-1955820 None:intergenic 15.0%
!!! TTTGATAATAATTTGAAAGT+GGG - chr4.2:1956373-1956392 MS.gene04781:intron 15.0%
!! AAACATAATCATGAGATAAA+TGG + chr4.2:1957137-1957156 None:intergenic 20.0%
!! AGGTATAATAAATTCATGAT+TGG - chr4.2:1955835-1955854 MS.gene04781:intron 20.0%
!!! AATTGATTTTTTGCTTTTGT+TGG - chr4.2:1956869-1956888 MS.gene04781:CDS 20.0%
!!! TTTTGAACTAAAGTATTTGA+AGG - chr4.2:1956249-1956268 MS.gene04781:intron 20.0%
! AAAACTATCATGTCACATAA+AGG - chr4.2:1956633-1956652 MS.gene04781:CDS 25.0%
! AAATGCAAAAAAATTCCATC+CGG + chr4.2:1956356-1956375 None:intergenic 25.0%
! ATCATGAGATAAATGGTATT+TGG + chr4.2:1957130-1957149 None:intergenic 25.0%
! CAACAGTATTTAGTACAAAA+CGG - chr4.2:1956705-1956724 MS.gene04781:intron 25.0%
! GTTTGTAGAGGAAAATAAAT+TGG - chr4.2:1957383-1957402 MS.gene04781:CDS 25.0%
! TAATGGAGATGGAATTAATT+GGG - chr4.2:1956578-1956597 MS.gene04781:CDS 25.0%
! TACAGTTTAATAAAAACCTG+TGG - chr4.2:1957298-1957317 MS.gene04781:CDS 25.0%
! TTAATGGAGATGGAATTAAT+TGG - chr4.2:1956577-1956596 MS.gene04781:CDS 25.0%
! TTCCTATGCTAATAAATACA+TGG - chr4.2:1956084-1956103 MS.gene04781:intron 25.0%
! TTTGTTGATCTCAAGAATAA+TGG - chr4.2:1956529-1956548 MS.gene04781:CDS 25.0%
!! ACTTTAGTTCAAAATCTACT+GGG + chr4.2:1956243-1956262 None:intergenic 25.0%
!! TACTTTAGTTCAAAATCTAC+TGG + chr4.2:1956244-1956263 None:intergenic 25.0%
!! TGCTTATATTTAAGATCAGA+GGG + chr4.2:1957077-1957096 None:intergenic 25.0%
!! TTGCTTATATTTAAGATCAG+AGG + chr4.2:1957078-1957097 None:intergenic 25.0%
!!! AAAGTACTAATTTTTCGACT+AGG - chr4.2:1956442-1956461 MS.gene04781:CDS 25.0%
!!! CATATTTAACAAGAGTACTT+TGG - chr4.2:1955607-1955626 MS.gene04781:CDS 25.0%
!!! GAACAAACTTGTTGAAAATT+TGG - chr4.2:1955670-1955689 MS.gene04781:intron 25.0%
AAGTATTTGAAGGAAAAGCA+AGG - chr4.2:1956259-1956278 MS.gene04781:intron 30.0%
ACGCATTATTCTATAGATCA+TGG - chr4.2:1955536-1955555 MS.gene04781:CDS 30.0%
ACTTGGAATGTTAAACATTG+TGG - chr4.2:1956316-1956335 MS.gene04781:CDS 30.0%
CACCATGTATTTATTAGCAT+AGG + chr4.2:1956089-1956108 None:intergenic 30.0%
CCAATTCTCAATTTCTTATG+TGG + chr4.2:1955752-1955771 None:intergenic 30.0%
CCACATAAGAAATTGAGAAT+TGG - chr4.2:1955749-1955768 MS.gene04781:intron 30.0%
CTAAAAAGGATGGTGATATT+TGG - chr4.2:1955486-1955505 MS.gene04781:CDS 30.0%
CTTGGAATGTTAAACATTGT+GGG - chr4.2:1956317-1956336 MS.gene04781:CDS 30.0%
GTACATTTGACTAAAAAGGA+TGG - chr4.2:1955476-1955495 MS.gene04781:CDS 30.0%
TAATTCATGTCATGCATTCT+TGG - chr4.2:1957174-1957193 MS.gene04781:CDS 30.0%
TATGTAAACCTCAAAATGAG+AGG + chr4.2:1955591-1955610 None:intergenic 30.0%
TGTAGAGGAAAATAAATTGG+AGG - chr4.2:1957386-1957405 MS.gene04781:CDS 30.0%
TTTGAATCAGTTAATGGAGA+TGG - chr4.2:1956567-1956586 MS.gene04781:CDS 30.0%
! AACATTGTTGTGACTTCTTT+TGG - chr4.2:1956665-1956684 MS.gene04781:CDS 30.0%
! ATCTCCATTAACTGATTCAA+AGG + chr4.2:1956568-1956587 None:intergenic 30.0%
! CGTTTTGTACTAAATACTGT+TGG + chr4.2:1956707-1956726 None:intergenic 30.0%
! CTCATGATTATGTTTGAAAC+TGG - chr4.2:1957142-1957161 MS.gene04781:CDS 30.0%
! GGAAGTACATTTGACTAAAA+AGG - chr4.2:1955472-1955491 MS.gene04781:CDS 30.0%
! TGAAAAAACCTCTCATTTTG+AGG - chr4.2:1955580-1955599 MS.gene04781:CDS 30.0%
! TGCTTTTGATCATCTCAAAA+AGG + chr4.2:1956408-1956427 None:intergenic 30.0%
! TTTGATGCTCATATTTTCAG+AGG - chr4.2:1957456-1957475 MS.gene04781:CDS 30.0%
!! ATAGTTTTACGTTCAACTCT+AGG + chr4.2:1956621-1956640 None:intergenic 30.0%
!! TAGTTTTACGTTCAACTCTA+GGG + chr4.2:1956620-1956639 None:intergenic 30.0%
!! TTCACTTTGATAGTGAAATG+TGG + chr4.2:1957006-1957025 None:intergenic 30.0%
AATCAGCTAGAATTACCTTG+CGG + chr4.2:1956487-1956506 None:intergenic 35.0%
ATACTCCAGAGGACAAAAAA+TGG - chr4.2:1955450-1955469 MS.gene04781:CDS 35.0%
ATATTTGGATTCACAAGGGT+TGG - chr4.2:1955501-1955520 MS.gene04781:CDS 35.0%
ATGCATGTTCAATTTCTCAG+AGG - chr4.2:1955922-1955941 MS.gene04781:CDS 35.0%
CCTAAACTTGTCCAAGTTAA+AGG - chr4.2:1955815-1955834 MS.gene04781:intron 35.0%
CTCAATTTCTTATGTGGTTG+AGG + chr4.2:1955746-1955765 None:intergenic 35.0%
CTCATTATCCATGACTTGAA+GGG + chr4.2:1956293-1956312 None:intergenic 35.0%
CTTCACATTTAGGCATTTAG+TGG + chr4.2:1955960-1955979 None:intergenic 35.0%
CTTGATCATGCTTCACATTT+AGG + chr4.2:1955970-1955989 None:intergenic 35.0%
GAGGAAAATAAATTGGAGGA+TGG - chr4.2:1957390-1957409 MS.gene04781:CDS 35.0%
GGTGATATTTGGATTCACAA+GGG - chr4.2:1955497-1955516 MS.gene04781:CDS 35.0%
GTCATGACAACAGTGAAAAA+GGG + chr4.2:1956061-1956080 None:intergenic 35.0%
TACTCCAGAGGACAAAAAAT+GGG - chr4.2:1955451-1955470 MS.gene04781:CDS 35.0%
TCATGGATAATGAGAGAACT+TGG - chr4.2:1956299-1956318 MS.gene04781:CDS 35.0%
TCGTCCTTTGAATCAGTTAA+TGG - chr4.2:1956561-1956580 MS.gene04781:CDS 35.0%
TCTCATTATCCATGACTTGA+AGG + chr4.2:1956294-1956313 None:intergenic 35.0%
TGGTGATATTTGGATTCACA+AGG - chr4.2:1955496-1955515 MS.gene04781:CDS 35.0%
TGTCATGACAACAGTGAAAA+AGG + chr4.2:1956062-1956081 None:intergenic 35.0%
! GATTTAGTCTTCTTGCATGT+AGG + chr4.2:1955704-1955723 None:intergenic 35.0%
!! CCTTTAACTTGGACAAGTTT+AGG + chr4.2:1955818-1955837 None:intergenic 35.0%
!! GAAATGTGGATTTTTCAGAG+TGG + chr4.2:1956992-1957011 None:intergenic 35.0%
!! TGTTTTTGAGCTCGTCAATA+AGG - chr4.2:1957422-1957441 MS.gene04781:CDS 35.0%
AAACCTGTGGCATGTAAGAT+TGG - chr4.2:1957311-1957330 MS.gene04781:CDS 40.0%
AGAGTGTGTGTATTGCTTAC+CGG + chr4.2:1957054-1957073 None:intergenic 40.0%
AGGTTGGAGTAAGTTTGTAG+AGG - chr4.2:1957371-1957390 MS.gene04781:CDS 40.0%
CAAAATCTACTGGGATGTAC+TGG + chr4.2:1956234-1956253 None:intergenic 40.0%
CAAAGTGAAAACAAGTCACG+CGG - chr4.2:1957017-1957036 MS.gene04781:intron 40.0%
CCGTGATTCGCAAAAAATGA+CGG + chr4.2:1956781-1956800 None:intergenic 40.0%
CTTGTGACACAAGTACTTCT+CGG + chr4.2:1957265-1957284 None:intergenic 40.0%
GTTCAGTAGCAGCTATATAG+TGG - chr4.2:1956729-1956748 MS.gene04781:intron 40.0%
TGTGGGAGACATATTAGTAC+CGG - chr4.2:1956334-1956353 MS.gene04781:intron 40.0%
TGTGTATACGCTGCAGTTAA+CGG + chr4.2:1957233-1957252 None:intergenic 40.0%
!!! ACTTCCCATTTTTTGTCCTC+TGG + chr4.2:1955458-1955477 None:intergenic 40.0%
!!! CCGTCATTTTTTGCGAATCA+CGG - chr4.2:1956778-1956797 MS.gene04781:intron 40.0%
ACTCAACTTGGTTGACGGTT+CGG + chr4.2:1957349-1957368 None:intergenic 45.0%
ACTCCAACCTGTACTCAACT+TGG + chr4.2:1957361-1957380 None:intergenic 45.0%
AGAATTACCTTGCGGTGGAA+GGG + chr4.2:1956479-1956498 None:intergenic 45.0%
CCTGTACTCAACTTGGTTGA+CGG + chr4.2:1957354-1957373 None:intergenic 45.0%
CGTTATCACCCTTCAAGTCA+TGG - chr4.2:1956282-1956301 MS.gene04781:CDS 45.0%
TAGAATTACCTTGCGGTGGA+AGG + chr4.2:1956480-1956499 None:intergenic 45.0%
TCACGCGGATGTTTACAAAC+CGG - chr4.2:1957032-1957051 MS.gene04781:intron 45.0%
TTGGCATACCACAGGAAAGA+AGG - chr4.2:1956888-1956907 MS.gene04781:CDS 45.0%
TTGTGTTGCCTTCTTTCCTG+TGG + chr4.2:1956899-1956918 None:intergenic 45.0%
! CAACCAAGTTGAGTACAGGT+TGG - chr4.2:1957355-1957374 MS.gene04781:CDS 45.0%
! GGAGACATATTAGTACCGGA+TGG - chr4.2:1956338-1956357 MS.gene04781:intron 45.0%
! TGCTTTTGTTGGCATACCAC+AGG - chr4.2:1956880-1956899 MS.gene04781:CDS 45.0%
ATTGGCGCAAGCGAAGATGT+TGG - chr4.2:1955767-1955786 MS.gene04781:intron 50.0%
CAGCTAGAATTACCTTGCGG+TGG + chr4.2:1956484-1956503 None:intergenic 50.0%
TCGCCAATCTTACATGCCAC+AGG + chr4.2:1957317-1957336 None:intergenic 50.0%
! AACTTGGTTGACGGTTCGGA+TGG + chr4.2:1957345-1957364 None:intergenic 50.0%
! CCGTCAACCAAGTTGAGTAC+AGG - chr4.2:1957351-1957370 MS.gene04781:CDS 50.0%
GAACATTCCCTTCCACCGCA+AGG - chr4.2:1956469-1956488 MS.gene04781:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1955440 1957488 1955440 ID=MS.gene04781
chr4.2 mRNA 1955440 1957488 1955440 ID=MS.gene04781.t1;Parent=MS.gene04781
chr4.2 exon 1957092 1957488 1957092 ID=MS.gene04781.t1.exon1;Parent=MS.gene04781.t1
chr4.2 CDS 1957092 1957488 1957092 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
chr4.2 exon 1956823 1956986 1956823 ID=MS.gene04781.t1.exon2;Parent=MS.gene04781.t1
chr4.2 CDS 1956823 1956986 1956823 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
chr4.2 exon 1956438 1956693 1956438 ID=MS.gene04781.t1.exon3;Parent=MS.gene04781.t1
chr4.2 CDS 1956438 1956693 1956438 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
chr4.2 exon 1956274 1956351 1956274 ID=MS.gene04781.t1.exon4;Parent=MS.gene04781.t1
chr4.2 CDS 1956274 1956351 1956274 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
chr4.2 exon 1955875 1956026 1955875 ID=MS.gene04781.t1.exon5;Parent=MS.gene04781.t1
chr4.2 CDS 1955875 1956026 1955875 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
chr4.2 exon 1955440 1955685 1955440 ID=MS.gene04781.t1.exon6;Parent=MS.gene04781.t1
chr4.2 CDS 1955440 1955685 1955440 ID=cds.MS.gene04781.t1;Parent=MS.gene04781.t1
Gene Sequence

>MS.gene04781

ATGTTTCTCAATACTCCAGAGGACAAAAAATGGGAAGTACATTTGACTAAAAAGGATGGTGATATTTGGATTCACAAGGGTTGGAATGAATTTGCTACGCATTATTCTATAGATCATGGACACATGCTGATGTTTCAATATGAAAAAACCTCTCATTTTGAGGTTTACATATTTAACAAGAGTACTTTGGAAATTGAATATCACGTTGATAGTAATAATCAACATGAACAGAACAAACTTGTTGAAAATTTGGATGAAAAACCTACATGCAAGAAGACTAAATCAAAATCACAAATTTCAAGTCCTCAACCACATAAGAAATTGAGAATTGGCGCAAGCGAAGATGTTGGAACAAGCTCCAAATTGAAAAAAATTCCTAAACTTGTCCAAGTTAAAGGTATAATAAATTCATGATTGGATTAATCTCTATCATTTCATTTATCCAATTAATATTTTGATTTTTGAGATTGATTTTTCATAACATGCATGTTCAATTTCTCAGAGGAGATTGAAGATACCACTAAATGCCTAAATGTGAAGCATGATCAAGAGCCGAATAATTCATCTTCAAAAATTGCTGAAGCTTTAAACAAAGCAAAAAACTACAAAACTAACAATCCCTTTTTCACTGTTGTCATGACATATTCCTATGCTAATAAATACATGGTGAGTCTTTGAATAGCTTCATTTTTTATTTATTTTTATGTTAAGATAGTTTTATATTTTTAACTTCAAGTTAATGTACATCTTAATTGTTTGTTAGATTTTCTAACTTGTTACAAAATTTAAATCCAGTACATCCCAGTAGATTTTGAACTAAAGTATTTGAAGGAAAAGCAAGGCGTTATCACCCTTCAAGTCATGGATAATGAGAGAACTTGGAATGTTAAACATTGTGGGAGACATATTAGTACCGGATGGAATTTTTTTGCATTTGATAATAATTTGAAAGTGGGAGATGTTTGCCTTTTTGAGATGATCAAAAGCAATTCTTATGCTTTTAAAGTACTAATTTTTCGACTAGGCGAAGAACATTCCCTTCCACCGCAAGGTAATTCTAGCTGATTTTTCTTTAAGTTATTACTCTTTTTTGTTGATCTCAAGAATAATGGTTATAATTTTCGTCCTTTGAATCAGTTAATGGAGATGGAATTAATTGGGTTGAAACAGCAAGAATCCCTAGAGTTGAACGTAAAACTATCATGTCACATAAAGGTAAATCTTTAACATTGTTGTGACTTCTTTTGGAAAGTTAAAGTTGAATCCAACAGTATTTAGTACAAAACGGTGTTCAGTAGCAGCTATATAGTGGCGCTACGACAACATAATTCGAATATACCGTCATTTTTTGCGAATCACGGTTGACAATACTAGAATAAGAAAGCAATGCAACTATGCATATTTCAAAAATAGATGTAGCTTATTTGTAAATTGATTTTTTGCTTTTGTTGGCATACCACAGGAAAGAAGGCAACACAAAATTCACTGAATGCTAGTTCACGCTCTTTCAAAAGTTTTGAAGTTATGAAAGAATTCAATCAATTCACATCCACTCTGAAAAATCCACATTTCACTATCAAAGTGAAAACAAGTCACGCGGATGTTTACAAACCGGTAAGCAATACACACACTCTCCCTCTGATCTTAAATATAAGCAAAAAAATATATGTATTTGTCGAAATTTGAACCAAATACCATTTATCTCATGATTATGTTTGAAACTGGAGTAGTATTTAATTCATGTCATGCATTCTTGGAGCAAGCATGCAGTTATAATTATTGACATACTTCCGTTAACTGCAGCGTATACACAACTCGTTCTCCGAGAAGTACTTGTGTCACAAGAAGATTGTAACGTTACAGTTTAATAAAAACCTGTGGCATGTAAGATTGGCGAGCTGTCCATCCGAACCGTCAACCAAGTTGAGTACAGGTTGGAGTAAGTTTGTAGAGGAAAATAAATTGGAGGATGGAGATACATGTGTTTTTGAGCTCGTCAATAAGGAAGATCTTGTGTTTGATGCTCATATTTTCAGAGGCTGCAATTAG
Protein sequence

>MS.gene04781.t1

MFLNTPEDKKWEVHLTKKDGDIWIHKGWNEFATHYSIDHGHMLMFQYEKTSHFEVYIFNKSTLEIEYHVDSNNQHEQNKLVENLDEKPTCKKTKSKSQISSPQPHKKLRIGASEDVGTSSKLKKIPKLVQVKEEIEDTTKCLNVKHDQEPNNSSSKIAEALNKAKNYKTNNPFFTVVMTYSYANKYMYIPVDFELKYLKEKQGVITLQVMDNERTWNVKHCGRHISTGWNFFAFDNNLKVGDVCLFEMIKSNSYAFKVLIFRLGEEHSLPPQVNGDGINWVETARIPRVERKTIMSHKGKKATQNSLNASSRSFKSFEVMKEFNQFTSTLKNPHFTIKVKTSHADVYKPRIHNSFSEKYLCHKKIVTLQFNKNLWHVRLASCPSEPSTKLSTGWSKFVEENKLEDGDTCVFELVNKEDLVFDAHIFRGCN