Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04795.t1 | XP_003630849.1 | 94.9 | 412 | 11 | 1 | 1 | 402 | 5 | 416 | 7.10E-219 | 769.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04795.t1 | Q8RWD0 | 43.1 | 452 | 160 | 22 | 7 | 401 | 6 | 417 | 3.3e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04795.t1 | G7L9P2 | 94.9 | 412 | 11 | 1 | 1 | 402 | 5 | 416 | 5.1e-219 | 769.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04795.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04795.t1 | MTR_8g104190 | 94.903 | 412 | 11 | 1 | 1 | 402 | 5 | 416 | 0.0 | 811 |
| MS.gene04795.t1 | MTR_1g110870 | 42.664 | 443 | 185 | 17 | 7 | 398 | 9 | 433 | 1.34e-82 | 259 |
| MS.gene04795.t1 | MTR_5g072780 | 45.794 | 107 | 42 | 3 | 280 | 386 | 126 | 216 | 1.41e-17 | 81.3 |
| MS.gene04795.t1 | MTR_7g032240 | 38.509 | 161 | 66 | 8 | 257 | 386 | 193 | 351 | 7.85e-17 | 81.6 |
| MS.gene04795.t1 | MTR_4g127420 | 46.000 | 100 | 38 | 3 | 283 | 380 | 293 | 378 | 1.29e-13 | 72.0 |
| MS.gene04795.t1 | MTR_4g128930 | 53.623 | 69 | 30 | 1 | 319 | 387 | 275 | 341 | 1.54e-12 | 68.9 |
| MS.gene04795.t1 | MTR_3g105710 | 70.455 | 44 | 13 | 0 | 344 | 387 | 232 | 275 | 1.72e-11 | 65.1 |
| MS.gene04795.t1 | MTR_7g018170 | 70.455 | 44 | 13 | 0 | 344 | 387 | 327 | 370 | 2.11e-11 | 65.5 |
| MS.gene04795.t1 | MTR_1g013450 | 68.182 | 44 | 14 | 0 | 344 | 387 | 255 | 298 | 2.83e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04795.t1 | AT1G68520 | 42.689 | 424 | 173 | 17 | 7 | 388 | 6 | 401 | 8.78e-82 | 256 |
| MS.gene04795.t1 | AT1G25440 | 42.191 | 429 | 168 | 16 | 7 | 386 | 6 | 403 | 2.29e-81 | 256 |
| MS.gene04795.t1 | AT1G73870 | 39.663 | 416 | 181 | 17 | 7 | 388 | 10 | 389 | 9.28e-68 | 220 |
| MS.gene04795.t1 | AT1G49130 | 34.204 | 383 | 162 | 13 | 12 | 387 | 22 | 321 | 3.69e-47 | 164 |
| MS.gene04795.t1 | AT1G49130 | 34.465 | 383 | 161 | 13 | 12 | 387 | 15 | 314 | 4.92e-47 | 164 |
| MS.gene04795.t1 | AT5G57180 | 48.148 | 108 | 38 | 2 | 279 | 386 | 336 | 425 | 2.78e-20 | 92.8 |
| MS.gene04795.t1 | AT4G25990 | 46.281 | 121 | 45 | 4 | 268 | 386 | 281 | 383 | 1.28e-19 | 90.1 |
| MS.gene04795.t1 | AT1G07050 | 36.571 | 175 | 73 | 6 | 231 | 386 | 38 | 193 | 1.55e-19 | 86.3 |
| MS.gene04795.t1 | AT5G57180 | 46.078 | 102 | 37 | 2 | 279 | 380 | 336 | 419 | 1.12e-16 | 81.6 |
| MS.gene04795.t1 | AT5G14370 | 42.593 | 108 | 59 | 2 | 280 | 386 | 231 | 336 | 2.15e-16 | 80.1 |
| MS.gene04795.t1 | AT4G25990 | 41.176 | 136 | 45 | 5 | 268 | 386 | 281 | 398 | 2.66e-16 | 80.5 |
| MS.gene04795.t1 | AT4G25990 | 44.348 | 115 | 44 | 4 | 268 | 380 | 281 | 377 | 4.41e-16 | 79.7 |
| MS.gene04795.t1 | AT1G07050 | 34.320 | 169 | 73 | 6 | 231 | 380 | 38 | 187 | 3.07e-15 | 74.3 |
| MS.gene04795.t1 | AT5G57660 | 70.455 | 44 | 13 | 0 | 344 | 387 | 285 | 328 | 2.35e-11 | 65.1 |
| MS.gene04795.t1 | AT5G24930 | 70.455 | 44 | 13 | 0 | 344 | 387 | 295 | 338 | 2.84e-11 | 65.1 |
| MS.gene04795.t1 | AT2G24790 | 70.455 | 44 | 13 | 0 | 344 | 387 | 229 | 272 | 3.96e-11 | 63.9 |
| MS.gene04795.t1 | AT2G24790 | 53.030 | 66 | 27 | 1 | 12 | 73 | 2 | 67 | 5.67e-11 | 63.5 |
| MS.gene04795.t1 | AT2G24790 | 53.030 | 66 | 27 | 1 | 12 | 73 | 2 | 67 | 4.14e-11 | 62.8 |
| MS.gene04795.t1 | AT3G02380 | 57.895 | 57 | 24 | 0 | 344 | 400 | 278 | 334 | 9.97e-11 | 63.2 |
Find 63 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAACGTCCTTTCATTCT+TGG | 0.215353 | 4.4:+2600112 | None:intergenic |
| TGATTCATGGCAAAACTTAT+TGG | 0.234314 | 4.4:-2600553 | MS.gene04795:intron |
| TTGTCATGGTTGTGACAATT+TGG | 0.309873 | 4.4:-2601410 | MS.gene04795:CDS |
| ATCACATGCTCTTGCTGTCT+TGG | 0.344245 | 4.4:+2601486 | None:intergenic |
| ATGGAGAAGTAAGAAGCTTA+AGG | 0.355490 | 4.4:-2600267 | MS.gene04795:CDS |
| AAATGAAATGTTAAAGGTTA+AGG | 0.373350 | 4.4:-2600861 | MS.gene04795:CDS |
| TCTTCATCACCTCCGAGTTC+AGG | 0.373850 | 4.4:+2601178 | None:intergenic |
| CAGGGTTCAAGTGGTGTAGA+TGG | 0.388893 | 4.4:-2600286 | MS.gene04795:CDS |
| TCATGTCAGTGGTAATTAGT+TGG | 0.390665 | 4.4:+2600049 | None:intergenic |
| CTTCCACTTGTTCCTGAACT+CGG | 0.406110 | 4.4:-2601190 | MS.gene04795:CDS |
| TGGAGAAGTAAGAAGCTTAA+GGG | 0.411931 | 4.4:-2600266 | MS.gene04795:CDS |
| TCAATTGTGATGATGATTCA+TGG | 0.426751 | 4.4:-2600566 | MS.gene04795:CDS |
| GATGCAGATGCAGGTGCCTT+GGG | 0.430470 | 4.4:-2601511 | MS.gene04795:CDS |
| AAAGGGCTGACATCGAAAAC+TGG | 0.442133 | 4.4:+2601091 | None:intergenic |
| CCTTAGCAGACGCGGTTTGA+AGG | 0.445349 | 4.4:+2601344 | None:intergenic |
| AGAAGATAAGATATGAAGTA+AGG | 0.448594 | 4.4:-2600156 | MS.gene04795:CDS |
| CCTTCAAACCGCGTCTGCTA+AGG | 0.473927 | 4.4:-2601344 | MS.gene04795:CDS |
| GTTGAAAGTTTACTTGGTGT+TGG | 0.483990 | 4.4:-2600959 | MS.gene04795:CDS |
| TTAATGGGAAGTGGTGGAGA+TGG | 0.488245 | 4.4:-2600238 | MS.gene04795:CDS |
| GAGATTCGAGAGAATTCATC+AGG | 0.489115 | 4.4:-2600929 | MS.gene04795:CDS |
| TCTTGCTGTCTTGGCTCCCA+AGG | 0.495634 | 4.4:+2601495 | None:intergenic |
| TTATAAACAAGAGAATGAAA+TGG | 0.496628 | 4.4:-2600894 | MS.gene04795:CDS |
| TCATCACAATTGAACTTAGG+AGG | 0.497589 | 4.4:+2600576 | None:intergenic |
| CCTTTCAGTAATAGTAGTGT+TGG | 0.498513 | 4.4:-2600725 | MS.gene04795:CDS |
| TTGAAAGTTTACTTGGTGTT+GGG | 0.498767 | 4.4:-2600958 | MS.gene04795:CDS |
| TGATGCAGATGCAGGTGCCT+TGG | 0.503435 | 4.4:-2601512 | MS.gene04795:CDS |
| GCTAATGTTGAAAGTTTACT+TGG | 0.513191 | 4.4:-2600965 | MS.gene04795:CDS |
| GGAGGGTTTGCAGTAGTCCA+TGG | 0.516903 | 4.4:+2600594 | None:intergenic |
| ATGGGAAGTGGTGGAGATGG+AGG | 0.526179 | 4.4:-2600235 | MS.gene04795:CDS |
| ATGAAGAGGTTATTACTGAA+TGG | 0.526407 | 4.4:-2600638 | MS.gene04795:CDS |
| TACAAGTCTCTAAATCGAAA+GGG | 0.527173 | 4.4:+2601074 | None:intergenic |
| GATGATGCTTTCCTTTGTCA+TGG | 0.527738 | 4.4:-2601424 | MS.gene04795:CDS |
| GGAGAAGTAAGAAGCTTAAG+GGG | 0.532873 | 4.4:-2600265 | MS.gene04795:CDS |
| ATTAGCAAGTAGACACGAAA+GGG | 0.537189 | 4.4:-2601371 | MS.gene04795:CDS |
| TCATCATCACAATTGAACTT+AGG | 0.539550 | 4.4:+2600573 | None:intergenic |
| GTACAAGTCTCTAAATCGAA+AGG | 0.540349 | 4.4:+2601073 | None:intergenic |
| CATCACAATTGAACTTAGGA+GGG | 0.544271 | 4.4:+2600577 | None:intergenic |
| GAAGAGAAGCAAGAGTATCA+AGG | 0.553110 | 4.4:-2600213 | MS.gene04795:CDS |
| TTTGAGACTAAACTATGAAG+AGG | 0.554254 | 4.4:-2600652 | MS.gene04795:CDS |
| GAAAAGAGACCAAGAATGAA+AGG | 0.557120 | 4.4:-2600121 | MS.gene04795:CDS |
| GGCAAGGTTCTCCTTCTCCA+TGG | 0.557589 | 4.4:-2600611 | MS.gene04795:CDS |
| ATTACTGAATGGAGCAGGCA+AGG | 0.558438 | 4.4:-2600627 | MS.gene04795:CDS |
| AGGTTATTACTGAATGGAGC+AGG | 0.563538 | 4.4:-2600632 | MS.gene04795:CDS |
| TATTGATTTCAGGGTTCAAG+TGG | 0.571240 | 4.4:-2600295 | MS.gene04795:intron |
| ATGAAAGGTGATGCAGATGC+AGG | 0.575851 | 4.4:-2601520 | MS.gene04795:CDS |
| ACAACAACAGCAACGTCTCA+AGG | 0.580637 | 4.4:-2601239 | MS.gene04795:CDS |
| GGGCAATTAATGGGAAGTGG+TGG | 0.598711 | 4.4:-2600244 | MS.gene04795:CDS |
| CCTCCGAGTTCAGGAACAAG+TGG | 0.605265 | 4.4:+2601187 | None:intergenic |
| TATTAGCAAGTAGACACGAA+AGG | 0.608632 | 4.4:-2601372 | MS.gene04795:CDS |
| TTTGCAGTAGTCCATGGAGA+AGG | 0.610228 | 4.4:+2600600 | None:intergenic |
| CCAACACTACTATTACTGAA+AGG | 0.612166 | 4.4:+2600725 | None:intergenic |
| TAACAACAACAGCACAAGCA+TGG | 0.618954 | 4.4:-2601321 | MS.gene04795:CDS |
| TGATATTGATGAGGCTGATG+AGG | 0.627860 | 4.4:-2601134 | MS.gene04795:CDS |
| ACTACTTGTTGATATTGATG+AGG | 0.630146 | 4.4:-2601143 | MS.gene04795:CDS |
| AATTGTCACAACCATGACAA+AGG | 0.630486 | 4.4:+2601413 | None:intergenic |
| TGTTGTTACCTTAGCAGACG+CGG | 0.639555 | 4.4:+2601336 | None:intergenic |
| CATGGCACAGTGGATTCACA+AGG | 0.649315 | 4.4:-2601303 | MS.gene04795:CDS |
| TCTATGATTACAGACATGAA+AGG | 0.650216 | 4.4:-2601535 | None:intergenic |
| CTCGGAGGTGATGAAGAACA+AGG | 0.666390 | 4.4:-2601172 | MS.gene04795:CDS |
| CCACTTGTTCCTGAACTCGG+AGG | 0.668175 | 4.4:-2601187 | MS.gene04795:CDS |
| GTTTAAGAAGAAGAGCACGT+TGG | 0.700628 | 4.4:-2601459 | MS.gene04795:CDS |
| GAGAAGTAAGAAGCTTAAGG+GGG | 0.726133 | 4.4:-2600264 | MS.gene04795:CDS |
| ACAGCACAAGCATGGCACAG+TGG | 0.751381 | 4.4:-2601313 | MS.gene04795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTAAACGACA+AGG | - | chr4.4:2601141-2601160 | MS.gene04795:CDS | 15.0% |
| !!! | TATTTTATTTTAAACGACAA+GGG | - | chr4.4:2601142-2601161 | MS.gene04795:CDS | 15.0% |
| !! | AAATGAAATGTTAAAGGTTA+AGG | - | chr4.4:2600713-2600732 | MS.gene04795:intron | 20.0% |
| !! | ATCCAAAAATGAAATGTTAA+AGG | - | chr4.4:2600707-2600726 | MS.gene04795:intron | 20.0% |
| !! | TTATAAACAAGAGAATGAAA+TGG | - | chr4.4:2600680-2600699 | MS.gene04795:intron | 20.0% |
| !!! | AACCTTTAACATTTCATTTT+TGG | + | chr4.4:2600712-2600731 | None:intergenic | 20.0% |
| !!! | TTTTGTGAATATTGATTTCA+GGG | - | chr4.4:2601270-2601289 | MS.gene04795:CDS | 20.0% |
| ! | AGAAGATAAGATATGAAGTA+AGG | - | chr4.4:2601418-2601437 | MS.gene04795:CDS | 25.0% |
| !!! | GTTTTGTGAATATTGATTTC+AGG | - | chr4.4:2601269-2601288 | MS.gene04795:CDS | 25.0% |
| ATGAAGAGGTTATTACTGAA+TGG | - | chr4.4:2600936-2600955 | MS.gene04795:CDS | 30.0% | |
| GCTAATGTTGAAAGTTTACT+TGG | - | chr4.4:2600609-2600628 | MS.gene04795:CDS | 30.0% | |
| TACAAGTCTCTAAATCGAAA+GGG | + | chr4.4:2600503-2600522 | None:intergenic | 30.0% | |
| TCATCATCACAATTGAACTT+AGG | + | chr4.4:2601004-2601023 | None:intergenic | 30.0% | |
| TGATTCATGGCAAAACTTAT+TGG | - | chr4.4:2601021-2601040 | MS.gene04795:CDS | 30.0% | |
| TTCAGTGATAAACAAGTAAG+TGG | + | chr4.4:2601205-2601224 | None:intergenic | 30.0% | |
| ! | ACTACTTGTTGATATTGATG+AGG | - | chr4.4:2600431-2600450 | MS.gene04795:intron | 30.0% |
| ! | TCAATTGTGATGATGATTCA+TGG | - | chr4.4:2601008-2601027 | MS.gene04795:CDS | 30.0% |
| ! | TTTGAGACTAAACTATGAAG+AGG | - | chr4.4:2600922-2600941 | MS.gene04795:CDS | 30.0% |
| !! | TTGAAAGTTTACTTGGTGTT+GGG | - | chr4.4:2600616-2600635 | MS.gene04795:CDS | 30.0% |
| !!! | AAATGATGCTGTTGATTTTG+AGG | - | chr4.4:2600530-2600549 | MS.gene04795:intron | 30.0% |
| AATTGTCACAACCATGACAA+AGG | + | chr4.4:2600164-2600183 | None:intergenic | 35.0% | |
| ACAAAACGTCCTTTCATTCT+TGG | + | chr4.4:2601465-2601484 | None:intergenic | 35.0% | |
| ATGGAGAAGTAAGAAGCTTA+AGG | - | chr4.4:2601307-2601326 | MS.gene04795:CDS | 35.0% | |
| ATTAGCAAGTAGACACGAAA+GGG | - | chr4.4:2600203-2600222 | MS.gene04795:CDS | 35.0% | |
| CATCACAATTGAACTTAGGA+GGG | + | chr4.4:2601000-2601019 | None:intergenic | 35.0% | |
| CCAACACTACTATTACTGAA+AGG | + | chr4.4:2600852-2600871 | None:intergenic | 35.0% | |
| CCTTTCAGTAATAGTAGTGT+TGG | - | chr4.4:2600849-2600868 | MS.gene04795:CDS | 35.0% | |
| GAAAAGAGACCAAGAATGAA+AGG | - | chr4.4:2601453-2601472 | MS.gene04795:CDS | 35.0% | |
| GTACAAGTCTCTAAATCGAA+AGG | + | chr4.4:2600504-2600523 | None:intergenic | 35.0% | |
| TATTAGCAAGTAGACACGAA+AGG | - | chr4.4:2600202-2600221 | MS.gene04795:CDS | 35.0% | |
| TCATCACAATTGAACTTAGG+AGG | + | chr4.4:2601001-2601020 | None:intergenic | 35.0% | |
| TGGAGAAGTAAGAAGCTTAA+GGG | - | chr4.4:2601308-2601327 | MS.gene04795:CDS | 35.0% | |
| TTGTCATGGTTGTGACAATT+TGG | - | chr4.4:2600164-2600183 | MS.gene04795:CDS | 35.0% | |
| ! | CAAGTGATGAGGTTTTTCAT+TGG | - | chr4.4:2600775-2600794 | MS.gene04795:CDS | 35.0% |
| ! | TTTTGACATGACAAGTGATG+AGG | - | chr4.4:2600764-2600783 | MS.gene04795:CDS | 35.0% |
| !! | GTTGAAAGTTTACTTGGTGT+TGG | - | chr4.4:2600615-2600634 | MS.gene04795:CDS | 35.0% |
| !! | TATTGATTTCAGGGTTCAAG+TGG | - | chr4.4:2601279-2601298 | MS.gene04795:CDS | 35.0% |
| !! | TCGACGAATTTTTGTTGTGA+CGG | + | chr4.4:2600311-2600330 | None:intergenic | 35.0% |
| !! | TGAAAGGACGTTTTGTTAAG+AGG | - | chr4.4:2601469-2601488 | MS.gene04795:CDS | 35.0% |
| !! | TTTTGAGGAAATGTGTGACT+TGG | - | chr4.4:2600545-2600564 | MS.gene04795:intron | 35.0% |
| AAGCTTAAGGGGGCAATTAA+TGG | - | chr4.4:2601320-2601339 | MS.gene04795:CDS | 40.0% | |
| AGCTTAAGGGGGCAATTAAT+GGG | - | chr4.4:2601321-2601340 | MS.gene04795:CDS | 40.0% | |
| AGGTTATTACTGAATGGAGC+AGG | - | chr4.4:2600942-2600961 | MS.gene04795:CDS | 40.0% | |
| GAGAAGTAAGAAGCTTAAGG+GGG | - | chr4.4:2601310-2601329 | MS.gene04795:CDS | 40.0% | |
| GAGATTCGAGAGAATTCATC+AGG | - | chr4.4:2600645-2600664 | MS.gene04795:CDS | 40.0% | |
| GATGATGCTTTCCTTTGTCA+TGG | - | chr4.4:2600150-2600169 | MS.gene04795:CDS | 40.0% | |
| GGAGAAGTAAGAAGCTTAAG+GGG | - | chr4.4:2601309-2601328 | MS.gene04795:CDS | 40.0% | |
| TAACAACAACAGCACAAGCA+TGG | - | chr4.4:2600253-2600272 | MS.gene04795:CDS | 40.0% | |
| TGATATTGATGAGGCTGATG+AGG | - | chr4.4:2600440-2600459 | MS.gene04795:intron | 40.0% | |
| ! | GTTTAAGAAGAAGAGCACGT+TGG | - | chr4.4:2600115-2600134 | MS.gene04795:CDS | 40.0% |
| !! | CGACGAATTTTTGTTGTGAC+GGG | + | chr4.4:2600310-2600329 | None:intergenic | 40.0% |
| !! | GAAGAGAAGCAAGAGTATCA+AGG | - | chr4.4:2601361-2601380 | MS.gene04795:CDS | 40.0% |
| !! | GACGAATTTTTGTTGTGACG+GGG | + | chr4.4:2600309-2600328 | None:intergenic | 40.0% |
| AAAGGGCTGACATCGAAAAC+TGG | + | chr4.4:2600486-2600505 | None:intergenic | 45.0% | |
| ACAACAACAGCAACGTCTCA+AGG | - | chr4.4:2600335-2600354 | MS.gene04795:intron | 45.0% | |
| ATGAAAGGTGATGCAGATGC+AGG | - | chr4.4:2600054-2600073 | MS.gene04795:CDS | 45.0% | |
| ATTACTGAATGGAGCAGGCA+AGG | - | chr4.4:2600947-2600966 | MS.gene04795:CDS | 45.0% | |
| CTTCCACTTGTTCCTGAACT+CGG | - | chr4.4:2600384-2600403 | MS.gene04795:intron | 45.0% | |
| GGTTGAATCTCAGTAGATCG+TGG | - | chr4.4:2601163-2601182 | MS.gene04795:CDS | 45.0% | |
| TGTTGTTACCTTAGCAGACG+CGG | + | chr4.4:2600241-2600260 | None:intergenic | 45.0% | |
| TTTGCAGTAGTCCATGGAGA+AGG | + | chr4.4:2600977-2600996 | None:intergenic | 45.0% | |
| ! | AAGAGGACAGCATGTTTTGC+TGG | - | chr4.4:2601486-2601505 | MS.gene04795:CDS | 45.0% |
| ! | ATCACATGCTCTTGCTGTCT+TGG | + | chr4.4:2600091-2600110 | None:intergenic | 45.0% |
| ! | TTAATGGGAAGTGGTGGAGA+TGG | - | chr4.4:2601336-2601355 | MS.gene04795:CDS | 45.0% |
| AGGGGGCAATTAATGGGAAG+TGG | - | chr4.4:2601327-2601346 | MS.gene04795:CDS | 50.0% | |
| CAGGGTTCAAGTGGTGTAGA+TGG | - | chr4.4:2601288-2601307 | MS.gene04795:CDS | 50.0% | |
| CTCGGAGGTGATGAAGAACA+AGG | - | chr4.4:2600402-2600421 | MS.gene04795:intron | 50.0% | |
| GGGCAATTAATGGGAAGTGG+TGG | - | chr4.4:2601330-2601349 | MS.gene04795:CDS | 50.0% | |
| TCTTCATCACCTCCGAGTTC+AGG | + | chr4.4:2600399-2600418 | None:intergenic | 50.0% | |
| ! | AGGACAGCATGTTTTGCTGG+AGG | - | chr4.4:2601489-2601508 | MS.gene04795:CDS | 50.0% |
| ! | CATGGCACAGTGGATTCACA+AGG | - | chr4.4:2600271-2600290 | MS.gene04795:CDS | 50.0% |
| ACAGCACAAGCATGGCACAG+TGG | - | chr4.4:2600261-2600280 | MS.gene04795:CDS | 55.0% | |
| CCACTTGTTCCTGAACTCGG+AGG | - | chr4.4:2600387-2600406 | MS.gene04795:intron | 55.0% | |
| CCTCCGAGTTCAGGAACAAG+TGG | + | chr4.4:2600390-2600409 | None:intergenic | 55.0% | |
| CCTTAGCAGACGCGGTTTGA+AGG | + | chr4.4:2600233-2600252 | None:intergenic | 55.0% | |
| CCTTCAAACCGCGTCTGCTA+AGG | - | chr4.4:2600230-2600249 | MS.gene04795:CDS | 55.0% | |
| GATGCAGATGCAGGTGCCTT+GGG | - | chr4.4:2600063-2600082 | MS.gene04795:CDS | 55.0% | |
| GGAGGGTTTGCAGTAGTCCA+TGG | + | chr4.4:2600983-2601002 | None:intergenic | 55.0% | |
| GGCAAGGTTCTCCTTCTCCA+TGG | - | chr4.4:2600963-2600982 | MS.gene04795:CDS | 55.0% | |
| TGATGCAGATGCAGGTGCCT+TGG | - | chr4.4:2600062-2600081 | MS.gene04795:CDS | 55.0% | |
| ! | ATGGGAAGTGGTGGAGATGG+AGG | - | chr4.4:2601339-2601358 | MS.gene04795:CDS | 55.0% |
| ! | TCTTGCTGTCTTGGCTCCCA+AGG | + | chr4.4:2600082-2600101 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2600054 | 2601542 | 2600054 | ID=MS.gene04795 |
| chr4.4 | mRNA | 2600054 | 2601542 | 2600054 | ID=MS.gene04795.t1;Parent=MS.gene04795 |
| chr4.4 | exon | 2600720 | 2601542 | 2600720 | ID=MS.gene04795.t1.exon1;Parent=MS.gene04795.t1 |
| chr4.4 | CDS | 2600720 | 2601542 | 2600720 | ID=cds.MS.gene04795.t1;Parent=MS.gene04795.t1 |
| chr4.4 | exon | 2600554 | 2600687 | 2600554 | ID=MS.gene04795.t1.exon2;Parent=MS.gene04795.t1 |
| chr4.4 | CDS | 2600554 | 2600687 | 2600554 | ID=cds.MS.gene04795.t1;Parent=MS.gene04795.t1 |
| chr4.4 | exon | 2600054 | 2600305 | 2600054 | ID=MS.gene04795.t1.exon3;Parent=MS.gene04795.t1 |
| chr4.4 | CDS | 2600054 | 2600305 | 2600054 | ID=cds.MS.gene04795.t1;Parent=MS.gene04795.t1 |
| Gene Sequence |
| Protein sequence |
