AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047841.t1 MTR_4g085910 97.606 376 9 0 1 376 1 376 0.0 753
MS.gene047841.t1 MTR_3g101780 45.433 427 151 12 14 376 23 431 1.10e-90 279
MS.gene047841.t1 MTR_7g104480 34.307 411 176 16 24 370 45 425 2.93e-35 134
MS.gene047841.t1 MTR_8g043960 45.802 131 63 2 17 144 23 148 1.08e-29 116
MS.gene047841.t1 MTR_8g043960 75.000 56 13 1 296 350 237 292 2.72e-15 76.3
MS.gene047841.t1 MTR_7g088090 45.385 130 66 2 17 144 15 141 1.56e-26 108
MS.gene047841.t1 MTR_7g088090 70.492 61 14 1 288 344 232 292 3.13e-16 79.0
MS.gene047841.t1 MTR_3g010660 45.455 132 60 4 18 144 20 144 8.07e-25 103
MS.gene047841.t1 MTR_3g010660 66.667 57 18 1 296 352 246 301 8.32e-15 75.1
MS.gene047841.t1 MTR_6g026800 41.611 149 75 4 18 156 16 162 6.54e-24 100
MS.gene047841.t1 MTR_5g088230 42.188 128 59 4 18 138 17 136 3.89e-16 78.2
MS.gene047841.t1 MTR_5g088230 42.188 128 59 4 18 138 22 141 4.42e-16 77.8
MS.gene047841.t1 MTR_2g086340 36.296 135 68 4 19 142 23 150 2.04e-14 73.9
MS.gene047841.t1 MTR_2g086390 50.575 87 41 2 286 371 194 279 4.75e-13 69.3
MS.gene047841.t1 MTR_2g086390 60.000 60 23 1 286 344 194 253 9.58e-13 68.6
MS.gene047841.t1 MTR_1g098590 45.679 81 41 1 296 376 157 234 1.17e-12 67.4
MS.gene047841.t1 MTR_1g098590 60.377 53 21 0 296 348 157 209 1.53e-12 67.0
MS.gene047841.t1 MTR_7g015990 68.627 51 13 1 301 348 120 170 2.01e-12 65.9
MS.gene047841.t1 MTR_1g098590 60.377 53 21 0 296 348 157 209 2.57e-12 66.6
MS.gene047841.t1 MTR_5g022780 51.220 82 23 2 301 365 166 247 7.71e-12 65.1
MS.gene047841.t1 MTR_4g094390 60.377 53 21 0 296 348 125 177 1.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047841.t1 AT1G49720 45.897 390 160 11 18 376 23 392 3.17e-92 282
MS.gene047841.t1 AT1G49720 45.897 390 160 11 18 376 23 392 3.17e-92 282
MS.gene047841.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene047841.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene047841.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene047841.t1 AT1G45249 47.215 413 147 16 18 376 21 416 2.76e-89 275
MS.gene047841.t1 AT1G45249 47.215 413 147 16 18 376 36 431 4.87e-89 275
MS.gene047841.t1 AT1G45249 47.215 413 147 16 18 376 36 431 4.87e-89 275
MS.gene047841.t1 AT3G19290 44.340 424 163 13 10 376 25 432 4.98e-88 273
MS.gene047841.t1 AT1G49720 46.301 365 150 10 18 356 23 367 5.34e-88 271
MS.gene047841.t1 AT3G19290 44.550 422 164 13 10 376 25 431 6.01e-88 272
MS.gene047841.t1 AT3G19290 44.550 422 164 13 10 376 25 431 6.01e-88 272
MS.gene047841.t1 AT1G45249 45.991 424 147 17 18 376 21 427 1.19e-85 266
MS.gene047841.t1 AT4G34000 44.717 407 140 16 15 347 24 419 1.84e-84 264
MS.gene047841.t1 AT3G19290 43.970 398 157 11 10 356 25 407 5.92e-83 259
MS.gene047841.t1 AT1G45249 43.889 360 135 15 18 327 21 363 1.98e-64 210
MS.gene047841.t1 AT1G45249 43.889 360 135 15 18 327 21 363 1.98e-64 210
MS.gene047841.t1 AT3G19290 41.530 366 148 11 10 324 25 375 9.15e-64 209
MS.gene047841.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene047841.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene047841.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene047841.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene047841.t1 AT5G42910 36.022 372 167 15 13 353 15 346 3.03e-39 144
MS.gene047841.t1 AT3G56850 49.306 144 57 5 10 145 8 143 4.51e-31 120
MS.gene047841.t1 AT3G56850 57.143 91 31 3 290 376 211 297 2.01e-16 79.3
MS.gene047841.t1 AT2G41070 35.503 169 83 2 10 173 8 155 7.99e-26 104
MS.gene047841.t1 AT2G41070 65.672 67 20 1 290 353 177 243 1.62e-16 79.0
MS.gene047841.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene047841.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene047841.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene047841.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene047841.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene047841.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene047841.t1 AT2G41070 35.503 169 83 2 10 173 17 164 1.41e-25 104
MS.gene047841.t1 AT2G41070 74.138 58 12 1 290 344 186 243 4.85e-16 77.8
MS.gene047841.t1 AT3G44460 44.118 136 54 6 18 140 35 161 2.31e-20 91.3
MS.gene047841.t1 AT2G36270 35.676 185 59 3 16 140 35 219 9.19e-20 90.9
MS.gene047841.t1 AT2G36270 67.606 71 20 1 289 356 341 411 4.34e-18 85.9
MS.gene047841.t1 AT2G36270 35.676 185 59 3 16 140 35 219 9.19e-20 90.9
MS.gene047841.t1 AT2G36270 67.606 71 20 1 289 356 341 411 4.34e-18 85.9
MS.gene047841.t1 AT2G36270 35.870 184 58 3 17 140 36 219 1.28e-19 90.5
MS.gene047841.t1 AT2G36270 63.636 77 22 2 289 362 341 414 4.67e-18 85.9
MS.gene047841.t1 AT4G35900 53.333 75 30 2 302 376 216 285 1.94e-13 70.5
MS.gene047841.t1 AT2G17770 51.316 76 32 2 301 376 125 195 1.12e-12 66.6
MS.gene047841.t1 AT5G44080 63.793 58 20 1 289 345 219 276 1.18e-12 68.6
MS.gene047841.t1 AT1G03970 60.656 61 23 1 289 348 175 235 2.87e-12 67.0

Find 91 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATACAGGCAGAGTTTA+TGG 0.190438 4.4:+26410243 MS.gene047841:intron
ATGCTACAGTTGTAGGTTTC+GGG 0.224383 4.4:-26409515 None:intergenic
CTAAACCATTCATTATTATT+TGG 0.243582 4.4:-26409330 None:intergenic
AGAGAAAAGTTGATGAAGTT+TGG 0.248226 4.4:+26409169 MS.gene047841:CDS
CAACAACCAAATGGAAATAA+TGG 0.257332 4.4:+26409396 MS.gene047841:CDS
CTACCACCATTTGGGTTGTT+AGG 0.265606 4.4:-26409102 None:intergenic
CCTAATGTTGGTTGTCTTTG+AGG 0.269893 4.4:-26409225 None:intergenic
GAAGAAAATGCTACAGTTGT+AGG 0.325476 4.4:-26409522 None:intergenic
TACTTGAGAAGGACACTTAC+AGG 0.325650 4.4:+26410313 MS.gene047841:CDS
CTTGCTAGATTAACACTTCC+AGG 0.329485 4.4:-26408913 None:intergenic
AATGCTACAGTTGTAGGTTT+CGG 0.329976 4.4:-26409516 None:intergenic
TTACTTCCTGGAGAAGTAAC+AGG 0.334643 4.4:-26409645 None:intergenic
GGAGGAAGAGGAACATGTTT+AGG 0.346580 4.4:-26409447 None:intergenic
AACAACCAAATGGAAATAAT+GGG 0.348398 4.4:+26409397 MS.gene047841:CDS
TCAATTTGTTGAGCATGATT+AGG 0.349738 4.4:-26409303 None:intergenic
CTCCCTCTGTTGATTGCATA+AGG 0.369742 4.4:-26409726 None:intergenic
TTTGCAAACTACCACCATTT+GGG 0.380553 4.4:-26409110 None:intergenic
AAGTGTGTTCCTGTAGAAAA+AGG 0.390691 4.4:+26409750 MS.gene047841:CDS
GAGGTCACGGGCTCGCAAAC+AGG 0.396241 4.4:+26409821 MS.gene047841:CDS
ATATCCCCATTATTTCCATT+TGG 0.401525 4.4:-26409402 None:intergenic
ATGAGTTACAAAGCACCATT+GGG 0.419353 4.4:+26408965 MS.gene047841:CDS
AACATTAGGTGAAGTGACTT+TGG 0.430676 4.4:+26409239 MS.gene047841:CDS
CCTCAAAGACAACCAACATT+AGG 0.434960 4.4:+26409225 MS.gene047841:CDS
TTTCTCTGACTAAGTGTCCT+TGG 0.439082 4.4:-26409153 None:intergenic
CTTGGCTTTCAACAACCAAA+TGG 0.439959 4.4:+26409387 MS.gene047841:CDS
GGCTGAAGTTGCAAAACTTA+AGG 0.442265 4.4:+26410105 MS.gene047841:CDS
TATGGAAATGCAGAAAAGTA+AGG 0.444656 4.4:+26410261 MS.gene047841:CDS
CGAGGAATTACAAAGAAAAC+AGG 0.444987 4.4:+26410135 MS.gene047841:CDS
CAAGCATTGACATCTCTAAC+TGG 0.446103 4.4:+26409060 MS.gene047841:CDS
GCATTGTTTAGCAAATGAAT+AGG 0.446181 4.4:-26409546 None:intergenic
AATGGCAGAAGTGTAGTTCC+TGG 0.450498 4.4:+26409582 MS.gene047841:CDS
GCAGAAAAGTAAGGAGGATC+TGG 0.454613 4.4:+26410270 MS.gene047841:CDS
TGATTCAAGTTAATTGATGA+AGG 0.454755 4.4:-26409468 None:intergenic
AAAGGCCTACACTGTTGAAC+TGG 0.460693 4.4:+26410081 MS.gene047841:intron
TTACGCTTTGTAATCAAATC+CGG 0.464033 4.4:-26409675 None:intergenic
AAAGACCAAATAATAATGAA+TGG 0.465002 4.4:+26409325 MS.gene047841:CDS
AACAATAACACCAATCTACT+TGG 0.466588 4.4:+26409369 MS.gene047841:CDS
GATGAGTTACAAAGCACCAT+TGG 0.470063 4.4:+26408964 MS.gene047841:CDS
CTGTTGATTGCATAAGGAAC+TGG 0.477558 4.4:-26409720 None:intergenic
AAAAGTTGATGAAGTTTGGA+GGG 0.481612 4.4:+26409173 MS.gene047841:CDS
GGAACTGGTGACAGTAAAGT+AGG 0.483859 4.4:-26409705 None:intergenic
GTTCCTGGTGTTGGAATGCA+TGG 0.487439 4.4:+26409597 MS.gene047841:CDS
AGGGATTTGATGAAAGATAG+TGG 0.487452 4.4:+26409192 MS.gene047841:CDS
ACAGCTCCTGTTACTTCTCC+AGG 0.488845 4.4:+26409639 MS.gene047841:CDS
GAGAATCAGCTGCGAGGTCA+CGG 0.489882 4.4:+26409808 MS.gene047841:CDS
TTGCTAAACAATGCTCAACT+TGG 0.492309 4.4:+26409555 MS.gene047841:CDS
GAAAAGTTGATGAAGTTTGG+AGG 0.496145 4.4:+26409172 MS.gene047841:CDS
GGGTCAAAATGAACTTCGCT+TGG 0.497946 4.4:+26408869 None:intergenic
TTAATTGATGAAGGAGGAAG+AGG 0.498832 4.4:-26409459 None:intergenic
TCTCTAACTGGTGGAGGAGT+AGG 0.517394 4.4:+26409072 MS.gene047841:CDS
GAAGGACCTAACAACCCAAA+TGG 0.541425 4.4:+26409096 MS.gene047841:CDS
GTTGTAGGTTTCGGGAAAAG+TGG 0.542287 4.4:-26409507 None:intergenic
AACAGGAGCTGTGACATTTG+AGG 0.542288 4.4:-26409628 None:intergenic
AGAATCAGCTGCGAGGTCAC+GGG 0.543539 4.4:+26409809 MS.gene047841:CDS
ATAAAATAAAATACTTGAGA+AGG 0.546602 4.4:+26410302 MS.gene047841:CDS
TTGTTGAAAGCCAAGTAGAT+TGG 0.562943 4.4:-26409379 None:intergenic
TGAGGGAGTATATTGAAGAC+TGG 0.563542 4.4:-26408936 None:intergenic
GGTCAAAATGAACTTCGCTT+GGG 0.564260 4.4:+26408870 None:intergenic
AAAGTCACTTCACCTAATGT+TGG 0.567590 4.4:-26409237 None:intergenic
ATTAGGTGAAGTGACTTTGG+AGG 0.571566 4.4:+26409242 MS.gene047841:CDS
GAACTGGTGACAGTAAAGTA+GGG 0.576448 4.4:-26409704 None:intergenic
TCCAGGAAGTAAAATGTCGC+CGG 0.577416 4.4:+26409656 MS.gene047841:CDS
GCAATGAGTGTGAAGACACC+TGG 0.579770 4.4:+26408895 MS.gene047841:CDS
TTGACATCTCTAACTGGTGG+AGG 0.580857 4.4:+26409066 MS.gene047841:CDS
TTCAAGTTAATTGATGAAGG+AGG 0.584325 4.4:-26409465 None:intergenic
GTAGGTTTCGGGAAAAGTGG+TGG 0.611415 4.4:-26409504 None:intergenic
TTCCTTATGCAATCAACAGA+GGG 0.614058 4.4:+26409724 MS.gene047841:CDS
GGTTTCGGGAAAAGTGGTGG+CGG 0.614066 4.4:-26409501 None:intergenic
AGAAGTGTAGTTCCTGGTGT+TGG 0.622376 4.4:+26409588 MS.gene047841:CDS
AATGCTCAACTTGGTAACAA+TGG 0.622719 4.4:+26409564 MS.gene047841:CDS
GAAGGACACTTACAGGTCCA+TGG 0.625288 4.4:+26410320 MS.gene047841:CDS
GGCCTACACTGTTGAACTGG+AGG 0.626943 4.4:+26410084 MS.gene047841:intron
GCATTGACATCTCTAACTGG+TGG 0.627413 4.4:+26409063 MS.gene047841:CDS
TTTGTAACTCATCGAAAGTG+AGG 0.627807 4.4:-26408954 None:intergenic
ACTGGTGGAGGAGTAGGAGA+AGG 0.628322 4.4:+26409078 MS.gene047841:CDS
TTAACTTGAATCACTCTCAA+CGG 0.629011 4.4:+26409478 MS.gene047841:CDS
AAGGTTCATTGACATTGCCA+AGG 0.629803 4.4:+26409136 MS.gene047841:CDS
ACAACTCACATAATCTACCA+TGG 0.634836 4.4:-26410337 None:intergenic
TTGTAACTCATCGAAAGTGA+GGG 0.641219 4.4:-26408953 None:intergenic
ACAACCAAATGGAAATAATG+GGG 0.659967 4.4:+26409398 MS.gene047841:CDS
AAACCATGCATTCCAACACC+AGG 0.661096 4.4:-26409600 None:intergenic
GGAAATGCAGAAAAGTAAGG+AGG 0.663949 4.4:+26410264 MS.gene047841:CDS
CTTATGCAATCAACAGAGGG+AGG 0.664407 4.4:+26409727 MS.gene047841:CDS
GGACCTAACAACCCAAATGG+TGG 0.667509 4.4:+26409099 MS.gene047841:CDS
GTTCCTTATGCAATCAACAG+AGG 0.671116 4.4:+26409723 MS.gene047841:CDS
AGCCTCCAGTTCAACAGTGT+AGG 0.672463 4.4:-26410086 None:intergenic
GAGTTACAAAGCACCATTGG+GGG 0.707422 4.4:+26408967 MS.gene047841:CDS
AAAGTAAGGAGGATCTGGTG+CGG 0.707722 4.4:+26410275 MS.gene047841:CDS
TGAGTTACAAAGCACCATTG+GGG 0.710186 4.4:+26408966 MS.gene047841:CDS
AGAATAGAGAATCAGCTGCG+AGG 0.715608 4.4:+26409802 MS.gene047841:CDS
AAAACTTAAGGAAGTAAACG+AGG 0.734887 4.4:+26410117 MS.gene047841:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATACTTGAGA+AGG + chr4.4:26410302-26410321 MS.gene047841:CDS 15.0%
!!! AAATATTTGTTTCTTTTGAA+TGG + chr4.4:26410058-26410077 MS.gene047841:intron 15.0%
!! AAAGACCAAATAATAATGAA+TGG + chr4.4:26409325-26409344 MS.gene047841:CDS 20.0%
!! ATACATTATATGTGTATTGA+AGG - chr4.4:26409960-26409979 None:intergenic 20.0%
!! CTAAACCATTCATTATTATT+TGG - chr4.4:26409333-26409352 None:intergenic 20.0%
! AACAACCAAATGGAAATAAT+GGG + chr4.4:26409397-26409416 MS.gene047841:CDS 25.0%
! ATAACAACATCATAAGCTTA+AGG + chr4.4:26409978-26409997 MS.gene047841:intron 25.0%
! ATGAACTCTTGAAAAACATA+TGG + chr4.4:26409022-26409041 MS.gene047841:CDS 25.0%
! TATCAAAATGATGTAAGCAT+TGG + chr4.4:26410014-26410033 MS.gene047841:intron 25.0%
!! TGATTCAAGTTAATTGATGA+AGG - chr4.4:26409471-26409490 None:intergenic 25.0%
!!! TTTGTTTCTTTTGAATGGAA+AGG + chr4.4:26410063-26410082 MS.gene047841:intron 25.0%
AAAACTTAAGGAAGTAAACG+AGG + chr4.4:26410117-26410136 MS.gene047841:CDS 30.0%
AACAATAACACCAATCTACT+TGG + chr4.4:26409369-26409388 MS.gene047841:CDS 30.0%
ACAACCAAATGGAAATAATG+GGG + chr4.4:26409398-26409417 MS.gene047841:CDS 30.0%
ATATCCCCATTATTTCCATT+TGG - chr4.4:26409405-26409424 None:intergenic 30.0%
CAACAACCAAATGGAAATAA+TGG + chr4.4:26409396-26409415 MS.gene047841:CDS 30.0%
CATCAGTAATATGTTCACTA+AGG + chr4.4:26410189-26410208 MS.gene047841:intron 30.0%
CTTAACAAGCTTAATCATTC+TGG - chr4.4:26409922-26409941 None:intergenic 30.0%
GCATTGTTTAGCAAATGAAT+AGG - chr4.4:26409549-26409568 None:intergenic 30.0%
TATGGAAATGCAGAAAAGTA+AGG + chr4.4:26410261-26410280 MS.gene047841:CDS 30.0%
TTACAGTTTCTGACTACATT+TGG + chr4.4:26410220-26410239 MS.gene047841:intron 30.0%
TTACGCTTTGTAATCAAATC+CGG - chr4.4:26409678-26409697 None:intergenic 30.0%
! AGATTTTGGATCAATGAACA+TGG + chr4.4:26408999-26409018 MS.gene047841:CDS 30.0%
! TTAACTTGAATCACTCTCAA+CGG + chr4.4:26409478-26409497 MS.gene047841:CDS 30.0%
! TTCAAGTTAATTGATGAAGG+AGG - chr4.4:26409468-26409487 None:intergenic 30.0%
!! AAAAGTTGATGAAGTTTGGA+GGG + chr4.4:26409173-26409192 MS.gene047841:CDS 30.0%
!! AGAGAAAAGTTGATGAAGTT+TGG + chr4.4:26409169-26409188 MS.gene047841:CDS 30.0%
!! TCAATTTGTTGAGCATGATT+AGG - chr4.4:26409306-26409325 None:intergenic 30.0%
AAAGTCACTTCACCTAATGT+TGG - chr4.4:26409240-26409259 None:intergenic 35.0%
AACATTAGGTGAAGTGACTT+TGG + chr4.4:26409239-26409258 MS.gene047841:CDS 35.0%
AAGTGTGTTCCTGTAGAAAA+AGG + chr4.4:26409750-26409769 MS.gene047841:CDS 35.0%
AATGCTACAGTTGTAGGTTT+CGG - chr4.4:26409519-26409538 None:intergenic 35.0%
AGGGATTTGATGAAAGATAG+TGG + chr4.4:26409192-26409211 MS.gene047841:CDS 35.0%
CGAGGAATTACAAAGAAAAC+AGG + chr4.4:26410135-26410154 MS.gene047841:CDS 35.0%
GAAGAAAATGCTACAGTTGT+AGG - chr4.4:26409525-26409544 None:intergenic 35.0%
GACTACATTTGGTATGATAC+AGG + chr4.4:26410231-26410250 MS.gene047841:intron 35.0%
TATGATACAGGCAGAGTTTA+TGG + chr4.4:26410243-26410262 MS.gene047841:intron 35.0%
TTAATTGATGAAGGAGGAAG+AGG - chr4.4:26409462-26409481 None:intergenic 35.0%
TTCCTTATGCAATCAACAGA+GGG + chr4.4:26409724-26409743 MS.gene047841:CDS 35.0%
TTGCTAAACAATGCTCAACT+TGG + chr4.4:26409555-26409574 MS.gene047841:CDS 35.0%
TTGTAACTCATCGAAAGTGA+GGG - chr4.4:26408956-26408975 None:intergenic 35.0%
TTGTTGAAAGCCAAGTAGAT+TGG - chr4.4:26409382-26409401 None:intergenic 35.0%
TTTGCAAACTACCACCATTT+GGG - chr4.4:26409113-26409132 None:intergenic 35.0%
TTTGTAACTCATCGAAAGTG+AGG - chr4.4:26408957-26408976 None:intergenic 35.0%
! AATGCTCAACTTGGTAACAA+TGG + chr4.4:26409564-26409583 MS.gene047841:CDS 35.0%
! ATGAGTTACAAAGCACCATT+GGG + chr4.4:26408965-26408984 MS.gene047841:CDS 35.0%
! CTTTCAACACCTTTTTCTAC+AGG - chr4.4:26409762-26409781 None:intergenic 35.0%
! TTTTGCAAACTACCACCATT+TGG - chr4.4:26409114-26409133 None:intergenic 35.0%
!! CTGTAGAAAAAGGTGTTGAA+AGG + chr4.4:26409760-26409779 MS.gene047841:CDS 35.0%
!! GAAAAGTTGATGAAGTTTGG+AGG + chr4.4:26409172-26409191 MS.gene047841:CDS 35.0%
AAGGTTCATTGACATTGCCA+AGG + chr4.4:26409136-26409155 MS.gene047841:CDS 40.0%
ATGCTACAGTTGTAGGTTTC+GGG - chr4.4:26409518-26409537 None:intergenic 40.0%
ATTAGGTGAAGTGACTTTGG+AGG + chr4.4:26409242-26409261 MS.gene047841:CDS 40.0%
CCTCAAAGACAACCAACATT+AGG + chr4.4:26409225-26409244 MS.gene047841:CDS 40.0%
CTTGCTAGATTAACACTTCC+AGG - chr4.4:26408916-26408935 None:intergenic 40.0%
GAACTGGTGACAGTAAAGTA+GGG - chr4.4:26409707-26409726 None:intergenic 40.0%
GGAAATGCAGAAAAGTAAGG+AGG + chr4.4:26410264-26410283 MS.gene047841:CDS 40.0%
GGCTGAAGTTGCAAAACTTA+AGG + chr4.4:26410105-26410124 MS.gene047841:CDS 40.0%
GGTCAGAGAAACAAAACAGA+TGG - chr4.4:26409901-26409920 None:intergenic 40.0%
GTTCCTTATGCAATCAACAG+AGG + chr4.4:26409723-26409742 MS.gene047841:CDS 40.0%
TACTTGAGAAGGACACTTAC+AGG + chr4.4:26410313-26410332 MS.gene047841:CDS 40.0%
TTACTTCCTGGAGAAGTAAC+AGG - chr4.4:26409648-26409667 None:intergenic 40.0%
TTTCTCTGACTAAGTGTCCT+TGG - chr4.4:26409156-26409175 None:intergenic 40.0%
! CCTAATGTTGGTTGTCTTTG+AGG - chr4.4:26409228-26409247 None:intergenic 40.0%
! CTGTTGATTGCATAAGGAAC+TGG - chr4.4:26409723-26409742 None:intergenic 40.0%
! CTTGGCTTTCAACAACCAAA+TGG + chr4.4:26409387-26409406 MS.gene047841:CDS 40.0%
! GATGAGTTACAAAGCACCAT+TGG + chr4.4:26408964-26408983 MS.gene047841:CDS 40.0%
! GGTGGTAGTTTGCAAAAACA+AGG + chr4.4:26409117-26409136 MS.gene047841:CDS 40.0%
! TGAGGGAGTATATTGAAGAC+TGG - chr4.4:26408939-26408958 None:intergenic 40.0%
! TGAGTTACAAAGCACCATTG+GGG + chr4.4:26408966-26408985 MS.gene047841:CDS 40.0%
!! AGTGACTTTGGAGGAGTTTT+TGG + chr4.4:26409251-26409270 MS.gene047841:CDS 40.0%
!! CAAGCATTGACATCTCTAAC+TGG + chr4.4:26409060-26409079 MS.gene047841:CDS 40.0%
AAACCATGCATTCCAACACC+AGG - chr4.4:26409603-26409622 None:intergenic 45.0%
AAAGGCCTACACTGTTGAAC+TGG + chr4.4:26410081-26410100 MS.gene047841:intron 45.0%
AAAGTAAGGAGGATCTGGTG+CGG + chr4.4:26410275-26410294 MS.gene047841:CDS 45.0%
AACAGGAGCTGTGACATTTG+AGG - chr4.4:26409631-26409650 None:intergenic 45.0%
AGAATAGAGAATCAGCTGCG+AGG + chr4.4:26409802-26409821 MS.gene047841:CDS 45.0%
CTTATGCAATCAACAGAGGG+AGG + chr4.4:26409727-26409746 MS.gene047841:CDS 45.0%
GAAGGACCTAACAACCCAAA+TGG + chr4.4:26409096-26409115 MS.gene047841:CDS 45.0%
GCAGAAAAGTAAGGAGGATC+TGG + chr4.4:26410270-26410289 MS.gene047841:CDS 45.0%
GGAACTGGTGACAGTAAAGT+AGG - chr4.4:26409708-26409727 None:intergenic 45.0%
GGAGGAAGAGGAACATGTTT+AGG - chr4.4:26409450-26409469 None:intergenic 45.0%
GTTGTAGGTTTCGGGAAAAG+TGG - chr4.4:26409510-26409529 None:intergenic 45.0%
TCCAGGAAGTAAAATGTCGC+CGG + chr4.4:26409656-26409675 MS.gene047841:CDS 45.0%
TTGACATCTCTAACTGGTGG+AGG + chr4.4:26409066-26409085 MS.gene047841:CDS 45.0%
! AATGGCAGAAGTGTAGTTCC+TGG + chr4.4:26409582-26409601 MS.gene047841:CDS 45.0%
! AGAAGTGTAGTTCCTGGTGT+TGG + chr4.4:26409588-26409607 MS.gene047841:CDS 45.0%
! ATCTTTTCCAACTCCCCCAA+TGG - chr4.4:26408983-26409002 None:intergenic 45.0%
! CTCCCTCTGTTGATTGCATA+AGG - chr4.4:26409729-26409748 None:intergenic 45.0%
! GAGTTACAAAGCACCATTGG+GGG + chr4.4:26408967-26408986 MS.gene047841:CDS 45.0%
! GCATTGACATCTCTAACTGG+TGG + chr4.4:26409063-26409082 MS.gene047841:CDS 45.0%
! GGGGGAGTTGGAAAAGATTT+TGG + chr4.4:26408985-26409004 MS.gene047841:CDS 45.0%
!! CTACCACCATTTGGGTTGTT+AGG - chr4.4:26409105-26409124 None:intergenic 45.0%
AGCCTCCAGTTCAACAGTGT+AGG - chr4.4:26410089-26410108 None:intergenic 50.0%
GAAGGACACTTACAGGTCCA+TGG + chr4.4:26410320-26410339 MS.gene047841:CDS 50.0%
GCAATGAGTGTGAAGACACC+TGG + chr4.4:26408895-26408914 MS.gene047841:CDS 50.0%
GGACCTAACAACCCAAATGG+TGG + chr4.4:26409099-26409118 MS.gene047841:CDS 50.0%
GTAGGTTTCGGGAAAAGTGG+TGG - chr4.4:26409507-26409526 None:intergenic 50.0%
TCTCTAACTGGTGGAGGAGT+AGG + chr4.4:26409072-26409091 MS.gene047841:CDS 50.0%
! ACAGCTCCTGTTACTTCTCC+AGG + chr4.4:26409639-26409658 MS.gene047841:CDS 50.0%
! GTTCCTGGTGTTGGAATGCA+TGG + chr4.4:26409597-26409616 MS.gene047841:CDS 50.0%
! TCCGGCGACATTTTACTTCC+TGG - chr4.4:26409660-26409679 None:intergenic 50.0%
!!! GAGGAGTTTTTGGTGAGAGC+TGG + chr4.4:26409261-26409280 MS.gene047841:CDS 50.0%
ACTGGTGGAGGAGTAGGAGA+AGG + chr4.4:26409078-26409097 MS.gene047841:CDS 55.0%
AGAATCAGCTGCGAGGTCAC+GGG + chr4.4:26409809-26409828 MS.gene047841:CDS 55.0%
GAGAATCAGCTGCGAGGTCA+CGG + chr4.4:26409808-26409827 MS.gene047841:CDS 55.0%
GGCCTACACTGTTGAACTGG+AGG + chr4.4:26410084-26410103 MS.gene047841:intron 55.0%
GGTTTCGGGAAAAGTGGTGG+CGG - chr4.4:26409504-26409523 None:intergenic 55.0%
! CAAAGCACCATTGGGGGAGT+TGG + chr4.4:26408973-26408992 MS.gene047841:CDS 55.0%
GAGGTCACGGGCTCGCAAAC+AGG + chr4.4:26409821-26409840 MS.gene047841:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 26408877 26410345 26408877 ID=MS.gene047841
chr4.4 mRNA 26408877 26410345 26408877 ID=MS.gene047841.t1;Parent=MS.gene047841
chr4.4 exon 26408877 26409842 26408877 ID=MS.gene047841.t1.exon1;Parent=MS.gene047841.t1
chr4.4 CDS 26408877 26409842 26408877 ID=cds.MS.gene047841.t1;Parent=MS.gene047841.t1
chr4.4 exon 26410085 26410156 26410085 ID=MS.gene047841.t1.exon2;Parent=MS.gene047841.t1
chr4.4 CDS 26410085 26410156 26410085 ID=cds.MS.gene047841.t1;Parent=MS.gene047841.t1
chr4.4 exon 26410253 26410345 26410253 ID=MS.gene047841.t1.exon3;Parent=MS.gene047841.t1
chr4.4 CDS 26410253 26410345 26410253 ID=cds.MS.gene047841.t1;Parent=MS.gene047841.t1
Gene Sequence

>MS.gene047841

ATGAACTTCGCTTGGGATGCAATGAGTGTGAAGACACCTGGAAGTGTTAATCTAGCAAGCCAGTCTTCAATATACTCCCTCACTTTCGATGAGTTACAAAGCACCATTGGGGGAGTTGGAAAAGATTTTGGATCAATGAACATGGATGAACTCTTGAAAAACATATGGAATGTTGAAGAGACTCAAGCATTGACATCTCTAACTGGTGGAGGAGTAGGAGAAGGACCTAACAACCCAAATGGTGGTAGTTTGCAAAAACAAGGTTCATTGACATTGCCAAGGACACTTAGTCAGAGAAAAGTTGATGAAGTTTGGAGGGATTTGATGAAAGATAGTGGTTCATCTATGCCTCAAAGACAACCAACATTAGGTGAAGTGACTTTGGAGGAGTTTTTGGTGAGAGCTGGTGTTGTGAAAGAAGATACGCCTAATCATGCTCAACAAATTGAAAGACCAAATAATAATGAATGGTTTAGTGACTTCTCTAGATCAAACAATAACACCAATCTACTTGGCTTTCAACAACCAAATGGAAATAATGGGGATATGAGTGACAACAATAACTTAGTTCCTAAACATGTTCCTCTTCCTCCTTCATCAATTAACTTGAATCACTCTCAACGGCCGCCACCACTTTTCCCGAAACCTACAACTGTAGCATTTTCTTCTCCTATTCATTTGCTAAACAATGCTCAACTTGGTAACAATGGCAGAAGTGTAGTTCCTGGTGTTGGAATGCATGGTTTATCTGCCTCAAATGTCACAGCTCCTGTTACTTCTCCAGGAAGTAAAATGTCGCCGGATTTGATTACAAAGCGTAATTTAGACCCTACTTTACTGTCACCAGTTCCTTATGCAATCAACAGAGGGAGGAAGTGTGTTCCTGTAGAAAAAGGTGTTGAAAGGAGACAGAAGAGAATGATAAAGAATAGAGAATCAGCTGCGAGGTCACGGGCTCGCAAACAGGTTAGCATTTCATTTTAGTCATTTATGCATTCTTGTCAATATGAAGAAAATTTAACCATCTGTTTTGTTTCTCTGACCAGAATGATTAAGCTTGTTAAGTTCATTCGTTATTGTCCTTCAATACACATATAATGTATAACAACATCATAAGCTTAAGGAAATTATTCAAAGTATCAAAATGATGTAAGCATTGGCTTATAATGTACATAACTTCTAAATATTTGTTTCTTTTGAATGGAAAGGCCTACACTGTTGAACTGGAGGCTGAAGTTGCAAAACTTAAGGAAGTAAACGAGGAATTACAAAGAAAACAGGTATGTTAGATTGTCATTTTGCGCTGCATTCTCATCAGTAATATGTTCACTAAGGTTTTTTTTTTACAGTTTCTGACTACATTTGGTATGATACAGGCAGAGTTTATGGAAATGCAGAAAAGTAAGGAGGATCTGGTGCGGACAAATAAAATAAAATACTTGAGAAGGACACTTACAGGTCCATGGTAG
Protein sequence

>MS.gene047841.t1

MNFAWDAMSVKTPGSVNLASQSSIYSLTFDELQSTIGGVGKDFGSMNMDELLKNIWNVEETQALTSLTGGGVGEGPNNPNGGSLQKQGSLTLPRTLSQRKVDEVWRDLMKDSGSSMPQRQPTLGEVTLEEFLVRAGVVKEDTPNHAQQIERPNNNEWFSDFSRSNNNTNLLGFQQPNGNNGDMSDNNNLVPKHVPLPPSSINLNHSQRPPPLFPKPTTVAFSSPIHLLNNAQLGNNGRSVVPGVGMHGLSASNVTAPVTSPGSKMSPDLITKRNLDPTLLSPVPYAINRGRKCVPVEKGVERRQKRMIKNRESAARSRARKQAYTVELEAEVAKLKEVNEELQRKQAEFMEMQKSKEDLVRTNKIKYLRRTLTGPW