Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047854.t1 | XP_003607934.1 | 86.5 | 304 | 41 | 0 | 1 | 304 | 1 | 304 | 2.00E-141 | 511.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047854.t1 | Q9FXA3 | 35.3 | 136 | 72 | 4 | 175 | 304 | 181 | 306 | 1.8e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047854.t1 | G7JK21 | 86.5 | 304 | 41 | 0 | 1 | 304 | 1 | 304 | 1.4e-141 | 511.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene047854.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047854.t1 | MTR_4g085660 | 94.079 | 304 | 18 | 0 | 1 | 304 | 1 | 304 | 0.0 | 548 |
| MS.gene047854.t1 | MTR_4g085700 | 89.836 | 305 | 30 | 1 | 1 | 304 | 1 | 305 | 0.0 | 513 |
| MS.gene047854.t1 | MTR_4g081980 | 43.894 | 303 | 130 | 8 | 1 | 299 | 1 | 267 | 5.18e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047854.t1 | AT1G49770 | 33.746 | 323 | 159 | 8 | 12 | 304 | 9 | 306 | 2.27e-43 | 151 |
Find 64 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4.4:+26554581 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4.4:+26554640 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4.4:-26553369 | MS.gene047854:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.231106 | 4.4:-26554377 | MS.gene047854:intron |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4.4:-26554643 | MS.gene047854:CDS |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4.4:+26554364 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4.4:+26553661 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4.4:+26554589 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4.4:+26554641 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4.4:-26553719 | MS.gene047854:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4.4:+26553554 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4.4:-26554687 | MS.gene047854:CDS |
| TTTACCTTAGAAGGAAGTTC+AGG | 0.386490 | 4.4:+26554373 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4.4:-26553447 | MS.gene047854:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4.4:-26553718 | MS.gene047854:CDS |
| CGGTTTCTCTTCTTCCTCAC+CGG | 0.413966 | 4.4:+26554550 | None:intergenic |
| GGTATTGAAAATGCATTTGA+AGG | 0.432659 | 4.4:+26553575 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4.4:-26554686 | MS.gene047854:CDS |
| CGGTGAGGAAGAAGAGAAAC+CGG | 0.442669 | 4.4:-26554549 | MS.gene047854:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4.4:+26553705 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4.4:-26554426 | MS.gene047854:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4.4:+26553704 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4.4:-26553742 | MS.gene047854:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4.4:-26553036 | MS.gene047854:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4.4:-26554697 | MS.gene047854:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4.4:+26553439 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4.4:-26554671 | MS.gene047854:CDS |
| CTTTGTGCAACTAAGAAGCC+TGG | 0.516937 | 4.4:-26553470 | MS.gene047854:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4.4:-26554672 | MS.gene047854:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4.4:+26553662 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4.4:-26553441 | MS.gene047854:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4.4:-26554542 | MS.gene047854:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4.4:-26553670 | MS.gene047854:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4.4:+26553799 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4.4:-26553647 | MS.gene047854:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4.4:+26554389 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4.4:+26554381 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4.4:-26554441 | MS.gene047854:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4.4:+26553391 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4.4:-26554543 | MS.gene047854:CDS |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4.4:-26554569 | MS.gene047854:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4.4:-26553058 | MS.gene047854:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4.4:-26554592 | MS.gene047854:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4.4:+26553452 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4.4:-26553557 | MS.gene047854:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.579068 | 4.4:-26554548 | MS.gene047854:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4.4:+26553622 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4.4:-26554709 | MS.gene047854:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4.4:+26554711 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4.4:-26553669 | MS.gene047854:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4.4:-26553512 | MS.gene047854:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4.4:+26554530 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4.4:-26554580 | MS.gene047854:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4.4:+26553706 | None:intergenic |
| CAGGCTTCTTAGTTGCACAA+AGG | 0.674100 | 4.4:+26553471 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4.4:-26554544 | MS.gene047854:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4.4:-26553040 | MS.gene047854:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4.4:-26553020 | MS.gene047854:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4.4:-26554564 | MS.gene047854:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4.4:-26554670 | MS.gene047854:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4.4:+26554655 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.718521 | 4.4:-26554547 | MS.gene047854:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4.4:-26553509 | MS.gene047854:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4.4:-26553688 | MS.gene047854:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4.4:26553892-26553911 | MS.gene047854:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4.4:26554408-26554427 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4.4:26554470-26554489 | MS.gene047854:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4.4:26554563-26554582 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4.4:26553467-26553486 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4.4:26553651-26553670 | None:intergenic | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4.4:26554107-26554126 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4.4:26553955-26553974 | MS.gene047854:intron | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4.4:26553468-26553487 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4.4:26554357-26554376 | MS.gene047854:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4.4:26554501-26554520 | None:intergenic | 20.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4.4:26554214-26554233 | MS.gene047854:intron | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4.4:26553088-26553107 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4.4:26553365-26553384 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4.4:26553089-26553108 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4.4:26554632-26554651 | MS.gene047854:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4.4:26554496-26554515 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4.4:26553826-26553845 | MS.gene047854:intron | 25.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4.4:26554400-26554419 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4.4:26553083-26553102 | MS.gene047854:intron | 30.0% | |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4.4:26553597-26553616 | None:intergenic | 30.0% | |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4.4:26553984-26554003 | MS.gene047854:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4.4:26554182-26554201 | MS.gene047854:intron | 30.0% |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4.4:26553285-26553304 | MS.gene047854:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4.4:26554383-26554402 | None:intergenic | 30.0% |
| ! | GGTATTGAAAATGCATTTGA+AGG | + | chr4.4:26554154-26554173 | None:intergenic | 30.0% |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4.4:26553871-26553890 | None:intergenic | 30.0% |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4.4:26553134-26553153 | MS.gene047854:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4.4:26554067-26554086 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4.4:26554169-26554188 | MS.gene047854:intron | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4.4:26553544-26553563 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4.4:26553017-26553036 | MS.gene047854:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4.4:26554338-26554357 | None:intergenic | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4.4:26553056-26553075 | MS.gene047854:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4.4:26553055-26553074 | MS.gene047854:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4.4:26553596-26553615 | None:intergenic | 35.0% | |
| CCACAAATGACGAATTGTTT+GGG | + | chr4.4:26553776-26553795 | None:intergenic | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4.4:26553564-26553583 | MS.gene047854:CDS | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4.4:26553300-26553319 | MS.gene047854:intron | 35.0% | |
| GTTGTACTAAACATATGTGG+TGG | - | chr4.4:26554217-26554236 | MS.gene047854:intron | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4.4:26554008-26554027 | MS.gene047854:intron | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4.4:26553054-26553073 | MS.gene047854:CDS | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4.4:26553777-26553796 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4.4:26553563-26553582 | MS.gene047854:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4.4:26553040-26553059 | MS.gene047854:CDS | 35.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4.4:26553018-26553037 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4.4:26553690-26553709 | MS.gene047854:CDS | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4.4:26553356-26553375 | None:intergenic | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4.4:26554175-26554194 | None:intergenic | 35.0% |
| ! | AGAACTCGATTTTCATTCCT+GGG | + | chr4.4:26553753-26553772 | None:intergenic | 35.0% |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4.4:26554384-26554403 | None:intergenic | 35.0% |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4.4:26553140-26553159 | None:intergenic | 35.0% |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4.4:26554668-26554687 | MS.gene047854:CDS | 40.0% | |
| CAATCAAGGTGCAATCAAAG+AGG | + | chr4.4:26553637-26553656 | None:intergenic | 40.0% | |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4.4:26553146-26553165 | MS.gene047854:intron | 40.0% | |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4.4:26553773-26553792 | MS.gene047854:CDS | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4.4:26553593-26553612 | MS.gene047854:CDS | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4.4:26553567-26553586 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4.4:26554007-26554026 | MS.gene047854:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4.4:26553930-26553949 | None:intergenic | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4.4:26554686-26554705 | MS.gene047854:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4.4:26554068-26554087 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4.4:26553545-26553564 | None:intergenic | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4.4:26553039-26553058 | MS.gene047854:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4.4:26553543-26553562 | None:intergenic | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4.4:26554279-26554298 | MS.gene047854:intron | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | - | chr4.4:26553693-26553712 | MS.gene047854:CDS | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4.4:26554079-26554098 | MS.gene047854:intron | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | + | chr4.4:26553754-26553773 | None:intergenic | 40.0% |
| ! | TTCCTGGGTGGAACAATTTT+TGG | + | chr4.4:26553738-26553757 | None:intergenic | 40.0% |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4.4:26553148-26553167 | None:intergenic | 40.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4.4:26553157-26553176 | MS.gene047854:intron | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4.4:26554025-26554044 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4.4:26553348-26553367 | None:intergenic | 45.0% | |
| AGATGACTCACTCCCAAATG+GGG | + | chr4.4:26554023-26554042 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | - | chr4.4:26553733-26553752 | MS.gene047854:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4.4:26554056-26554075 | MS.gene047854:intron | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4.4:26554024-26554043 | None:intergenic | 45.0% | |
| CAGGCTTCTTAGTTGCACAA+AGG | + | chr4.4:26554258-26554277 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4.4:26554038-26554057 | MS.gene047854:intron | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4.4:26554706-26554725 | MS.gene047854:CDS | 45.0% | |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4.4:26554290-26554309 | None:intergenic | 45.0% | |
| CTTTGTGCAACTAAGAAGCC+TGG | - | chr4.4:26554256-26554275 | MS.gene047854:intron | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4.4:26553349-26553368 | MS.gene047854:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4.4:26554057-26554076 | MS.gene047854:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4.4:26553570-26553589 | MS.gene047854:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4.4:26553526-26553545 | MS.gene047854:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4.4:26553199-26553218 | None:intergenic | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4.4:26553591-26553610 | None:intergenic | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | + | chr4.4:26553750-26553769 | None:intergenic | 45.0% |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4.4:26553029-26553048 | MS.gene047854:CDS | 45.0% |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4.4:26554285-26554304 | MS.gene047854:intron | 45.0% |
| CGGTGAGGAAGAAGAGAAAC+CGG | - | chr4.4:26553177-26553196 | MS.gene047854:intron | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | + | chr4.4:26553179-26553198 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4.4:26554690-26554709 | MS.gene047854:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4.4:26553074-26553093 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4.4:26554277-26554296 | None:intergenic | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4.4:26553178-26553197 | MS.gene047854:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4.4:26553179-26553198 | MS.gene047854:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4.4:26553340-26553359 | None:intergenic | 50.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | + | chr4.4:26553702-26553721 | None:intergenic | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | - | chr4.4:26553698-26553717 | MS.gene047854:CDS | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4.4:26553182-26553201 | MS.gene047854:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4.4:26553184-26553203 | MS.gene047854:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4.4:26553183-26553202 | MS.gene047854:intron | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4.4:26553162-26553181 | MS.gene047854:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4.4:26553578-26553597 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 26553011 | 26554737 | 26553011 | ID=MS.gene047854 |
| chr4.4 | mRNA | 26553011 | 26554737 | 26553011 | ID=MS.gene047854.t1;Parent=MS.gene047854 |
| chr4.4 | exon | 26554378 | 26554737 | 26554378 | ID=MS.gene047854.t1.exon1;Parent=MS.gene047854.t1 |
| chr4.4 | CDS | 26554378 | 26554737 | 26554378 | ID=cds.MS.gene047854.t1;Parent=MS.gene047854.t1 |
| chr4.4 | exon | 26553364 | 26553834 | 26553364 | ID=MS.gene047854.t1.exon2;Parent=MS.gene047854.t1 |
| chr4.4 | CDS | 26553364 | 26553834 | 26553364 | ID=cds.MS.gene047854.t1;Parent=MS.gene047854.t1 |
| chr4.4 | exon | 26553011 | 26553094 | 26553011 | ID=MS.gene047854.t1.exon3;Parent=MS.gene047854.t1 |
| chr4.4 | CDS | 26553011 | 26553094 | 26553011 | ID=cds.MS.gene047854.t1;Parent=MS.gene047854.t1 |
| Gene Sequence |
| Protein sequence |
