AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047919

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047919.t1 MTR_2g022280 98.462 195 3 0 1 195 1 195 1.23e-140 390
MS.gene047919.t1 MTR_3g090850 48.908 229 74 5 1 186 101 329 1.67e-64 202
MS.gene047919.t1 MTR_1g028470 48.544 206 85 2 1 185 87 292 1.45e-58 186
MS.gene047919.t1 MTR_0194s0050 45.596 193 95 2 1 183 184 376 1.18e-48 162
MS.gene047919.t1 MTR_3g099620 38.660 194 102 5 1 181 116 305 1.35e-37 132
MS.gene047919.t1 MTR_1g082480 39.791 191 108 3 1 184 136 326 5.52e-37 131
MS.gene047919.t1 MTR_7g113830 39.572 187 108 3 1 183 116 301 2.52e-36 129
MS.gene047919.t1 MTR_8g066770 37.931 174 105 2 1 172 114 286 4.53e-35 125
MS.gene047919.t1 MTR_8g024210 43.548 186 96 2 1 185 181 358 2.96e-34 124
MS.gene047919.t1 MTR_1g082480 37.374 198 118 2 1 192 136 333 6.45e-34 123
MS.gene047919.t1 MTR_5g064950 36.170 188 115 3 1 183 100 287 5.99e-33 120
MS.gene047919.t1 MTR_5g064950 36.047 172 106 2 1 168 100 271 4.01e-30 112
MS.gene047919.t1 MTR_8g024790 29.518 166 105 3 1 166 290 443 7.27e-18 80.9
MS.gene047919.t1 MTR_8g024770 26.506 166 109 4 1 164 278 432 3.73e-13 67.4
MS.gene047919.t1 MTR_7g117670 25.140 179 109 3 1 177 401 556 5.53e-12 63.9
MS.gene047919.t1 MTR_8g027495 23.729 177 114 4 1 177 457 612 1.11e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047919.t1 AT3G06120 66.667 195 58 2 1 188 1 195 3.15e-83 245
MS.gene047919.t1 AT3G24140 45.545 202 90 3 1 186 197 394 7.77e-50 166
MS.gene047919.t1 AT3G24140 45.545 202 90 3 1 186 197 394 9.52e-50 166
MS.gene047919.t1 AT4G01460 42.553 188 103 3 1 185 115 300 5.14e-37 130
MS.gene047919.t1 AT4G01460 42.553 188 103 3 1 185 115 300 5.14e-37 130
MS.gene047919.t1 AT1G72210 37.368 190 106 4 1 183 125 308 1.39e-35 127
MS.gene047919.t1 AT2G46810 42.932 191 93 5 1 187 121 299 3.68e-35 125
MS.gene047919.t1 AT2G46810 42.932 191 93 5 1 187 181 359 1.22e-34 125
MS.gene047919.t1 AT2G46810 42.932 191 93 5 1 187 193 371 1.44e-34 125
MS.gene047919.t1 AT1G22490 36.216 185 114 3 1 184 115 296 9.49e-34 122
MS.gene047919.t1 AT2G46810 43.787 169 80 4 1 166 121 277 1.83e-31 116
MS.gene047919.t1 AT1G72210 36.628 172 97 3 1 166 125 290 2.10e-31 116
MS.gene047919.t1 AT3G61950 40.426 188 97 6 1 185 127 302 8.40e-31 114
MS.gene047919.t1 AT5G53210 74.242 66 17 0 1 66 102 167 1.53e-30 114
MS.gene047919.t1 AT5G53210 52.174 69 33 0 98 166 276 344 1.89e-17 79.3
MS.gene047919.t1 AT5G53210 74.242 66 17 0 1 66 102 167 1.88e-30 114
MS.gene047919.t1 AT5G53210 55.056 89 40 0 98 186 276 364 2.89e-27 106
MS.gene047919.t1 AT3G61950 40.426 188 97 6 1 185 178 353 4.28e-30 113
MS.gene047919.t1 AT1G22490 37.952 166 100 2 1 166 115 277 4.67e-30 112
MS.gene047919.t1 AT3G61950 42.208 154 76 4 1 153 127 268 2.32e-29 110
MS.gene047919.t1 AT3G61950 42.208 154 76 4 1 153 178 319 1.09e-28 109
MS.gene047919.t1 AT5G65320 35.057 174 112 1 1 173 102 275 3.78e-26 102
MS.gene047919.t1 AT5G46690 34.978 223 111 6 1 190 88 309 1.55e-25 100
MS.gene047919.t1 AT5G65320 34.132 167 109 1 1 166 102 268 7.21e-23 92.8
MS.gene047919.t1 AT5G46690 34.359 195 93 4 1 166 88 276 1.03e-21 90.1
MS.gene047919.t1 AT5G46760 28.652 178 104 5 1 172 414 574 6.56e-13 67.0

Find 38 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTTGTTTCTATATTAAA+AGG 0.106112 2.4:+65012691 MS.gene047919:CDS
TTAAACTCTTCCTTCTCTTT+TGG 0.165473 2.4:-65013194 None:intergenic
GGAGACCAAGCATCAATAAT+AGG 0.279505 2.4:+65013117 MS.gene047919:CDS
GATATCTCTTCCGGTGGAAT+TGG 0.287634 2.4:+65013270 MS.gene047919:CDS
GATGTAGAAGTGAAAATTTC+GGG 0.305312 2.4:+65013345 MS.gene047919:CDS
CATCAATTTGATATCTCTTC+CGG 0.314307 2.4:+65013261 MS.gene047919:CDS
TTTGGACTCGGACCTGGGCT+AGG 0.337861 2.4:-65013219 None:intergenic
AGATGTAGAAGTGAAAATTT+CGG 0.352906 2.4:+65013344 MS.gene047919:CDS
GAGACCAAGCATCAATAATA+GGG 0.364080 2.4:+65013118 MS.gene047919:CDS
GCTGGGATGTCAACTAAGTT+TGG 0.372864 2.4:+65014857 MS.gene047919:CDS
GTGGTTTCTCAAAGAATTCC+AGG 0.381915 2.4:+65013387 MS.gene047919:CDS
ATATCTCTTCCGGTGGAATT+GGG 0.386333 2.4:+65013271 MS.gene047919:CDS
TGGGACTAATAATGCTTTCA+AGG 0.390600 2.4:+65013290 MS.gene047919:CDS
ACATAGCTGTTGAGAGGAAC+AGG 0.425460 2.4:+65012625 MS.gene047919:CDS
ACCACTCTCAAAATCACGTT+TGG 0.426156 2.4:-65013369 None:intergenic
GAATTCCAGGTCAAGTTTCA+AGG 0.446514 2.4:+65013400 MS.gene047919:CDS
CCCTTGTTTCTATATTAAAA+GGG 0.462565 2.4:+65012692 MS.gene047919:CDS
GACCGTTCTATACCAATTTG+TGG 0.465718 2.4:+65013488 MS.gene047919:CDS
ATTCTAAAGCTTGAAGAACT+TGG 0.481599 2.4:-65013170 None:intergenic
TTTGTTACTACAGATAGAGC+TGG 0.503412 2.4:+65014839 MS.gene047919:intron
TTGGACTCGGACCTGGGCTA+GGG 0.504016 2.4:-65013218 None:intergenic
AAGTTTGGAGGAACTAGCTA+TGG 0.513586 2.4:+65014872 MS.gene047919:CDS
TCTATACCAATTTGTGGTCA+AGG 0.525881 2.4:+65013494 MS.gene047919:CDS
TCATCTTAACATCAGTAGCA+TGG 0.547962 2.4:+65013461 MS.gene047919:CDS
ATAATCCTTGAAACTTGACC+TGG 0.556421 2.4:-65013405 None:intergenic
CAATTTGATATCTCTTCCGG+TGG 0.570441 2.4:+65013264 MS.gene047919:CDS
AAGAGTTTAAGCCCTAGCCC+AGG 0.572825 2.4:+65013207 MS.gene047919:CDS
GGGATGTCAACTAAGTTTGG+AGG 0.579553 2.4:+65014860 MS.gene047919:CDS
TTGTTACTACAGATAGAGCT+GGG 0.580558 2.4:+65014840 MS.gene047919:intron
ACAGATGAATGAACATCTCA+AGG 0.583323 2.4:+65012653 MS.gene047919:CDS
ATTATTAGTCCCAATTCCAC+CGG 0.583906 2.4:-65013280 None:intergenic
AATAATGCTTTCAAGGAACT+AGG 0.585664 2.4:+65013297 MS.gene047919:CDS
CTTTAGAATCCCAAAAGAGA+AGG 0.588008 2.4:+65013184 MS.gene047919:CDS
ATATCAAATTGATGAAGTGT+TGG 0.611378 2.4:-65013252 None:intergenic
AGACCAAGCATCAATAATAG+GGG 0.616273 2.4:+65013119 MS.gene047919:CDS
GACCACAAATTGGTATAGAA+CGG 0.617195 2.4:-65013490 None:intergenic
TGTCTCACATAGCTGTTGAG+AGG 0.643820 2.4:+65012619 MS.gene047919:CDS
GACCAAGCATCAATAATAGG+GGG 0.668211 2.4:+65013120 MS.gene047919:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAAAAATAAAAGTAAA+AGG - chr2.4:65013942-65013961 None:intergenic 10.0%
!!! ATACAACAATTTTAAATATT+TGG - chr2.4:65014208-65014227 None:intergenic 10.0%
!!! TACAACAATTTTAAATATTT+GGG - chr2.4:65014207-65014226 None:intergenic 10.0%
!! AGACAATTTATAATATGATT+TGG - chr2.4:65012998-65013017 None:intergenic 15.0%
!! ATAAATTAATTAATCACTGA+AGG + chr2.4:65013876-65013895 MS.gene047919:intron 15.0%
!! CTATTTCAATACATTAAATA+TGG - chr2.4:65014506-65014525 None:intergenic 15.0%
!! TACAAGAAAATGTTAAATTA+CGG - chr2.4:65012868-65012887 None:intergenic 15.0%
!! TTAATGTATTGAAATAGTAA+TGG + chr2.4:65014509-65014528 MS.gene047919:intron 15.0%
!!! TATTTTTAGAACTAAATAGA+AGG - chr2.4:65014746-65014765 None:intergenic 15.0%
!!! TTTGATATTTGATTTTTAAG+TGG - chr2.4:65014294-65014313 None:intergenic 15.0%
!! AAATCAAATATCAAACTCTT+CGG + chr2.4:65014299-65014318 MS.gene047919:intron 20.0%
!! AAGACTAATTAAGGATATAA+AGG - chr2.4:65014159-65014178 None:intergenic 20.0%
!! AATACATGAACAAATGATTA+AGG + chr2.4:65013623-65013642 MS.gene047919:intron 20.0%
!! AATAGAAGGCAAAAATATAA+TGG - chr2.4:65014732-65014751 None:intergenic 20.0%
!! ACAAATTATGGAAAAAAAAG+AGG - chr2.4:65014824-65014843 None:intergenic 20.0%
!! ACAAGAAAATGTTAAATTAC+GGG - chr2.4:65012867-65012886 None:intergenic 20.0%
!! CAAATTATGGAAAAAAAAGA+GGG - chr2.4:65014823-65014842 None:intergenic 20.0%
!! CAATATAGTTATAATAACTG+CGG - chr2.4:65014637-65014656 None:intergenic 20.0%
!! TACATTAAAGTGCAATTAAA+AGG + chr2.4:65013832-65013851 MS.gene047919:intron 20.0%
!! TCAATAGTGAAATAAAGATA+GGG - chr2.4:65012738-65012757 None:intergenic 20.0%
!! TGTATTTGATTCATCAAATT+GGG - chr2.4:65013734-65013753 None:intergenic 20.0%
!! TTAATTAATCCGTTAAAGAT+TGG - chr2.4:65014447-65014466 None:intergenic 20.0%
!! TTCAATAGTGAAATAAAGAT+AGG - chr2.4:65012739-65012758 None:intergenic 20.0%
!! TTGTATTTGATTCATCAAAT+TGG - chr2.4:65013735-65013754 None:intergenic 20.0%
!!! AACAATTTTAAATATTTGGG+AGG - chr2.4:65014204-65014223 None:intergenic 20.0%
! AATCCACCTAAAAATTACTT+CGG + chr2.4:65014261-65014280 MS.gene047919:intron 25.0%
! AGATGTAGAAGTGAAAATTT+CGG + chr2.4:65013344-65013363 MS.gene047919:CDS 25.0%
! ATATCAAATTGATGAAGTGT+TGG - chr2.4:65013255-65013274 None:intergenic 25.0%
! CCATTCAAAATACAAACATA+TGG + chr2.4:65014096-65014115 MS.gene047919:intron 25.0%
! CGCAGTTATTATAACTATAT+TGG + chr2.4:65014635-65014654 MS.gene047919:intron 25.0%
! CTATCTGTAGTAACAAATTA+TGG - chr2.4:65014836-65014855 None:intergenic 25.0%
! GCATGTTTATCTAACTATAT+TGG + chr2.4:65014676-65014695 MS.gene047919:intron 25.0%
! TAATGCAATCCAATCTTTAA+CGG + chr2.4:65014435-65014454 MS.gene047919:intron 25.0%
! TAATGTAGCAGCTATAAATA+TGG - chr2.4:65013819-65013838 None:intergenic 25.0%
! TATAGTTAGATAAACATGCA+TGG - chr2.4:65014675-65014694 None:intergenic 25.0%
! TTAGCAATGAAATTAAAGAG+TGG - chr2.4:65012784-65012803 None:intergenic 25.0%
!! ACCCTTTTAATATAGAAACA+AGG - chr2.4:65012696-65012715 None:intergenic 25.0%
!! ACGTCAACTTTATTTAACTT+GGG + chr2.4:65013587-65013606 MS.gene047919:intron 25.0%
!! CCCTTTTAATATAGAAACAA+GGG - chr2.4:65012695-65012714 None:intergenic 25.0%
!! CCTTTTAATATAGAAACAAG+GGG - chr2.4:65012694-65012713 None:intergenic 25.0%
!! GAACACTATTGGTATTTTAT+AGG - chr2.4:65014336-65014355 None:intergenic 25.0%
!! TCTAAGCAACTGAAATTTTT+AGG + chr2.4:65013687-65013706 MS.gene047919:intron 25.0%
!! TTGAAACCGAAGTAATTTTT+AGG - chr2.4:65014270-65014289 None:intergenic 25.0%
!!! ATATCCTTAATTAGTCTTTG+AGG + chr2.4:65014161-65014180 MS.gene047919:intron 25.0%
!!! ATTTTTAGGCTTGTTCAATT+AGG + chr2.4:65013701-65013720 MS.gene047919:intron 25.0%
!!! CCATATGTTTGTATTTTGAA+TGG - chr2.4:65014099-65014118 None:intergenic 25.0%
!!! CCCTTGTTTCTATATTAAAA+GGG + chr2.4:65012692-65012711 MS.gene047919:CDS 25.0%
!!! GTTTGTATTTTGAATGGTTT+TGG - chr2.4:65014093-65014112 None:intergenic 25.0%
!!! TTTTTAGGCTTGTTCAATTA+GGG + chr2.4:65013702-65013721 MS.gene047919:intron 25.0%
!!! TTTTTGTAATTTGTGTGTGA+TGG + chr2.4:65013064-65013083 MS.gene047919:intron 25.0%
AAATTAGTGTTTGTCCTTTC+CGG + chr2.4:65014231-65014250 MS.gene047919:intron 30.0%
AATAATGCTTTCAAGGAACT+AGG + chr2.4:65013297-65013316 MS.gene047919:CDS 30.0%
CATCAATTTGATATCTCTTC+CGG + chr2.4:65013261-65013280 MS.gene047919:CDS 30.0%
GATGTAGAAGTGAAAATTTC+GGG + chr2.4:65013345-65013364 MS.gene047919:CDS 30.0%
TTCTCCTCAAAGACTAATTA+AGG - chr2.4:65014168-65014187 None:intergenic 30.0%
TTGAGGAGAAAATAATCTCA+TGG + chr2.4:65014178-65014197 MS.gene047919:intron 30.0%
TTGTCTCTAAATATATGACG+AGG + chr2.4:65013012-65013031 MS.gene047919:intron 30.0%
! AAAAGTAAAAGGGTGTAGAA+TGG - chr2.4:65013931-65013950 None:intergenic 30.0%
! ATGAACATCTCAAGGTTTTA+AGG + chr2.4:65012661-65012680 MS.gene047919:CDS 30.0%
! CACGTCAACTTTATTTAACT+TGG + chr2.4:65013586-65013605 MS.gene047919:intron 30.0%
! TAAACTCTTCCTTCTCTTTT+GGG - chr2.4:65013196-65013215 None:intergenic 30.0%
! TTAAACTCTTCCTTCTCTTT+TGG - chr2.4:65013197-65013216 None:intergenic 30.0%
! TTTAGGTGGATTCAAAATAC+CGG - chr2.4:65014253-65014272 None:intergenic 30.0%
! TTTGGCTTAATTCCTAATCT+AGG - chr2.4:65014060-65014079 None:intergenic 30.0%
!! AAACCGAAGTAATTTTTAGG+TGG - chr2.4:65014267-65014286 None:intergenic 30.0%
!! ACTTTTGCTATGAAATGGTA+GGG + chr2.4:65013762-65013781 MS.gene047919:intron 30.0%
!! ATTCTAAAGCTTGAAGAACT+TGG - chr2.4:65013173-65013192 None:intergenic 30.0%
!! CCCCTTGTTTCTATATTAAA+AGG + chr2.4:65012691-65012710 MS.gene047919:CDS 30.0%
ACAGATGAATGAACATCTCA+AGG + chr2.4:65012653-65012672 MS.gene047919:CDS 35.0%
AGACCAAGCATCAATAATAG+GGG + chr2.4:65013119-65013138 MS.gene047919:CDS 35.0%
AGGAATTAAGCCAAAGAAGA+GGG + chr2.4:65014065-65014084 MS.gene047919:intron 35.0%
ATAATCCTTGAAACTTGACC+TGG - chr2.4:65013408-65013427 None:intergenic 35.0%
ATTATTAGTCCCAATTCCAC+CGG - chr2.4:65013283-65013302 None:intergenic 35.0%
CAAAATGAACCTCCTAGATT+AGG + chr2.4:65014045-65014064 MS.gene047919:intron 35.0%
CCTACCTTGCTAGAAAAATA+GGG - chr2.4:65014124-65014143 None:intergenic 35.0%
GAAATAGTAATGGTGCTTTG+TGG + chr2.4:65014519-65014538 MS.gene047919:intron 35.0%
GACCACAAATTGGTATAGAA+CGG - chr2.4:65013493-65013512 None:intergenic 35.0%
GAGACCAAGCATCAATAATA+GGG + chr2.4:65013118-65013137 MS.gene047919:CDS 35.0%
GATTGGATTGCATTAGTAAG+AGG - chr2.4:65014430-65014449 None:intergenic 35.0%
GGAAAGGACAAACACTAATT+TGG - chr2.4:65014232-65014251 None:intergenic 35.0%
GTATGTAAGAACCATGCAAA+AGG - chr2.4:65014789-65014808 None:intergenic 35.0%
TAGGAATTAAGCCAAAGAAG+AGG + chr2.4:65014064-65014083 MS.gene047919:intron 35.0%
TCATCTTAACATCAGTAGCA+TGG + chr2.4:65013461-65013480 MS.gene047919:CDS 35.0%
TCCTACCTTGCTAGAAAAAT+AGG - chr2.4:65014125-65014144 None:intergenic 35.0%
TCTATACCAATTTGTGGTCA+AGG + chr2.4:65013494-65013513 MS.gene047919:CDS 35.0%
TGGGACTAATAATGCTTTCA+AGG + chr2.4:65013290-65013309 MS.gene047919:CDS 35.0%
TTGTTACTACAGATAGAGCT+GGG + chr2.4:65014840-65014859 MS.gene047919:intron 35.0%
TTTGTTACTACAGATAGAGC+TGG + chr2.4:65014839-65014858 MS.gene047919:intron 35.0%
! ACAACAAAGCTTTTGTTCAG+AGG + chr2.4:65014899-65014918 MS.gene047919:CDS 35.0%
! AGGAGGTTCATTTTGTTAGT+AGG - chr2.4:65014040-65014059 None:intergenic 35.0%
! AGTAAGAGGTGTAGATAGAA+GGG - chr2.4:65014416-65014435 None:intergenic 35.0%
! GGAGGTTCATTTTGTTAGTA+GGG - chr2.4:65014039-65014058 None:intergenic 35.0%
! GTTTTACCTTGACCACAAAT+TGG - chr2.4:65013503-65013522 None:intergenic 35.0%
! TAGTAAGAGGTGTAGATAGA+AGG - chr2.4:65014417-65014436 None:intergenic 35.0%
! TTTTAATCTTGCCTGCTTGT+GGG - chr2.4:65014010-65014029 None:intergenic 35.0%
!! CACTTTTGCTATGAAATGGT+AGG + chr2.4:65013761-65013780 MS.gene047919:intron 35.0%
!! CTTTAGAATCCCAAAAGAGA+AGG + chr2.4:65013184-65013203 MS.gene047919:CDS 35.0%
!! GTAATTTGTGTGTGATGGAT+TGG + chr2.4:65013069-65013088 MS.gene047919:intron 35.0%
!!! ACGTCACTTTTGCTATGAAA+TGG + chr2.4:65013757-65013776 MS.gene047919:intron 35.0%
AAGTTTGGAGGAACTAGCTA+TGG + chr2.4:65014872-65014891 MS.gene047919:CDS 40.0%
ACCACTCTCAAAATCACGTT+TGG - chr2.4:65013372-65013391 None:intergenic 40.0%
ATAACTGCGGAGTTTCATGT+TGG - chr2.4:65014624-65014643 None:intergenic 40.0%
ATATCTCTTCCGGTGGAATT+GGG + chr2.4:65013271-65013290 MS.gene047919:CDS 40.0%
CAATTTGATATCTCTTCCGG+TGG + chr2.4:65013264-65013283 MS.gene047919:CDS 40.0%
GAATTCCAGGTCAAGTTTCA+AGG + chr2.4:65013400-65013419 MS.gene047919:CDS 40.0%
GACCAAGCATCAATAATAGG+GGG + chr2.4:65013120-65013139 MS.gene047919:CDS 40.0%
GACCGTTCTATACCAATTTG+TGG + chr2.4:65013488-65013507 MS.gene047919:CDS 40.0%
GGAGACCAAGCATCAATAAT+AGG + chr2.4:65013117-65013136 MS.gene047919:CDS 40.0%
GGCTTAATTCCTAATCTAGG+AGG - chr2.4:65014057-65014076 None:intergenic 40.0%
GTGGATTCAAAATACCGGAA+AGG - chr2.4:65014248-65014267 None:intergenic 40.0%
GTGGTTTCTCAAAGAATTCC+AGG + chr2.4:65013387-65013406 MS.gene047919:CDS 40.0%
! AAAGTACTTAACCCACAAGC+AGG + chr2.4:65013996-65014015 MS.gene047919:intron 40.0%
! AGGCTTGTTCAATTAGGGTT+TGG + chr2.4:65013707-65013726 MS.gene047919:intron 40.0%
! CTTTTAATCTTGCCTGCTTG+TGG - chr2.4:65014011-65014030 None:intergenic 40.0%
! GTAAGAGGTGTAGATAGAAG+GGG - chr2.4:65014415-65014434 None:intergenic 40.0%
!! CCCTATTTTTCTAGCAAGGT+AGG + chr2.4:65014121-65014140 MS.gene047919:intron 40.0%
!! TCCAAACGTGATTTTGAGAG+TGG + chr2.4:65013368-65013387 MS.gene047919:CDS 40.0%
!! TGAAGGTAACTTGCTCTTCT+TGG + chr2.4:65013893-65013912 MS.gene047919:intron 40.0%
ACATAGCTGTTGAGAGGAAC+AGG + chr2.4:65012625-65012644 MS.gene047919:CDS 45.0%
CTCCCCCTATTATTGATGCT+TGG - chr2.4:65013125-65013144 None:intergenic 45.0%
GATATCTCTTCCGGTGGAAT+TGG + chr2.4:65013270-65013289 MS.gene047919:CDS 45.0%
GCTGGGATGTCAACTAAGTT+TGG + chr2.4:65014857-65014876 MS.gene047919:CDS 45.0%
GGGATGTCAACTAAGTTTGG+AGG + chr2.4:65014860-65014879 MS.gene047919:CDS 45.0%
TGGTTGAGGTGGAACACTAT+TGG - chr2.4:65014347-65014366 None:intergenic 45.0%
TGTCTCACATAGCTGTTGAG+AGG + chr2.4:65012619-65012638 MS.gene047919:CDS 45.0%
! TGCAAGATGTGCCTTTTGCA+TGG + chr2.4:65014775-65014794 MS.gene047919:intron 45.0%
!! AATGGATTGTGTGTGGTGTC+CGG - chr2.4:65014373-65014392 None:intergenic 45.0%
!! AGATAGAAGGGGCATTAGGT+TGG - chr2.4:65014404-65014423 None:intergenic 45.0%
!! ATTAGGTTGGAGGGAGAGAA+TGG - chr2.4:65014391-65014410 None:intergenic 45.0%
!! GGCACCCTATTTTTCTAGCA+AGG + chr2.4:65014117-65014136 MS.gene047919:intron 45.0%
!! GTGTAGATAGAAGGGGCATT+AGG - chr2.4:65014408-65014427 None:intergenic 45.0%
!!! AGTGTTGGCTGCAGTGTTTT+TGG - chr2.4:65013240-65013259 None:intergenic 45.0%
!!! GGTTTTGGAACCCTCTTCTT+TGG - chr2.4:65014078-65014097 None:intergenic 45.0%
!! TAAAAAAAATAAAAGTAAAA+GGG - chr2.4:65013941-65013960 None:intergenic 5.0%
!!! CAATTTATTTTTTTATTTTA+GGG + chr2.4:65013096-65013115 MS.gene047919:intron 5.0%
!!! TCAATTTATTTTTTTATTTT+AGG + chr2.4:65013095-65013114 MS.gene047919:intron 5.0%
AAGAGTTTAAGCCCTAGCCC+AGG + chr2.4:65013207-65013226 MS.gene047919:CDS 50.0%
TGTTCCACCTCAACCATTCC+CGG + chr2.4:65014351-65014370 MS.gene047919:intron 50.0%
! ATGGATTGTGTGTGGTGTCC+GGG - chr2.4:65014372-65014391 None:intergenic 50.0%
!! AGAAGGGGCATTAGGTTGGA+GGG - chr2.4:65014400-65014419 None:intergenic 50.0%
!! GGGAGAGAATGGATTGTGTG+TGG - chr2.4:65014380-65014399 None:intergenic 50.0%
!! TAGAAGGGGCATTAGGTTGG+AGG - chr2.4:65014401-65014420 None:intergenic 50.0%
!!! AGTGTTTTTGGACTCGGACC+TGG - chr2.4:65013228-65013247 None:intergenic 50.0%
!!! GGCTGCAGTGTTTTTGGACT+CGG - chr2.4:65013234-65013253 None:intergenic 50.0%
!!! GTGTTTTTGGACTCGGACCT+GGG - chr2.4:65013227-65013246 None:intergenic 50.0%
TTGTGTGTGGTGTCCGGGAA+TGG - chr2.4:65014367-65014386 None:intergenic 55.0%
GTGGTGTCCGGGAATGGTTG+AGG - chr2.4:65014361-65014380 None:intergenic 60.0%
GTGTCCGGGAATGGTTGAGG+TGG - chr2.4:65014358-65014377 None:intergenic 60.0%
TTGGACTCGGACCTGGGCTA+GGG - chr2.4:65013221-65013240 None:intergenic 60.0%
TTTGGACTCGGACCTGGGCT+AGG - chr2.4:65013222-65013241 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 65012618 65014944 65012618 ID=MS.gene047919
chr2.4 mRNA 65012618 65014944 65012618 ID=MS.gene047919.t1;Parent=MS.gene047919
chr2.4 exon 65012618 65012713 65012618 ID=MS.gene047919.t1.exon1;Parent=MS.gene047919.t1
chr2.4 CDS 65012618 65012713 65012618 ID=cds.MS.gene047919.t1;Parent=MS.gene047919.t1
chr2.4 exon 65013117 65013515 65013117 ID=MS.gene047919.t1.exon2;Parent=MS.gene047919.t1
chr2.4 CDS 65013117 65013515 65013117 ID=cds.MS.gene047919.t1;Parent=MS.gene047919.t1
chr2.4 exon 65014852 65014944 65014852 ID=MS.gene047919.t1.exon3;Parent=MS.gene047919.t1
chr2.4 CDS 65014852 65014944 65014852 ID=cds.MS.gene047919.t1;Parent=MS.gene047919.t1
Gene Sequence

>MS.gene047919

ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAGGTTTTAAGGTCGTTGACCCCTTGTTTCTATATTAAAAGGGTAAATATATATTATCTACATCCCTATCTTTATTTCACTATTGAATCAAGAACTGAAAAACATGAAACCACTCTTTAATTTCATTGCTAAATACTATTAGAGAGTTTACTAGTAAAGACTAAATTCATTTTTTGTCTATATTTTTTGTCTCCCGTAATTTAACATTTTCTTGTAATATTTTCTTTTATTTCACTACTAAAAAAATCTTAAATTAGCGAAAGAAATTTAAAGAATTTAAAGAAGAAAAACATCAAATCATTTTTTTTTTTGAAGAAAAAACACCAAATCATATTATAAATTGTCTCTAAATATATGACGAGGAAACTAGAGAGATTTATTCTTTTTTTTTTTTTTTGTAATTTGTGTGTGATGGATTGGTTCTCAATTTATTTTTTTATTTTAGGGAGACCAAGCATCAATAATAGGGGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAAGCTTTAGAATCCCAAAAGAGAAGGAAGAGTTTAAGCCCTAGCCCAGGTCCGAGTCCAAAAACACTGCAGCCAACACTTCATCAATTTGATATCTCTTCCGGTGGAATTGGGACTAATAATGCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCAATTGCAGATGTAGAAGTGAAAATTTCGGGTCCAAACGTGATTTTGAGAGTGGTTTCTCAAAGAATTCCAGGTCAAGTTTCAAGGATTATAACTGTTTTAGAAAGTCTTTCATTTGAAGTTCTTCATCTTAACATCAGTAGCATGGAAGAGACCGTTCTATACCAATTTGTGGTCAAGGTAAAACACACAACTATATTCTTCTCATAATTATTTGATGAATTCATAATTTATAAAAAAAAAAAATGATCACGTCAACTTTATTTAACTTGGGTATAGTAATTATTAATACATGAACAAATGATTAAGGTAACAAAGATAAGATTCTCAAATCTTTTGACTTTACTGTTCTCTAAGCAACTGAAATTTTTAGGCTTGTTCAATTAGGGTTTGGACCCAATTTGATGAATCAAATACAAAGACGTCACTTTTGCTATGAAATGGTAGGGTCATATCATACACAAAAATATACATAACTATCCATATTTATAGCTGCTACATTAAAGTGCAATTAAAAGGATACGAAAGATGATAAAATTAATAAATTAATTAATCACTGAAGGTAACTTGCTCTTCTTGGTTCTGTACTTGTCCATTCTACACCCTTTTACTTTTATTTTTTTTACATCAAATTTTATTGAATAACAGAGAGAAGTACAAAAAGTACTTAACCCACAAGCAGGCAAGATTAAAAGAGATACCCTACTAACAAAATGAACCTCCTAGATTAGGAATTAAGCCAAAGAAGAGGGTTCCAAAACCATTCAAAATACAAACATATGGCACCCTATTTTTCTAGCAAGGTAGGAGTTTACAATCTCCTTTATATCCTTAATTAGTCTTTGAGGAGAAAATAATCTCATGGCCTCCCAAATATTTAAAATTGTTGTATGCCAAATTAGTGTTTGTCCTTTCCGGTATTTTGAATCCACCTAAAAATTACTTCGGTTTCAATCCACTTAAAAATCAAATATCAAACTCTTCGGACAAAACTACACCTATAAAATACCAATAGTGTTCCACCTCAACCATTCCCGGACACCACACACAATCCATTCTCTCCCTCCAACCTAATGCCCCTTCTATCTACACCTCTTACTAATGCAATCCAATCTTTAACGGATTAATTAAGAAAAAAATTGCATTTCATGCGCTTCTTAATTCACTCCATATTTAATGTATTGAAATAGTAATGGTGCTTTGTGGAGCATTTATGTAACTTAATTCACTCCATATTTAATGTATTGAAATAGTAATGGTGCTTTGTGGAGCATTTATGTAAACTCCAACATGAAACTCCGCAGTTATTATAACTATATTGGATATATTATTCACTCCATGCATGTTTATCTAACTATATTGGATATATTATAGCTATGATCAAATATAGTGACCATTATATTTTTGCCTTCTATTTAGTTCTAAAAATAAATATTGATTGCAAGATGTGCCTTTTGCATGGTTCTTACATACTTCTCATCAAACCCTCTTTTTTTTCCATAATTTGTTACTACAGATAGAGCTGGGATGTCAACTAAGTTTGGAGGAACTAGCTATGGAAGTACAACAAAGCTTTTGTTCAGAGGCTATGAAGTTGACTGCTGTTTGA
Protein sequence

>MS.gene047919.t1

MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPGPSPKTLQPTLHQFDISSGGIGTNNAFKELGASCNSSIADVEVKISGPNVILRVVSQRIPGQVSRIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAMKLTAV